R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 38 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|11358918|pir||T50671 villin 1 [imported] - Arabidopsis thaliana
>gi|3415113|gb|AAC31605.1| (AF081201) villin 1 [Arabidopsis
thaliana]
Length = 910
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | || 910
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 277 (97.5 bits), Expect = 5.3e-22, P = 5.3e-22
Identities = 77/174 (44%), Positives = 98/174 (56%), Frame = +1
Query: 19 KXSRRXHNRTPLKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGDRSLSS- 195
K S + + + ++ S+ + S SV SNG R SP S L + D + SS
Sbjct: 739 KTSTKRSSGSQYRSQSKDNASRDLQSRSVSSNGSERGVSPCSSEKLLSLSSAEDMTNSSN 798
Query: 196 STPVVKKLFEGSPSQSSAGKTMPQSGSPATELSS-SDETASFPQKDRNVDGEN--TAIYP 366
STPVVKKLF S+S P G E SS SD + P+ N D + + Y
Sbjct: 799 STPVVKKLF----SESLV--VDPNDGVARQESSSKSDISKQKPRVGINSDLSSLESLAYS 852
Query: 367 YERLRVVSANPVTGIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
YE+LRV S PVT ID T+RE YL+ +EF E+F M KS FY LP+WKQNKLK+SL LF
Sbjct: 853 YEQLRVDSQKPVTDIDATRREAYLTEKEFEERFGMAKSEFYALPKWKQNKLKISLHLF 910
>gi|4567214|gb|AAD23629.1|AC007113_2 (AC007113) putative villin [Arabidopsis
thaliana]
Length = 898
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | 898
0 150 300 450 600 750
Plus Strand HSPs:
Score = 276 (97.2 bits), Expect = 6.7e-22, P = 6.7e-22
Identities = 77/174 (44%), Positives = 98/174 (56%), Frame = +1
Query: 19 KXSRRXHNRTPLKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGDRSLSS- 195
K S + + + ++ S+ + S SV SNG R SP S L + D + SS
Sbjct: 727 KTSTKRSSGSQYRSQSKDNASRDLQSRSVSSNGSERGVSPCSSEKLLSLSSAEDMTNSSN 786
Query: 196 STPVVKKLFEGSPSQSSAGKTMPQSGSPATELSS-SDETASFPQKDRNVDGEN--TAIYP 366
STPVVKKLF S+S P G E SS SD + P+ N D + + Y
Sbjct: 787 STPVVKKLF----SESLL--VDPNDGVARQESSSKSDISKQKPRVGINSDLSSLESLAYS 840
Query: 367 YERLRVVSANPVTGIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
YE+LRV S PVT ID T+RE YL+ +EF E+F M KS FY LP+WKQNKLK+SL LF
Sbjct: 841 YEQLRVDSQKPVTDIDATRREAYLTEKEFEERFGMAKSEFYALPKWKQNKLKISLHLF 898
>gi|8777365|dbj|BAA96955.1| (AB019233) villin [Arabidopsis thaliana]
Length = 962
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | | 962
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 241 (84.8 bits), Expect = 4.1e-18, P = 4.1e-18
Identities = 54/142 (38%), Positives = 88/142 (61%), Frame = +1
Query: 142 PSSAGSDLRQSGDRS-LSSSTPVVKKLFEGS---PSQSSAGKTMPQSGSPATELSSSDET 309
P S DL + +S +++ T + +K S P+ S+ + Q+ +P + +++E
Sbjct: 821 PKSHAPDLSKIAPKSAIAARTALFEKPTPTSQEPPTSPSSSEATNQAEAPKSTSETNEEE 880
Query: 310 A----SFPQKDRNVDGENTA-IYPYERLRVVSANPVTGIDLTKREVYLSNEEFREKFRMP 474
A + K+ + E++ +PYERL+ S +PV+ +DLT+RE YL++ EF+EKF M
Sbjct: 881 AMSSINEDSKEEEAEEESSLPTFPYERLKTDSEDPVSDVDLTRREAYLTSVEFKEKFEMT 940
Query: 475 KSAFYKLPRWKQNKLKMSLDLF 540
K+ FYKLP+WKQNKLKMS++LF
Sbjct: 941 KNEFYKLPKWKQNKLKMSVNLF 962
>gi|7488222|pir||T14076 probable villin - Arabidopsis thaliana
>gi|3093294|emb|CAA73320.1| (Y12782) putative villin [Arabidopsis
thaliana] >gi|5730126|emb|CAB52460.1| (AL109796) putative villin
[Arabidopsis thaliana] >gi|7269916|emb|CAB81009.1| (AL161576)
putative villin [Arabidopsis thaliana]
Length = 974
Frame 1 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 974
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 235 (82.7 bits), Expect = 1.8e-17, P = 1.8e-17
Identities = 50/117 (42%), Positives = 69/117 (58%), Frame = +1
Query: 190 SSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETASFPQKDRNVDGENTAIYPY 369
S TP S Q + + GS ++ + S T K+ D E+ +PY
Sbjct: 860 SPKTPESPAPESNSKEQEEKKENDKEEGSMSSRIESL--TIQEDAKEGVEDEEDLPAHPY 917
Query: 370 ERLRVVSANPVTGIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
+RL+ S +PV+ ID+T+RE YLS+EEF+EKF M K AFYKLP+WKQNK KM++ LF
Sbjct: 918 DRLKTTSTDPVSDIDVTRREAYLSSEEFKEKFGMTKEAFYKLPKWKQNKFKMAVQLF 974
>gi|11358920|pir||T45819 villin 3 homolog F28O9.260 - Arabidopsis thaliana
(fragment) >gi|6735320|emb|CAB68147.1| (AL137080) villin 3 fragment
[Arabidopsis thaliana]
Length = 383
Frame 1 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | 383
0 150 300
Plus Strand HSPs:
Score = 214 (75.3 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 57/160 (35%), Positives = 83/160 (51%), Frame = +1
Query: 61 NSRPST--PDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGDRSLSSSTPVVKKLFEGSP 234
NS PS+ P ++ ++ R + + + ++ ++S D S S+ K E
Sbjct: 225 NSSPSSKSPPRRSGLTSQASQRAAAVAALSQVLTAEKKKSPDTSPSAEAKDEKAFSEVEA 284
Query: 235 SQSSAGKTMPQSGSPATELSSSDETASFPQKDRNVDGENTAI-YPYERLRVVSANPVTGI 411
++ + + SPA E S+ E A Q D V E T + + YERL+ S PVTGI
Sbjct: 285 TEEATEAKEEEEVSPAAEASA--EEAKPKQDDSEV--ETTGVTFTYERLQAKSEKPVTGI 340
Query: 412 DLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
D +RE YLS EF+ F M K +FYKLP WKQ+ LK +LF
Sbjct: 341 DFKRREAYLSEVEFKTVFGMEKESFYKLPGWKQDLLKKKFNLF 383
>gi|11358922|pir||T50668 villin 3 [imported] - Arabidopsis thaliana
>gi|3415117|gb|AAC31607.1| (AF081203) villin 3 [Arabidopsis
thaliana]
Length = 966
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | | 966
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 207 (72.9 bits), Expect = 1.8e-14, P = 1.8e-14
Identities = 57/160 (35%), Positives = 84/160 (52%), Frame = +1
Query: 61 NSRPST--PDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGDRSLSSSTPVVKKLF-EGS 231
NS PS+ P ++ ++ R + + + ++ ++S D S S+ + F E
Sbjct: 807 NSSPSSKSPPRRSGLTSQASQRAAAVAALSQVLTAEKKKSPDTSPSAEAKDEETSFSEVE 866
Query: 232 PSQSSAGKTMPQSGSPATELSSSDETASFPQKDRNVDGENTAI-YPYERLRVVSANPVTG 408
++ + + SPA E S+ E A Q D V E T + + YERL+ S PVTG
Sbjct: 867 ATEEATEAKEEEEVSPAAEASA--EEAKPKQDDSEV--ETTGVTFTYERLQAKSEKPVTG 922
Query: 409 IDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
ID +RE YLS EF+ F M K +FYKLP WKQ+ LK +LF
Sbjct: 923 IDFKRREAYLSEVEFKTVFGMEKESFYKLPGWKQDLLKKKFNLF 966
>gi|2335104|gb|AAC02774.1| (AC002339) putative villin 2 [Arabidopsis thaliana]
Length = 955
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | | 955
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 201 (70.8 bits), Expect = 7.7e-14, P = 7.7e-14
Identities = 49/127 (38%), Positives = 66/127 (51%), Frame = +1
Query: 172 SGDRSLSSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELS-SSDETASFPQKDRNVDGE 348
S R +SS P + + A + E+S ++DET + + + D E
Sbjct: 829 SPTRRSTSSNPADDIPLTEAKDEEEASEVAGLEAKEEEEVSPAADETEAKQETEEQGDSE 888
Query: 349 ---NTAIYPYERLRVVSANPVTGIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKL 519
