BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= TDE1149
(320 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|42526659|ref|NP_971757.1| hypothetical protein TDE1149 [... 655 0.0
gi|115421518|emb|CAJ48027.1| phage protein [Bordetella aviu... 167 8e-40
gi|117624709|ref|YP_853622.1| hypothetical protein APECO1_4... 166 2e-39
gi|89152431|ref|YP_512264.1| hypothetical protein PhiV10p10... 166 2e-39
gi|41179378|ref|NP_958686.1| Bbp17 [Bordetella phage BPP-1]... 166 2e-39
gi|126359696|ref|ZP_01716689.1| conserved hypothetical prot... 154 6e-36
gi|30387386|ref|NP_848215.1| hypothetical protein epsilon15... 154 8e-36
gi|48697198|ref|YP_024928.1| hypothetical protein BcepC6B_g... 152 3e-35
gi|69936581|ref|ZP_00631365.1| conserved hypothetical prote... 146 2e-33
gi|54302250|ref|YP_132243.1| hypothetical protein PBPRB0570... 117 8e-25
>gi|42526659|ref|NP_971757.1| hypothetical protein TDE1149 [Treponema denticola ATCC 35405]
gi|41816852|gb|AAS11638.1| hypothetical protein TDE_1149 [Treponema denticola ATCC 35405]
Length = 320
Score = 655 bits (1691), Expect = 0.0, Method: Composition-based stats.
Identities = 320/320 (100%), Positives = 320/320 (100%)
Query: 1 MPNLSMTDSMTALEVMRRANNQDGFHIVELMAQTNEILKDMPMIEANDGTIHNTLVRTSL 60
MPNLSMTDSMTALEVMRRANNQDGFHIVELMAQTNEILKDMPMIEANDGTIHNTLVRTSL
Sbjct: 1 MPNLSMTDSMTALEVMRRANNQDGFHIVELMAQTNEILKDMPMIEANDGTIHNTLVRTSL 60
Query: 61 RSGTHRKYNEGIAPGATTTDTIRDRITMLEDYSIVDKDLADHSGNVKALRASEADAFLQG 120
RSGTHRKYNEGIAPGATTTDTIRDRITMLEDYSIVDKDLADHSGNVKALRASEADAFLQG
Sbjct: 61 RSGTHRKYNEGIAPGATTTDTIRDRITMLEDYSIVDKDLADHSGNVKALRASEADAFLQG 120
Query: 121 MGQTQAEELIYGDHGRNEAEINGLAVRLNKLTNKNVINAGGSGNKCTSIYVCAIGNRFAH 180
MGQTQAEELIYGDHGRNEAEINGLAVRLNKLTNKNVINAGGSGNKCTSIYVCAIGNRFAH
Sbjct: 121 MGQTQAEELIYGDHGRNEAEINGLAVRLNKLTNKNVINAGGSGNKCTSIYVCAIGNRFAH 180
Query: 181 LIYPRGRKDCGIKTEDMGLQNWPMEQGKVMPAYVQFFSTHYGLSIAHPDAVKRICNIDNT 240
LIYPRGRKDCGIKTEDMGLQNWPMEQGKVMPAYVQFFSTHYGLSIAHPDAVKRICNIDNT
Sbjct: 181 LIYPRGRKDCGIKTEDMGLQNWPMEQGKVMPAYVQFFSTHYGLSIAHPDAVKRICNIDNT 240
Query: 241 VPGDKIVEMILEAMLRLPQGAQGVSIYCNQDILVKIDKAAWSKGNAVFTKEDPWGDMITH 300
VPGDKIVEMILEAMLRLPQGAQGVSIYCNQDILVKIDKAAWSKGNAVFTKEDPWGDMITH
Sbjct: 241 VPGDKIVEMILEAMLRLPQGAQGVSIYCNQDILVKIDKAAWSKGNAVFTKEDPWGDMITH 300
Query: 301 IRSGRCRRVDAILSTEQALV 320
IRSGRCRRVDAILSTEQALV
Sbjct: 301 IRSGRCRRVDAILSTEQALV 320
>gi|115421518|emb|CAJ48027.1| phage protein [Bordetella avium 197N]
Length = 331
Score = 167 bits (423), Expect = 8e-40, Method: Composition-based stats.
