proteins
1 BUDs| 88 proteins |
NU | COG2165 | Type II secretory pathway, pseudopilin PulG | Help | |
|---|---|---|---|---|---|
| 9 from | query genome Vibrio cholerae (Vibrionales | Gammaproteobacteria) | ||||
| 1 BUDs | VC0408 (VC0409 VC0502 ) VC0410 VC0411 VC0828 VC2728 VC2729 VC2730 | ||||
203 letters (r) 0
0 959 = ||| 1 VC0411 (203) = -14
-50 88 = | 73 RSc2301 (130) = -19
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= VC0411
(203 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
VC0411 374 e-103
RSc2301 39 0.011
VC0502 35 0.075
PA2675 35 0.12
RSp0468 34 0.17
RSc2310 33 0.41
CC0176 33 0.48
PA0681 33 0.61
NMA0424 32 0.68
NMB2016 32 0.74
PA4556 32 0.76
RSc0723 32 0.82
PA3100 32 0.90
CAC2103 32 0.92
BS_yhaM 32 1.1
PA0678 32 1.1
CC0179 32 1.3
sll1695 31 1.4
VC2730 31 1.7
BH2827 31 2.1
YPO0813 30 2.5
VC0412 30 3.4
NMB0890 30 3.6
NMA1110 30 3.8
lin0899 30 3.9
PA3101 30 4.3
Cj1343c 30 4.6
MK1278 30 4.6
RSc3106 29 5.5
VC0409 29 6.4
RSp1292 29 7.0
RSc0726 29 7.6
VC0410 29 7.6
VC2728 29 8.7
mlr6823 29 8.7
alr4533 29 8.8
Cgl1503 28 9.9
# >VC0411
# Length = 203
#
# Score = 374 bits (959), Expect = e-103
# Identities = 203/203 (100%), Positives = 203/203 (100%)
#
# Query: 1 MRFAKSASIPKGISMPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQV 60
# MRFAKSASIPKGISMPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQV
# Sbjct: 1 MRFAKSASIPKGISMPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQV 60
#
# Query: 61 LSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNN 120
# LSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNN
# Sbjct: 61 LSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNN 120
#
# Query: 121 TEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFYVSDNGGQFSATPATERTHYK 180
# TEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFYVSDNGGQFSATPATERTHYK
# Sbjct: 121 TEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFYVSDNGGQFSATPATERTHYK 180
#
# Query: 181 RIALVIYDPQGNAYPFAAIKGNY 203
# RIALVIYDPQGNAYPFAAIKGNY
# Sbjct: 181 RIALVIYDPQGNAYPFAAIKGNY 203
#
#
# >RSc2301
# Length = 130
#
# Score = 38.5 bits (88), Expect = 0.011
# Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
#
# Query: 15 MPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLD 74
# M P +RGFTL+E+++V+ ++G+ L T PR S E+ GRA +
# Sbjct: 1 MTQAPHARRRGFTLIELVVVMAIIGLLL----TLALPRYFHSIER---------GRAQVQ 47
#
# Query: 75 E----VLGRAFDQHSGPNGGLPECVITETAGRTLCSAP 108
# + V+ A D++ G NG P+ + A R L P
# Sbjct: 48 QQNLAVIRDAIDKYYGDNGQYPDTLDDLVAKRYLRGIP 85
#
#
# >VC0502
# Length = 174
#
# Score = 35.4 bits (80), Expect = 0.075
# Identities = 35/104 (33%), Positives = 48/104 (45%), Gaps = 5/104 (4%)
#
# Query: 20 MIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQS-AEQVLSVKAAELGRAVLDEVLG 78
# M +GFTL+E+II IV+LGV V SK + A +LSV A + L +
# Sbjct: 1 MSKNQGFTLIELIIAIVILGVIAVIAAPRFINISKDAKANTMLSVAAGM--ESALTLLHS 58
#
# Query: 79 RAFDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNNTE 122
# +A + G + G E I L PS GKD+ E N +
# Sbjct: 59 QALIE--GQDIGKGEITINGVKTPLLNGYPSVNGKDSFEEINAQ 