+ A + YE+LR S NPVTGID +RE YLS EEF+ F + K AF LPRWKQ+ L
Sbjct: 889 IQPSGATFTYEQLRAKSENPVTGIDFKRREAYLSEEEFQSVFGIEKEAFNNLPRWKQDLL 948
Query: 520 KMSLDLF 540
K DLF
Sbjct: 949 KKKFDLF 955
>gi|11358919|pir||T50669 villin 2 [imported] - Arabidopsis thaliana
>gi|3415115|gb|AAC31606.1| (AF081202) villin 2 [Arabidopsis
thaliana]
Length = 976
Frame 1 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | | 976
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 201 (70.8 bits), Expect = 7.9e-14, P = 7.9e-14
Identities = 49/127 (38%), Positives = 66/127 (51%), Frame = +1
Query: 172 SGDRSLSSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELS-SSDETASFPQKDRNVDGE 348
S R +SS P + + A + E+S ++DET + + + D E
Sbjct: 850 SPTRRSTSSNPADDIPLTEAKDEEEASEVAGLEAKEEEEVSPAADETEAKQETEEQGDSE 909
Query: 349 ---NTAIYPYERLRVVSANPVTGIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKL 519
+ A + YE+LR S NPVTGID +RE YLS EEF+ F + K AF LPRWKQ+ L
Sbjct: 910 IQPSGATFTYEQLRAKSENPVTGIDFKRREAYLSEEEFQSVFGIEKEAFNNLPRWKQDLL 969
Query: 520 KMSLDLF 540
K DLF
Sbjct: 970 KKKFDLF 976
>gi|11358975|pir||T50670 actin bundling protein ABP135 [imported] - trumpet
lily >gi|5880464|gb|AAD54660.1|AF088901_1 (AF088901) actin bundling
protein ABP135 [Lilium longiflorum]
Length = 965
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | | | 965
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 177 (62.3 bits), Expect = 2.9e-11, P = 2.9e-11
Identities = 57/178 (32%), Positives = 83/178 (46%), Frame = +1
Query: 13 KPKXSRRXHNRTP-LKANSRPSTPDGHGSISVFSNGR-GRSSSPIPSSAGSDLRQSGD-R 183
KP S + R + A S T + +S + R RS SP P G +SG+ +
Sbjct: 788 KPVRSGQSSQRAAAVAALSTVLTAEQKRGMSETTTKRFSRSPSPDPVVDGMKSEESGEPK 847
Query: 184 SLSS----STPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETASFPQKDRNVDGEN 351
S + S V+ E S + + + +E S +D Q + GE
Sbjct: 848 SEETENRKSVEVMDTKLEDSVDPHETSEEVVEDRRSISETSEADSEL---QHTDAIIGEQ 904
Query: 352 TAIYPYERLRVVSANPVTGIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSL 531
I+ YE++ S+NP GID KRE YLS+EEF M K FY+ P+WK++ K +
Sbjct: 905 --IFSYEQVNTKSSNPAKGIDFKKREAYLSDEEFHTILGMTKEEFYRQPKWKRDMQKKKV 962
Query: 532 DLF 540
DLF
Sbjct: 963 DLF 965
>gi|4519179|dbj|BAA75511.1| (AB023655) talin homologue [Dictyostelium
discoideum]
Length = 2614
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 2614
0 500 1000 1500 2000 2500
Plus Strand HSPs:
Score = 144 (50.7 bits), Expect = 3.3e-06, P = 3.3e-06
Identities = 51/176 (28%), Positives = 83/176 (47%), Frame = +1
Query: 13 KPKXSRRXHNRTPLK-ANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGDRSL 189
K + S + N +P K ++++P+T S+ + R +SP PS + +Q+
Sbjct: 2454 KKEYSDQTGNPSPAKDSDNKPTTSI---SVGITPTKRTTQASP-PSPPLTPTQQAAGTPT 2509
Query: 190 SSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETASFPQKDRNVDGENTAIYPY 369
P++KK +PSQ+ + P S +P ++ S + A P T Y
Sbjct: 2510 LPPRPLMKK---PAPSQAPSSPVAPVS-APVSK--PSPKPAPKPAAPTAAAPNKT--YTL 2561
Query: 370 ERLRVVSANPVTGIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
E L+ AN ID + E+YLS+EEF+ F +S +P WK+N +K L LF
Sbjct: 2562 EELKKKPAN----IDHSNLEIYLSDEEFKAVFNCERSELAAMPTWKRNNIKTKLGLF 2614
>gi|37845|emb|CAA28355.1| (X04657) villin C-terminus [Homo sapiens]
Length = 110
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | | 110
0 20 40 60 80 100
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 4.3e-06, P = 4.3e-06
Identities = 28/70 (40%), Positives = 40/70 (57%), Frame = +1
Query: 334 NVDGENTAIYPYERL--RVVSANPVTGIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWK 507
N+ I+P E+L + V P G+D +++E +LS E+F + F M +AF LPRWK
Sbjct: 41 NLSSGPLPIFPLEQLVNKPVEELP-EGVDPSRKEEHLSIEDFTQAFGMTPAAFSALPRWK 99
Query: 508 QNKLKMSLDLF 540
Q LK LF
Sbjct: 100 QQNLKKEKGLF 110
>gi|7305037 ref|NP_038542.1| erythrocyte protein band 4.9 [Mus musculus]
>gi|4959100|gb|AAD34233.1|AF079846_1 (AF079846) dematin 48 kDa
subunit [Mus musculus]
Length = 383
Frame 1 hits (HSPs): ________________
__________________________________________________
Database sequence: | | | | 383
0 150 300
Plus Strand HSPs:
Score = 131 (46.1 bits), Expect = 1.8e-05, P = 1.8e-05
Identities = 42/120 (35%), Positives = 51/120 (42%), Frame = +1
Query: 181 RSLSSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETASFPQKDRNVDGENTAI 360
RSL TP L G+ SS +P G T LS T F I
Sbjct: 268 RSLPDRTPFHTSLHSGTSKSSS----LPSYGR--TTLSRLQST-EFSPSGSEAGSPGLQI 320
Query: 361 YPYERLRVVSANPVT---GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSL 531
YPYE L V + G+D + E +LS E+F F M F KL WK+N+LK
Sbjct: 321 YPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKA 380
Query: 532 DLF 540
LF
Sbjct: 381 SLF 383
>gi|6730521|pdb|1QQV|A Chain A, Solution Structure Of The Headpiece Domain Of
Chicken Villin
Length = 67
Frame 1 hits (HSPs): ______________________________________________
__________________________________________________
Database sequence: | | | | | 67
0 20 40 60
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 2.8e-05, P = 2.8e-05
Identities = 24/61 (39%), Positives = 37/61 (60%), Frame = +1
Query: 361 YPYERLRVVSANPVT-GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDL 537
+P + L +A + G+D +++E +LS+E+F+ F M +SAF LP WKQ LK L
Sbjct: 7 FPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGL 66
Query: 538 F 540
F
Sbjct: 67 F 67
>gi|1688316|gb|AAB36957.1| (U78754) villin [Dictyostelium discoideum]
Length = 261
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | | 261
0 50 100 150 200 250
Plus Strand HSPs:
Score = 122 (42.9 bits), Expect = 0.00010, P = 0.00010
Identities = 25/61 (40%), Positives = 40/61 (65%), Frame = +1
Query: 358 IYPYERLRVVSANPV-TGIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLD 534
IY YE L A+P+ G+D TK + YL++E+F + F+M ++ + K+P WK+ +K L
Sbjct: 203 IYTYEELL---ADPLPAGVDSTKLDTYLNDEDFEKVFKMTRTEWLKIPAWKREGIKKELF 259
Query: 535 LF 540
LF
Sbjct: 260 LF 261
>gi|585044|sp|Q08495|DEMA_HUMAN DEMATIN (ERYTHROCYTE MEMBRANE PROTEIN BAND 4.9)
>gi|539573|pir||A48222 dematin 48K chain - human
>gi|347319|gb|AAA58438.1| (L19713) dematin [Homo sapiens]
Length = 383
Frame 1 hits (HSPs): ________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 383
0 150 300
__________________
Annotated Domains:
DOMO DM04001: VILLINHEADPIECE 252..382
Entrez Domain: POLY-GLU. 216..222
Entrez Domain: HEADPIECE (BY SIMILARITY). 318..383
PRODOM PD017047: 1..208
PRODOM PD151309: DEMA(1) Q13215(1) O14639(1) 230..318
PRODOM PD003485: VIL1(2) VILI(2) 320..382
