Publishers of journals indexed in MEDLINE are encouraged to submit citation and abstract data electronically for inclusion in PubMed. Electronic submissions ensure that citations and abstracts are available to the public within 48 hours of uploading a properly formatted XML file, and meets one of the requirements to add an icon on PubMed citations via participation in LinkOut. LinkOut is a service that allows you to link directly from a PubMed citation to the journal website.
PubMed only accepts citation & abstract data uploaded by File Transfer Protocol (FTP) that is in the PubMed XML tagged format. FTP accounts are provided for publishers to send data in a confidential and reliable manner. These citations are then added to PubMed and PubMed Unique Identifiers (PMIDs) are returned to the publisher.
Interested in uploading citation & abstract data to PubMed for your journal? Get Started at the Data Provider Quick Start.
Have questions about the process? Then please contact the Data Provider Support Team [publisher@ncbi.nlm.nih.gov]
How do I know if my journal is indexed in MEDLINE/PubMed?
How do I supply XML tagged citation & abstract data to PubMed?
How do I submit XML tagged citation and abstract data for Online-only articles?
Can an ESSN be supplied instead of an ISSN?
What is an Article Identifier?
How do I submit tags for Volume and Issue Supplements?
How should the Publication Date be submitted?
How should I submit citations to articles in languages other than English?
Can Collective Author Names be supplied to PubMed?
Can Single Personal Author Names be supplied to PubMed?
Should I submit author initials or full author names in my XML file?
What information should be included in the Affiliation tag?
Can I include position, degree, or honorific title in the <FirstName>, <LastName>, <Middlename>, or <Suffix> tags?
How should abstract section headings be submitted?
How should I submit mathematical or chemical formulas or tables in the Abstract tag?
How do I use the <History> tag?
How do I validate my XML file before uploading it?
Does PubMed provide a citation matching service?
What is File Transfer Protocol (FTP)?
How do I submit files via FTP?
How should filenames be constructed?
How do I submit a sample XML file with my citation data?
What is the archive subdirectory for?
May I submit an incomplete issue and then send the additional issue citations at a later date?
What types of articles are accepted for PubMed?
How do I determine if a PMID has been deleted?
How do I correct an error in electronically submitted data?
I received the Loader Reports, but I cannot find my citations in PubMed.
How do I interpret the PubMed Loader Report?
Can the PubMed Loader Report be sent via FTP instead of email?
How do I create links to the issues of my journal?
There are a number of ways to determine if your journal is indexed in MEDLINE/PubMed. You could search for it in the NLM Catalog if your journal is found then select the Expanded display and look for the "Indexed in" field. Journals that are currently indexed will have an open date range.
NLM also provides the following journal lists that are available by FTP:
Journals included in PubMed: | Journals included in the Entrez molecular biology databases such as Nucleotide, Protein, and Genome: | Journals in PubMed and the molecular biology databases: |
Uncompressed | Uncompressed | Uncompressed |
GNU zip | GNU zip | GNU zip |
UNIX Compress | UNIX Compress | UNIX Compressftp.ncbi.nih.gov/pubmed/J_Medline.zip |
PKZIP | PKZIP | PKZIP |
If you cannot find your journal in the NLM Catalog or if your journal does not have an "Indexed in" field then it probably needs to apply for selection. The Journal Selection for MEDLINE fact sheet describes the journal selection policy and criteria. The fact sheet includes information about the application process.
The simplest way to get started is to copy the Example of a Standard XML file into a plain text editor and edit the text within each tag to fit your journal. If a tag is not used by your journal simply delete it from your file. To access an editable plain-text template of the Standard XML file, click here.
Once you have finished editing the tags then validate the file; save the file (click here for tips on file names) and submit the sample XML file for review.
Citation and abstract data for an Online-only article should appear very similar to a printed article. The following are common differences:
Sometimes online-only articles do not have page numbers; instead they have a doi. If this is the case the correct tag to use is <ELocationID> instead of the <FirstPage> tag. NOTE: NLM strongly recommends the use of the letter "E" or “e” when paginating Online Only articles. (For example, pages E1-E12.) The “E-pagination” should appear in the <FirstPage> and <LastPage> tags in the XML files. We see using the "E" as a service to the users of PubMed, as many associate "E" page numbers with this special class of journals. Online Only articles that are paginated with a single page number per article (article 1, article 2), whether in the <FirstPage> or the new <ELocationID EIdType=”pii”> tag, are often mistaken by users as single page articles, not research articles of greater substance.
Online-only articles may also have individual publication dates instead of a publication date for the complete Issue or Volume. In this case the <PubDate PubStatus="epublish"> should be used with the Year, Month and Day of online publication. If an online-only article has two publications dates, individual & Issue/Volume, then the <PubDate> tag should NOT have a PubStatus attribute & the <History> tag should be used.
The following are examples of the PubMed display for Online-only articles:
AAPS J. 2008 Mar 23;10(1):E1-17.
This Online-only article has a Year & Month & Day of publication (2008 Mar 23); a Volume (10); Issue (1) and has chosen to use the FirstPage tag (E1) & LastPage tag (E17).