100
#
#
# >PA2675
# Length = 144
#
# Score = 35.0 bits (79), Expect = 0.12
# Identities = 17/52 (32%), Positives = 33/52 (62%)
#
# Query: 22 AKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVL 73
# A++GFTL+EMI+V+V++G+ + V L+ ++ ++ Q + L A+L
# Sbjct: 5 AQQGFTLLEMIVVLVIIGMLMGLVGPRLFNQADKAKAQTADTQVKMLKGALL 56
#
#
# >RSp0468
# Length = 144
#
# Score = 34.3 bits (77), Expect = 0.17
# Identities = 30/100 (30%), Positives = 48/100 (48%), Gaps = 18/100 (18%)
#
# Query: 13 ISMPVKPMIAKRGFTLVEMIIVIVVLGV--ALVGVTTSLYPRS-KQSAEQVLSVKAAELG 69
# +S + M RGFTL+E+++V+ ++G+ A VG PR Q + + V A+L
# Sbjct: 3 VSSKLNRMQEARGFTLLELLVVVAIIGLLAAYVG------PRYFAQLGKSEVGVAKAQL- 55
#
# Query: 70 RAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPS 109
# + +A DQ+ G P TE + L SAP+
# Sbjct: 56 -----QAFEKAVDQYRLDTGHFP---TTEQGLKALTSAPT 87
#
#
# >RSc2310
# Length = 155
#
# Score = 33.1 bits (74), Expect = 0.41
# Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
#
# Query: 25 GFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLDEVLGRAFDQH 84
# GFTL+E+++V+V++G+ L G+ Y Q + L + A++ E LG+A DQ+
# Sbjct: 26 GFTLLELLVVMVIIGL-LAGLVAPQY--FDQIGKSNLKIAKAQI------ESLGKALDQY 76
#
# Query: 85 SGPNGGLP 92
# G P
# Sbjct: 77 RLDVGAYP 84
#
#
# >CC0176
# Length = 150
#
# Score = 32.7 bits (73), Expect = 0.48
# Identities = 14/34 (41%), Positives = 24/34 (70%)
#
# Query: 23 KRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQS 56
# + GFTLVEM++VIV+LG+ V ++ P +++
# Sbjct: 15 RAGFTLVEMMVVIVILGLLATVVAINVLPNQEKA 48
#
#
# >PA0681
# Length = 149
#
# Score = 32.7 bits (73), Expect = 0.61
# Identities = 13/34 (38%), Positives = 23/34 (67%)
#
# Query: 23 KRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQS 56
# +RGFTL+E+++V+V+LG+ V + R Q+
# Sbjct: 16 QRGFTLIEIMVVVVILGILAAMVVPKVLDRPDQA 49
#
#
# >NMA0424
# Length = 149
#
# Score = 32.3 bits (72), Expect = 0.68
# Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
#
# Query: 20 MIAKRGFTLVEMIIVIVVLGV-ALVGVTTSLYPRSKQSAE--QVLSVKAAELGRA 71
# M RGFTLVE+I V+++L V AL+ +YP + E ++ +V+AA L A
# Sbjct: 1 MTDNRGFTLVELISVVLILSVLALI-----VYPSYRNYVEKAKINTVRAALLENA 50
#
#
# >NMB2016
# Length = 149
#
# Score = 32.3 bits (72), Expect = 0.74
# Identities = 22/55 (40%), Positives = 33/55 (60%), Gaps = 8/55 (14%)
#
# Query: 20 MIAKRGFTLVEMIIVIVVLGV-ALVGVTTSLYPRSKQSAE--QVLSVKAAELGRA 71
# M RGFTLVE+I V+++L V AL+ +YP + E ++ +V+AA L A
# Sbjct: 1 MTDNRGFTLVELISVVLILSVLALI-----VYPSYRNYVEKAKINAVRAALLENA 50
#
#
# >PA4556
# Length = 141
#
# Score = 32.3 bits (72), Expect = 0.76
# Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
#
# Query: 23 KRGFTLVEMIIVIVVLGVALVGVTTSLYP----RSKQSAEQVLSVKAA 66
# ++GFTL+EM++V+ V+G+ L+G+ Y RS ++ Q L AA
# Sbjct: 5 QKGFTLLEMVVVVAVIGI-LLGIAIPSYQNYVIRSNRTEGQALLSDAA 51
#
#
# >RSc0723
# Length = 161
#
# Score = 32.0 bits (71), Expect = 0.82
# Identities = 20/66 (30%), Positives = 39/66 (58%), Gaps = 9/66 (13%)
#
# Query: 19 PMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLDEVLG 78
# P+ +RGFTL+E++IV++V+ + ++T YP Q ++ +A +A L E +
# Sbjct: 8 PLPHQRGFTLIELMIVVIVVAI----LSTIAYPSYTQFVQKSRRTQA----KAALMENM- 58
#
# Query: 79 RAFDQH 84
# + F++H
# Sbjct: 59 QLFERH 64
#
#
# >PA3100
# Length = 172
#
# Score = 32.0 bits (71), Expect = 0.90
# Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 5/60 (8%)