__________________
Plus Strand HSPs:
Score = 124 (43.7 bits), Expect = 0.00013, P = 0.00013
Identities = 41/120 (34%), Positives = 52/120 (43%), Frame = +1
Query: 181 RSLSSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETASFPQKDRNVDGENTAI 360
RSL TP L +G+ SS +P+ G T LS T F I
Sbjct: 268 RSLPDRTPFHTSLHQGTSKSSS----LPRYGR--TTLSRLQST-EFSPSGSETGSPGLQI 320
Query: 361 YPYERLRVVSANPVT---GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSL 531
YPYE L V + G+D + E +LS E+F M F KL WK+N+LK
Sbjct: 321 YPYEVLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVSAMSPEEFGKLALWKRNELKKKA 380
Query: 532 DLF 540
LF
Sbjct: 381 SLF 383
>gi|4503581 ref|NP_001969.1| erythrocyte membrane protein band 4.9 (dematin);
Erythrocyte membrane protein band 49 (dematin) [Homo sapiens]
>gi|2119332|pir||I39062 dematin 52K chain - human
>gi|899541|gb|AAC50223.1| (U28389) dematin 52 kDa subunit [Homo
sapiens]
Length = 405
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | 405
0 150 300
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 26/64 (40%), Positives = 33/64 (51%), Frame = +1
Query: 358 IYPYERLRVVSANPVT---GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMS 528
IYPYE L V + G+D + E +LS E+F F M F KL WK+N+LK
Sbjct: 342 IYPYEMLVVTNKGRTKLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKK 401
Query: 529 LDLF 540
LF
Sbjct: 402 ASLF 405
Score = 49 (17.2 bits), Expect = 0.00065, Sum P(2) = 0.00065
Identities = 30/85 (35%), Positives = 37/85 (43%), Frame = +1
Query: 181 RSLSSSTPVVKKLFEGSPSQSSA---GKTMPQSGSPATELS-SSDETASFP-------QK 327
RSL TP L +G+ SS G+T S +TE S S ET S P Q+
Sbjct: 268 RSLPDRTPFHTSLHQGTSKSSSLPRYGRTT-LSRLQSTEFSPSGSETGS-PGLQNGEGQR 325
Query: 328 DRNVDGENTA------IYPYERLRVVS 390
R G + IYPYE L V +
Sbjct: 326 GRMDRGNSLPCVLEQKIYPYEMLVVTN 352
>gi|11427400 ref|XP_005317.1| erythrocyte membrane protein band 4.9 (dematin)
[Homo sapiens]
Length = 405
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 405
0 150 300
Plus Strand HSPs:
Score = 116 (40.8 bits), Expect = 0.0014, P = 0.0014
Identities = 38/106 (35%), Positives = 47/106 (44%), Frame = +1
Query: 223 EGSPSQSSAGKTMPQSGSPATELSSSDETASFPQKDRNVDGENTAIYPYERLRVVSANPV 402
E SPS S G PQ+G + D S P IYPYE L V +
Sbjct: 305 EFSPSGSETGSPGPQNGEG--QRGRMDRGNSLPCVLEQ------KIYPYEMLVVTNKGRT 356
Query: 403 T---GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
G+D + E +LS E+F F M F KL WK+N+LK LF
Sbjct: 357 KLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF 405
>gi|6005944 ref|NP_009058.1| villin 1; Villin-1 [Homo sapiens]
>gi|138529|sp|P09327|VIL1_HUMAN VILLIN 1 >gi|88989|pir||A31642
villin - human >gi|37843|emb|CAA31386.1| (X12901) villin (AA 1 -
827) [Homo sapiens]
Length = 827
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 827
0 150 300 450 600 750
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 0.0029, P = 0.0029
Identities = 28/70 (40%), Positives = 40/70 (57%), Frame = +1
Query: 334 NVDGENTAIYPYERL--RVVSANPVTGIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWK 507
N+ I+P E+L + V P G+D +++E +LS E+F + F M +AF LPRWK
Sbjct: 758 NLSSGPLPIFPLEQLVNKPVEELP-EGVDPSRKEEHLSIEDFTQAFGMTPAAFSALPRWK 816
Query: 508 QNKLKMSLDLF 540
Q LK LF
Sbjct: 817 QQNLKKEKGLF 827
>gi|12728761 ref|XP_010866.1| villin 1 [Homo sapiens]
Length = 827
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | 827
0 150 300 450 600 750
Plus Strand HSPs:
Score = 117 (41.2 bits), Expect = 0.0029, P = 0.0029
Identities = 28/70 (40%), Positives = 40/70 (57%), Frame = +1
Query: 334 NVDGENTAIYPYERL--RVVSANPVTGIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWK 507
N+ I+P E+L + V P G+D +++E +LS E+F + F M +AF LPRWK
Sbjct: 758 NLSSGPLPIFPLEQLVNKPVEELP-EGVDPSRKEEHLSIEDFTQAFGMTPAAFSALPRWK 816
Query: 508 QNKLKMSLDLF 540
Q LK LF
Sbjct: 817 QQNLKKEKGLF 827
>gi|505094|dbj|BAA06681.1| (D31883) similar to an actin bundling protein,
dematn. [Homo sapiens]
Length = 462
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 462
0 150 300 450
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.0030, P = 0.0030
Identities = 47/138 (34%), Positives = 65/138 (47%), Frame = +1
Query: 127 SSSPIPSSAGSDLRQSGDRSLSSSTPVVKKLFE-GSPSQSSAG----KTMPQSGSPATEL 291
S+S IPSS + L G L PV + S S G +T+P PA +
Sbjct: 328 SASHIPSSKTASLPGYGRNGLHR--PVSTDFAQYNSYGDVSGGVRDYQTLPDGHMPAMRM 385
Query: 292 SSSDETASFPQKDRNVDGENTAIYPYERLRVVSA--NPVTG-IDLTKREVYLSNEEFREK 462
D S P N+ I+PYE L V + N + +D T+ E +L+ E FRE
Sbjct: 386 ---DRGVSMP----NM--LEPKIFPYEMLMVTNRGRNKILREVDRTRLERHLAPEVFREI 436
Query: 463 FRMPKSAFYKLPRWKQNKLKMSLDLF 540
F M F +LP W++N +K LF
Sbjct: 437 FGMSIQEFDRLPLWRRNDMKKKAKLF 462
>gi|5921988 ref|NP_006711.1| actin-binding LIM protein 1, isoform s; LIM
actin-binding protein-1; LIM actin binding protein 1; abLIM;
limatin; actin-binding LIM protein [Homo sapiens]
Length = 462
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | 462
0 150 300 450
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.0030, P = 0.0030
Identities = 47/138 (34%), Positives = 65/138 (47%), Frame = +1
Query: 127 SSSPIPSSAGSDLRQSGDRSLSSSTPVVKKLFE-GSPSQSSAG----KTMPQSGSPATEL 291
S+S IPSS + L G L PV + S S G +T+P PA +
Sbjct: 328 SASHIPSSKTASLPGYGRNGLHR--PVSTDFAQYNSYGDVSGGVRDYQTLPDGHMPAMRM 385
Query: 292 SSSDETASFPQKDRNVDGENTAIYPYERLRVVSA--NPVTG-IDLTKREVYLSNEEFREK 462
D S P N+ I+PYE L V + N + +D T+ E +L+ E FRE
Sbjct: 386 ---DRGVSMP----NM--LEPKIFPYEMLMVTNRGRNKILREVDRTRLERHLAPEVFREI 436
Query: 463 FRMPKSAFYKLPRWKQNKLKMSLDLF 540
F M F +LP W++N +K LF
Sbjct: 437 FGMSIQEFDRLPLWRRNDMKKKAKLF 462
>gi|5921986 ref|NP_006710.1| actin-binding LIM protein 1, isoform m; LIM
actin-binding protein-1; LIM actin binding protein 1; abLIM;
limatin; actin-binding LIM protein [Homo sapiens]
Length = 626
Frame 1 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | | | 626
0 150 300 450 600
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.0046, P = 0.0046
Identities = 47/138 (34%), Positives = 65/138 (47%), Frame = +1
Query: 127 SSSPIPSSAGSDLRQSGDRSLSSSTPVVKKLFE-GSPSQSSAG----KTMPQSGSPATEL 291
S+S IPSS + L G L PV + S S G +T+P PA +
Sbjct: 492 SASHIPSSKTASLPGYGRNGLHR--PVSTDFAQYNSYGDVSGGVRDYQTLPDGHMPAMRM 549
Query: 292 SSSDETASFPQKDRNVDGENTAIYPYERLRVVSA--NPVTG-IDLTKREVYLSNEEFREK 462
D S P N+ I+PYE L V + N + +D T+ E +L+ E FRE
Sbjct: 550 ---DRGVSMP----NM--LEPKIFPYEMLMVTNRGRNKILREVDRTRLERHLAPEVFREI 600
Query: 463 FRMPKSAFYKLPRWKQNKLKMSLDLF 540
F M F +LP W++N +K LF
Sbjct: 601 FGMSIQEFDRLPLWRRNDMKKKAKLF 626
