BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query                position in query    matching repeat         position in  repeat
score  div. del. ins.  sequence             begin  end (left)    repeat   class/family   begin  end (left)  ID

   21   0.0  0.0  0.0  'E03A03_A03_01.ab1'    554  574   (24) +  AT_rich  Low_complexity     1   21    (0)      

Alignments:
21  0.00  0.00  0.00  'E03A03_A03_01.ab1'  554  574  (24)  AT_rich#Low_complexity  1  21  (279)  5

  'E03A03_A03_01.    554 AATAATAATAAATAATATAAT 574    
                           v     v v v vv   vv
  AT_rich#Low_com      1 AAAAATAAAATAAATAATATA 21

Transitions / transversions = 0.00 (0 / 8)
Gap_init rate = 0.00 (0 / 21), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>'E03A03_A03_01.ab1'
TTNNNCCGGNATTCGGCCTTACGGCCGGGNACTGACTACAAGNACACCGG
NATGGAACATGCATACGAGACTACATTGATGTAACTGATTTGGTTGATGC
TCACGTGAAGGCTCTTGAGAAGGCACAACCTGCTAAAGTAGGGATCTACA
ATGTTGGAACTGGAAAGGGTAGATCAGTGAAGGAGTTTGTGAATGCTTGC
AAAAAGGCCACAGGGGTGGACATCAAAGTAGACTACCTTCCACGTCGACC
CGGCGATTATGCCGAGGTGTATAGTGACCCTTCTAAGATCAACAGGGAAC
TGAATTGGACCGCACAATACACTGACCTTGAGAAGAGTTTGCAGGTTGCA
TGGAAATGGCAAAAAGCTCATCGTAACGGTTACGGTATTTCATCTGCAAT
CTGAGTTTCTAGCCATTCAGCCAAGCAGTTGGCCATCAACTGCTCTTTTA
CATGGTGCTCAGGATTTTTTTTTTCTTTTTCTTTTTGGNCGTCCTTAGGG
AGTTTGGTAGTTGATTCGTTATACTTACATGTGTATTCAACATACAATGA
GTCNNNNNNNNNNNNNNNNNNNNNGCCCAGCCTCTGGTTGGTATAGCT

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       598 bp
GC level:         43.90 %
bases masked:        21 bp (  3.51 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       0            0 bp     0.00 %
Low complexity:       1           21 bp     3.51 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'E03A03_A03_01.ab1'
        (598 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 4 Sequences     : less than 4 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 1406 197 |=================================================
   6310 1209 225 |========================================================
   3980  984 209 |====================================================
   2510  775 174 |===========================================
   1580  601 144 |====================================
   1000  457  48 |============
    631  409  59 |==============
    398  350  33 |========
    251  317  16 |====
    158  301  10 |==
    100  291  11 |==
   63.1  280  17 |====
   39.8  263  15 |===
   25.1  248  10 |==
   15.8  238   9 |==
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 229  <<<<<<<<<<<<<<<<<
   10.0  229   7 |=
   6.31  222   9 |==
   3.98  213   6 |=
   2.51  207  10 |==
   1.58  197   2 |:
   1.00  195  13 |===
   0.63  182  13 |===
   0.40  169   9 |==
   0.25  160   5 |=
   0.16  155   6 |=
   0.10  149   4 |=
  0.063  145   6 |=
  0.040  139   3 |:
  0.025  136   2 |:
  0.016  134   2 |:
  0.010  132   1 |:
 0.0063  131   2 |:
 0.0040  129   1 |:
 0.0025  128   2 |:
 0.0016  126   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|4587518|gb|AAD25749.1|AC007060_7(AC007060) Strong ... +3   518  9.6e-49   1
gi|7437272|pir||T10588UDPglucose 4-epimerase homolog ... +3   514  2.5e-48   1
gi|9758701|dbj|BAB09155.1|(AB017065) contains similar... +3   512  4.1e-48   1
gi|7437275|pir||T00467UDPglucose 4-epimerase homolog ... +3   506  1.8e-47   1
gi|5852089|emb|CAB55396.1|(AL117264) zwh12.1 [Oryza s... +3   491  7.3e-45   1
gi|7437231|pir||A70392UDP-glucose-4-epimerase - Aquif... +3   269  2.3e-22   1
gi|1730193|sp|P55180|GALE_BACSUUDP-GLUCOSE 4-EPIMERAS... +3   256  5.6e-21   1
gi|12323470|gb|AAG51709.1|AC066689_8(AC066689) UDP-ga... +3   253  1.2e-20   1
gi|120920|sp|P09147|GALE_ECOLIUDP-GLUCOSE 4-EPIMERASE... +3   252  1.5e-20   1
gi|2914619|pdb|1UDB|   Structure Of Udp-Galactose-4-E... +3   252  1.5e-20   1
gi|2981788|pdb|1KVR|   Udp-Galactose 4-Epimerase Comp... +3   252  1.5e-20   1
gi|2981789|pdb|1KVS|   Udp-Galactose 4-Epimerase Comp... +3   252  1.5e-20   1
gi|2981790|pdb|1KVT|   Udp-Galactose 4-Epimerase Comp... +3   252  1.5e-20   1
gi|2981791|pdb|1KVU|   Udp-Galactose 4-Epimerase Comp... +3   252  1.5e-20   1
gi|3318833|pdb|1KVQ|   Udp-Galactose 4-Epimerase Comp... +3   252  1.5e-20   1
gi|3891755|pdb|1A9Y|   Udp-Galactose 4-Epimerase Muta... +3   252  1.5e-20   1
gi|3891756|pdb|1A9Z|   Udp-Galactose 4-Epimerase Muta... +3   252  1.5e-20   1
gi|11386775|sp|O65781|GAE2_CYATEUDP-GLUCOSE 4-EPIMERA... +3   251  1.9e-20   1
gi|12513688|gb|AAG55088.1|AE005253_10(AE005253) UDP-g... +3   251  1.9e-20   1
gi|12643850|sp|Q9SN58|GAE2_ARATHPROBABLE UDP-GLUCOSE ... +3   250  2.4e-20   1
gi|7437227|pir||T04291probable UDPglucose 4-epimerase... +3   250  2.4e-20   1
gi|6707010|gb|AAF25549.1|AF109295_4(AF109295) GalE [S... +3   250  2.4e-20   1
gi|12720518|gb|AAK02370.1|(AE006063) GalE [Pasteurell... +3   250  2.4e-20   1
gi|2494664|sp|Q56093|GALE_SALTIUDP-GLUCOSE 4-EPIMERAS... +3   248  3.9e-20   1
gi|43589|emb|CAA40568.1|(X57315) UDP-galactose-4-epim... +3   246  6.4e-20   1
gi|1169828|sp|P24325|GALE_HAEINUDP-GLUCOSE 4-EPIMERAS... +3   245  8.1e-20   1
gi|7437232|pir||A69184UDP-glucose 4-epimerase - Metha... +3   244  1.0e-19   1
gi|11270145|pir||F81317UDPglucose 4-epimerase (EC 5.1... +3   244  1.0e-19   1
gi|11386762|sp|Q43070|GAE1_PEAUDP-GLUCOSE 4-EPIMERASE... +3   243  1.3e-19   1
gi|5739469|gb|AAD50491.1|AF172324_9(AF172324) UDP-Glc... +3   243  1.3e-19   1
gi|1765995|gb|AAB39936.1|(U76617) UDP-glucose- 4-epim... +3   242  1.7e-19   1
gi|11386836|sp|Q9KDV3|GALE_BACHDUDP-GLUCOSE 4-EPIMERA... +3   242  1.7e-19   1
gi|6633809|gb|AAF19668.1|AC009519_2(AC009519) F1N19.2... +3   244  3.6e-19   1
gi|3413445|emb|CAA72350.1|(Y11648) galE [Campylobacte... +3   238  4.5e-19   1
gi|9714079|emb|CAC01389.1|(AJ131360) UDP-glucose 4-ep... +3   238  4.5e-19   1
gi|1149648|emb|CAA60225.1|(X86505) galE [Clostridium ... +3   237  5.7e-19   1
gi|2708270|gb|AAC46054.1|(U78089) UDP-glucose epimera... +3   237  5.7e-19   1
gi|11386774|sp|O65780|GAE1_CYATEUDP-GLUCOSE 4-EPIMERA... +3   237  5.7e-19   1
gi|11386854|sp|Q9T0A7|GAE3_ARATHPROBABLE UDP-GLUCOSE ... +3   237  5.7e-19   1
gi|2494663|sp|Q59678|GALE_PASHAUDP-GLUCOSE 4-EPIMERAS... +3   236  7.3e-19   1
gi|7497542|pir||T19989hypothetical protein C47B2.6 - ... +3   235  9.3e-19   1
gi|11270071|pir||F82419UDP-glucose 4-epimerase VCA077... +3   235  9.3e-19   1
gi|120923|sp|P22715|GALE_SALTYUDP-GLUCOSE 4-EPIMERASE... +3   234  1.2e-18   1
gi|7474062|pir||A75303UDP-glucose 4-epimerase - Deino... +3   236  1.6e-18   1
gi|2494660|sp|Q45291|GALE_BRELAUDP-GLUCOSE 4-EPIMERAS... +3   232  1.9e-18   1
gi|604222|gb|AAA57872.1|(U09349) UDP-glucose 4-epimer... +3   231  2.5e-18   1
gi|2921560|gb|AAC04827.1|(AF039306) UDP-glucose 4'-ep... +3   231  2.5e-18   1
gi|3703056|gb|AAC63021.1|(AF082008) UDP-galactose-4-e... +3   231  2.5e-18   1
gi|4206182|gb|AAD11505.1|(U60828) UDP-galactose-4-epi... +3   231  2.5e-18   1
gi|4995692|emb|CAB44218.1|(AJ011653) UDP-galactose 4-... +3   231  2.5e-18   1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 179 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|4587518|gb|AAD25749.1|AC007060_7  (AC007060) Strong similarity to F19I3.8
            gi|3033381 putative UDP-galactose-4-epimerase from Arabidopsis
            thaliana BAC gb|AC004238 and is a member of PF|01370 the NAD
            dependent epimerase/dehydratase family.  EST gb|AA597338 comes from
            this gene
            Length = 419