#
# Query: 20 MIAKRGFTLVEMIIVIVVLGV--ALVGVTTSLYPRSKQ---SAEQVLSVKAAELGRAVLD 74
# M A RGFTL+E+++V+V++ V L ++T S++ AE++ + AVLD
# Sbjct: 1 MRASRGFTLIELMVVMVIISVLIGLAVLSTGFASTSRELDSEAERLAGLIGVLTDEAVLD 60
#
#
# >CAC2103
# Length = 120
#
# Score = 32.0 bits (71), Expect = 0.92
# Identities = 15/27 (55%), Positives = 20/27 (73%), Gaps = 3/27 (11%)
#
# Query: 20 MIAKRGFTLVEMII---VIVVLGVALV 43
# M+ KRGFTL+E+II +I +LG LV
# Sbjct: 1 MMKKRGFTLIELIISMSIIAILGAILV 27
#
#
# >BS_yhaM
# Length = 314
#
# Score = 31.6 bits (70), Expect = 1.1
# Identities = 15/66 (22%), Positives = 36/66 (53%), Gaps = 3/66 (4%)
#
# Query: 125 DVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQ---VFYVSDNGGQFSATPATERTHYKR 181
# ++DD++ ++PIP +++ T ++ + +IQ F V + +F PA + H++
# Sbjct: 97 NIDDFLETAPIPKNEMMDTITQYIFEMKNPNIQRITRFLVKKHEAEFMDYPAATKNHHEF 156
#
# Query: 182 IALVIY 187
# ++ + Y
# Sbjct: 157 VSGLAY 162
#
#
# >PA0678
# Length = 149
#
# Score = 31.6 bits (70), Expect = 1.1
# Identities = 11/27 (40%), Positives = 21/27 (77%)
#
# Query: 25 GFTLVEMIIVIVVLGVALVGVTTSLYP 51
# GFTL+E+++V+V++G+A ++ S P
# Sbjct: 8 GFTLIELMVVLVIVGIATAAISLSARP 34
#
#
# >CC0179
# Length = 196
#
# Score = 31.6 bits (70), Expect = 1.3
# Identities = 22/72 (30%), Positives = 38/72 (52%), Gaps = 3/72 (4%)
#
# Query: 24 RGFTLVEMIIVIVVLG-VALVGVTTSLYPRSKQSAEQVLSVKAAELG--RAVLDEVLGRA 80
# +GFTL+EM++ +++ + GV + Q+A +V + AEL RAV+ L +A
# Sbjct: 2 KGFTLIEMMVALLIFALITAAGVAVMSSTLNNQTAVRVRVERYAELQRMRAVVKADLSQA 61
#
# Query: 81 FDQHSGPNGGLP 92
# + + GLP
# Sbjct: 62 ATRRTRGEDGLP 73
#
#
# >sll1695
# Length = 170
#
# Score = 31.2 bits (69), Expect = 1.4
# Identities = 27/104 (25%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
#
# Query: 23 KRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLDEVLGRAFD 82
# +RGFTL+E+++V+++LGV +L+ + ++ E + +G+A +A
# Sbjct: 21 QRGFTLLELLVVVIILGVLGAMTLPNLFSQIGKAREAEAKQILSAIGQAQQSYFFEKASF 80
#
# Query: 83 QHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNNTEFNDV 126
# S N L I+ + S P +G D +S+ T N V
# Sbjct: 81 AES--NQALE---ISFQSNYYDISEPQLIGTDVAKSSATATNGV 119
#
#
# >VC2730
# Length = 146
#
# Score = 31.2 bits (69), Expect = 1.7
# Identities = 14/43 (32%), Positives = 28/43 (64%)
#
# Query: 17 VKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQ 59
# +K M + GFTL+E+++V+V+LG+ V +L +++ +Q
# Sbjct: 1 MKKMRKQTGFTLLEVMVVVVILGILASFVVPNLLGNKEKADQQ 43
#
#
# >BH2827
# Length = 102
#
# Score = 30.8 bits (68), Expect = 2.1
# Identities = 13/42 (30%), Positives = 27/42 (63%)
#
# Query: 18 KPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQ 59
# KP + GFTLVEM+IV++++ + L+ S+ ++ + ++
# Sbjct: 3 KPFHHQAGFTLVEMMIVLMIISILLLVALPSMTKNNEVAGDK 44
#
#
# >YPO0813
# Length = 145
#
# Score = 30.4 bits (67), Expect = 2.5
# Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 11/70 (15%)