>gi|4504999 ref|NP_002304.1| actin-binding LIM protein 1, isoform a; LIM
actin-binding protein-1; LIM actin binding protein 1; abLIM;
limatin; actin-binding LIM protein [Homo sapiens]
>gi|2337952|gb|AAC51676.1| (AF005654) actin-binding
double-zinc-finger protein [Homo sapiens]
Length = 778
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | | | 778
0 150 300 450 600 750
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.0061, P = 0.0060
Identities = 47/138 (34%), Positives = 65/138 (47%), Frame = +1
Query: 127 SSSPIPSSAGSDLRQSGDRSLSSSTPVVKKLFE-GSPSQSSAG----KTMPQSGSPATEL 291
S+S IPSS + L G L PV + S S G +T+P PA +
Sbjct: 644 SASHIPSSKTASLPGYGRNGLHR--PVSTDFAQYNSYGDVSGGVRDYQTLPDGHMPAMRM 701
Query: 292 SSSDETASFPQKDRNVDGENTAIYPYERLRVVSA--NPVTG-IDLTKREVYLSNEEFREK 462
D S P N+ I+PYE L V + N + +D T+ E +L+ E FRE
Sbjct: 702 ---DRGVSMP----NM--LEPKIFPYEMLMVTNRGRNKILREVDRTRLERHLAPEVFREI 752
Query: 463 FRMPKSAFYKLPRWKQNKLKMSLDLF 540
F M F +LP W++N +K LF
Sbjct: 753 FGMSIQEFDRLPLWRRNDMKKKAKLF 778
>gi|5052038|gb|AAD38412.1|AF155547_1 (AF155547) dematin 52 kDa subunit [Mus
musculus]
Length = 405
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 405
0 150 300
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.0072, P = 0.0072
Identities = 38/106 (35%), Positives = 47/106 (44%), Frame = +1
Query: 223 EGSPSQSSAGKTMPQSGSPATELSSSDETASFPQKDRNVDGENTAIYPYERLRVVSANPV 402
E SPS S AG Q+G + D S P IYPYE L V +
Sbjct: 305 EFSPSGSEAGSPGLQNGEG--QRGRMDRGNSLPCVLEQ------KIYPYEMLVVTNKGRT 356
Query: 403 T---GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
G+D + E +LS E+F F M F KL WK+N+LK LF
Sbjct: 357 KLPPGVDRMRLERHLSAEDFSRVFAMSPEEFGKLALWKRNELKKKASLF 405
>gi|2392601|pdb|1VII| Thermostable Subdomain From Chicken Villin Headpiece,
Nmr, Minimized Average Structure
Length = 36
Frame 1 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | 36
0 20
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 0.0092, P = 0.0092
Identities = 18/35 (51%), Positives = 22/35 (62%), Frame = +1
Query: 436 LSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
LS+E+F+ F M +SAF LP WKQ LK LF
Sbjct: 2 LSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGLF 36
>gi|138530|sp|P02640|VILI_CHICK VILLIN >gi|86475|pir||A31822 villin - chicken
>gi|212863|gb|AAA49133.1| (J03781) villin [Gallus gallus]
Length = 826
Frame 1 hits (HSPs): ___ ____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 826
0 150 300 450 600 750
__________________
Annotated Domains:
DOMO DM00652: GELSOLINREPEAT 1..80
DOMO DM00213: GELSOLINREPEAT 82..199
DOMO DM00213: GELSOLINREPEAT 201..318
DOMO DM00652: GELSOLINREPEAT 382..461
DOMO DM00213: GELSOLINREPEAT 463..571
DOMO DM00213: GELSOLINREPEAT 573..681
Entrez Domain: CORE. 1..734
Entrez Domain: HEADPIECE. 735..826
Entrez Repetitive region: 1ST HALF. 7..369
Entrez Domain: HINGE REGION. 370..386
Entrez Repetitive region: 2ND HALF. 387..734
Entrez Domain: 1A. 7..126
Entrez Repetitive region: MOTIF B. 40..48
Entrez Repetitive region: MOTIF A. 62..78
Entrez Repetitive region: MOTIF C. 100..111
Entrez Domain: 1B. 127..249
Entrez Repetitive region: MOTIF B. 160..168
Entrez Repetitive region: MOTIF A. 174..190
Entrez Repetitive region: MOTIF C. 216..226
Entrez Domain: 1C. 250..369
Entrez Repetitive region: MOTIF B. 280..288
Entrez Repetitive region: MOTIF A. 295..311
Entrez Repetitive region: MOTIF C. 335..346
Entrez Domain: 2A. 387..507
Entrez Repetitive region: MOTIF B. 421..429
Entrez Repetitive region: MOTIF A. 443..459
Entrez Repetitive region: MOTIF C. 481..492
Entrez Domain: 2B. 508..614
Entrez Repetitive region: MOTIF B. 540..548
Entrez Repetitive region: MOTIF A. 554..570
Entrez Repetitive region: MOTIF C. 587..598
Entrez Domain: 2C. 615..734
Entrez Repetitive region: MOTIF B. 644..652
Entrez Repetitive region: MOTIF A. 658..673
Entrez Repetitive region: MOTIF C. 700..712
Entrez other site: ABSOLUTELY REQUIRED FOR ACTI 820..823
Entrez Domain: CRUCIAL FOR BINDING AN ACTIN FIL 129..137
Entrez Calcium binding region: PROBABLE. 782..793
Entrez Domain: POLYPHOSPHOINOSITIDE BINDING (BY 112..119
Entrez Domain: POLYPHOSPHOINOSITIDE BINDING (BY 138..146
PFAM Gelsolin: Gelsolin repeat. 27..76
PFAM Gelsolin: Gelsolin repeat. 148..188
PFAM Gelsolin: Gelsolin repeat. 265..309
PFAM Gelsolin: Gelsolin repeat. 408..457
PFAM Gelsolin: Gelsolin repeat. 528..568
PFAM Gelsolin: Gelsolin repeat. 631..672
PRINTS GELSOLIN1: Gelsolin motif I - 7 328..349
PRINTS GELSOLIN2: Gelsolin motif II - 7 417..433
PRINTS GELSOLIN3: Gelsolin motif III - 7 442..460
PRINTS GELSOLIN4: Gelsolin motif IV - 7 475..495
PRINTS GELSOLIN5: Gelsolin motif V - 7 528..548
PRINTS GELSOLIN6: Gelsolin motif VI - 7 587..606
PRINTS GELSOLIN7: Gelsolin motif VII - 7 641..663
PRINTS GELSOLIN8: Gelsolin motif VIII - 7 670..689
PRODOM PD001863: GELS(6) ADSV(4) VIL1(4) 17..136
PRODOM PD129227: ADSV(2) VIL1(2) VILI(2) 138..171
PRODOM PD129217: VIL1(2) 173..250
PRODOM PD001084: GELS(11) ADSV(4) CAPG(4) 254..350
PRODOM PD006389: ADSV(2) VIL1(2) 353..394
PRODOM PD001863: GELS(6) ADSV(4) VIL1(4) 401..528
PRODOM PD149667: ADSV(2) VIL1(2) VILI(2) 530..613
PRODOM PD001084: GELS(11) ADSV(4) CAPG(4) 619..720
PRODOM PD129202: VILI_CHICK 722..763
PRODOM PD003485: VIL1(2) VILI(2) 765..825
__________________
Plus Strand HSPs:
Score = 110 (38.7 bits), Expect = 0.024, Sum P(2) = 0.023
Identities = 24/61 (39%), Positives = 37/61 (60%), Frame = +1
Query: 361 YPYERLRVVSANPVT-GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDL 537
+P + L +A + G+D +++E +LS+E+F+ F M +SAF LP WKQ LK L
Sbjct: 766 FPLDVLVNTAAEDLPRGVDPSRKENHLSDEDFKAVFGMTRSAFANLPLWKQQNLKKEKGL 825
Query: 538 F 540
F
Sbjct: 826 F 826
Score = 38 (13.4 bits), Expect = 0.024, Sum P(2) = 0.023
Identities = 7/21 (33%), Positives = 12/21 (57%), Frame = +1
Query: 91 GSISVFSNGRGRSSSPIPSSA 153
G + V+ NG R+ P+S+
Sbjct: 494 GKMVVYENGSSRAGGTEPASS 514
>gi|7662330 ref|NP_055760.1| KIAA0843 protein [Homo sapiens]
>gi|4240175|dbj|BAA74866.1| (AB020650) KIAA0843 protein [Homo
sapiens]
Length = 683
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | 683
0 150 300 450 600
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.026, P = 0.026
Identities = 28/64 (43%), Positives = 37/64 (57%), Frame = +1
Query: 358 IYPYERLRVVSA--NPVT-GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMS 528
IYPYE L V + N + +D T+ E +LS EEF + F M S F +L WK+N+LK