Frame  3 hits (HSPs):                                      _______________
                        __________________________________________________
Database sequence:     |                 |                 |              | 419
                       0               150               300

  Plus Strand HSPs:

 Score = 518 (182.3 bits), Expect = 9.6e-49, P = 9.6e-49
 Identities = 91/115 (79%), Positives = 108/115 (93%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKVD 233
             GTC+RDYIDVTDLVDAHVKAL+KA+P KVGIYNVGTGKG SVKEFV ACKKATGV+IK+D
Sbjct:   300 GTCVRDYIDVTDLVDAHVKALQKAKPRKVGIYNVGTGKGSSVKEFVEACKKATGVEIKID 359

Query:   234 YLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGYGISSA 398
             YLPRR GDYAEVYSDPSKI +ELNWTA++T+L++SL+ AW+WQK HRNGYG++++
Sbjct:   360 YLPRRAGDYAEVYSDPSKIRKELNWTAKHTNLKESLETAWRWQKLHRNGYGLTTS 414


 >gi|7437272|pir||T10588  UDPglucose 4-epimerase homolog F9F13.110 - Arabidopsis
            thaliana >gi|5262169|emb|CAB45812.1| (AL080253) UDP-glucose
            4-epimerase-like protein [Arabidopsis thaliana]
            >gi|7268842|emb|CAB79046.1| (AL161553) UDP-glucose 4-epimerase-like
            protein [Arabidopsis thaliana]
            Length = 379

Frame  3 hits (HSPs):                                      _______________
                        __________________________________________________
Database sequence:     |                   |                   |          | 379
                       0                 150                 300

  Plus Strand HSPs:

 Score = 514 (180.9 bits), Expect = 2.5e-48, P = 2.5e-48
 Identities = 93/113 (82%), Positives = 105/113 (92%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKVD 233
             GTC+RDYIDVTDLVDAHVKALEKA+P  VGIYNVGTGKGRSVKEFV ACKKATGVDIKVD
Sbjct:   267 GTCVRDYIDVTDLVDAHVKALEKAKPRNVGIYNVGTGKGRSVKEFVEACKKATGVDIKVD 326

Query:   234 YLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGYGIS 392
             +LPRRPGDYAEVYSDP+KI R+LNW+A+YT+L++SL+VAWKWQK H +GY  S
Sbjct:   327 FLPRRPGDYAEVYSDPAKILRDLNWSARYTNLQESLEVAWKWQKTHPHGYASS 379


 >gi|9758701|dbj|BAB09155.1|  (AB017065) contains similarity to UDP-glucose
            4-epimerase~gene_id:MFC16.15 [Arabidopsis thaliana]
            Length = 436

Frame  3 hits (HSPs):                                        _____________
                        __________________________________________________
Database sequence:     |                 |                |               | 436
                       0               150              300

  Plus Strand HSPs:

 Score = 512 (180.2 bits), Expect = 4.1e-48, P = 4.1e-48
 Identities = 93/110 (84%), Positives = 104/110 (94%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKVD 233
             GTCIRDYIDVTDLVDAHVKALEKAQP KVGIYNVGTGKGRSVKEFV ACKKATGV+IKVD
Sbjct:   324 GTCIRDYIDVTDLVDAHVKALEKAQPRKVGIYNVGTGKGRSVKEFVEACKKATGVEIKVD 383

Query:   234 YLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
             +LPRRPGDYAEVYSDP+KI ++LNWTA++T+L+ SLQVAW+WQK H +GY
Sbjct:   384 FLPRRPGDYAEVYSDPTKILKDLNWTARFTNLQDSLQVAWRWQKIHPHGY 433


 >gi|7437275|pir||T00467  UDPglucose 4-epimerase homolog F19I3.8 - Arabidopsis
            thaliana >gi|3033381|gb|AAC12825.1| (AC004238) putative
            UDP-galactose-4-epimerase [Arabidopsis thaliana]
            Length = 375

Frame  3 hits (HSPs):                                     ________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 375
                       0                 150                 300

  Plus Strand HSPs:

 Score = 506 (178.1 bits), Expect = 1.8e-47, P = 1.8e-47
 Identities = 92/116 (79%), Positives = 105/116 (90%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKVD 233
             GTC+RDYIDVTDLVDAHVKALEKA+P KVGI+NVGTGKG SVKEFV ACKKATGVDIKVD
Sbjct:   257 GTCVRDYIDVTDLVDAHVKALEKAKPRKVGIFNVGTGKGSSVKEFVEACKKATGVDIKVD 316

Query:   234 YLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGYGISSAI 401
             YL RR GDYAEVYSDP KI  ELNWTA++T+L++SL++AW+WQK HR+GYG SS +
Sbjct:   317 YLERRAGDYAEVYSDPRKIKEELNWTAKHTNLQESLKMAWRWQKLHRSGYGSSSLV 372


 >gi|5852089|emb|CAB55396.1|  (AL117264) zwh12.1 [Oryza sativa]
            Length = 1017

Frame  3 hits (HSPs):                   ______                            
                        __________________________________________________
Database sequence:     |       |      |       |      |      |       |     | 1017
                       0     150    300     450    600    750     900

  Plus Strand HSPs:

 Score = 491 (172.8 bits), Expect = 7.3e-45, P = 7.3e-45
 Identities = 91/109 (83%), Positives = 96/109 (88%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKVD 233
             GTCIRDYIDVTDLVDAHVKAL+KAQP KVGIYNVGTG GRSVKEFV ACK ATG  IKV 
Sbjct:   330 GTCIRDYIDVTDLVDAHVKALDKAQPGKVGIYNVGTGHGRSVKEFVEACKSATGASIKVS 389

Query:   234 YLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNG 380
             +L RRPGDYAEVYSDPSKI+ ELNWTA+YTDL +SL  AWKWQKAH NG
Sbjct:   390 FLTRRPGDYAEVYSDPSKIHDELNWTARYTDLRESLSTAWKWQKAHPNG 438


 >gi|7437231|pir||A70392  UDP-glucose-4-epimerase - Aquifex aeolicus
            >gi|2983546|gb|AAC07120.1| (AE000721) UDP-glucose-4-epimerase
            [Aquifex aeolicus]
            Length = 327

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                      |    | 327
                       0                    150                    300

  Plus Strand HSPs:

 Score = 269 (94.7 bits), Expect = 2.3e-22, P = 2.3e-22
 Identities = 56/105 (53%), Positives = 66/105 (62%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKA-QPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GTCIRDYI VTDL +AH+ ALE      K  + N G G G SV E VNA KK TGVD KV
Sbjct:   218 GTCIRDYIHVTDLAEAHILALEYLFSGGKSEVLNCGYGHGYSVLEVVNAVKKVTGVDFKV 277