#
# Query: 24 RGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLD-EVLGRAFD 82
# +GFTL+E+++VIV+LG+ L +T +K A+Q +AV D L A D
# Sbjct: 7 KGFTLLEIMVVIVILGL-LASLTIPSLMSNKNRADQ---------QKAVSDISALENALD 56
#
# Query: 83 QHSGPNGGLP 92
# + NG P
# Sbjct: 57 MYRLDNGDYP 66
#
#
# >VC0412
# Length = 256
#
# Score = 30.0 bits (66), Expect = 3.4
# Identities = 11/17 (64%), Positives = 16/17 (93%)
#
# Query: 24 RGFTLVEMIIVIVVLGV 40
# RGFTL+EM+I I++LG+
# Sbjct: 3 RGFTLIEMVITIILLGI 19
#
#
# >NMB0890
# Length = 162
#
# Score = 30.0 bits (66), Expect = 3.6
# Identities = 10/18 (55%), Positives = 17/18 (93%)
#
# Query: 23 KRGFTLVEMIIVIVVLGV 40
# ++GFTL+EM+IV+ +LG+
# Sbjct: 8 QKGFTLIEMMIVVAILGI 25
#
#
# >NMA1110
# Length = 162
#
# Score = 30.0 bits (66), Expect = 3.8
# Identities = 10/18 (55%), Positives = 17/18 (93%)
#
# Query: 23 KRGFTLVEMIIVIVVLGV 40
# ++GFTL+EM+IV+ +LG+
# Sbjct: 8 QKGFTLIEMMIVVAILGI 25
#
#
# >lin0899
# Length = 130
#
# Score = 30.0 bits (66), Expect = 3.9
# Identities = 24/85 (28%), Positives = 37/85 (43%), Gaps = 21/85 (24%)
#
# Query: 119 NNTEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFYVSDNGGQFSATPATERTH 178
# N EF +D+YIT +P +VL Q+ +IQ +A ATE+
# Sbjct: 3 NKLEFTTIDEYITQAPPETKEVL--------QKIRETIQA----------AAPEATEKIS 44
#
# Query: 179 YKRIALVIYDPQGNAYPFAAIKGNY 203
# Y+ + + +GN FA K +Y
# Sbjct: 45 YQ---MPTFYFEGNLVHFAVAKNHY 66
#
#
# >PA3101
# Length = 148
#
# Score = 29.6 bits (65), Expect = 4.3
# Identities = 12/32 (37%), Positives = 21/32 (65%)
#
# Query: 25 GFTLVEMIIVIVVLGVALVGVTTSLYPRSKQS 56
# GFTL+E+++V+V+LG+ V + R Q+
# Sbjct: 14 GFTLIEIMVVVVILGILAALVVPQVMSRPDQA 45
#
#
# >Cj1343c
# Length = 171
#
# Score = 29.6 bits (65), Expect = 4.6
# Identities = 14/36 (38%), Positives = 22/36 (60%), Gaps = 1/36 (2%)
#
# Query: 23 KRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAE 58
# K+ FT++E++ VIV+LG+ L + SK AE
# Sbjct: 2 KKAFTILELVFVIVILGI-LAAIALPKMSSSKDEAE 36
#
#
# >MK1278
# Length = 564
#
# Score = 29.6 bits (65), Expect = 4.6
# Identities = 25/70 (35%), Positives = 33/70 (46%), Gaps = 12/70 (17%)
#
# Query: 52 RSKQSAEQVLSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPSAL 111
# R K+S ++ +K EL A LDE+ + FD P GGLP A + L
# Sbjct: 386 RLKRSDGELRRLK--ELAAATLDELYFKLFD----PFGGLP------AARGAIRRILGEL 433
#
# Query: 112 GKDTGESNNT 121
# G+D GES T
# Sbjct: 434 GEDVGESTET 443
#
#
# >RSc3106
# Length = 156
#
# Score = 29.3 bits (64), Expect = 5.5
# Identities = 13/35 (37%), Positives = 23/35 (65%)
#
# Query: 22 AKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQS 56
# A RGFTL+E+++V+V+LG+ V + R ++
# Sbjct: 19 AARGFTLIEIMVVVVILGILAALVVPKIMSRPDEA 53
#
#
# >VC0409
# Length = 178
#
# Score = 29.3 bits (64), Expect = 6.4
# Identities = 14/26 (53%), Positives = 21/26 (79%), Gaps = 2/26 (7%)
#
# Query: 20 MIAKR--GFTLVEMIIVIVVLGVALV 43
# +I KR GFTL+E+++VIV+LG+ V
# Sbjct: 2 VIMKRQGGFTLIELVVVIVILGILAV 27
#
#
# >RSp1292
# Length = 181
#
# Score = 28.9 bits (63), Expect = 7.0
# Identities = 