Sbjct: 620 IYPYELLLVTTRGRNRLPKDVDRTRLERHLSQEEFYQVFGMTISEFDRLALWKRNELKKQ 679
Query: 529 LDLF 540
LF
Sbjct: 680 ARLF 683
>gi|7292243|gb|AAF47652.1| (AE003475) CG1141 gene product [Drosophila
melanogaster]
Length = 1111
Frame 1 hits (HSPs): ____ ___
__________________________________________________
Database sequence: | | | | | | | | | 1111
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 108 (38.0 bits), Expect = 0.041, Sum P(2) = 0.040
Identities = 25/60 (41%), Positives = 36/60 (60%), Frame = +1
Query: 361 YPYERLRVVSANPVT-GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDL 537
YP E V+ A P+ G++ T+ EVYL+ E+F+ ++ F +LP WKQ KLK L
Sbjct: 1054 YPLE---VLKARPLPEGVEPTRLEVYLNAEDFQAALGCSRAEFEQLPIWKQTKLKKERGL 1110
Query: 538 F 540
F
Sbjct: 1111 F 1111
Score = 41 (14.4 bits), Expect = 0.041, Sum P(2) = 0.040
Identities = 19/73 (26%), Positives = 32/73 (43%), Frame = +1
Query: 115 GRGRSSSPIPSSAGS--DLRQSGDRSLSSST----PVVKKLFEGSPSQSSAGKTMPQSGS 276
G +S S + +S+ S +S RSLS + P S S+S + PQ+
Sbjct: 104 GLAKSPSMMVTSSTSTNSTSKSALRSLSVNPEEEGPTSLSRSNSSSSESDGERKSPQNAK 163
Query: 277 PATELSSSDETAS 315
EL+++ A+
Sbjct: 164 QNKELANNKSAAA 176
>gi|7495839|pir||T25541 hypothetical protein C10H11.1 - Caenorhabditis elegans
>gi|1825748|gb|AAB42341.1| (U88311) similar in the last exon to a
probable calcium-binding domain found in villins [Caenorhabditis
elegans]
Length = 988
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | | | | 988
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 107 (37.7 bits), Expect = 0.053, P = 0.052
Identities = 24/80 (30%), Positives = 45/80 (56%), Frame = +1
Query: 301 DETASFPQKD-RNVDGENTAIYPYERLRVVSANPVTGIDLTKREVYLSNEEFREKFRMPK 477
D+ S P +D ++ E + E L+ ++ P G+D+ + E YL++++F + F++ +
Sbjct: 909 DDKPSDPPRDVSDLLKERCRTFSLEELKERTSLPA-GMDMRRLESYLTDDDFMKVFKIER 967
Query: 478 SAFYKLPRWKQNKLKMSLDLF 540
S FY WKQN + + LF
Sbjct: 968 SEFYAQKTWKQNDARKRVGLF 988
>gi|4836411|gb|AAD30430.1|AF118397_1 (AF118397) actin-binding protein homolog
[Entamoeba histolytica]
Length = 1602
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 1602
0 500 1000 1500
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.054, P = 0.053
Identities = 24/60 (40%), Positives = 36/60 (60%), Frame = +1
Query: 361 YPYERLRVVSANPVTGIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
Y Y L + P G+D + E YLS+EEF+E F + + FYK+ W ++KLK S+ L+
Sbjct: 1545 YTYAEL-ITKPRPF-GVDKSILETYLSDEEFQEVFGVSREEFYKMKPWCRDKLKHSVYLY 1602
>gi|549325|sp|P36418|VILI_DICDI PROTOVILLIN (100 KD ACTIN-BINDING PROTEIN)
>gi|479660|pir||S35061 protovillin - slime mold (Dictyostelium
discoideum) >gi|433877|emb|CAA52410.1| (X74387) protovillin
[Dictyostelium discoideum] >gi|449435|prf||1919264A F actin-capping
protein (protovillin) [Dictyostelium discoideum]
Length = 959
Frame 1 hits (HSPs): ________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | | 959
0 150 300 450 600 750 900
__________________
Annotated Domains:
DOMO DM00652: GELSOLINREPEAT 37..130
DOMO DM00213: GELSOLINREPEAT 132..251
DOMO DM00652: GELSOLINREPEAT 453..533
DOMO DM00213: GELSOLINREPEAT 535..650
DOMO DM00213: GELSOLINREPEAT 652..763
DOMO DM03951: 765..911
Entrez Domain: TAIL. 1..53
Entrez Domain: CORE. 54..832
Entrez Domain: PRO/THR-RICH NECK. 833..880
Entrez Domain: HEADPIECE. 881..959
Entrez Repetitive region: 1ST HALF. 54..429
Entrez Domain: HINGE REGION. 430..457
Entrez Repetitive region: 2ND HALF. 458..832
Entrez Domain: 1A. 54..185
Entrez Repetitive region: MOTIF B. 77..85
Entrez Repetitive region: MOTIF A (APPROXIMATE) 102..130
Entrez Repetitive region: MOTIF C. 154..165
Entrez Domain: 1B. 186..305
Entrez Repetitive region: MOTIF B. 216..224
Entrez Repetitive region: MOTIF A (APPROXIMATE) 230..246
Entrez Domain: 1C. 306..429
Entrez Repetitive region: MOTIF B. 338..346
Entrez Repetitive region: MOTIF A. 352..368
Entrez Repetitive region: MOTIF C. 392..403
Entrez Domain: 2A. 458..579
Entrez Repetitive region: MOTIF B. 492..500
Entrez Repetitive region: MOTIF A. 515..531
Entrez Repetitive region: MOTIF C. 553..564
Entrez Domain: 2B. 583..699
Entrez Repetitive region: MOTIF B. 617..625
Entrez Repetitive region: MOTIF A. 633..647
Entrez Repetitive region: MOTIF C. 665..676
Entrez Domain: 2C. 699..832
Entrez Repetitive region: MOTIF B. 726..734
Entrez Repetitive region: MOTIF A. 740..755
Entrez Repetitive region: MOTIF C. 781..793
Entrez Domain: 2 X 10 AA REPEATS OF T-P-K-P-I-T 840..860
Entrez Repetitive region: 1. 840..849
Entrez Repetitive region: 2. 851..860
PFAM Gelsolin: Gelsolin repeat. 64..116
PFAM Gelsolin: Gelsolin repeat. 204..244
PFAM Gelsolin: Gelsolin repeat. 309..366
PFAM Gelsolin: Gelsolin repeat. 479..529
PFAM Gelsolin: Gelsolin repeat. 603..647
PFAM Gelsolin: Gelsolin repeat. 713..754
PRINTS GELSOLIN1: Gelsolin motif I - 7 385..406
PRINTS GELSOLIN2: Gelsolin motif II - 7 488..504
PRINTS GELSOLIN3: Gelsolin motif III - 7 514..532
PRINTS GELSOLIN4: Gelsolin motif IV - 7 547..567
PRINTS GELSOLIN5: Gelsolin motif V - 7 605..625
PRINTS GELSOLIN6: Gelsolin motif VI - 7 665..684
PRINTS GELSOLIN7: Gelsolin motif VII - 7 723..745
PRINTS GELSOLIN8: Gelsolin motif VIII - 7 752..771
PRODOM PD129220: VILI_DICDI 1..193
PRODOM PD129227: ADSV(2) VIL1(2) VILI(2) 195..225
PRODOM PD202398: VILI_DICDI 227..336
PRODOM PD001084: GELS(11) ADSV(4) CAPG(4) 338..407
PRODOM PD129224: VILI_DICDI 409..469
PRODOM PD001863: GELS(6) ADSV(4) VIL1(4) 471..572
PRODOM PD202396: VILI_DICDI 574..606
PRODOM PD149667: ADSV(2) VIL1(2) VILI(2) 608..675
PRODOM PD001084: GELS(11) ADSV(4) CAPG(4) 699..807
PRODOM PD000651: VL2(74) O18758(34) MUC2(10) 818..898
PRODOM PD003485: VIL1(2) VILI(2) 901..958
__________________
Plus Strand HSPs:
Score = 106 (37.3 bits), Expect = 0.068, P = 0.065
Identities = 36/145 (24%), Positives = 64/145 (44%), Frame = +1
Query: 109 SNGRGRSSSPIPSSAGSDLRQSG---DRSLSSSTPVVKKLFEGSPSQSSAGKTMPQSGSP 279
SN G +S + ++G L+ + + +++ T K +P+ ++ P
Sbjct: 815 SNNSGPASPIMLPTSGVTLKPTTAATPKPITTPTVTTPKPIT-TPTVATLKTVTPAVTLK 873
Query: 280 ATELSSSDETASFPQKDRNVDGENTAIYPYERLRVVSANPVTGIDLTKREVYLSNEEFRE 459
T +++ + A+ T YP L+ + P ID + +YLS+EEF
Sbjct: 874 PTTVTTPSKVATTTNTSTPSPTTITTFYPLSVLKQKTNLP-NDIDKSCLHLYLSDEEFLS 932
Query: 460 KFRMPKSAFYKLPRWKQNKLKMSLDLF 540
F+M K F K P WK +L++ LF
Sbjct: 933 TFKMTKEIFQKTPAWKTKQLRVDNGLF 959
>gi|464522|sp|Q04870|T2FA_XENLA TRANSCRIPTION INITIATION FACTOR IIF, ALPHA
SUBUNIT (TFIIF-ALPHA) (TRANSCRIPTION INITIATION FACTOR RAP74)