Identities = 114/328 (34%), Positives = 172/328 (52%), Gaps = 13/328 (3%)
Query: 1 MPNLSMTDSMTALEVMRRA-NNQDGFHIVELMAQTNEILKDMPMIEANDGTIHNTLVRTS 59
MP LS T+ A R A + + IVE++ +TNEIL+DM +IEAN T H T +R+
Sbjct: 1 MPTLSNTNPTLADVAARMAPDGKIDPQIVEMLNETNEILEDMTVIEANGFTEHKTTIRSG 60
Query: 60 LRSGTHRKYNEGIAPGATTTDTIRDRITMLEDYSIVDKDLADHSGNVKALRASEADAFLQ 119
L +GT RK N G+ P + T ++D + MLE Y+ VDK LAD +GN A R SE AF++
Sbjct: 61 LPTGTWRKLNYGVQPEKSRTVQVKDSMGMLETYAEVDKALADLNGNSAAWRLSEDRAFIE 120
Query: 120 GMGQTQAEELIYGDHGRNEAEINGLAVRLNKLT---NKNVINAGGSGNKCTSIYVCAIGN 176
GM QTQA L YGD + + GL R N L+ +N+I+AGG+G+ SI++ G
Sbjct: 121 GMNQTQASTLFYGDSSIDAEKFMGLTPRFNSLSAENGQNIIDAGGTGSDNASIWLTVWGP 180
Query: 177 RFAHLIYPRGRKDCGIKTEDMGLQNWPMEQGKVMPAYVQFFSTHYGLSIAHPDAVKRICN 236
H IYP+G + G+++ D+G G Y + GL++ V RI N
Sbjct: 181 NTLHTIYPKGSQ-AGLQSRDLGEDTLVDADGGRYQGYRTHYKWDIGLTLRDWRYVVRIAN 239
Query: 237 ID------NTVPGDKIVEMILEAMLRLPQGAQG-VSIYCNQDILVKIDKAAWSK-GNAVF 288
+D N G +++++++A+ +P G + Y + I + + +K +
Sbjct: 240 VDVSELTKNASAGADLIDLMIQAVELIPNVGMGRPAFYMPRRIRSFLRRQITNKVAASTL 299
Query: 289 TKEDPWGDMITHIRSGRCRRVDAILSTE 316
T E+ G + CRR DA+L TE
Sbjct: 300 TMEEIAGKKVVAFDGIPCRRTDALLLTE 327
>gi|117624709|ref|YP_853622.1| hypothetical protein APECO1_4044 [Escherichia coli APEC O1]
gi|115513833|gb|ABJ01908.1| conserved hypothetical protein [Escherichia coli APEC O1]
Length = 330
Score = 166 bits (421), Expect = 2e-39, Method: Composition-based stats.