17/42 (40%), Positives = 24/42 (56%), Gaps = 1/42 (2%)
#
# Query: 24 RGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKA 65
# RGFTLVEM+IVI ++ + LV + + QSA V +
# Sbjct: 8 RGFTLVEMVIVISIVAI-LVMFAAPSFQSTIQSARTTTEVNS 48
#
#
# >RSc0726
# Length = 328
#
# Score = 28.9 bits (63), Expect = 7.6
# Identities = 26/101 (25%), Positives = 46/101 (44%), Gaps = 9/101 (8%)
#
# Query: 24 RGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAE----LGRAVLDEVLGR 79
# RGF+LVE+++ +V+ + ++ T S Y ++ + + E V+ VL +
# Sbjct: 13 RGFSLVELMVALVI-ALLVLAATVSFYLMTRSTYTTIEDTSGLEERGQFALNVMTRVLRQ 71
#
# Query: 80 A-FDQHSGPNGGLPECVITET---AGRTLCSAPSALGKDTG 116
# A F + S NGG+ ++ +G C A K TG
# Sbjct: 72 AGFTKLSTDNGGIMRLSASDAPMLSGLDGCVGKEAAAKTTG 112
#
#
# >VC0410
# Length = 162
#
# Score = 28.9 bits (63), Expect = 7.6
# Identities = 10/20 (50%), Positives = 18/20 (90%)
#
# Query: 21 IAKRGFTLVEMIIVIVVLGV 40
# I +GFTL+E+++VI++LG+
# Sbjct: 3 IIGKGFTLIELVVVIILLGI 22
#
#
# >VC2728
# Length = 117
#
# Score = 28.9 bits (63), Expect = 8.7
# Identities = 11/30 (36%), Positives = 20/30 (66%)
#
# Query: 20 MIAKRGFTLVEMIIVIVVLGVALVGVTTSL 49
# M +KRGFTL+E+++ + + A + V S+
# Sbjct: 1 MKSKRGFTLLEVLVALAIFATAAISVIRSV 30
#
#
# >mlr6823
# Length = 124
#
# Score = 28.9 bits (63), Expect = 8.7
# Identities = 18/65 (27%), Positives = 34/65 (51%)
#
# Query: 16 PVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLDE 75
# P+ ++ GF+++EMI+ + +L + L + S+ S+ A V+AA R +L +
# Sbjct: 9 PLPQSSSEDGFSILEMIVAMTILALVLGIASQSIVLASRSIAAAKRQVEAARTVRMMLAD 68
#
# Query: 76 VLGRA 80
# RA
# Sbjct: 69 YEARA 73
#
#
# >alr4533
# Length = 502
#
# Score = 28.9 bits (63), Expect = 8.8
# Identities = 14/48 (29%), Positives = 27/48 (56%), Gaps = 3/48 (6%)
#
# Query: 8 SIPKGISMPVKPMIAKRGFTLVEMIIVIVV---LGVALVGVTTSLYPR 52
# ++ I +P K + G T +I++ ++ LG +LVG+T +L+ R
# Sbjct: 280 NLQAAIFLPFKEFFHRFGLTQASVILIFIILYKLGDSLVGITANLFLR 327
#
#
# >Cgl1503
# Length = 943
#
# Score = 28.5 bits (62), Expect = 9.9
# Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
#
# Query: 103 TLCSAPSALGKDTGESN--NTEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVF- 159
# T+ A +ALG D + N N +D + D L ++ EY+R Q
# Sbjct: 103 TMREAVAALGGDPNDVNPLNPAEMVIDHSVIVEAFGRPDALAKNVEIEYERNEERYQFLR 162
#
# Query: 160 YVSDNGGQFSATPA----TERTHYKRIALVIYDPQGNAYPFAAI 199
# + S++ F P + + + +A V++D +G AYP I
# Sbjct: 163 WGSESFSNFRVVPPGTGIVHQVNIEYLARVVFDNEGLAYPDTCI 206
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.316 0.134 0.377
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,976,153
Number of Sequences: 192987
Number of extensions: 934591
Number of successful extensions: 2786
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2744
Number of HSP's gapped (non-prelim): 64
length of query: 203
length of database: 59,019,183
effective HSP length: 104
effective length of query: 99
effective length of database: 38,948,535
effective search space: 3855904965
effective search space used: 3855904965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
S2: 63 (28.9 bits)