>gi|479869|pir||S35551 transcription factor IIF chain RAP74 -
African clawed frog >gi|65030|emb|CAA78999.1| (Z17426)
transcription factor IIF subunit [Xenopus laevis]
Length = 524
Frame 1 hits (HSPs): __________
Annotated Domains: ___________________ __________ ___________________
__________________________________________________
Database sequence: | | | | | 524
0 150 300 450
__________________
Annotated Domains:
PRODOM PD017046: T2FA(3) Q17558(1) 10..191
PRODOM PD110393: T2FA_XENLA 212..243
PRODOM PD019144: T2FA(3) 257..306
PRODOM PD086216: T2FA_XENLA 332..380
PRODOM PD016175: T2FA(3) Q17558(1) 382..522
__________________
Plus Strand HSPs:
Score = 103 (36.3 bits), Expect = 0.070, P = 0.068
Identities = 34/96 (35%), Positives = 50/96 (52%), Frame = +1
Query: 16 PKXSRRXHNRTPLKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGDRSLSS 195
PK ++ + + + NSRP TP S G +SS + ++A S L QS R S
Sbjct: 374 PKKDKKGGSNSSSRGNSRPGTP---------SPDTGNTSSTLRAAA-SKLEQS-KRGTVS 422
Query: 196 STPVVKKL-FEGSPSQSSAGKTMPQSGSPATELSSSD 303
+TP K+L E P Q+++GK+ PQ S + SS D
Sbjct: 423 NTPAAKRLKMEAGP-QNTSGKSTPQPQSGKSTPSSGD 458
Score = 86 (30.3 bits), Expect = 6.3, P = 1.0
Identities = 30/92 (32%), Positives = 42/92 (45%), Frame = +1
Query: 52 LKANSRPSTPDGHGSISVFSNGRGRSSSPIPSS---------AGSDLRQSGDRSLSSSTP 204
++ P D G + S G R +P P + A S L QS R S+TP
Sbjct: 367 MQKKKTPPKKDKKGGSNSSSRGNSRPGTPSPDTGNTSSTLRAAASKLEQS-KRGTVSNTP 425
Query: 205 VVKKL-FEGSPSQSSAGKTMPQSGSPATELSSSD 303
K+L E P Q+++GK+ PQ S + SS D
Sbjct: 426 AAKRLKMEAGP-QNTSGKSTPQPQSGKSTPSSGD 458
>gi|6678573 ref|NP_033535.1| villin [Mus musculus]
>gi|2501654|sp|Q62468|VIL1_MOUSE VILLIN >gi|202366|gb|AAA40554.1|
(M98454) villin [Mus musculus]
Length = 827
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | | 827
0 150 300 450 600 750
Plus Strand HSPs:
Score = 105 (37.0 bits), Expect = 0.073, P = 0.071
Identities = 23/61 (37%), Positives = 34/61 (55%), Frame = +1
Query: 361 YPYERLRVVSANPVT-GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDL 537
+P E+L S + G+D +++E +LS E+F M +AF LPRWKQ +K L
Sbjct: 767 FPLEQLVNKSVEDLPEGVDPSRKEEHLSTEDFTRALGMTPAAFSALPRWKQQNIKKEKGL 826
Query: 538 F 540
F
Sbjct: 827 F 827
>gi|295671|gb|AAA35091.1| (L11275) selected as a weak suppressor of a mutant of
the subunit AC40 of DNA dependant RNA polymerase I and III
[Saccharomyces cerevisiae]
Length = 406
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 406
0 150 300
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.24, P = 0.22
Identities = 33/102 (32%), Positives = 46/102 (45%), Frame = +1
Query: 13 KPKXSRRXHNRTPLKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGD-RSL 189
K K + + ++S S+ S S S SSS SS+ SD S D S
Sbjct: 17 KEKEIEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESS 76
Query: 190 SSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETAS 315
SSS+ S S+SS+ SGS ++ SSSDE++S
Sbjct: 77 SSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSS 118
Score = 86 (30.3 bits), Expect = 4.5, P = 0.99
Identities = 38/125 (30%), Positives = 53/125 (42%), Frame = +1
Query: 13 KPKXSRRXHNRTPLKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGD-RSL 189
K K + + ++S S+ S S S SSS SS+ SD S D S
Sbjct: 17 KEKEIEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESS 76
Query: 190 SSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETASFPQ-----KDR-----NV 339
SSS+ S S+SS+ SGS ++ SSSDE++S + K R N
Sbjct: 77 SSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNE 136
Query: 340 DGENT 354
D + T
Sbjct: 137 DAKET 141
>gi|6322945 ref|NP_013018.1| nucleolar protein that is immunologically and
structurally related to rat Nopp140, a nonribosomal protein of the
nucleolus and coiled bodies.; Srp40p [Saccharomyces cerevisiae]
>gi|548976|sp|P32583|SR40_YEAST SUPPRESSOR PROTEIN SRP40
>gi|539364|pir||S38170 SRP40 protein - yeast (Saccharomyces
cerevisiae) >gi|450552|emb|CAA51946.1| (X73541) ORF YKR412
[Saccharomyces cerevisiae] >gi|486581|emb|CAA82171.1| (Z28317) ORF
YKR092c [Saccharomyces cerevisiae]
Length = 406
Frame 1 hits (HSPs): _________________
__________________________________________________
Database sequence: | | | | 406
0 150 300
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.24, P = 0.22
Identities = 33/102 (32%), Positives = 46/102 (45%), Frame = +1
Query: 13 KPKXSRRXHNRTPLKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGD-RSL 189
K K + + ++S S+ S S S SSS SS+ SD S D S
Sbjct: 17 KEKEIEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESS 76
Query: 190 SSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETAS 315
SSS+ S S+SS+ SGS ++ SSSDE++S
Sbjct: 77 SSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSS 118
Score = 86 (30.3 bits), Expect = 4.5, P = 0.99
Identities = 38/125 (30%), Positives = 53/125 (42%), Frame = +1
Query: 13 KPKXSRRXHNRTPLKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGD-RSL 189
K K + + ++S S+ S S S SSS SS+ SD S D S
Sbjct: 17 KEKEIEEKSSSSSSSSSSSSSSSSSSSSSSSSSGESSSSSSSSSSSSSSDSSDSSDSESS 76
Query: 190 SSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETASFPQ-----KDR-----NV 339
SSS+ S S+SS+ SGS ++ SSSDE++S + K R N
Sbjct: 77 SSSSSSSSSSSSSSDSESSSESDSSSSGSSSSSSSSSDESSSESESEDETKKRARESDNE 136
Query: 340 DGENT 354
D + T
Sbjct: 137 DAKET 141
>gi|4314369|gb|AAD15580.1| (AC006340) unknown protein [Arabidopsis thaliana]
Length = 598
Frame 1 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | | 598
0 150 300 450
Plus Strand HSPs:
Score = 96 (33.8 bits), Expect = 0.54, P = 0.41
Identities = 37/108 (34%), Positives = 51/108 (47%), Frame = +1
Query: 10 AKPKXSRRXHNRT---PLKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGD 180
++PK S + RT P + RP + +GH S S+G + S PSS+GS + S
Sbjct: 220 SRPKQSSGINGRTAHSPHREEKRPVSANGHSRPS--SSGSQMNHSR-PSSSGSKMNHSRP 276
Query: 181 RSLSSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETASFPQKDR 333
+ S P + GS QS A + SG PA+ S S S PQ R
Sbjct: 277 ATSGSQMPNSRPASSGSQMQSRA---VSGSGRPAS--SGSQMQNSRPQNSR 322
>gi|6322022 ref|NP_012097.1| serine-, threonine-rich protein; Yil169cp
[Saccharomyces cerevisiae] >gi|731896|sp|P40442|YIQ9_YEAST
HYPOTHETICAL 99.7 KDA PROTEIN IN SDL1 5'REGION PRECURSOR
>gi|1077767|pir||S50358 hypothetical protein YIL169c - yeast
(Saccharomyces cerevisiae) >gi|600808|emb|CAA87023.1| (Z46921)
unknown [Saccharomyces cerevisiae]
Length = 995
Frame 1 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | | | | 995
0 150 300 450 600 750 900