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQK 365
                PRR GD   + +D  KI R LNW  +Y DLE  ++ AW+W+K
Sbjct:   278 VEAPRREGDPPALVADNKKIKRVLNWEPKYDDLEFIIKTAWEWEK 322


 >gi|1730193|sp|P55180|GALE_BACSU  UDP-GLUCOSE 4-EPIMERASE (GALACTOWALDENASE)
            (UDP-GALACTOSE 4-EPIMERASE) >gi|7437225|pir||D69628 UDPglucose
            4-epimerase (EC 5.1.3.2) - Bacillus subtilis
            >gi|1429254|emb|CAA67713.1| (X99339) UDP-glucose 4-epimerase
            [Bacillus subtilis] >gi|1783241|dbj|BAA11718.1| (D83026) highly
            homologous to UDP-glucose 4-epimerases (SwissProt:GALE_HAEIN and
            GALE_ECOLI); hypothetical [Bacillus subtilis]
            >gi|2636421|emb|CAB15912.1| (Z99123) UDP-glucose 4-epimerase
            [Bacillus subtilis]
            Length = 339

Frame  3 hits (HSPs):                                   __________________
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                     |                      |     | 339
                       0                   150                    300
__________________

Annotated Domains:
   DOMO                 DM00174: UDPGLUCOSE4-EPIMERASE           1..329
   Entrez               np-binding site: NAD (POTENTIAL).        2..33
   PFAM                 Epimerase: NAD dependent epimerase/dehyd 3..332
   PRODOM               PD000038: ADH(34) GALE(22) FABG(14)      3..330
__________________


  Plus Strand HSPs:

 Score = 256 (90.1 bits), Expect = 5.6e-21, P = 5.6e-21
 Identities = 51/112 (45%), Positives = 69/112 (61%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKA-QPAKVGIYNVGTGKGRSVKEFVNACKKATGVDI 224
             + GT +RDYI V DL + HVKALEK         YN+GTG G SV E V A +K +G ++
Sbjct:   224 KDGTGVRDYIHVVDLAEGHVKALEKVLNSTGADAYNLGTGTGYSVLEMVKAFEKVSGKEV 283

Query:   225 KVDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
                +  RRPGD A  ++DP+K  REL W A+   LE+    +W+WQ ++ NGY
Sbjct:   284 PYRFADRRPGDIATCFADPAKAKRELGWEAK-RGLEEMCADSWRWQSSNVNGY 335


 >gi|12323470|gb|AAG51709.1|AC066689_8  (AC066689) UDP-galactose 4-epimerase,
            putative; 6572-4109 [Arabidopsis thaliana]
            Length = 348

Frame  3 hits (HSPs):                                   __________________
                        __________________________________________________
Database sequence:     |                     |                    |       | 348
                       0                   150                  300

  Plus Strand HSPs:

 Score = 253 (89.1 bits), Expect = 1.2e-20, P = 1.2e-20
 Identities = 51/116 (43%), Positives = 72/116 (62%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKAQPAKVG--IYNVGTGKGRSVKEFVNACKKATGVD 221
             + GT +RDYI V DL D H+ AL+K    ++G  +YN+GTGKG +V E V+A +KA+G+ 
Sbjct:   229 KDGTGVRDYIHVVDLADGHICALQKLDDTEIGCEVYNLGTGKGTTVLEMVDAFEKASGMK 288

Query:   222 IKVDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGYGIS 392
             I +  + RRPGD   VY+   K  RELNW A +  +E+  +  W W   +  GYG S
Sbjct:   289 IPLVKVGRRPGDAETVYASTEKAERELNWKANF-GIEEMCRDQWNWASNNPFGYGSS 344


 >gi|120920|sp|P09147|GALE_ECOLI  UDP-GLUCOSE 4-EPIMERASE (GALACTOWALDENASE)
            (UDP-GALACTOSE 4-EPIMERASE) >gi|68390|pir||XUECUG UDPglucose
            4-epimerase (EC 5.1.3.2) - Escherichia coli >gi|2914620|pdb|1UDC|
            Structure Of Udp-Galactose-4-Epimerase Complexed With Udp-Mannose
            >gi|2981901|pdb|2UDP|A Chain A, Udp-Galactose 4-Epimerase Complexed
            With Udp-Phenol >gi|2981902|pdb|2UDP|B Chain B, Udp-Galactose
            4-Epimerase Complexed With Udp-Phenol >gi|41523|emb|CAA29573.1|
            (X06226) UDP-galactose-4-epimerase [Escherichia coli]
            >gi|1651344|dbj|BAA35421.1| (D90714) UDP-glucose 4-epimerase (EC
            5.1.3.2) (galactowaldenase). [Escherichia coli]
            >gi|1786974|gb|AAC73846.1| (AE000178) UDP-galactose-4-epimerase
            [Escherichia coli K12]
            Length = 338

Frame  3 hits (HSPs):                                    _________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300
__________________

Annotated Domains:
   DOMO                 DM00174: UDPGLUCOSE4-EPIMERASE           1..330
   Entrez               np-binding site: NAD (POTENTIAL).        2..33
   PFAM                 Epimerase: NAD dependent epimerase/dehyd 3..333
   PRODOM               PD000038: ADH(34) GALE(22) FABG(14)      3..328
__________________


  Plus Strand HSPs:

 Score = 252 (88.7 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 53/110 (48%), Positives = 64/110 (58%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEK-AQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL D HV A+EK A    V IYN+G G G SV + VNA  KA G  +  
Sbjct:   227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              + PRR GD    ++D SK +RELNW    T L++  Q  W WQ  H  GY
Sbjct:   287 HFAPRREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336


 >gi|2914619|pdb|1UDB|     Structure Of Udp-Galactose-4-Epimerase Complexed With
            Udp-4-Deoxy-4-Fluoro-Alpha-D-Glucose >gi|2914618|pdb|1UDA|
            Structure Of Udp-Galactose-4-Epimerase Complexed With
            Udp-4-Deoxy-4-Fluoro-Alpha-D-Galactose >gi|1942804|pdb|1NAH|
            Udp-Galactose 4-Epimerase From Escherichia Coli, Reduced
            >gi|1942240|pdb|1XEL|  Udp-Galactose 4-Epimerase From Escherichia
            Coli >gi|1942805|pdb|1NAI|  Udp-Galactose 4-Epimerase From
            Escherichia Coli, Oxidized
            Length = 338

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 252 (88.7 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 53/110 (48%), Positives = 64/110 (58%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEK-AQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL D HV A+EK A    V IYN+G G G SV + VNA  KA G  +  
Sbjct:   227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              + PRR GD    ++D SK +RELNW    T L++  Q  W WQ  H  GY
Sbjct:   287 HFAPRREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336


 >gi|2981788|pdb|1KVR|     Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
            Length = 338

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 252 (88.7 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 53/110 (48%), Positives = 64/110 (58%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEK-AQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL D HV A+EK A    V IYN+G G G SV + VNA  KA G  +  
Sbjct:   227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              + PRR GD    ++D SK +RELNW    T L++  Q  W WQ  H  GY
Sbjct:   287 HFAPRREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336


 >gi|2981789|pdb|1KVS|     Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
            Length = 338

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 252 (88.7 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 53/110 (48%), Positives = 64/110 (58%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEK-AQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL D HV A+EK A    V IYN+G G G SV + VNA  KA G  +  
Sbjct:   227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              + PRR GD    ++D SK +RELNW    T L++  Q  W WQ  H  GY
Sbjct:   287 HFAPRREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336


 >gi|2981790|pdb|1KVT|     Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
            Length = 338

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 252 (88.7 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 53/110 (48%), Positives = 64/110 (58%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEK-AQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL D HV A+EK A    V IYN+G G G SV + VNA  KA G  +  
Sbjct:   227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              + PRR GD    ++D SK +RELNW    T L++  Q  W WQ  H  GY
Sbjct:   287 HFAPRREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336


 >gi|2981791|pdb|1KVU|     Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
            Length = 338

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 252 (88.7 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 53/110 (48%), Positives = 64/110 (58%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEK-AQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL D HV A+EK A    V IYN+G G G SV + VNA  KA G  +  
Sbjct:   227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              + PRR GD    ++D SK +RELNW    T L++  Q  W WQ  H  GY
Sbjct:   287 HFAPRREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336


 >gi|3318833|pdb|1KVQ|     Udp-Galactose 4-Epimerase Complexed With Udp-Phenol
            Length = 338

