proteins
| 39 proteins |
O | COG2020 | Putative protein-S-isoprenylcysteine methyltransferase | Help | |
|---|---|---|---|---|---|
| 5 from | query genome Methanosarcina acetivorans str.C2A (Methanosarcinales | Methanomicrobia) | ||||
| MA0734 MA1000 MA2249 MA2467 MA2698 | ||||
194 letters 0
0 1021 = |||MA2698 (194) = 0
0 318 = BMEII0990 (194) = 1
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MA2698
(194 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
MA2698 397 e-111
BMEII0990 127 2e-29
SMc01203 120 1e-27
MA1000 73 3e-13
YDR410c 59 5e-09
CAC3412 59 5e-09
SPAC10F6.12c 59 8e-09
RSc2022 54 3e-07
PH1225 48 1e-05
PM2013 46 4e-05
NMB0883 46 6e-05
NMA1102 46 6e-05
AF2387 46 6e-05
MT1254 41 0.001
BS_ypbQ 41 0.002
BMEI2009 39 0.007
BH0618 38 0.012
FN0070 31 1.4
AGc3597 31 1.4
MYPU_1770_2 30 4.2
AGc3120 29 7.1
# >MA2698
# Length = 194
#
# Score = 397 bits (1021), Expect = e-111
# Identities = 194/194 (100%), Positives = 194/194 (100%)
#
# Query: 1 MNENLWKICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTA 60
# MNENLWKICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTA
# Sbjct: 1 MNENLWKICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTA 60
#
# Query: 61 VFSSYLDSFNINLPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGI 120
# VFSSYLDSFNINLPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGI
# Sbjct: 61 VFSSYLDSFNINLPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGI 120
#
# Query: 121 YKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEFGDEYI 180
# YKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEFGDEYI
# Sbjct: 121 YKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEFGDEYI 180
#
# Query: 181 EYMGKTGRLFPKVV 194
# EYMGKTGRLFPKVV
# Sbjct: 181 EYMGKTGRLFPKVV 194
#
#
# >BMEII0990
# Length = 194
#
# Score = 127 bits (318), Expect = 2e-29
# Identities = 63/185 (34%), Positives = 98/185 (52%)
#
# Query: 8 ICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVFSSYLD 67
# I + + + WV +R + RA K K + R ++ + +G+ +PL V + +
# Sbjct: 8 IVWSIGLVAWVVIRIPHQRRARKIKVARTARTLADRLALGAATVGLSVVPLVYVATGFPK 67
#
# Query: 68 SFNINLPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHP 127
# + + ++ L + LF HK LG NWS L+I+ HKLV +G+Y+ +RHP
# Sbjct: 68 FADYTFQPWMGWIGTLIELLFLWLFYASHKQLGKNWSVSLDIRREHKLVTDGLYRYVRHP 127
#
# Query: 128 MYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEFGDEYIEYMGKTG 187
# MY WLW I Q +L NW+ + G++ AILYF R+ EE ++ E FG Y EY + G
# Sbjct: 128 MYLSFWLWAIAQFFLLPNWIAGLAGLLGVAILYFYRIEHEEAMMREAFGSAYDEYSSRIG 187
#
# Query: 188 RLFPK 192
# R+ PK
# Sbjct: 188 RIIPK 192
#
#
# >SMc01203
# Length = 195
#
# Score = 120 bits (302), Expect = 1e-27
# Identities = 62/194 (31%), Positives = 107/194 (54%), Gaps = 8/194 (4%)
#
# Query: 4 NLWKICFIVMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVFS 63
# ++ +I +++ + W F+R+ Y RA + + R EK + +G+ +P V +
# Sbjct: 5 