If the XML file also included the ELocationID tags, then the doi would be displayed like so:
AAPS J. 2008 Mar 23;10(1):E1-17. doi: 10.1208/aapsj1001001.
If the XML file did NOT include the FirstPage & LastPage tags, but had the ELocationID tags, the PubMed display would be like so (if both ELocationID tags are sent, both will display in the absence of the page tags):
AAPS J. 2008 Mar 23;10(1). pii: aapsj1001001. doi: 10.1208/aapsj1001001.
Here is an example of the XML:
<FirstPage></FirstPage>
<LastPage></LastPage>
<ELocationID EIdType=”doi”>10.1208/aapsj1001001</ELocationID>
<ELocationID EIdType=”pii”>aapsj1001001</ELocationID>
Also if this is the first time Online-only articles have been released for the title please contact us at publisher@ncbi.nlm.nih.gov with the following information:
Full Journal title:
Electronic ISSN:
URL:
First volume/issue to contain Online-only articles:
Provider: If you already have an account at NCBI enter it here. If not, enter the name of your organization.
An ESSN, or electronic ISSN number, can be supplied in the <Issn> tags if the ESSN exists in our NLM Catalog. If you do not see the ESSN number in the catalog, please write to publisher@ncbi.nlm.nih.gov and we will have the number added to our records. Note that the ESSN must be a registered number.
All Article Identifiers are optional. An Article Identifier can take one of two forms; a PII or a DOI.
A PII, or Publisher Item Identifier, is any internal reference identifier used in the publishing process. This identifier is assigned by the publisher.
A DOI, or Digital Object Identifier, is a number assigned by an international organization. The DOI System is a system for identifying and exchanging intellectual property in the digital environment. DOIs are issued to registrants by the DOI Registration Agency. More information about this standardized format can be obtained at http://www.doi.org/.
Article Identifiers (PII and DOI) are available for use in LinkOut which allows providers to create links from article citations in PubMed to the full-text article hosted on the publisher websites.
Use the following guidelines for Supplements:
Supplement 1 for Volume 6:
<Volume>6 Suppl 1</Volume>
<Issue></Issue>
Issue 4, Supplement 2 for Volume 7:
<Volume>7</Volume>
<Issue>4 Suppl 2</Issue>
Issue 4 Pt 1 for Volume 7:
<Volume>7</Volume>
<Issue>4 Pt 1</Issue>
Issue Part 3 for Volume 7 (it has Volume 7 Part 3 on the cover):
<Volume>7</Volume>
<Issue>Pt 3</Issue>
The Publication Date of a printed or electronic journal should be submitted in exactly the same format as appears on the cover of the printed issue or on the Table of Contents (ToC) page of journal website. Here are some examples:
Issue cover/ToC display: 2008 May
Submit: <PubDate>
<Year>2008</Year>
<Month>May</Month>
</PubDate>
Issue cover/ToC display: Fall 2008
Submit: <PubDate>
<Year>2008</Year>
<Season>Fall</Season>
</PubDate>
Issue cover/ToC display: Dec 21 2008
Submit: <PubDate>
<Year>2008</Year>
<Month>Dec</Month>
<Day>21</Day>
</PubDate>
Issue cover/ToC display: 2008
Submit: <PubDate>
<Year>2008</Year>
</PubDate>
Issue cover/ToC display: Nov-Dec OR November/December OR November-December 2008
Submit: <PubDate>
<Year>2008</Year>
<Month>Nov-Dec</Month>
</PubDate>
Citations to non-English articles should include the vernacular title and/or a translated English title. Only English abstracts are included in PubMed. Do not submit an abstract if an English language abstract is not published with the journal article. See our Instructions for Non-English Languages.
Yes. A Collective Author Name, the name of the authoring committee or organization, should be included by using the <CollectiveName> tag within an <Author> tag.
Here is an example of a PubMed citation with a Collective Author Name (as well as an individual Author name):
Lawrence WT; Plastic Surgery Educational Fourndation DATA Committee. .
Arnica.
Plast Reconstr Surg. 2003 Sep 15;112(4):1164-6. No abstract available.
PMID: 12973238 [PubMed - indexed for MEDLINE]
This is the tagging for the same citation as it appears in the XML file:
<AuthorList>
<Author>
<FirstName>W.</FirstName>
<MiddleName>Thomas</MiddleName>
<LastName>Lawrence</LastName>
</Author>
<Author>
<CollectiveName>Plastic Surgery Educational Foundation DATA Committee</CollectiveName>
</Author>
</AuthorList>
Yes. A Single Personal Author Name, when a person has only one name, should be included by using the EmptyYN attribute for the <FirstName> tag within an <Author> tag. The default value for the EmptyYN attribute is "N"; indicating that the <FirstName> tag should not be empty.
Here is an example of a PubMed citation with a Single Personal Author Name (as well as authors with a FirstName and LastName):
Matiullah, Rehman S, Rehman S, Mati N, Ahmad S. .
Some more new etchants for CR-39 detector.
Radiat Meas. 2005 Oct;39(5):551-5.