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 252 (88.7 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 53/110 (48%), Positives = 64/110 (58%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEK-AQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL D HV A+EK A    V IYN+G G G SV + VNA  KA G  +  
Sbjct:   227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              + PRR GD    ++D SK +RELNW    T L++  Q  W WQ  H  GY
Sbjct:   287 HFAPRREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336


 >gi|3891755|pdb|1A9Y|     Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
            WITH Udp-Glucose
            Length = 338

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 252 (88.7 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 53/110 (48%), Positives = 64/110 (58%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEK-AQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL D HV A+EK A    V IYN+G G G SV + VNA  KA G  +  
Sbjct:   227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              + PRR GD    ++D SK +RELNW    T L++  Q  W WQ  H  GY
Sbjct:   287 HFAPRREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336


 >gi|3891756|pdb|1A9Z|     Udp-Galactose 4-Epimerase Mutant S124aY149F COMPLEXED
            WITH Udp-Galactose
            Length = 338

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 252 (88.7 bits), Expect = 1.5e-20, P = 1.5e-20
 Identities = 53/110 (48%), Positives = 64/110 (58%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEK-AQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL D HV A+EK A    V IYN+G G G SV + VNA  KA G  +  
Sbjct:   227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGNSVLDVVNAFSKACGKPVNY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              + PRR GD    ++D SK +RELNW    T L++  Q  W WQ  H  GY
Sbjct:   287 HFAPRREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336


 >gi|11386775|sp|O65781|GAE2_CYATE  UDP-GLUCOSE 4-EPIMERASE GEPI48
            (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE)
            >gi|7437270|pir||T10498 UDPglucose 4-epimerase (EC 5.1.3.2) (clone
            GEPI48) - guar >gi|3021357|emb|CAA06339.1| (AJ005082) UDP-galactose
            4-epimerase [Cyamopsis tetragonoloba]
            Length = 350

Frame  3 hits (HSPs):                                    ________________ 
                        __________________________________________________
Database sequence:     |                     |                    |       | 350
                       0                   150                  300

  Plus Strand HSPs:

 Score = 251 (88.4 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 51/112 (45%), Positives = 68/112 (60%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPAKVG--IYNVGTGKGRSVKEFVNACKKATGVDIK 227
             GT +RDYI V DL D H+ AL K    K+G  +YN+GTGKG SV E V A ++A+G  I 
Sbjct:   232 GTGVRDYIHVVDLADGHIAALRKLNDPKIGCEVYNLGTGKGTSVLEMVKAFEQASGKKIP 291

Query:   228 VDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGYG 386
             +    RRPGD   VY+  +K  RELNW A+Y  +++  +  W W   +  GYG
Sbjct:   292 LVMAGRRPGDAEVVYASTNKAERELNWKAKY-GIDEMCRDQWNWASKNPYGYG 343


 >gi|12513688|gb|AAG55088.1|AE005253_10  (AE005253) UDP-galactose-4-epimerase
            [Escherichia coli O157:H7]
            Length = 338

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 251 (88.4 bits), Expect = 1.9e-20, P = 1.9e-20
 Identities = 53/110 (48%), Positives = 64/110 (58%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEK-AQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL D HV A+EK A    V IYN+G G G SV + VNA  KA G  +  
Sbjct:   227 GTGVRDYIHVMDLADGHVVAMEKLANKPGVHIYNLGAGVGSSVLDVVNAFSKACGKPVNY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              + PRR GD    ++D SK +RELNW    T L++  Q  W WQ  H  GY
Sbjct:   287 HFAPRREGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQGY 336


 >gi|12643850|sp|Q9SN58|GAE2_ARATH  PROBABLE UDP-GLUCOSE 4-EPIMERASE
            (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE)
            >gi|7437224|pir||T01881 UDPglucose 4-epimerase (EC 5.1.3.2)
            F8M12.10 - Arabidopsis thaliana >gi|3513739|gb|AAC33955.1|
            (AF080118) Similar to uridine diphosphate glucose epimerase;
            F8M12.10 [Arabidopsis thaliana]
            Length = 350

Frame  3 hits (HSPs):                                   __________________
                        __________________________________________________
Database sequence:     |                     |                    |       | 350
                       0                   150                  300

  Plus Strand HSPs:

 Score = 250 (88.0 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 54/123 (43%), Positives = 73/123 (59%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKAQPAKVG--IYNVGTGKGRSVKEFVNACKKATGVD 221
             + GT +RDYI V DL D H+ AL K +  K+G  +YN+GTG G SV E V+A +KA+G  
Sbjct:   229 KDGTGVRDYIHVIDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAFEKASGKK 288

Query:   222 IKVDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGYGISSAI 401
             I +    RRPGD   VY+   +   ELNW A+Y  +E+  +  W W  A  N YG  S+ 
Sbjct:   289 IPLVIAGRRPGDAEVVYASTERAESELNWKAKY-GIEEMCRDLWNW--ASNNPYGYDSSS 345

Query:   402 *VSSH 416
               +SH
Sbjct:   346 EDNSH 350


 >gi|7437227|pir||T04291  probable UDPglucose 4-epimerase (EC 5.1.3.2) -
            Arabidopsis thaliana >gi|4539370|emb|CAB40064.1| (AL049525)
            UDP-galactose 4-epimerase-like protein [Arabidopsis thaliana]
            >gi|7267794|emb|CAB81197.1| (AL161518) UDP-galactose
            4-epimerase-like protein [Arabidopsis thaliana]
            Length = 351

Frame  3 hits (HSPs):                                   __________________
                        __________________________________________________
Database sequence:     |                     |                    |       | 351
                       0                   150                  300

  Plus Strand HSPs:

 Score = 250 (88.0 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 54/123 (43%), Positives = 73/123 (59%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKAQPAKVG--IYNVGTGKGRSVKEFVNACKKATGVD 221
             + GT +RDYI V DL D H+ AL K +  K+G  +YN+GTG G SV E V+A +KA+G  
Sbjct:   230 KDGTGVRDYIHVIDLADGHIAALRKLEDCKIGCEVYNLGTGNGTSVLEMVDAFEKASGKK 289

Query:   222 IKVDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGYGISSAI 401
             I +    RRPGD   VY+   +   ELNW A+Y  +E+  +  W W  A  N YG  S+ 
Sbjct:   290 IPLVIAGRRPGDAEVVYASTERAESELNWKAKY-GIEEMCRDLWNW--ASNNPYGYDSSS 346

Query:   402 *VSSH 416
               +SH
Sbjct:   347 EDNSH 351


 >gi|6707010|gb|AAF25549.1|AF109295_4  (AF109295) GalE [Staphylococcus carnosus]
            Length = 329

Frame  3 hits (HSPs):                                   __________________
                        __________________________________________________
Database sequence:     |                      |                      |    | 329
                       0                    150                    300

  Plus Strand HSPs:

 Score = 250 (88.0 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 44/111 (39%), Positives = 71/111 (63%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPA-KVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             G+C+RDY+ VTDL+ AH+ A +  +   + G +N+G+ +G SV E V A +KATG+DIK 
Sbjct:   217 GSCVRDYLHVTDLIAAHILAYQYLKDGGESGAFNLGSSQGYSVIEIVEAARKATGIDIKA 276

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
             +   RR GD +++ +   K  R L W  ++ D+ + ++ AW W ++H NGY
Sbjct:   277 EIGERRAGDPSKLVASSDKAQRVLGWKPKHDDIHEIIETAWNWHQSHPNGY 327


 >gi|12720518|gb|AAK02370.1|  (AE006063) GalE [Pasteurella multocida]
            Length = 338

Frame  3 hits (HSPs):                                   __________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 250 (88.0 bits), Expect = 2.4e-20, P = 2.4e-20
 Identities = 57/119 (47%), Positives = 73/119 (61%), Frame = +3

Query:    27 GX*LQXHRXGTCIRDYIDVTDLVDAHVKALEKAQ-PAKVGIYNVGTGKGRSVKEFVNACK 203
             G   + H  GT +RDYI V DL   H+KAL++ +  A + IYN+GTG G SV + V A +
Sbjct:   219 GSDYETH-DGTGVRDYIHVVDLAIGHLKALDRHEGDAGLHIYNLGTGSGYSVLDMVKAFE 277

