proteins
1 BUDs| 88 proteins |
NU | COG2165 | Type II secretory pathway, pseudopilin PulG | Help | |
|---|---|---|---|---|---|
| 9 from | query genome Vibrio cholerae (Vibrionales | Gammaproteobacteria) | ||||
| 1 BUDs | VC0408 (VC0409 VC0502 ) VC0410 VC0411 VC0828 VC2728 VC2729 VC2730 | ||||
203 letters 0
0 1027 = |||VC0411 (203) = -14
-50 92 = |RSc2301 (130) = -19
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= VC0411
(203 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
VC0411 400 e-111
RSc2301 40 0.003
VC0502 37 0.022
RSc3107 36 0.064
PA2675 35 0.14
RSp0468 34 0.24
sll1695 33 0.32
CC0176 33 0.32
RSc2310 33 0.42
CC0179 33 0.42
PA0681 33 0.54
PA4556 32 0.71
PA0678 32 0.71
DR1234 32 0.92
RSc0723 32 1.2
RSc0557 32 1.2
CAC0989 32 1.2
Cgl1503 31 2.1
BS_yhaM 31 2.1
BH2827 31 2.1
CAC2103 30 2.7
CC0178 30 3.5
BS_comGC 29 7.8
# >VC0411
# Length = 203
#
# Score = 400 bits (1027), Expect = e-111
# Identities = 203/203 (100%), Positives = 203/203 (100%)
#
# Query: 1 MRFAKSASIPKGISMPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQV 60
# MRFAKSASIPKGISMPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQV
# Sbjct: 1 MRFAKSASIPKGISMPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQV 60
#
# Query: 61 LSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNN 120
# LSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNN
# Sbjct: 61 LSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNN 120
#
# Query: 121 TEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFYVSDNGGQFSATPATERTHYK 180
# TEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFYVSDNGGQFSATPATERTHYK
# Sbjct: 121 TEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVFYVSDNGGQFSATPATERTHYK 180
#
# Query: 181 RIALVIYDPQGNAYPFAAIKGNY 203
# RIALVIYDPQGNAYPFAAIKGNY
# Sbjct: 181 RIALVIYDPQGNAYPFAAIKGNY 203
#
#
# >RSc2301
# Length = 130
#
# Score = 40.0 bits (92), Expect = 0.003
# Identities = 30/98 (30%), Positives = 47/98 (47%), Gaps = 17/98 (17%)
#
# Query: 15 MPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLD 74
# M P +RGFTL+E+++V+ ++G+ L T PR S E+ GRA +
# Sbjct: 1 MTQAPHARRRGFTLIELVVVMAIIGLLL----TLALPRYFHSIER---------GRAQVQ 47
#
# Query: 75 E----VLGRAFDQHSGPNGGLPECVITETAGRTLCSAP 108
# + V+ A D++ G NG P+ + A R L P
# Sbjct: 48 QQNLAVIRDAIDKYYGDNGQYPDTLDDLVAKRYLRGIP 85
#
#
# >VC0502
# Length = 174
#
# Score = 37.4 bits (85), Expect = 0.022
# Identities = 35/106 (33%), Positives = 46/106 (43%), Gaps = 9/106 (8%)
#
# Query: 20 MIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQS-AEQVLSVKAAELGRAVLDEVLG 78
# M +GFTL+E+II IV+LGV V SK + A +LSV A ++ L
# Sbjct: 1 MSKNQGFTLIELIIAIVILGVIAVIAAPRFINISKDAKANTMLSVAAG------MESALT 54
#
# Query: 79 RAFDQH--SGPNGGLPECVITETAGRTLCSAPSALGKDTGESNNTE 122
# Q G + G E I L PS GKD+ E N +
# Sbjct: 55 LLHSQALIEGQDIGKGEITINGVKTPLLNGYPSVNGKDSFEEINAQ 100
#
#
# >RSc3107
# Length = 165
#
# Score = 35.8 bits (81), Expect = 0.064
# Identities = 18/57 (31%), Positives = 34/57 (59%), Gaps = 2/57 (3%)
#
# Query: 16 PVKPMIAKRGFTLVEMIIVIVVLGVAL--VGVTTSLYPRSKQSAEQVLSVKAAELGR 70
# P + +RGFTL+E+++V+V++G+ L V V + PRS+ + + + EL +
# Sbjct: 7 PHRAARVRRGFTLLELLVVVVIIGIVLGVVAVNATPNPRSQLADDAQKLARLIELAQ 63
#
#
# >PA2675
# Length = 144
#
# Score = 34.7 bits (78), Expect = 0.14
# Identities = 17/52 (32%), Positives = 33/52 (62%)
#
# Query: 22 AKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVL 73
# A++GFTL+EMI+V+V++G+ + V L+ ++ ++ Q + L A+L
# Sbjct: 5 AQQGFTLLEMIVVLVIIGMLMGLVGPRLFNQADKAKAQTADTQVKMLKGALL 56
#
#
# >RSp0468
# Length = 144
#
# Score = 33.9 bits (76), Expect = 0.24
# Identities = 26/97 (26%), Positives = 45/97 (45%), Gaps = 12/97 (12%)
#
# Query: 13 ISMPVKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAV 72
# +S + M RGFTL+E+++V+ ++G+ V + Q + + V A+L
# Sbjct: 3 VSSKLNRMQEARGFTLLELLVVVAIIGLLAAYVGPRYF---AQLGKSEVGVAKAQL---- 55
#
# Query: 73 LDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAPS 109
# + +A DQ+ G P TE + L SAP+
# Sbjct: 56 --QAFEKAVDQYRLDTGHFP---TTEQGLKALTSAPT 87
#
#
# >sll1695
# Length = 170
#
# Score = 33.5 bits (75), Expect = 0.32
# Identities = 27/104 (25%), Positives = 49/104 (46%), Gaps = 5/104 (4%)
#
# Query: 23 KRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLDEVLGRAFD 82
# +RGFTL+E+++V+++LGV +L+ + ++ E + +G+A +A
# Sbjct: 21 QRGFTLLELLVVVIILGVLGAMTLPNLFSQIGKAREAEAKQILSAIGQAQQSYFFEKASF 80
#
# Query: 83 QHSGPNGGLPECVITETAGRTLCSAPSALGKDTGESNNTEFNDV 126
# S N L I+ + S P +G D +S+ T N V
# Sbjct: 81 AES--NQALE---ISFQSNYYDISEPQLIGTDVAKSSATATNGV 119
#
#
# >CC0176
# Length = 150
#
# Score = 33.5 bits (75), Expect = 0.32
# Identities = 14/34 (41%), Positives = 24/34 (70%)
#
# Query: 23 KRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQS 56
# + GFTLVEM++VIV+LG+ V ++ P +++
# Sbjct: 15 RAGFTLVEMMVVIVILGLLATVVAINVLPNQEKA 48
#
#
# >RSc2310
# Length = 155
#
# Score = 33.1 bits (74), Expect = 0.42
# Identities = 22/68 (32%), Positives = 37/68 (54%), Gaps = 9/68 (13%)
#
# Query: 25 GFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLDEVLGRAFDQH 84
# GFTL+E+++V+V++G+ L G+ Y Q + L + A++ E LG+A DQ+
# Sbjct: 26 GFTLLELLVVMVIIGL-LAGLVAPQY--FDQIGKSNLKIAKAQI------ESLGKALDQY 76
#
# Query: 85 SGPNGGLP 92
# G P
# Sbjct: 77 RLDVGAYP 84
#
#
# >CC0179
# Length = 196
#
# Score = 33.1 bits (74), Expect = 0.42
# Identities = 25/81 (30%), Positives = 42/81 (50%), Gaps = 5/81 (6%)
#
# Query: 24 RGFTLVEMIIVIVVLG-VALVGVTTSLYPRSKQSAEQVLSVKAAELG--RAVLDEVLGRA 80
# +GFTL+EM++ +++ + GV + Q+A +V + AEL RAV+ L +A
# Sbjct: 2 KGFTLIEMMVALLIFALITAAGVAVMSSTLNNQTAVRVRVERYAELQRMRAVVKADLSQA 61
#