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.77, P = 0.53
Identities = 29/93 (31%), Positives = 47/93 (50%), Frame = +1
Query: 58 ANSRPSTPDGHGSISVFSNGRGRSSSPIP--SSAGSDLRQSGDRSLSSSTPVVKKLFEGS 231
+ S ST D S+S S+ SS + SS+ SD+ S +S SS++ V + + +
Sbjct: 124 SQSASSTSDVSSSVSQSSSSASDVSSSVSQSSSSASDVSSSVSQSASSASDVSSSVSQSA 183
Query: 232 PSQSSAGKTMPQSGSPATELSSSDETASFPQKD 330
S S ++ QS S A+++SSS +S D
Sbjct: 184 SSTSDVSSSVSQSSSSASDVSSSVSQSSSSASD 216
Score = 93 (32.7 bits), Expect = 2.2, P = 0.89
Identities = 29/89 (32%), Positives = 46/89 (51%), Frame = +1
Query: 58 ANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGS--DLRQSGDRSLSSSTPVVKKLFEGS 231
+ S S D S+S S+ SS + SA S D+ S +S SS++ V + + S
Sbjct: 138 SQSSSSASDVSSSVSQSSSSASDVSSSVSQSASSASDVSSSVSQSASSTSDVSSSVSQSS 197
Query: 232 PSQSSAGKTMPQSGSPATELSSS-DETAS 315
S S ++ QS S A+++SSS ++AS
Sbjct: 198 SSASDVSSSVSQSSSSASDVSSSVSQSAS 226
Score = 92 (32.4 bits), Expect = 2.9, P = 0.94
Identities = 29/89 (32%), Positives = 46/89 (51%), Frame = +1
Query: 58 ANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGS--DLRQSGDRSLSSSTPVVKKLFEGS 231
+ S S D S+S S+ SS + SA S D+ S +S SS++ V + + S
Sbjct: 96 SQSSSSVSDVSSSVSQSSSSASDVSSSVSQSASSTSDVSSSVSQSSSSASDVSSSVSQSS 155
Query: 232 PSQSSAGKTMPQSGSPATELSSS-DETAS 315
S S ++ QS S A+++SSS ++AS
Sbjct: 156 SSASDVSSSVSQSASSASDVSSSVSQSAS 184
>gi|7706763 ref|NP_056957.1| villin-like [Homo sapiens]
>gi|2289788|dbj|BAA21668.1| (D88154) villin-like protein [Homo
sapiens]
Length = 686
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 686
0 150 300 450 600
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.84, P = 0.57
Identities = 17/45 (37%), Positives = 26/45 (57%), Frame = +1
Query: 406 GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
G+D +RE YLS+ +F++ F K FY + W+Q + K L F
Sbjct: 642 GVDPARREFYLSDSDFQDIFGKSKEEFYSMATWRQRQEKKQLGFF 686
>gi|7513425|pir||JC5708 villin-like protein - human
Length = 686
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 686
0 150 300 450 600
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.84, P = 0.57
Identities = 17/45 (37%), Positives = 26/45 (57%), Frame = +1
Query: 406 GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
G+D +RE YLS+ +F++ F K FY + W+Q + K L F
Sbjct: 642 GVDPARREFYLSDSDFQDIFGKSKEEFYSMATWRQRQEKKQLGFF 686
>gi|12652965|gb|AAH00243.1|AAH00243 (BC000243) villin-like [Homo sapiens]
Length = 686
Frame 1 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | | 686
0 150 300 450 600
Plus Strand HSPs:
Score = 95 (33.4 bits), Expect = 0.84, P = 0.57
Identities = 17/45 (37%), Positives = 26/45 (57%), Frame = +1
Query: 406 GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLDLF 540
G+D +RE YLS+ +F++ F K FY + W+Q + K L F
Sbjct: 642 GVDPARREFYLSDSDFQDIFGKSKEEFYSMATWRQRQEKKQLGFF 686
>gi|11990772|emb|CAC19653.1| (AL158167) bA534G20.4 (supervillin) [Homo sapiens]
Length = 1084
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | | | | 1084
0 150 300 450 600 750 900 1050
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 0.84, P = 0.57
Identities = 24/61 (39%), Positives = 34/61 (55%), Frame = +1
Query: 358 IYPYERLRVVSANPVT-GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLD 534
IYP L + A P+ G+D K E+YL++E+F M + + LP WKQ LK +
Sbjct: 1026 IYP---LADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKG 1082
Query: 535 LF 540
LF
Sbjct: 1083 LF 1084
>gi|11359723|pir||T46707 proteophosphoglycan, membrane-associated [imported] -
Leishmania major (fragment) >gi|5420389|emb|CAB46680.1| (AJ243460)
proteophosphoglycan [Leishmania major]
Length = 383
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | 383
0 150 300
Plus Strand HSPs:
Score = 91 (32.0 bits), Expect = 1.1, P = 0.67
Identities = 29/123 (23%), Positives = 50/123 (40%), Frame = +1
Query: 4 PGAKPKXSRRXHNRTPLKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGDR 183
P + + P ++S PS S S+ SSS PSS+ S +
Sbjct: 19 PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSS 78
Query: 184 SL-SSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSS-SDETASFPQKDRNVDGENTA 357
S SSS+ +PS SS+ + S +P++ S+ S ++S P + +++
Sbjct: 79 SAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSS 138
Query: 358 IYP 366
P
Sbjct: 139 SAP 141
Score = 89 (31.3 bits), Expect = 1.9, P = 0.85
Identities = 27/106 (25%), Positives = 43/106 (40%), Frame = +1
Query: 4 PGAKPKXSRRXHNRTPLKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGDR 183
P + + P ++S PS S S+ SSS PSS+ S +
Sbjct: 111 PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSS 170
Query: 184 SL--SSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETAS 315
S SSS+ +PS SS+ + S +P++ SS+ +S
Sbjct: 171 SAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASS 216
Score = 89 (31.3 bits), Expect = 1.9, P = 0.85
Identities = 40/132 (30%), Positives = 55/132 (41%), Frame = +1
Query: 58 ANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGDRSL---SSSTPVVKKLFEG 228
++S PS S S+ SSS PSS+ S + S SSS P
Sbjct: 145 SSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAP 204
Query: 229 SPSQSSA----GKTMPQSGSPATELSSSDETASFPQKDRNVDGENTA-----IYPYERLR 381
S S SSA + P S S A SSS T P D + +++ Y Y+RL
Sbjct: 205 SSSSSSAPSASSSSAPSSSSSAPS-SSSTTTTMDPTPDPVLPSSSSSSSHADTYFYDRLY 263
Query: 382 VVSANPV-TGIDL 417
++ N TG+D+
Sbjct: 264 LLCPNAEETGVDM 276
Score = 83 (29.2 bits), Expect = 9.1, P = 1.0
Identities = 25/105 (23%), Positives = 44/105 (41%), Frame = +1
Query: 4 PGAKPKXSRRXHNRTP-LKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGD 180
P A + + P ++S PS+ + S+ SSS PS++ S S
Sbjct: 26 PSASSSSAPSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSSSSAPSASSSSAPSSSS 85
Query: 181 RSLSSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDETAS 315
+ S+S+ +PS SS+ S +P+ SS+ ++S
Sbjct: 86 SAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSS 130
Score = 83 (29.2 bits), Expect = 9.1, P = 1.0
Identities = 31/133 (23%), Positives = 53/133 (39%), Frame = +1
Query: 4 PGAKPKXSRRXHNRTPLKANSRPSTPDGHGSISVFSNGRGRSSSPIPSSAGSDLRQSGDR 183
P + + P ++S PS S S+ SSS PSS+ S +
Sbjct: 4 PSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSS-SSAPSASSSSAPSSSSSSAPSASSS 62
Query: 184 SL--SSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSS-SDETASFPQKDRNVDGENT 354
S SSS+ +PS SS+ + S +P++ S+ S ++S P + ++
Sbjct: 63 SAPSSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASSSSAPSSSSSAPSASS 122
Query: 355 AIYPYERLRVVSAN 396
+ P SA+