Query:   204 KATGVDIKVDY--LPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRN 377
             K    DIK+ Y  + RRPGD A  YSDPS    ELNWTA    LE+ ++  W WQK +  
Sbjct:   278 KVN--DIKIPYKLVDRRPGDIATCYSDPSLAKTELNWTAA-RGLEQMMKDTWHWQKKNPK 334

Query:   378 GY 383
             GY
Sbjct:   335 GY 336


 >gi|2494664|sp|Q56093|GALE_SALTI  UDP-GLUCOSE 4-EPIMERASE (GALACTOWALDENASE)
            (UDP-GALACTOSE 4-EPIMERASE) >gi|1073667|pir||S51328 UDPglucose
            4-epimerase (EC 5.1.3.2) - Salmonella typhi
            >gi|634103|emb|CAA58779.1| (X83927) UDP-galactose 4-epimerase
            [Salmonella typhi]
            Length = 338

Frame  3 hits (HSPs):                                    _________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300
__________________

Annotated Domains:
   Entrez               np-binding site: NAD (POTENTIAL).        2..33
   PFAM                 Epimerase: NAD dependent epimerase/dehyd 3..333
   PRODOM               PD000038: ADH(34) GALE(22) FABG(14)      3..328
__________________


  Plus Strand HSPs:

 Score = 248 (87.3 bits), Expect = 3.9e-20, P = 3.9e-20
 Identities = 53/110 (48%), Positives = 64/110 (58%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEK-AQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL D HV A+EK A  + V IYN+G G G SV + VNA  KA G  I  
Sbjct:   227 GTGVRDYIHVMDLADGHVVAMEKLADKSGVHIYNLGAGVGSSVLDVVNAFSKACGKPINY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              + PRR GD    ++D SK +RELNW    T L++  Q  W WQ  H   Y
Sbjct:   287 HFAPRRDGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQAY 336


 >gi|43589|emb|CAA40568.1|  (X57315) UDP-galactose-4-epimerase [Haemophilus
            influenzae]
            Length = 338

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 246 (86.6 bits), Expect = 6.4e-20, P = 6.4e-20
 Identities = 52/110 (47%), Positives = 67/110 (60%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQ-PAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL   H+KAL++ +  A + IYN+GTG G SV + V A +KA  + I  
Sbjct:   227 GTGVRDYIHVVDLAVGHLKALQRHENDAGLHIYNLGTGHGYSVLDMVKAFEKANNITIPY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
               + RR GD A  YSDPS   +EL W A+   LEK +Q  W WQK +  GY
Sbjct:   287 KLVERRSGDIATCYSDPSLAAKELGWVAE-RGLEKMMQDTWNWQKNNSKGY 336


 >gi|1169828|sp|P24325|GALE_HAEIN  UDP-GLUCOSE 4-EPIMERASE (GALACTOWALDENASE)
            (UDP-GALACTOSE 4-EPIMERASE) >gi|1075413|pir||A64063 UDPglucose
            4-epimerase (EC 5.1.3.2) - Haemophilus influenzae (strain Rd KW20)
            >gi|1573321|gb|AAC22012.1| (U32719) UDP-glucose 4-epimerase (galE)
            [Haemophilus influenzae Rd]
            Length = 338

Frame  3 hits (HSPs):                                    _________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300
__________________

Annotated Domains:
   DOMO                 DM00174: UDPGLUCOSE4-EPIMERASE           1..330
   Entrez               np-binding site: NAD (POTENTIAL).        2..33
   PFAM                 Epimerase: NAD dependent epimerase/dehyd 3..333
   PRODOM               PD000038: ADH(34) GALE(22) FABG(14)      3..331
__________________


  Plus Strand HSPs:

 Score = 245 (86.2 bits), Expect = 8.1e-20, P = 8.1e-20
 Identities = 52/110 (47%), Positives = 67/110 (60%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQ-PAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL   H+KAL++ +  A + IYN+GTG G SV + V A +KA  + I  
Sbjct:   227 GTGVRDYIHVVDLAVGHLKALQRHENDAGLHIYNLGTGHGYSVLDMVKAFEKANNITIAY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
               + RR GD A  YSDPS   +EL W A+   LEK +Q  W WQK +  GY
Sbjct:   287 KLVERRSGDIATCYSDPSLAAKELGWVAE-RGLEKMMQDTWNWQKNNPKGY 336


 >gi|7437232|pir||A69184  UDP-glucose 4-epimerase - Methanobacterium
            thermoautotrophicum (strain Delta H) >gi|2621713|gb|AAB85137.1|
            (AE000844) UDP-glucose 4-epimerase [Methanothermobacter
            thermautotrophicus]
            Length = 325

Frame  3 hits (HSPs):                                   __________________
                        __________________________________________________
Database sequence:     |       |       |      |       |       |       |   | 325
                       0      50     100    150     200     250     300

  Plus Strand HSPs:

 Score = 244 (85.9 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 44/109 (40%), Positives = 61/109 (55%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKVD 233
             GTC+RDYI V DL DAH +AL   +  + G++N+G G G SV E +  C++ TG  I   
Sbjct:   215 GTCVRDYIHVMDLADAHWRALRYLEGGESGVFNLGNGNGFSVMEVIETCREVTGASINAV 274

Query:   234 YLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNG 380
                RRPGD  E+     +  R L W  ++T+LE  ++ AW W    R G
Sbjct:   275 EDDRRPGDPPELVGSAGRARRVLGWRPEFTELEDIIETAWNWHSRIRGG 323


 >gi|11270145|pir||F81317  UDPglucose 4-epimerase (EC 5.1.3.2) Cj1131c [imported]
            - Campylobacter jejuni (strain NCTC 11168)
            >gi|6968565|emb|CAB73386.1| (AL139077) UDP-glucose 4-epimerase
            [Campylobacter jejuni]
            Length = 328

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                      |    | 328
                       0                    150                    300

  Plus Strand HSPs:

 Score = 244 (85.9 bits), Expect = 1.0e-19, P = 1.0e-19
 Identities = 48/106 (45%), Positives = 67/106 (63%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIK 227
             + GTCIRD+I V D+  AH+ AL+  +  +  ++NVG G G SVKE + A KK +GVD K
Sbjct:   221 KDGTCIRDFIHVDDISSAHLAALDYLKENESNVFNVGYGHGFSVKEVIEAMKKVSGVDFK 280

Query:   228 VDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQK 365
             V+  PRR GD + + SD SKI    +W  +Y DLE   + A+ W+K
Sbjct:   281 VELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLELICKSAFDWEK 326


 >gi|11386762|sp|Q43070|GAE1_PEA  UDP-GLUCOSE 4-EPIMERASE (GALACTOWALDENASE)
            (UDP-GALACTOSE 4-EPIMERASE) >gi|7437228|pir||T06526 UDPglucose
            4-epimerase (EC 5.1.3.2) - garden pea >gi|1173555|gb|AAA86532.1|
            (U31544) UDP-galactose-4-epimerase [Pisum sativum]
            Length = 350

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                     |                    |       | 350
                       0                   150                  300

  Plus Strand HSPs:

 Score = 243 (85.5 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 52/114 (45%), Positives = 70/114 (61%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKAQPAK-VGI--YNVGTGKGRSVKEFVNACKKATGV 218
             R G+ IRDYI V DL D H+ AL K   ++ +G   YN+GTG+G SV E V A +KA+G 
Sbjct:   233 RDGSAIRDYIHVMDLADGHIAALRKLFTSENIGCTAYNLGTGRGSSVLEMVAAFEKASGK 292

Query:   219 DIKVDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              I +   PRRPGD  EVY+  +K  +EL W A+Y  +E+  +  W W K +  GY
Sbjct:   293 KIALKLCPRRPGDATEVYASTAKAEKELGWKAKY-GVEEMCRDQWNWAKNNPWGY 346


 >gi|5739469|gb|AAD50491.1|AF172324_9  (AF172324) UDP-Glc-4-epimerase GalE
            [Escherichia coli]
            Length = 337

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 337
                       0                    150                   300

  Plus Strand HSPs:

 Score = 243 (85.5 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 48/113 (42%), Positives = 68/113 (60%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIK 227
             + GT +RDYI V DL   H+ AL  A+     +YN+GTGKG SV + +N+ K+   +DI 
Sbjct:   225 KDGTGVRDYIHVQDLALGHIAALMNAKNKSYQVYNLGTGKGYSVLDIINSFKEINNIDIP 284

Query:   228 VDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGYG 386
                  RRPGD AE +S P    REL W A++ +L+  L+ +W WQ+ +  GYG
Sbjct:   285 FIIEKRRPGDIAECWSSPELAKRELGWQAKF-ELKDMLRDSWNWQQKNPFGYG 336