# Query: 81 FDQHSGPNGGLPECVITETAG 101
# + + GLP +T AG
# Sbjct: 62 ATRRTRGEDGLPS--LTAFAG 80
#
#
# >PA0681
# Length = 149
#
# Score = 32.7 bits (73), Expect = 0.54
# Identities = 13/34 (38%), Positives = 23/34 (67%)
#
# Query: 23 KRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQS 56
# +RGFTL+E+++V+V+LG+ V + R Q+
# Sbjct: 16 QRGFTLIEIMVVVVILGILAAMVVPKVLDRPDQA 49
#
#
# >PA4556
# Length = 141
#
# Score = 32.3 bits (72), Expect = 0.71
# Identities = 18/48 (37%), Positives = 30/48 (62%), Gaps = 5/48 (10%)
#
# Query: 23 KRGFTLVEMIIVIVVLGVALVGVTTSLYP----RSKQSAEQVLSVKAA 66
# ++GFTL+EM++V+ V+G+ L+G+ Y RS ++ Q L AA
# Sbjct: 5 QKGFTLLEMVVVVAVIGI-LLGIAIPSYQNYVIRSNRTEGQALLSDAA 51
#
#
# >PA0678
# Length = 149
#
# Score = 32.3 bits (72), Expect = 0.71
# Identities = 11/27 (40%), Positives = 21/27 (77%)
#
# Query: 25 GFTLVEMIIVIVVLGVALVGVTTSLYP 51
# GFTL+E+++V+V++G+A ++ S P
# Sbjct: 8 GFTLIELMVVLVIVGIATAAISLSARP 34
#
#
# >DR1234
# Length = 293
#
# Score = 32.0 bits (71), Expect = 0.92
# Identities = 18/50 (36%), Positives = 29/50 (58%), Gaps = 3/50 (6%)
#
# Query: 25 GFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLD 74
# GFTLVE+++ + +LG+ L + T S+ S + S AEL + VL+
# Sbjct: 12 GFTLVELLVALALLGIVLSALVTFFSQGSRVSTQ---SSSRAELQQEVLN 58
#
#
# >RSc0723
# Length = 161
#
# Score = 31.6 bits (70), Expect = 1.2
# Identities = 20/66 (30%), Positives = 39/66 (58%), Gaps = 9/66 (13%)
#
# Query: 19 PMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAVLDEVLG 78
# P+ +RGFTL+E++IV++V+ + ++T YP Q ++ +A +A L E +
# Sbjct: 8 PLPHQRGFTLIELMIVVIVVAI----LSTIAYPSYTQFVQKSRRTQA----KAALMENM- 58
#
# Query: 79 RAFDQH 84
# + F++H
# Sbjct: 59 QLFERH 64
#
#
# >RSc0557
# Length = 173
#
# Score = 31.6 bits (70), Expect = 1.2
# Identities = 26/108 (24%), Positives = 44/108 (40%), Gaps = 24/108 (22%)
#
# Query: 23 KRGFTLVEMIIVIVVLGV----------------------ALVGVTTSLYPRSKQSAEQV 60
# +RGFTL+E++IV+ ++G+ AL G +L + +A+
# Sbjct: 13 QRGFTLIELMIVVAIIGILAALAIPAYQDYTIRSRVVEGLALAGQAKALVVENAANAQSS 72
#
# Query: 61 LSVKAAELGRAVLDEVLGRAFDQHSGPNGGLPECVITETAGRTLCSAP 108
# LS+ +A L + V D +G + +TE TL P
# Sbjct: 73 LSLGSASLPAS--KNVSALNIDSSTGEIAVVYAPAVTEAGANTLVLTP 118
#
#
# >CAC0989
# Length = 125
#
# Score = 31.6 bits (70), Expect = 1.2
# Identities = 16/56 (28%), Positives = 29/56 (51%)
#
# Query: 17 VKPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQVLSVKAAELGRAV 72
# +K I +GFTL+E+IIVI +L + + S+ ++ + + A L A+
# Sbjct: 1 MKNRINNKGFTLIELIIVIAILAILAAILVPSISAYKIKAEKSNIQASARTLSHAI 56
#
#
# >Cgl1503
# Length = 943
#
# Score = 30.8 bits (68), Expect = 2.1
# Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 7/104 (6%)