Identities = 106/303 (34%), Positives = 157/303 (51%), Gaps = 10/303 (3%)
Query: 27 IVELMAQTNEILKDMPMIEANDGTIHNTLVRTSLRSGTHRKYNEGIAPGATTTDTIRDRI 86
I+EL++QTN IL+DMP +E N T H T +R+ L S T R N G+ P +TT + D I
Sbjct: 29 IIELLSQTNPILQDMPFVEGNLPTGHRTTIRSGLPSATWRLLNYGVQPSKSTTVQVTDSI 88
Query: 87 TMLEDYSIVDKDLADHSGNVKALRASEADAFLQGMGQTQAEELIYGDHGRNEAEINGLAV 146
MLE Y+ VDK LAD +GN R SE AF++ M Q A+ L YGD N + GL+
Sbjct: 89 GMLETYAEVDKSLADLNGNTAEFRLSEDRAFIEAMNQQMAQTLFYGDSSVNPQQFMGLSS 148
Query: 147 RLNKLT---NKNVINAGGSGNKCTSIYVCAIGNRFAHLIYPRGRKDCGIKTEDMGLQNWP 203
R + L+ +N+I+AGG+G TSI++ G H I+P+G+K GI+ ED G
Sbjct: 149 RYSSLSAGNAQNIIDAGGTGTDNTSIWLVVWGENTVHGIFPKGQK-AGIQMEDKGQVTLE 207
Query: 204 MEQGKVMPAYVQFFSTHYGLSIAHPDAVKRICNID-----NTVPGDKIVEMILEAMLRLP 258
G Y + GL++ V RI NID I +++++A+ R+P
Sbjct: 208 DADGGKYEGYRTHYKWDNGLALRDWRYVVRIANIDVSNLSEPSSAANIAKLMVKALHRIP 267
Query: 259 QGAQGVSI-YCNQDILVKIDKAAWSKGNAVFTKEDPWGDMITHIRSGRCRRVDAILSTEQ 317
G + Y N+ + +D + K + + ++ G+ T R R DA+L TE
Sbjct: 268 NRGMGRPVFYMNRTVGQALDLQSLEKTSLAISVKETEGEWWTSFRGVPIRETDALLETEA 327
Query: 318 ALV 320
+V
Sbjct: 328 RVV 330
>gi|89152431|ref|YP_512264.1| hypothetical protein PhiV10p10 [Phage phiV10]
gi|74055454|gb|AAZ95903.1| hypothetical protein PhiV10p10 [Phage phiV10]
Length = 328
Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 105/303 (34%), Positives = 156/303 (51%), Gaps = 10/303 (3%)
Query: 27 IVELMAQTNEILKDMPMIEANDGTIHNTLVRTSLRSGTHRKYNEGIAPGATTTDTIRDRI 86
I+EL+ QTN IL+DMP +E N T H T +R+ L S T R N G+ P +TT + D +
Sbjct: 27 IIELLGQTNPILQDMPFVEGNLPTGHRTTIRSGLPSATWRLLNYGVQPSKSTTVQVTDSV 86
Query: 87 TMLEDYSIVDKDLADHSGNVKALRASEADAFLQGMGQTQAEELIYGDHGRNEAEINGLAV 146
MLE Y+ VDK LAD +GN R SE AF++ M Q A+ L YGD N + GL+
Sbjct: 87 GMLETYAEVDKSLADLNGNTAEFRLSEDRAFIEAMNQQMAQTLFYGDSSVNPQQFMGLSS 146
Query: 147 RLNKLT---NKNVINAGGSGNKCTSIYVCAIGNRFAHLIYPRGRKDCGIKTEDMGLQNWP 203
R + L+ +N+I+AGG+G TSI++ G H I+P+G+K GI+ ED G
Sbjct: 147 RYSSLSAGNAQNIIDAGGTGTDNTSIWLVVWGENTVHGIFPKGKK-AGIQMEDKGQVTLE 205
Query: 204 MEQGKVMPAYVQFFSTHYGLSIAHPDAVKRICNID-----NTVPGDKIVEMILEAMLRLP 258
G Y + GL++ V RI NID I +++++A+ R+P
Sbjct: 206 DANGGKYEGYRTHYKWDNGLALRDWRYVVRIANIDVSNLSEPSSAANIAKLMVKALHRIP 265
Query: 259 QGAQGVSI-YCNQDILVKIDKAAWSKGNAVFTKEDPWGDMITHIRSGRCRRVDAILSTEQ 317
G + Y N+ + +D + K + + ++ G+ T R R DA+L TE
Sbjct: 266 NRGMGRPVFYMNRTVGQALDLQSLEKTSLAISVKETEGEWWTSFRGVPIRETDALLETEA 325
Query: 318 ALV 320
+V
Sbjct: 326 RVV 328
>gi|41179378|ref|NP_958686.1| Bbp17 [Bordetella phage BPP-1]
gi|45569510|ref|NP_996579.1| hypothetical protein predicted by GeneMark [Bordetella phage BMP-1]
gi|45580761|ref|NP_996627.1| hypothetical protein predicted by GeneMark [Bordetella phage BIP-1]
gi|40950117|gb|AAR97683.1| Bbp17 [Bordetella phage BPP-1]
Length = 331
Score = 166 bits (419), Expect = 2e-39, Method: Composition-based stats.