 >gi|1765995|gb|AAB39936.1|  (U76617) UDP-glucose- 4-epimerase [Pasteurella
            multocida]
            Length = 338

Frame  3 hits (HSPs):                                   __________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 242 (85.2 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 56/119 (47%), Positives = 72/119 (60%), Frame = +3

Query:    27 GX*LQXHRXGTCIRDYIDVTDLVDAHVKALEKAQ-PAKVGIYNVGTGKGRSVKEFVNACK 203
             G   + H  GT +RDYI V DL    +KAL++ +  A + IYN+GTG G SV + V A +
Sbjct:   219 GSDYETH-DGTGVRDYIHVVDLAIGQLKALDRHEGDAGLHIYNLGTGSGYSVLDMVKAFE 277

Query:   204 KATGVDIKVDY--LPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRN 377
             K    DIK+ Y  + RRPGD A  YSDPS    ELNWTA    LE+ ++  W WQK +  
Sbjct:   278 KVN--DIKIPYKLVDRRPGDIATCYSDPSLAKTELNWTAA-RGLEQMMKDTWHWQKKNPK 334

Query:   378 GY 383
             GY
Sbjct:   335 GY 336


 >gi|11386836|sp|Q9KDV3|GALE_BACHD  UDP-GLUCOSE 4-EPIMERASE (GALACTOWALDENASE)
            (UDP-GALACTOSE 4-EPIMERASE) >gi|10173723|dbj|BAB04827.1| (AP001510)
            UDP-glucose 4-epimerase [Bacillus halodurans]
            Length = 334

Frame  3 hits (HSPs):                                   _________________ 
                        __________________________________________________
Database sequence:     |                      |                     |     | 334
                       0                    150                   300

  Plus Strand HSPs:

 Score = 242 (85.2 bits), Expect = 1.7e-19, P = 1.7e-19
 Identities = 47/111 (42%), Positives = 63/111 (56%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQP-AKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             G+CIRDYI V DL +AH  A E  +   + G +N+G GKG SVKE +  C++ TG  I  
Sbjct:   216 GSCIRDYIHVMDLANAHYLACEHLRKDGQSGSFNLGNGKGFSVKEVIEVCRQVTGHPIPA 275

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
             +  PRR GD A + +   K    L W  +Y  LE  ++ AW W K H +GY
Sbjct:   276 EIAPRRSGDPASLIASSEKAQTILGWEPKYPSLETMVEHAWNWHKEHPHGY 326


 >gi|6633809|gb|AAF19668.1|AC009519_2  (AC009519) F1N19.2 [Arabidopsis thaliana]
            Length = 447

Frame  3 hits (HSPs):                                        _____________
                        __________________________________________________
Database sequence:     |                |                |                | 447
                       0              150              300

  Plus Strand HSPs:

 Score = 244 (85.9 bits), Expect = 3.6e-19, P = 3.6e-19
 Identities = 49/111 (44%), Positives = 69/111 (62%), Frame = +3

Query:    63 IRDYIDVTDLVDAHVKALEKAQPAKVG--IYNVGTGKGRSVKEFVNACKKATGVDIKVDY 236
             +RDYI V DL D H+ AL+K    ++G  +YN+GTGKG +V E V+A +KA+G+ I +  
Sbjct:   333 VRDYIHVVDLADGHICALQKLDDTEIGCEVYNLGTGKGTTVLEMVDAFEKASGMKIPLVK 392

Query:   237 LPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGYGIS 392
             + RRPGD   VY+   K  RELNW A +  +E+  +  W W   +  GYG S
Sbjct:   393 VGRRPGDAETVYASTEKAERELNWKANF-GIEEMCRDQWNWASNNPFGYGSS 443


 >gi|3413445|emb|CAA72350.1|  (Y11648) galE [Campylobacter jejuni]
            Length = 328

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                      |    | 328
                       0                    150                    300

  Plus Strand HSPs:

 Score = 238 (83.8 bits), Expect = 4.5e-19, P = 4.5e-19
 Identities = 47/106 (44%), Positives = 66/106 (62%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIK 227
             + GTCIRD+I V D+  AH+ AL+  +  +  ++NVG G G SVKE + A KK +GVD K
Sbjct:   221 KDGTCIRDFIHVDDISSAHLSALDYLKENESNVFNVGYGHGFSVKEVIEAMKKVSGVDFK 280

Query:   228 VDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQK 365
             V+  PRR GD + + SD SKI    +W  +Y DL    + A+ W+K
Sbjct:   281 VELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLGLICKSAFDWEK 326


 >gi|9714079|emb|CAC01389.1|  (AJ131360) UDP-glucose 4-epimease [Campylobacter
            jejuni]
            Length = 330

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                      |    | 330
                       0                    150                    300

  Plus Strand HSPs:

 Score = 238 (83.8 bits), Expect = 4.5e-19, P = 4.5e-19
 Identities = 47/106 (44%), Positives = 66/106 (62%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIK 227
             + GTCIRD+I V D+  AH+ AL+  +  +  ++NVG G G SVKE + A KK +GVD K
Sbjct:   223 KDGTCIRDFIHVDDISSAHLSALDYLKENESNVFNVGYGHGFSVKEVIEAMKKVSGVDFK 282

Query:   228 VDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQK 365
             V+  PRR GD + + SD SKI    +W  +Y DL    + A+ W+K
Sbjct:   283 VELAPRRAGDPSVLISDASKIRNLTSWQPKYDDLGLICKSAFDWEK 328


 >gi|1149648|emb|CAA60225.1|  (X86505) galE [Clostridium perfringens]
            Length = 138

Frame  3 hits (HSPs):            _________________________________________
                        __________________________________________________
Database sequence:     |                 |                 |              | 138
                       0                50               100

  Plus Strand HSPs:

 Score = 237 (83.4 bits), Expect = 5.7e-19, P = 5.7e-19
 Identities = 47/112 (41%), Positives = 64/112 (57%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKAQPA-KVGIYNVGTGKGRSVKEFVNACKKATGVDI 224
             + GTC+R+YI V++L  AH  ALE+     +  IYN+G G G +VKE V   +K TG  I
Sbjct:    27 KDGTCVRNYIHVSNLASAHSLALERLMNGGESRIYNLGNGTGFTVKEVVEVARKVTGHPI 86

Query:   225 KVDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNG 380
               +  PRR GD A + +   K   ELNW  ++  LE  ++ AW W K H NG
Sbjct:    87 PAEVAPRRAGDPAILIASSDKAIEELNWKPKFNSLETIIETAWNWHKNHPNG 138


 >gi|2708270|gb|AAC46054.1|  (U78089) UDP-glucose epimerase [Brucella abortus]
            Length = 335

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 335
                       0                    150                   300

  Plus Strand HSPs:

 Score = 237 (83.4 bits), Expect = 5.7e-19, P = 5.7e-19
 Identities = 47/110 (42%), Positives = 65/110 (59%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKVD 233
             GT +RDYI V DL   H+KAL+K    K    N+GTG+G SV + + A +  +  +IK +
Sbjct:   226 GTGVRDYIHVNDLAAGHLKALKKLDKPKCFAVNLGTGQGYSVLDVIKAFEHVSNREIKYE 285

Query:   234 YLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
               PRRPGD AE Y+DP    + L W+A+  +L +  Q  W WQ  + NGY
Sbjct:   286 IAPRRPGDVAECYADPGFAKKFLGWSAE-KNLREMCQDMWNWQSKNPNGY 334


 >gi|11386774|sp|O65780|GAE1_CYATE  UDP-GLUCOSE 4-EPIMERASE GEPI42
            (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE)
            >gi|7437271|pir||T10496 UDPglucose 4-epimerase (EC 5.1.3.2) (clone
            GEPI42) - guar >gi|3021355|emb|CAA06338.1| (AJ005081) UDP-galactose
            4-epimerase [Cyamopsis tetragonoloba]
            Length = 354

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                     |                    |       | 354
                       0                   150                  300

  Plus Strand HSPs:

 Score = 237 (83.4 bits), Expect = 5.7e-19, P = 5.7e-19
 Identities = 51/114 (44%), Positives = 66/114 (57%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKAQPA-KVGI--YNVGTGKGRSVKEFVNACKKATGV 218
             + GT IRDYI V DL D H+ AL K      +G   YN+GTG+G SV E V A +KA+G 
Sbjct:   237 KDGTAIRDYIHVMDLADGHIAALRKLFTTDNIGCTAYNLGTGRGTSVLEMVAAFEKASGK 296