SIGEIAWVLGIVAWYFIRRPYERRAKRVRVVSHRRSTSEKLGLAAALLGLAIIPAFYVAT 64
#
# Query: 64 SYLDSFNINLPDSIRLFALI----VTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEG 119
# + + RL+A++ + L + +F + HK+LG NWS LEI+D H+L++ G
# Sbjct: 65 GIPEGAD----HPARLWAVVLGAVIFCLAMWVFRRTHKELGRNWSITLEIRDKHELIRRG 120
#
# Query: 120 IYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEFGDEY 179
# Y +RHPMY L + Q +L NWV + G+ +A+L+ +RV KEE +++E FG EY
# Sbjct: 121 PYALVRHPMYTSFLLMGVGQAFLLPNWVAGLAGLAGFAVLFLLRVDKEERMMMEMFGSEY 180
#
# Query: 180 IEYMGKTGRLFPKV 193
# +YM T R+ P +
# Sbjct: 181 RDYMADTKRIIPYI 194
#
#
# >MA1000
# Length = 202
#
# Score = 73.2 bits (178), Expect = 3e-13
# Identities = 59/187 (31%), Positives = 88/187 (46%), Gaps = 7/187 (3%)
#
# Query: 11 IVMFIIWVFVRKVYGTRAMKNKSKKKV---RPNFEKSLVFLNFIGMVFLPLTAVFSSYLD 67
# IV++I+ + R KN +K++ R + + I F A+ + L
# Sbjct: 18 IVIYIVLTVTGRFLSQRQRKNNRRKQLSQWRNIVKDYTAIVAVIATAFAMGLALLEAALR 77
#
# Query: 68 SFNINLPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHP 127
# + SI + +IVT + + K +G NWS I+E + +LV GIY +RHP
# Sbjct: 78 EDTVLPITSIIIGTVIVTGGWVVAWFANRK-IGTNWSPIIEKTNRQELVTSGIYSLVRHP 136
#
# Query: 128 MY-AHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEFGDEYIEYMGKT 186
# +Y + + + T S W + GI IL+ R+P EE+ L E FGDEYI YM KT
# Sbjct: 137 LYFSGFCILIGTNIYFCSKWAWIGTGIALITILF--RIPIEEKKLKERFGDEYIAYMHKT 194
#
# Query: 187 GRLFPKV 193
# L P V
# Sbjct: 195 KALIPWV 201
#
#
# >YDR410c
# Length = 239
#
# Score = 59.3 bits (142), Expect = 5e-09
# Identities = 37/91 (40%), Positives = 52/91 (56%), Gaps = 4/91 (4%)
#
# Query: 100 GNNWSAILEIK--DGHKLVKEGIYKNIRHPMYAHLWLWVI-TQGIILSNWVVLIFGIVAW 156
# G+++S I++ K H LVK G+Y RHP Y + W I TQ ++L+ ++IF V W
# Sbjct: 144 GHSFSHIVKTKKESDHVLVKTGVYSWSRHPSYLGFFWWAIGTQLLLLNPLSLVIFIFVLW 203
#
# Query: 157 AILYFIRVPKEEELLIEEFGDEYIEYMGKTG 187
# + R+ EE+ LIE F EYIEY K G
# Sbjct: 204 KF-FSDRIRVEEKYLIEFFSAEYIEYKNKVG 233
#
#
# >CAC3412
# Length = 182
#
# Score = 59.3 bits (142), Expect = 5e-09
# Identities = 54/192 (28%), Positives = 89/192 (46%), Gaps = 20/192 (10%)
#
# Query: 8 ICFIVMFIIWVFVR-KVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVFSSYL 66
# + I+ FI+ + +R +++ + M S K ++ LV F G+ SY
# Sbjct: 4 VMLIIYFILLISIRMQMHKAQKMSRTSSKDIKLILISLLVIGVFCGV----------SYE 53
#
# Query: 67 DSFNINLPDSIRLFALIVTFLNIGLFTKIHKDLGN-NWSAILEIKDGHKLVKEGIYKNIR 125
# + N S + I+ +++ + K KDLG NW+ +DG +LV G+Y IR
# Sbjct: 54 FNIRYNYKYSYVIGVGILYLISLFIHRKALKDLGGQNWADSSIPRDGAELVTTGLYSVIR 113
#
# Query: 126 HPMYAHLWLWVITQGIILSNWVVLIFGI---VAWAILYFIRVPKEEELLIEEFGDEYIEY 182
# HP+Y L I +GI +S G+ Y I+ KEEE L + +G++YI+Y
# Sbjct: 114 HPIY----LAFILEGISVSLASPYFIGVGICECSLCFYRIKFSKEEEYLEKRYGNKYIKY 169
#
# Query: 183 MGKTG-RLFPKV 193
# K R+ P +
# Sbjct: 170 KEKVKYRIIPYI 181
#
#
# >SPAC10F6.12c
# Length = 236
#
# Score = 58.5 bits (140), Expect = 8e-09
# Identities = 33/97 (34%), Positives = 51/97 (52%), Gaps = 4/97 (4%)
#
# Query: 