Identities = 115/332 (34%), Positives = 171/332 (51%), Gaps = 13/332 (3%)
Query: 1 MPNLSMTDSMTALEVMRRA-NNQDGFHIVELMAQTNEILKDMPMIEANDGTIHNTLVRTS 59
MP LS T+ A R + + IVE++ +TNEIL DM +IEAN T H T VR+
Sbjct: 1 MPTLSTTNPTLADVAARMTPDGKIDPQIVEMLNETNEILDDMTVIEANGFTEHKTTVRSG 60
Query: 60 LRSGTHRKYNEGIAPGATTTDTIRDRITMLEDYSIVDKDLADHSGNVKALRASEADAFLQ 119
L +GT RK N G+ P + T ++D + MLE Y+ VDK LAD +GN A R SE AF++
Sbjct: 61 LPTGTWRKLNYGVQPEKSRTVQVKDSMGMLETYAEVDKALADLNGNSAAWRLSEDRAFIE 120
Query: 120 GMGQTQAEELIYGDHGRNEAEINGLAVRLNKLT---NKNVINAGGSGNKCTSIYVCAIGN 176
GM QTQA L YGD + + GL R N L+ +N+I+AGG+G+ SI++ G
Sbjct: 121 GMNQTQATTLFYGDSSIDAEKFMGLTPRFNSLSAENGQNIIDAGGTGSDNASIWLTVWGP 180
Query: 177 RFAHLIYPRGRKDCGIKTEDMGLQNWPMEQGKVMPAYVQFFSTHYGLSIAHPDAVKRICN 236
H IYP+G + G+++ D+G G Y + GL++ V RI N
Sbjct: 181 NTLHTIYPKGSQ-AGLQSRDLGEDTLIDAAGGRYQGYRTHYKWDIGLTLRDWRYVVRIAN 239
Query: 237 ID------NTVPGDKIVEMILEAMLRLPQGAQG-VSIYCNQDILVKIDKAAWSK-GNAVF 288
+D N G +++++ +A+ +P G + Y + I + + +K +
Sbjct: 240 VDVSELTKNASAGADLIDLMTQAVELIPNVGMGRPAFYMPRKIRSFLRRQITNKVAASTL 299
Query: 289 TKEDPWGDMITHIRSGRCRRVDAILSTEQALV 320
T E+ G + CRR DA+L TE +V
Sbjct: 300 TMEEIAGKKVVAFDGIPCRRTDALLLTEARVV 331
>gi|126359696|ref|ZP_01716689.1| conserved hypothetical protein [Pseudomonas putida GB-1]
gi|126315654|gb|EAZ66724.1| conserved hypothetical protein [Pseudomonas putida GB-1]
Length = 332
Score = 154 bits (390), Expect = 6e-36, Method: Composition-based stats.
Identities = 106/309 (34%), Positives = 165/309 (53%), Gaps = 18/309 (5%)
Query: 27 IVELMAQTNEILKDMPMIEANDGTIHNTLVRTSLRSGTHRKYNEGIAPGATTTDTIRDRI 86
I+E+++QTNEIL DM E N T H T +RT L +GT R N GI +TT + +
Sbjct: 27 IIEMLSQTNEILTDMLWQEGNLATGHRTTMRTGLPTGTWRALNAGILRKKSTTVQVDETC 86
Query: 87 TMLEDYSIVDKDLADHSGNVKALRASEADAFLQGMGQTQAEELIYGDHGRNEAEINGLAV 146
+LE+ IVD++LA +GN A R SE AF++GM Q A Y + ++ G+A
Sbjct: 87 ALLENLGIVDEELAGLNGNTSAFRLSENAAFIEGMNQDMATAAFYSNSALEPSKFLGMAP 146
Query: 147 RLNKLTNK---NVINAGGSGNKCTSIYVCAIGNRFAHLIYPRGRKDCGIKTEDMGLQNWP 203
R + T K N+I GG+G+ TSI++ G++ H IYP+G K G+ +DMG++
Sbjct: 147 RYSDSTAKNGQNIIKMGGAGSDNTSIWLIVWGDQTVHGIYPKGSK-AGLDHQDMGVE--L 203