Query:   219 DIKVDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              I +   PRRPGD   VY+   K  +EL W A+Y  +E+  +  WKW   +  GY
Sbjct:   297 KIPIKMCPRRPGDATAVYASTEKAEKELGWKAKY-GVEEMCRDQWKWASNNPWGY 350


 >gi|11386854|sp|Q9T0A7|GAE3_ARATH  PROBABLE UDP-GLUCOSE 4-EPIMERASE
            (GALACTOWALDENASE) (UDP-GALACTOSE 4-EPIMERASE)
            >gi|7437229|pir||T08911 UDPglucose 4-epimerase (EC 5.1.3.2)
            T32A16.90 - Arabidopsis thaliana >gi|4972096|emb|CAB43892.1|
            (AL078468) UDPglucose 4-epimerase-like protein [Arabidopsis
            thaliana] >gi|7269241|emb|CAB81310.1| (AL161560) UDPglucose
            4-epimerase-like protein [Arabidopsis thaliana]
            Length = 350

Frame  3 hits (HSPs):                                   __________________
                        __________________________________________________
Database sequence:     |                     |                    |       | 350
                       0                   150                  300

  Plus Strand HSPs:

 Score = 237 (83.4 bits), Expect = 5.7e-19, P = 5.7e-19
 Identities = 52/117 (44%), Positives = 68/117 (58%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKAQPAKVG--IYNVGTGKGRSVKEFVNACKKATGVD 221
             + GT +RDYI V DL D H+ AL K    K+   +YN+GTG G SV E V A +KA+G  
Sbjct:   229 KDGTGVRDYIHVMDLADGHIAALRKLDDLKISCEVYNLGTGNGTSVLEMVAAFEKASGKK 288

Query:   222 IKVDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGYGISSA 398
             I +    RRPGD   VY+   K  RELNW A+   +E+  +  W W  A  N YG +S+
Sbjct:   289 IPLVMAGRRPGDAEVVYASTEKAERELNWKAK-NGIEEMCRDLWNW--ASNNPYGYNSS 344


 >gi|2494663|sp|Q59678|GALE_PASHA  UDP-GLUCOSE 4-EPIMERASE (GALACTOWALDENASE)
            (UDP-GALACTOSE 4-EPIMERASE) >gi|1304491|gb|AAC44098.1| (U39043)
            uridine diphosphogalactose 4-epimerase [Mannheimia haemolytica]
            Length = 338

Frame  3 hits (HSPs):                                    _________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300
__________________

Annotated Domains:
   Entrez               np-binding site: NAD (POTENTIAL).        2..33
   PFAM                 Epimerase: NAD dependent epimerase/dehyd 3..333
   PRODOM               PD000038: ADH(34) GALE(22) FABG(14)      3..331
__________________


  Plus Strand HSPs:

 Score = 236 (83.1 bits), Expect = 7.3e-19, P = 7.3e-19
 Identities = 50/110 (45%), Positives = 65/110 (59%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQ-PAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL   H+KAL+K Q  A   +YN+GTG G SV + V A + A G+ I  
Sbjct:   227 GTGVRDYIHVVDLALGHLKALDKHQNDAGFHVYNLGTGTGYSVLDMVKAFEAANGITIPY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
               + RRPGD A  YS P K   +L W  +   LE+ ++  W WQK + NGY
Sbjct:   287 KVVDRRPGDIAVCYSAPQKALEQLGWETE-RGLEQMMKDTWNWQKNNPNGY 336


 >gi|7497542|pir||T19989  hypothetical protein C47B2.6 - Caenorhabditis elegans
            >gi|3874971|emb|CAB16861.1| (Z99709) contains similarity to Pfam
            domain: PF01370 (NAD dependent epimerase/dehydratase family),
            Score=472.0, E-value=1.5e-138, N=1~cDNA EST yk99f9.5 comes from
            this gene~cDNA EST yk99f9.3 comes from this gene~cDNA EST yk187d6.3
            comes from this gene~>
            Length = 347

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                     |                     |      | 347
                       0                   150                   300

  Plus Strand HSPs:

 Score = 235 (82.7 bits), Expect = 9.3e-19, P = 9.3e-19
 Identities = 51/112 (45%), Positives = 66/112 (58%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPA-KVG--IYNVGTGKGRSVKEFVNACKKATGVDI 224
             GT +RDYI V DL   HVKA ++ +    +G  IYN+GTG G SV++ V+A KK +G DI
Sbjct:   234 GTGVRDYIHVVDLAKGHVKAFDRIKTVGNIGTEIYNLGTGVGYSVRQMVDALKKVSGRDI 293

Query:   225 KVDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              V     RPGD A VY DPS    +L W A+ T LE+     W WQ  +  G+
Sbjct:   294 PVKIGVPRPGDVASVYCDPSLAQEKLGWRAE-TGLEEMCADLWNWQTKNPQGF 345


 >gi|11270071|pir||F82419  UDP-glucose 4-epimerase VCA0774 [imported] - Vibrio
            cholerae (group O1 strain N16961) >gi|9658197|gb|AAF96672.1|
            (AE004405) UDP-glucose 4-epimerase [Vibrio cholerae]
            Length = 338

Frame  3 hits (HSPs):                                   __________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 235 (82.7 bits), Expect = 9.3e-19, P = 9.3e-19
 Identities = 50/112 (44%), Positives = 68/112 (60%), Frame = +3

Query:    48 RXGTCIRDYIDVTDLVDAHVKALEKAQP-AKVGIYNVGTGKGRSVKEFVNACKKATGVDI 224
             + GT +RDYI V DL D H+ AL+K    A + IYN+GTGKG SV + V A + A+G  +
Sbjct:   224 KDGTGVRDYIHVMDLADGHIAALKKVGTCAGLHIYNLGTGKGYSVLDVVKAFETASGRTV 283

Query:   225 KVDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
                 + RRPGD AE ++DP+K  ++L W A   +L    Q AW WQ  +  GY
Sbjct:   284 PYKLVDRRPGDIAEYWADPTKAAQDLGWKAT-RNLHTMAQDAWCWQSNNPQGY 335


 >gi|120923|sp|P22715|GALE_SALTY  UDP-GLUCOSE 4-EPIMERASE (GALACTOWALDENASE)
            (UDP-GALACTOSE 4-EPIMERASE) >gi|96866|pir||A37760 UDPglucose
            4-epimerase (EC 5.1.3.2) - Salmonella typhimurium
            >gi|154047|gb|AAA27111.1| (M33681) uridine diphosphogalactose
            4-epimerase (galE) (EC 5.1.3.2) [Salmonella typhimurium]
            Length = 337

Frame  3 hits (HSPs):                                    _________________
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                      |                     |     | 337
                       0                    150                   300
__________________

Annotated Domains:
   Entrez               np-binding site: NAD (POTENTIAL).        2..33
   PFAM                 Epimerase: NAD dependent epimerase/dehyd 3..332
   PRODOM               PD000038: ADH(34) GALE(22) FABG(14)      3..327
__________________


  Plus Strand HSPs:

 Score = 234 (82.4 bits), Expect = 1.2e-18, P = 1.2e-18
 Identities = 52/110 (47%), Positives = 63/110 (57%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEK-AQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT +RDYI V DL D HV A+EK A  + V IYN+G G G SV + VNA  KA G  I  
Sbjct:   227 GTGVRDYIHVMDLADGHVVAMEKLADKSGVHIYNLGAGVGSSVLDVVNAFSKACGKPINY 286

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
              + PR  GD    ++D SK +RELNW    T L++  Q  W WQ  H   Y
Sbjct:   287 HFAPR-DGDLPAYWADASKADRELNWRVTRT-LDEMAQDTWHWQSRHPQAY 335


 >gi|7474062|pir||A75303  UDP-glucose 4-epimerase - Deinococcus radiodurans
            (strain R1) >gi|6460005|gb|AAF11751.1|AE002053_6 (AE002053)
            UDP-glucose 4-epimerase [Deinococcus radiodurans]
            Length = 394

Frame  3 hits (HSPs):                              _______________        
                        __________________________________________________
Database sequence:     |                  |                  |            | 394
                       0                150                300

  Plus Strand HSPs:

 Score = 236 (83.1 bits), Expect = 1.6e-18, P = 1.6e-18
 Identities = 47/113 (41%), Positives = 64/113 (56%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPAKV--GIYNVGTGKGRSVKEFVNACKKATGVDIK 227
             GTCIRDY+ V DL DAHV A+E     K     YNVG G G SV+E ++A     G  ++
Sbjct:   217 GTCIRDYVHVQDLADAHVLAVEALHAGKTDAATYNVGLGHGFSVREVLDAVDAVVGTPLQ 276

Query:   228 VDYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGYG 386
              +  PRR GD   + +D S+I  +L +  ++TDL   +Q AW W + H  G G
Sbjct:   277 RELAPRRAGDPPRLVADASRIVDQLGFAPKFTDLRDIVQTAWDWHRTHPQGLG 329


 >gi|2494660|sp|Q45291|GALE_BRELA  UDP-GLUCOSE 4-EPIMERASE (GALACTOWALDENASE)
            (UDP-GALACTOSE 4-EPIMERASE) >gi|2144276|pir||JC5168 UDPglucose
            4-epimerase (EC 5.1.3.2) - Corynebacterium glutamicum
            >gi|1161517|emb|CAA89986.1| (Z49823) UDP-galactose 4-epimease
            [Corynebacterium glutamicum]
            Length = 329

Frame  3 hits (HSPs):                                   _________________ 
Annotated Domains:      _________________________________________________ 
                        __________________________________________________
Database sequence:     |                      |                      |    | 329
                       0                    150                    300
__________________

Annotated Domains:
   Entrez               np-binding site: NAD (POTENTIAL).        2..33
   PFAM                 Epimerase: NAD dependent epimerase/dehyd 3..319
   PRODOM               PD000038: ADH(34) GALE(22) FABG(14)      3..312
__________________


  Plus Strand HSPs:

 Score = 232 (81.7 bits), Expect = 1.9e-18, P = 1.9e-18
 Identities = 45/105 (42%), Positives = 63/105 (60%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKVD 233
             GT +RDYI + DL  AHV ALE  +  K  I+N+G+G G SVK+ V  C++ TG  I  +
Sbjct:   213 GTAVRDYIHILDLAKAHVLALESNEAGKHRIFNLGSGDGYSVKQVVEMCREVTGHPIPAE 272

Query:   234 YLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKA 368
               PRR GD A + +   K  +EL WT ++TDL   ++ AW +  A
Sbjct:   273 VAPRRAGDPATLIASSEKAKQELGWTPEHTDLRTIVEDAWAFTSA 317


 >gi|604222|gb|AAA57872.1|  (U09349) UDP-glucose 4-epimerase [Azospirillum
            brasilense]
            Length = 338

Frame  3 hits (HSPs):                                   _________________ 
                        __________________________________________________
Database sequence:     |                      |                     |     | 338
                       0                    150                   300

  Plus Strand HSPs:

 Score = 231 (81.3 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 43/110 (39%), Positives = 66/110 (60%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPAKVGIYNVGTGKGRSVKEFVNACKKATGVDIKVD 233
             GTC+RDYI V DL DAH++ L   +      +N+G G G SV+E + A ++ TG+ + V 
Sbjct:   221 GTCVRDYIHVCDLADAHLRVLPALETRSR--FNLGNGTGYSVREVIAATERVTGLTVPVR 278

Query:   234 YLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
               PRR GD A + +   +I  EL W+ ++ DL+  +  AW+W++ H  GY
Sbjct:   279 VGPRRAGDPAVLIASSERIRGELGWSPRFPDLDSIIGSAWEWRRRHPGGY 328


 >gi|2921560|gb|AAC04827.1|  (AF039306) UDP-glucose 4'-epimerase [Bradyrhizobium
            japonicum]
            Length = 330

Frame  3 hits (HSPs):                                   __________________
                        __________________________________________________
Database sequence:     |                      |                      |    | 330
                       0                    150                    300

  Plus Strand HSPs:

 Score = 231 (81.3 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 48/108 (44%), Positives = 67/108 (62%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPAKVG-IYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GT IRDYI VTDL  AHV AL+  +    G  +N+GTG G SV+E +NA ++ TG ++  
Sbjct:   218 GTAIRDYIHVTDLAAAHVAALKLLEQGHAGGSFNLGTGSGFSVREILNAIRQETGREVPH 277

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKW-QKAH 371
                PRR GD   + +DPS   + LN+  +++DL   ++ AW W QKAH
Sbjct:   278 TVKPRRAGDPTYLVADPSAARKVLNFVPRHSDLPTVIRTAWAWHQKAH 325


 >gi|3703056|gb|AAC63021.1|  (AF082008) UDP-galactose-4-epimerase [Lactococcus
            lactis]
            Length = 326

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                      |    | 326
                       0                    150                    300

  Plus Strand HSPs:

 Score = 231 (81.3 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 48/110 (43%), Positives = 66/110 (60%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPA-KVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GTCIRDYID+ DL++AH+KALE  +   +   +N+G+ KG S  E +   +K TG +I  
Sbjct:   217 GTCIRDYIDMEDLIEAHIKALEYLKAGGQSDQFNLGSSKGYSNLEVLETARKVTGKEIPS 276

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
                 RR GD  E+ +D +K    L W AQ  DLE  +  AWKW ++H  GY
Sbjct:   277 QMGERRAGDPDELVADSTKAGEILGWKAQ-NDLEHIITNAWKWHQSHPKGY 326


 >gi|4206182|gb|AAD11505.1|  (U60828) UDP-galactose-4-epimerase [Lactococcus
            lactis]
            Length = 330

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                      |    | 330
                       0                    150                    300

  Plus Strand HSPs:

 Score = 231 (81.3 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 48/110 (43%), Positives = 66/110 (60%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPA-KVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GTCIRDYID+ DL++AH+KALE  +   +   +N+G+ KG S  E +   +K TG +I  
Sbjct:   221 GTCIRDYIDMEDLIEAHIKALEYLKAGGQSDQFNLGSSKGYSNLEVLETARKVTGKEIPS 280

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
                 RR GD  E+ +D +K    L W AQ  DLE  +  AWKW ++H  GY
Sbjct:   281 QMGERRAGDPDELVADSTKAGEILGWKAQ-NDLEHIITNAWKWHQSHPKGY 330


 >gi|4995692|emb|CAB44218.1|  (AJ011653) UDP-galactose 4-epimerase [Lactococcus
            lactis]
            Length = 326

Frame  3 hits (HSPs):                                    _________________
                        __________________________________________________
Database sequence:     |                      |                      |    | 326
                       0                    150                    300

  Plus Strand HSPs:

 Score = 231 (81.3 bits), Expect = 2.5e-18, P = 2.5e-18
 Identities = 47/110 (42%), Positives = 66/110 (60%), Frame = +3

Query:    54 GTCIRDYIDVTDLVDAHVKALEKAQPA-KVGIYNVGTGKGRSVKEFVNACKKATGVDIKV 230
             GTCIRDYID+ DL++AH+KALE  +   K   +N+G+ KG S  E +   +K TG +I  
Sbjct:   217 GTCIRDYIDMEDLIEAHIKALEYLKSGGKSDQFNLGSSKGYSNLEVLETARKVTGKEIPS 276

Query:   231 DYLPRRPGDYAEVYSDPSKINRELNWTAQYTDLEKSLQVAWKWQKAHRNGY 383
                 RRPGD  E+ +D +K    L W  +  DLE  +  AW+W ++H  GY
Sbjct:   277 QMGERRPGDPDELVADSTKAGEILGWKVK-NDLEHIITNAWEWHQSHPKGY 326


WARNING:  HSPs involving 179 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.97

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.328   0.140   0.459  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.369   0.168   0.666  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.352   0.155   0.554  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.341   0.145   0.482  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.344   0.147   0.532  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.352   0.157   0.539  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      198       185       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +2      0      199       186       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   +1      0      199       187       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -1      0      199       186       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -2      0      199       186       10.  76 3  12 22  0.12    34
                                                    31  0.12    37
   -3      0      198       186       10.  76 3  12 22  0.12    34
                                                    31  0.12    37


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  229
  No. of states in DFA:  598 (59 KB)
  Total size of DFA:  217 KB (256 KB)
  Time to generate neighborhood:  0.00u 0.02s 0.02t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  186.99u 0.94s 187.93t  Elapsed: 00:01:18
  Total cpu time:  187.04u 1.01s 188.05t  Elapsed: 00:01:18
  Start:  Wed Jan 16 20:09:01 2002   End:  Wed Jan 16 20:10:19 2002

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000