100 GNNWSAILEIKDG--HKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWV-VLIFGIVAW 156
# G ++S I+ K H LV +GIY +RHP Y ++W + ++L N+V L+F +V W
# Sbjct: 140 GQSFSHIVASKRNKDHLLVTDGIYAYVRHPSYVGFFIWALGTQMLLGNFVSTLLFSLVLW 199
#
# Query: 157 AILYFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKV 193
# + R+ EE L+ FGD Y +Y K P +
# Sbjct: 200 K-FFSQRITTEEAYLVSFFGDSYEQYRKKVPSGIPLI 235
#
#
# >RSc2022
# Length = 219
#
# Score = 53.5 bits (127), Expect = 3e-07
# Identities = 36/103 (34%), Positives = 57/103 (54%), Gaps = 17/103 (16%)
#
# Query: 99 LGNNWSAILEIKDGHKLVKEGIYKNIRHPMY----AHLWLWVIT----QGIILSNWVVLI 150
# LG +S ++ I+ GH+LV +G+Y +R+P Y A+ WV+ G++L+ ++LI
# Sbjct: 125 LGKRFSGLVAIQPGHQLVTDGVYGVVRNPSYLGLLANTLGWVLAFRSLAGVVLT--LLLI 182
#
# Query: 151 FGIVAWAILYFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKV 193
# +VA R+ EE LL +FG+ Y Y +T RL P V
# Sbjct: 183 PPLVA-------RIRAEEALLRTQFGEAYDAYCARTWRLIPGV 218
#
#
# >PH1225
# Length = 173
#
# Score = 48.1 bits (113), Expect = 1e-05
# Identities = 53/170 (31%), Positives = 81/170 (47%), Gaps = 15/170 (8%)
#
# Query: 29 MKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVFSSYLDSFNINLPDSIRLFALIVTFLN 88
# M++ S+++ + E V LNF+G+V P A S +F+ L RLF +F
# Sbjct: 1 MESSSREEEKDPDEGERV-LNFLGIV--PKVAKVSFLYIAFSALLE---RLFTFDFSFPR 54
#
# Query: 89 IG---LFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGI-ILS 144
# IG +F I + K G KL+K G Y +RHP+Y +W +I G ++
# Sbjct: 55 IGGILVFVGIVLWAICYFQVSKAYKAG-KLLKSGCYSVVRHPIYT-IWGVLILPGFSLVI 112
#
# Query: 145 NWVVLIFGIVAW-AILYFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPKV 193
# +L +V W +ILY+I +EE L FG E+ EY + R P +
# Sbjct: 113 GGFMLGLPVVYWISILYYIE--EEERFLHVRFGKEWEEYASRVPRFIPNL 160
#
#
# >PM2013
# Length = 145
#
# Score = 46.2 bits (108), Expect = 4e-05
# Identities = 32/110 (29%), Positives = 54/110 (49%), Gaps = 10/110 (9%)
#
# Query: 89 IGLFTKIHKDLGNN-----WSAI-----LEIKDGHKLVKEGIYKNIRHPMYAHLWLWVIT 138
# +GLF I +G+ W A + ++ LV GIY+ R+PMY L L ++
# Sbjct: 34 VGLFILISGIIGSGSLWQFWQAKTTVDPIRLEKSSALVVSGIYQFSRNPMYLSLALLLLA 93
#
# Query: 139 QGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEFGDEYIEYMGKTGR 188
# G+ L++ ++F +V + ++ EE L + FGD Y++Y K R
# Sbjct: 94 WGLWLASLSAVLFLVVFVFCITQFQIKPEERQLEKLFGDAYLDYKQKVRR 143
#
#
# >NMB0883
# Length = 169
#
# Score = 45.8 bits (107), Expect = 6e-05
# Identities = 24/102 (23%), Positives = 50/102 (48%), Gaps = 1/102 (0%)
#
# Query: 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMY-AHLW 133
# + I L + + + + I K LG W+ + I H++ + ++K RHP Y ++
# Sbjct: 68 NGISLIGTLTVMASFVILSLIIKQLGEIWTVKIYILPNHQINRSWLFKTFRHPNYFLNII 127
#
# Query: 134 LWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEF 175
# +I ++ W VL+ G+ + ++ F R+ +EE+ + F
# Sbjct: 128 PELIGIALLCQAWYVLLIGLPIYLLVLFKRIRQEEQAMATLF 169
#
#
# >NMA1102
# Length = 169
#
# Score = 45.8 bits (107), Expect = 6e-05
# Identities = 24/102 (23%), Positives = 50/102 (48%), Gaps = 1/102 (0%)
#
# Query: 75 DSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEGIYKNIRHPMY-AHLW 133
# + I L + + + + I K LG W+ + I H++ + ++K RHP Y ++
# Sbjct: 68 NGISLIGTLTVMASFVILSLIIKQLGEIWTVKIYILPNHQINRSWLFKTFRHPNYFLNII 127
#
# Query: 134 LWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEF 175
# +I ++ W VL+ G+ + ++ F R+ +EE+ + F
# Sbjct: 128 PELIGIALLCQAWYVLLIGLPIYLLVLFKRIRQEEQAMATLF 169
#
#
# >AF2387
# Length = 144
#
# Score = 45.8 bits (107), Expect = 6e-05
# Identities = 25/74 (33%), Positives = 42/74 (55%), Gaps = 1/74 (1%)
#
# Query: 116 VKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELLIEEF 175
# V G Y +RHP + L +++ ++ + + LI G V +LYF + +EE +E+F
# Sbjct: 63 VTSGPYALVRHPEFLGHILVIVSLILLAQHAMSLITGAVLITLLYFAMI-EEERRNVEKF 121
#
# Query: 176 GDEYIEYMGKTGRL 189
# GD Y+EYM + R+
# Sbjct: 122 GDAYLEYMKRVPRV 135
#
#
# >MT1254
# Length = 224
#
# Score = 41.2 bits (95), Expect = 0.001
# Identities = 35/105 (33%), Positives = 54/105 (51%), Gaps = 13/105 (12%)
#
# Query: 82 LIVTFLNIGLFTKIHKDLGNNWSA-ILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQG 140
# L++T L I + I N ++A + ++ G L +G+YK +RHPMYA V+ G
# Sbjct: 116 LVMTGLGIAMLVVIQ----NRYAASTVRVEAGQILASDGLYKIVRHPMYA--GNVVMMTG 169
#
# Query: 141 IIL---SNWVVLIFGIVAWAILYFIRVPKEEELLIEEFGDEYIEY 182
# I L S W + I +V ++ R+ EE+LL +E Y EY
# Sbjct: 170 IPLALGSYWAMFI--LVPGTLVLVFRILDEEKLLTQELSG-YREY 211
#
#
# >BS_ypbQ
# Length = 168
#
# Score = 40.8 bits (94), Expect = 0.002
# Identities = 22/75 (29%), Positives = 42/75 (55%)
#
# Query: 99 LGNNWSAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAI 158
# LG W+ + + G +LVK+G YK ++HP YA + L ++ ++ +V + + A+
# Sbjct: 90 LGAYWNTKILVVPGVELVKKGPYKWMKHPNYAVVILEILLIPLLYQAYVTMCLFSIFNAV 149
#
# Query: 159 LYFIRVPKEEELLIE 173
# L +R+ E++ L E
# Sbjct: 150 LLSVRIRAEDKALQE 164
#
#
# >BMEI2009
# Length = 173
#
# Score = 38.9 bits (89), Expect = 0.007
# Identities = 25/96 (26%), Positives = 46/96 (47%), Gaps = 3/96 (3%)
#
# Query: 99 LGNNWSAI-LEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLI-FGIVAW 156
# +G W + + + ++V+ G Y R+P+Y + + G + +V FG++ +
# Sbjct: 26 IGRMWCTLYIGGRKSAEIVQSGPYSVTRNPLYVFSSIGAVGIGAQTGSLIVAAAFGVLCY 85
#
# Query: 157 AILYFIRVPKEEELLIEEFGDEYIEYMGKTGRLFPK 192
# + + I + EE+ L + FG Y Y K R FPK
# Sbjct: 86 -LAFSIVIRTEEKFLKQNFGRPYEAYCAKVPRFFPK 120
#
#
# >BH0618
# Length = 186
#
# Score = 38.1 bits (87), Expect = 0.012
# Identities = 41/172 (23%), Positives = 72/172 (41%), Gaps = 14/172 (8%)
#
# Query: 5 LWKICFIVMFIIWVFVRKVYGTRAMK---NKSKKKVRPNFEKSLVFLNFIGMVFLPLTAV 61
# +W FI + I+ V + K +K +V K LV L+ G F+ L
# Sbjct: 2 IWVYAFISLVIVQRLVEVGLANQNAKWIRSKGGYEVGQTHYKYLVLLH--GFFFVSLITE 59
#
# Query: 62 FSSYLDSFNI--NLPDSIRLFALIVTFLNIGLFTKIHKDLGNNWSAILEIKDGHKLVKEG 119
# + +F++ +P + LFA I+ + LG W+ + I ++ G
# Sbjct: 60 VTIKGVAFDLWSAIPFAWFLFAQILRLWALS-------SLGRFWNTRIMILPDANVIASG 112
#