Query: 204 MEQGKVMPAYVQFFSTHY----GLSIAHPDAVKRICNI-------DNTVPGDKIVEMILE 252
++ G A + F HY G+++ RICNI D + KI+E ++
Sbjct: 204 VDDGSGTGAQFRAFRDHYRWKCGIALRDWRYAVRICNIDVSDLLADTSGASVKIIEAMIR 263
Query: 253 AMLRLPQGAQG-VSIYCNQDILVKIDKAAWSKGNAVFTKEDPWGDMITHIRSGRCRRVDA 311
A+ R+P G + Y N+ + +D A +K N + ++ G+ IT +R R VDA
Sbjct: 264 AVHRIPNLRMGRAAFYMNRTVRECLDIQAMNKANVQLSIKEYDGEFITSLRGVPFRTVDA 323
Query: 312 ILSTEQALV 320
+L++E +V
Sbjct: 324 LLNSEAPVV 332
>gi|30387386|ref|NP_848215.1| hypothetical protein epsilon15p07 [Enterobacteria phage epsilon15]
gi|30266041|gb|AAO06070.1| 7 [Enterobacteria phage epsilon15]
Length = 335
Score = 154 bits (388), Expect = 8e-36, Method: Composition-based stats.
Identities = 112/310 (36%), Positives = 149/310 (48%), Gaps = 20/310 (6%)
Query: 27 IVELMAQTNEILKDMPMIEANDGTIHNTLVRTSLRSGTHRKYNEGIAPGATTTDTIRDRI 86
IVE +A+TN+IL D + NDG+ H T +R + R+YN+G+ P T T + D
Sbjct: 27 IVEQLAKTNDILTDAIYVPCNDGSKHKTTIRAGIPEPVWRRYNQGVQPTKTQTVPVTDTT 86
Query: 87 TMLEDYSIVDKDLADHSGNVKALRASEADAFLQGMGQTQAEELIYGDHGRNEAEINGLAV 146
ML D VDK LAD S N A R SE LQG A IYG+ GLA
Sbjct: 87 GMLYDLGFVDKALADRSNNAAAFRVSENMGKLQGFNNKVARYSIYGNTDAEPEAFMGLAP 146
Query: 147 RLNKLTN------KNVINAGGSGNKCTSIYVCAIGNRFAHLIYPRGRKDCGIKTEDMGLQ 200
R N L+ +NV +AGGSG+ TSI+ + G AH+IYP G G + ED+G
Sbjct: 147 RFNTLSTSKAASAENVFSAGGSGSTNTSIWFMSWGENTAHMIYPEGMV-AGFQHEDLGDD 205
Query: 201 NWPMEQGKVMPAYVQFFSTHYGLSIAHPDAVKRICNIDNTV------PGDKIVEMILEA- 253
G AY F GLS+ ++ RICNID T G ++ M+++A
Sbjct: 206 LVSDGNGGQFRAYRDEFKWDIGLSVRDWRSISRICNIDVTTLTKDASTGADLISMMVDAY 265
Query: 254 ----MLRLPQGAQGVSIYCNQDILVKIDKAAWSKGNAVFTKEDPWGDMITHIRSGRCRRV 309
+ L G + IY N+ I + K A + N T E+ G I RRV
Sbjct: 266 YARDVAMLGDGKE--VIYANKTIHAWLHKQAMNAKNVNLTIEEYGGKKIVSFLGIPIRRV 323
Query: 310 DAILSTEQAL 319
DAIL+TE A+
Sbjct: 324 DAILNTESAV 333
>gi|48697198|ref|YP_024928.1| hypothetical protein BcepC6B_gp08 [Burkholderia phage BcepC6B]
gi|47779004|gb|AAT38367.1| gp08 [Burkholderia cepacia complex phage BcepC6B]
Length = 330
Score = 152 bits (383), Expect = 3e-35, Method: Composition-based stats.