Sbjct: 123 SSAPSSSSSAPSAS 136
>gi|12735554 ref|XP_011894.1| supervillin, isoform 1 [Homo sapiens]
Length = 1600
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 1600
0 500 1000 1500
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 1.3, P = 0.73
Identities = 24/61 (39%), Positives = 34/61 (55%), Frame = +1
Query: 358 IYPYERLRVVSANPVT-GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLD 534
IYP L + A P+ G+D K E+YL++E+F M + + LP WKQ LK +
Sbjct: 1542 IYP---LADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKG 1598
Query: 535 LF 540
LF
Sbjct: 1599 LF 1600
>gi|7498324|pir||T33597 hypothetical protein E02H9.7 - Caenorhabditis elegans
>gi|3790714|gb|AAC68772.1| (AF099915) E02H9.7 gene product
[Caenorhabditis elegans]
Length = 262
Frame 1 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | | 262
0 50 100 150 200 250
Plus Strand HSPs:
Score = 88 (31.0 bits), Expect = 1.3, P = 0.73
Identities = 22/76 (28%), Positives = 36/76 (47%), Frame = +1
Query: 127 SSSPIPSSAGSDLRQSGDRSLSSSTPVVKKLFEGSPSQSSAGKTMPQSGSPATELSSSDE 306
S++P P ++ ++ S + S+TPV + L+ G S G P + PA E +SS
Sbjct: 33 STTPAPETSTPEINLSEEEG--STTPVQETLYGGEASSEEEGSITPVTDKPAEEEASSTS 90
Query: 307 TASFPQKDRNVDGENT 354
T +F V+ T
Sbjct: 91 TMAFSTTSTTVEVTTT 106
>gi|2947318|gb|AAC64695.1| (AF051850) supervillin [Homo sapiens]
Length = 1788
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 1788
0 500 1000 1500
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 1.5, P = 0.77
Identities = 24/61 (39%), Positives = 34/61 (55%), Frame = +1
Query: 358 IYPYERLRVVSANPVT-GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLD 534
IYP L + A P+ G+D K E+YL++E+F M + + LP WKQ LK +
Sbjct: 1730 IYP---LADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKG 1786
Query: 535 LF 540
LF
Sbjct: 1787 LF 1788
>gi|4507323 ref|NP_003165.1| supervillin, isoform 1; membrane-associated
F-actin binding protein p205; archvillin [Homo sapiens]
>gi|2961252|gb|AAC64696.1| (AF051851) supervillin [Homo sapiens]
Length = 1788
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 1788
0 500 1000 1500
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 1.5, P = 0.77
Identities = 24/61 (39%), Positives = 34/61 (55%), Frame = +1
Query: 358 IYPYERLRVVSANPVT-GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLD 534
IYP L + A P+ G+D K E+YL++E+F M + + LP WKQ LK +
Sbjct: 1730 IYP---LADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKG 1786
Query: 535 LF 540
LF
Sbjct: 1787 LF 1788
>gi|7513540|pir||T08878 supervillin P205 - bovine >gi|2668623|gb|AAC48783.1|
(AF025996) supervillin; P205 [Bos taurus]
Length = 1792
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 1792
0 500 1000 1500
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 1.5, P = 0.77
Identities = 24/61 (39%), Positives = 34/61 (55%), Frame = +1
Query: 358 IYPYERLRVVSANPVT-GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLD 534
IYP L + A P+ G+D K E+YL++E+F M + + LP WKQ LK +
Sbjct: 1734 IYP---LADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKG 1790
Query: 535 LF 540
LF
Sbjct: 1791 LF 1792
>gi|11430808 ref|XP_005790.1| supervillin [Homo sapiens]
Length = 1821
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | 1821
0 500 1000 1500
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 1.5, P = 0.78
Identities = 24/61 (39%), Positives = 34/61 (55%), Frame = +1
Query: 358 IYPYERLRVVSANPVT-GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLD 534
IYP L + A P+ G+D K E+YL++E+F M + + LP WKQ LK +
Sbjct: 1763 IYP---LADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKG 1819
Query: 535 LF 540
LF
Sbjct: 1820 LF 1821
>gi|7303127|gb|AAF58192.1| (AE003813) CG10228 gene product [Drosophila
melanogaster]
Length = 1945
Frame 1 hits (HSPs): _____
__________________________________________________
Database sequence: | | | | | 1945
0 500 1000 1500
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 1.6, P = 0.80
Identities = 37/135 (27%), Positives = 63/135 (46%), Frame = +1
Query: 25 SRRXHNRTPLKANSRPSTPDG---HGSISVFSNGRGRSSSPIPSSAGSDLRQSGDRSLSS 195
S R +++P++ +S S G H S S +SS+ SS+ SD+R G + SS
Sbjct: 342 SSRSRSKSPVRNSSSRSGKSGSSSHSSSSSRKRSESKSSTTSSSSSSSDVRHKGVTASSS 401
Query: 196 STPVVKKLFEGSPSQSSAGKTMPQSGSP-ATELSSSDETASFPQKDRNVDGENTAIY--P 366
+ P VK+ G + + + + ++GSP + S +S P K + ++
Sbjct: 402 NQPTVKR--SGKITSKDSDRYV-RNGSPLGSAKRKSSSPSSSPSKSKRSTSHKSSSSRGK 458
Query: 367 YERLRVVSANPV-TGIDL 417
LR S +PV +DL
Sbjct: 459 TSSLRSRSRSPVFMDVDL 476
>gi|11496982 ref|NP_068506.1| supervillin, isoform 2; membrane-associated
F-actin binding protein p205; archvillin [Homo sapiens]
>gi|4262541|gb|AAD14682.1| (AF109135) archvillin [Homo sapiens]
Length = 2214
Frame 1 hits (HSPs): __
__________________________________________________
Database sequence: | | | | | | 2214
0 500 1000 1500 2000
Plus Strand HSPs:
Score = 97 (34.1 bits), Expect = 1.8, P = 0.84
Identities = 24/61 (39%), Positives = 34/61 (55%), Frame = +1
Query: 358 IYPYERLRVVSANPVT-GIDLTKREVYLSNEEFREKFRMPKSAFYKLPRWKQNKLKMSLD 534
IYP L + A P+ G+D K E+YL++E+F M + + LP WKQ LK +
Sbjct: 2156 IYP---LADLLARPLPEGVDPLKLEIYLTDEDFEFALDMTRDEYNALPAWKQVNLKKAKG 2212
Query: 535 LF 540
LF
Sbjct: 2213 LF 2214
WARNING: HSPs involving 38 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.99
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.380 0.172 0.738
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.344 0.151 0.486
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.321 0.134 0.405
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.347 0.151 0.552
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.340 0.152 0.483
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.359 0.159 0.577
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 208 207 10. 77 3 12 22 0.098 35
31 0.11 38
+2 0 208 206 10. 77 3 12 22 0.097 35
31 0.11 38
+1 0 209 207 10. 77 3 12 22 0.098 35
31 0.11 38
-1 0 209 207 10. 77 3 12 22 0.098 35
31 0.11 38
-2 0 208 206 10. 77 3 12 22 0.097 35
31 0.11 38
-3 0 208 207 10. 77 3 12 22 0.098 35
31 0.11 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 88
No. of states in DFA: 598 (59 KB)
Total size of DFA: 226 KB (256 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 207.28u 0.94s 208.22t Elapsed: 00:01:22
Total cpu time: 207.34u 0.99s 208.33t Elapsed: 00:01:22
Start: Fri Jan 18 16:24:20 2002 End: Fri Jan 18 16:25:42 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000