#
# Query: 103 TLCSAPSALGKDTGESN--NTEFNDVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQVF- 159
# T+ A +ALG D + N N +D + D L ++ EY+R Q
# Sbjct: 103 TMREAVAALGGDPNDVNPLNPAEMVIDHSVIVEAFGRPDALAKNVEIEYERNEERYQFLR 162
#
# Query: 160 YVSDNGGQFSATPA----TERTHYKRIALVIYDPQGNAYPFAAI 199
# + S++ F P + + + +A V++D +G AYP I
# Sbjct: 163 WGSESFSNFRVVPPGTGIVHQVNIEYLARVVFDNEGLAYPDTCI 206
#
#
# >BS_yhaM
# Length = 314
#
# Score = 30.8 bits (68), Expect = 2.1
# Identities = 15/66 (22%), Positives = 36/66 (53%), Gaps = 3/66 (4%)
#
# Query: 125 DVDDYITSSPIPVTDVLGTDISSEYQRFSVSIQ---VFYVSDNGGQFSATPATERTHYKR 181
# ++DD++ ++PIP +++ T ++ + +IQ F V + +F PA + H++
# Sbjct: 97 NIDDFLETAPIPKNEMMDTITQYIFEMKNPNIQRITRFLVKKHEAEFMDYPAATKNHHEF 156
#
# Query: 182 IALVIY 187
# ++ + Y
# Sbjct: 157 VSGLAY 162
#
#
# >BH2827
# Length = 102
#
# Score = 30.8 bits (68), Expect = 2.1
# Identities = 13/42 (30%), Positives = 27/42 (63%)
#
# Query: 18 KPMIAKRGFTLVEMIIVIVVLGVALVGVTTSLYPRSKQSAEQ 59
# KP + GFTLVEM+IV++++ + L+ S+ ++ + ++
# Sbjct: 3 KPFHHQAGFTLVEMMIVLMIISILLLVALPSMTKNNEVAGDK 44
#
#
# >CAC2103
# Length = 120
#
# Score = 30.4 bits (67), Expect = 2.7
# Identities = 15/27 (55%), Positives = 20/27 (73%), Gaps = 3/27 (11%)
#
# Query: 20 MIAKRGFTLVEMII---VIVVLGVALV 43
# M+ KRGFTL+E+II +I +LG LV
# Sbjct: 1 MMKKRGFTLIELIISMSIIAILGAILV 27
#
#
# >CC0178
# Length = 123
#
# Score = 30.0 bits (66), Expect = 3.5
# Identities = 21/69 (30%), Positives = 34/69 (48%), Gaps = 8/69 (11%)
#
# Query: 19 PMIAKRGFTLVEMIIVIVVLGVA------LVGVTTSLYPRSKQS--AEQVLSVKAAELGR 70
# P ++ GFTL+E+++ + + +A L G T R + AE VL +A E
# Sbjct: 3 PKRSEAGFTLIELLVALAIFSLAVLALLNLAGENTRAGGRLQDRILAEVVLDNRAIEAVT 62
#
# Query: 71 AVLDEVLGR 79
# +V+ LGR
# Sbjct: 63 SVMPPALGR 71
#
#
# >BS_comGC
# Length = 98
#
# Score = 28.9 bits (63), Expect = 7.8
# Identities = 17/56 (30%), Positives = 31/56 (55%), Gaps = 4/56 (7%)
#
# Query: 23 KRGFTLVEMIIVIVVLGVALV----GVTTSLYPRSKQSAEQVLSVKAAELGRAVLD 74
# ++GFTLVEM+IV+ ++ + L+ VT K+ E + ++ A++ LD
# Sbjct: 3 EKGFTLVEMLIVLFIISILLLITIPNVTKHNQTIQKKGCEGLQNMVKAQMTAFELD 58
#
#
Database: myva
Posted date: Sep 17, 2002 10:27 AM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.316 0.134 0.377
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,976,153
Number of Sequences: 192987
Number of extensions: 934591
Number of successful extensions: 2786
Number of sequences better than 10.0: 64
Number of HSP's better than 10.0 without gapping: 41
Number of HSP's successfully gapped in prelim test: 23
Number of HSP's that attempted gapping in prelim test: 2744
Number of HSP's gapped (non-prelim): 64
length of query: 203
length of database: 59,019,183
effective HSP length: 104
effective length of query: 99
effective length of database: 38,948,535
effective search space: 3855904965
effective search space used: 3855904965
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 63 (28.9 bits)
S2: 63 (28.9 bits)