# Query: 120 IYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIRVPKEEELL 171
# Y+ I+HP YA + + + + +V + AI+ +IR+ EEE L
# Sbjct: 113 PYRYIKHPNYAVVIIEIAMLPLFFKAYVTAFLFSLLNAIVLYIRIHTEEEAL 164
#
#
# >FN0070
# Length = 686
#
# Score = 31.2 bits (69), Expect = 1.4
# Identities = 21/91 (23%), Positives = 44/91 (48%), Gaps = 3/91 (3%)
#
# Query: 104 SAILEIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVAWAILYFIR 163
# + I++I + K+++E I ++ A + ++ + ++N V F IV F+
# Sbjct: 208 NVIIDISERRKMIEEMINNSLLEDEKADVDKALLDE---VTNLVEHPFAIVGTFSEEFLE 264
#
# Query: 164 VPKEEELLIEEFGDEYIEYMGKTGRLFPKVV 194
# VP+E ++ + Y + K G+L PK +
# Sbjct: 265 VPQEVLIISMKVHQRYFPILNKKGKLLPKFI 295
#
#
# >AGc3597
# Length = 295
#
# Score = 31.2 bits (69), Expect = 1.4
# Identities = 20/90 (22%), Positives = 42/90 (46%), Gaps = 8/90 (8%)
#
# Query: 108 EIKDGHKLVKEGIYKNIRHPMYAHLWLWVITQGIILSNWVVLIFGIVA------WAILYF 161
# E K G + + G+++ RHP Y WL+ + ++ VL + +A W +++
# Sbjct: 199 EAKTG--VCETGLWRYSRHPNYFFEWLFWCSFPLLAIQEQVLSWASLAAPVMMYWLLVHV 256
#
# Query: 162 IRVPKEEELLIEEFGDEYIEYMGKTGRLFP 191
# +P EE +++ G+++ + FP
# Sbjct: 257 SGIPPLEEHMLKSRGEKFRALQRRVNAFFP 286
#
#
# >MYPU_1770_2
# Length = 412
#
# Score = 29.6 bits (65), Expect = 4.2
# Identities = 32/134 (23%), Positives = 52/134 (37%), Gaps = 22/134 (16%)
#
# Query: 2 NENLWKICFI---VMFIIWVFVRKVYGTRAMKNKSKKKVRPNFEKSLVFLNFIGMVFLPL 58
# +E+++KI I V I++ + + + NK KK SL F NF V +
# Sbjct: 266 DEDIFKIILINSSVTAPIYITNELIENAKVIINKYKKLYFKFLNLSLSF-NFDDNVRYMV 324
#
# Query: 59 TAVFSSYLDSFNINL------------PDSIRLFALIVTFLNIGLFTKIHKDLGNN---- 102
# + SFN+ L D + + + ++ FLN +I KD N
# Sbjct: 325 RKIADKDFSSFNLKLNEYIKAYNTSLEADKLTIVSSVIHFLNFSFIEQIEKDFRKNKKIY 384
#
# Query: 103 --WSAILEIKDGHK 114
# W L+ K+ K
# Sbjct: 385 DIWQGFLKQKNYEK 398
#
#
# >AGc3120
# Length = 218
#
# Score = 28.9 bits (63), Expect = 7.1
# Identities = 16/51 (31%), Positives = 25/51 (48%), Gaps = 4/51 (7%)
#
# Query: 29 MKNKSKKKVRPNFEKSLVFLNFIGMVFLPLTAVFSSYLDSFNINLPDSIRL 79
# +KN + +++R + + IG+ F PL S FNIN PD + L
# Sbjct: 162 LKNDANRRIRAFLARHVT----IGVAFPPLETARGSLDPFFNINTPDELAL 208
#
#
Database: myva
Posted date: Sep 17, 2002 10:27 AM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.329 0.146 0.463
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,743,644
Number of Sequences: 192987
Number of extensions: 991729
Number of successful extensions: 3679
Number of sequences better than 10.0: 76
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 37
Number of HSP's that attempted gapping in prelim test: 3620
Number of HSP's gapped (non-prelim): 81
length of query: 194
length of database: 59,019,183
effective HSP length: 104
effective length of query: 90
effective length of database: 38,948,535
effective search space: 3505368150
effective search space used: 3505368150
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 62 (28.5 bits)
S2: 62 (28.5 bits)