Identities = 118/333 (35%), Positives = 173/333 (51%), Gaps = 16/333 (4%)
Query: 1 MPNLSMTDSMTALEVMRRAN-NQDGFHIVELMAQTNEILKDMPMIEANDGTIHNTLVRTS 59
M LS T++ T +V +R + N IVE++ QTN +L+DM IE N T H T VRT
Sbjct: 1 MATLS-TNNPTMADVAKRLDPNGKVDIIVEMLNQTNPVLQDMTAIEGNLPTGHRTSVRTG 59
Query: 60 LRSGTHRKYNEGIAPGATTTDTIRDRITMLEDYSIVDKDLADHSGNVKALRASEADAFLQ 119
L + T RK G+ P ++T + D MLE Y+ VDK LAD +GN A R SE A ++
Sbjct: 60 LPTPTWRKLYGGVLPNKSSTAQVTDNCGMLEAYAEVDKALADLNGNTAAFRLSEDRAQIE 119
Query: 120 GMGQTQAEELIYGDHGRNEAEINGLAVRLNKLT--NK-NVINAGGSGNKCTSIYVCAIGN 176
GM Q A+ L YG+ G AE GL+ R N L+ NK NVI+AGG+G+ S ++ G
Sbjct: 120 GMNQEVAQTLFYGNDGIAPAEFTGLSPRYNSLSAENKDNVIDAGGTGSDNASAWLVVWGP 179
Query: 177 RFAHLIYPRGRKDCGIKTEDMG---LQNWPMEQGKVMPAYVQFFSTHYGLSIAHPDAVKR 233
H IYP+G K G+ ED G ++N G+ M Y + GL++ V R
Sbjct: 180 NTCHSIYPKGSK-AGLSVEDKGQVTIENADGNGGR-MEGYRTHYKWDIGLTLRDWRYVAR 237
Query: 234 ICNID-----NTVPGDKIVEMILEAMLRLPQGAQGVSI-YCNQDILVKIDKAAWSKGNAV 287
+CNID + +++ ++ A R+PQ G ++ Y N+++ K+ K
Sbjct: 238 VCNIDVSDLATSANAQALIKYMIMAAERIPQLGMGRAVWYMNRNLREKLRLGIVDKIANN 297
Query: 288 FTKEDPWGDMITHIRSGRCRRVDAILSTEQALV 320
T E G+ + +R DA+L+TE +V
Sbjct: 298 LTWETVSGERVMTFDGIPVQRTDALLNTESRVV 330
>gi|69936581|ref|ZP_00631365.1| conserved hypothetical protein [Paracoccus denitrificans PD1222]
gi|119386469|ref|YP_917524.1| hypothetical protein Pden_3762 [Paracoccus denitrificans PD1222]
gi|119377064|gb|ABL71828.1| conserved hypothetical protein [Paracoccus denitrificans PD1222]
Length = 343
Score = 146 bits (368), Expect = 2e-33, Method: Composition-based stats.
Identities = 102/317 (32%), Positives = 155/317 (48%), Gaps = 23/317 (7%)
Query: 26 HIVELMAQTNEILKDMPMIEANDGTIHNTLVRTSLRSGTHRKYNEGIAPGATTTDTIRDR 85
+I+EL ++N ILKD E NDGT H ++RT + R+YN G+ G TTT + D
Sbjct: 26 NIIELAEKSNPILKDAVFTECNDGTKHQHVIRTGIPEPAWRRYNAGVKQGKTTTAKVVDT 85
Query: 86 ITMLEDYSIVDKDLADHSGNVKALRASEADAFLQGMGQTQAEELIYGDHGRNEAEINGLA 145
M E++S+VD+ LA +GN A RASE ++G Q A +IYG GL
Sbjct: 86 TGMAEEFSVVDEALAKLNGNEAAFRASEMSGLIEGFNQFMARNMIYGSTAVTPDGFMGLD 145
Query: 146 VRLNK---LTNKNVINAGGSGNKCTSIYVCAIGNRFAHLIYPRGRKDCGIKTEDMGLQNW 202
VR + + + +INAGG+G+ TSI+ G R L+YP+G G+ +DMG Q W
Sbjct: 146 VRYDDPAVASGRQLINAGGTGSDNTSIWFVTWGPRATTLLYPKGSA-AGLSHKDMGAQLW 204
Query: 203 PMEQGK-VMPAYVQFFSTHYGLSIAHPDAVKRICNID------NTVPGDKIVEMILEAML 255
+ G A V GLS+ RICNID + G +++++++A
Sbjct: 205 DAQDGSGKFRALVDHLKWDMGLSVGDWRGNARICNIDVSALTKDAATGADLLDLMIDAEE 264
Query: 256 RLPQGAQ-GVS-----------IYCNQDILVKIDKAAWSKGNAVFTKEDPWGDMITHIRS 303
+ ++ G+ IY + + + K A +K N E+ G+ +T
Sbjct: 265 MIDTASRVGIDSKGNLVEGKTVIYVGRTVAKFLRKQALNKKNVQLRVEEVAGERVTMWGD 324
Query: 304 GRCRRVDAILSTEQALV 320
RR+DAI + E A+V
Sbjct: 325 MPVRRLDAISNAEAAIV 341
>gi|54302250|ref|YP_132243.1| hypothetical protein PBPRB0570 [Photobacterium profundum SS9]
gi|46915671|emb|CAG22443.1| hypothetical protein [Photobacterium profundum SS9]
Length = 329
Score = 117 bits (294), Expect = 8e-25, Method: Composition-based stats.
Identities = 92/319 (28%), Positives = 146/319 (45%), Gaps = 10/319 (3%)
Query: 11 TALEVMRRANNQDGFHIV-ELMAQTNEILKDMPMIEANDGTIHNTLVRTSLRSGTHRKYN 69
T ++VM R + +V +L+++TNEIL+D+P+ EAN T H +V T L + R++N
Sbjct: 10 TIVDVMNRTDESGAMAMVADLLSETNEILEDIPVFEANQATSHKEVVVTKLPNSELRRFN 69
Query: 70 EGIAPGATTTDTIRDRITMLEDYSIVDKDLADHSGNVKALRASEADAFLQGMGQTQAEEL 129
G T + D I M E S VD ++A +GN RASE L+ M Q L
Sbjct: 70 RGTKSDNGETAQVEDGIAMYEQRSTVDVEIAKLNGNSAKWRASEDSMHLESMSQQICNNL 129
Query: 130 IYGDHGRNEAEINGLAVRLNKLT---NKNVINAGGSGNKCTSIYVCAIGNRFAHLIYPRG 186
YG+ + ++G R T K ++AGG+ K TSI V + YP+G
Sbjct: 130 FYGNENDDPDSMSGFMTRYGTKTGNIGKQFVDAGGTTGKLTSIVVVVWDQNTVNGRYPKG 189
Query: 187 RKDCGIKTEDMGLQNWPMEQGKVMPAYVQFFSTHYGLSIAHPDAVKRICNI-----DNTV 241
++ + D G G+V+ + + GLSI RI NI D
Sbjct: 190 QEKELLDMVDNGKVRVTQADGRVLDCMETVYKSKLGLSIKDYRYAVRIGNIPVASLDKEG 249
Query: 242 PGDKIVEMILEAMLRLPQGAQG-VSIYCNQDILVKIDKAAWSKGNAVFTKEDPWGDMITH 300
+ ++I A ++P +G V IY N+ I + +DK + +K + + G ++ +
Sbjct: 250 STVDLWDLINTATWKIPNLRKGKVFIYANRTIRMYLDKQSVNKSGVRLKQTEVDGKLLDN 309
Query: 301 IRSGRCRRVDAILSTEQAL 319
R R DAI E+ +
Sbjct: 310 YRGIFFRTCDAISENEEKV 328
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.318 0.134 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,148,081,690
Number of Sequences: 5470121
Number of extensions: 47463751
Number of successful extensions: 94658
Number of sequences better than 1.0e-05: 10
Number of HSP's better than 0.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 94625
Number of HSP's gapped (non-prelim): 10
length of query: 320
length of database: 1,894,087,724
effective HSP length: 133
effective length of query: 187
effective length of database: 1,166,561,631
effective search space: 218147024997
effective search space used: 218147024997
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 129 (54.3 bits)