PMID: 16094777 [PubMed - indexed for MEDLINE]
This is the tagging for the same citation as it appears in the XML file:
<AuthorList>
<Author>
<FirstName EmptyYN="Y"></FirstName>
<MiddleName></MiddleName>
<LastName>Matiullah</LastName>
</Author>
<Author>
<FirstName EmptyYN="N">S.</FirstName>
<LastName>Rehman</LastName>
</Author>
</AuthorList>
Please submit author names exactly as they appear in the published article.
Full author names are searchable in PubMed using the [FAU] qualifier. See the PubMed Help for more details. Full author names can be viewed in two citation formats: XML and MEDLINE.
Submit the complete address information including city, state/province, and country, zip code, and email address, for example:
Affiliation data for only the first author will be displayed in PubMed.
No. Do not include titles or degrees because they will cause an incorrect author name to appear in the PubMed citation.
Submit abstract section headings in all uppercase letters followed by a colon and space, for example:
Common section headings are: BACKGROUND, METHODS, RESULTS, and CONCLUSIONS.
Simple formulas:
Chemical - do not use <sup> or <inf> in chemical formulas, for example water should be submitted as H20, carbon dioxide as CO2.
Mathematical - simple mathematical formulas should be submitted with <sup> or <inf>, for example sin(x<sup>2</sup>/2).
Complex formulas:
Submit the following in place of complex mathematical or chemical formulas or tables within the abstract:
[Formula: see text]
[Table: see text]
This text should only be used for formulas or tables that cannot be represented in any other manner.
The <History> tag is an optional tag available to publishers who want to include information about the publication history of their citations.
The <History> tag includes PubStatus attributes, which may contain only one of the following values for each date in the publication history:
<PubDate PubStatus = "received">
<PubDate PubStatus = "accepted">
<PubDate PubStatus = "revised">
<PubDate PubStatus = "aheadofprint">
<PubDate PubStatus = "epublish">
Any PubDate in History must be an exact PubDate, one that includes valid values in the Year, Month and Day tags.
The <History> tag plays an important part in the process of submitting Ahead of Print citations. If a citation is submitted using the "aheadofprint" attribute in the <PubDate> tag and is later replaced using the "ppublish" attribute, we recommend that the publisher "move" the Ahead of Print date to the <History> tag in the Replacement File. This will enable the citation to retain the ahead of print publish date in PubMed. For more details, see our All About Ahead of Print page.
The <PubDate PubStatus = "epublish"> can be used to tag the individual publication date of an online-only article.
Citations with PubStatus=”epublish” or PubStatus=”aheadofprint” can only be submitted for publication date years greater than or equal to 2000.
Use the PubMed Citation XML File Validator to validate your XML file before uploading it. The validator error messages are designed to be self-explanatory. However if you have questions then please contact the Data Provider Support Team [publisher@ncbi.nlm.nih.gov]
A citation matching service is available for publishers to obtain the PMIDs of the references in their articles and link these references back to PubMed.
File Transfer Protocol (FTP) is a network protocol used to upload files from one computer to another computer via a network accessed by an FTP client. Most web browsers can be used as an FTP client. You can also download different FTP clients depending on your needs.
From a standard FTP client:
At a command prompt type: ftp-private.ncbi.nih.gov and press enter.
Type your login name at the login prompt and press enter. (Contact us to obtain a private FTP account.)
Type your password at the password prompt and press enter.
You should now be logged into the FTP server. If you receive an error message, check your login information, type "bye" followed by enter, and retry steps 1-3.
Type "bin" and press enter. This changes your FTP server to BINARY mode.
Type the "put" command, followed by your pathname or drive and filename and press enter. (For example, "put C:\filename" or "put /home/testfiles/journalv6n3".)
Type "dir" and press enter to display the files in your FTP directory.
Type "bye" to disconnect from the server and close the FTP session.
From a browser window:
In the URL address box type in: ftp://ftp-private.ncbi.nih.gov and press enter.
From the File pull-down menu, choose "Login As".
If you are using Internet Explorer 7 then click on Page and choose "Open FTP Site in Windows Explorer". In the new window go to the File pull-down menu, choose "Login As".
Type in your username and password in the dialog box. The screen will display your directory with an ‘archive’ folder inside.
Add new files here at the top level of the directory. DO NOT put them in the ‘archive’ folder! They will automatically be placed there after processing.
Note: If you receive a server error please try again 30 minutes later.
File names should be unique. We do not require a specific naming convention but suggest you include journal title abbreviation, volume, and issue, e.g., AJPv36i12.sgml. The file name should not contain any spaces or UTF-8 character symbols (e.g. the letter a with an acute symbol) and not exceed 32 characters. We prefer files to be submitted in plain ASCII text format. However, we can accept the compressed file formats .tar, .zip, and .gz
Create a sample file based on the PubMed DTD. (Click here for an Example of an XML file.)
Contact publisher@ncbi.nlm.nih.gov to request FTP login information.
FTP the sample file to the ftptest directory on NCBI using login information.
Send a notification letter to publisher@ncbi.nlm.nih.gov using the following format:
To: publisher@ncbi.nlm.nih.gov
Subject: TEST: full journal title
FILENAME:
TITLE:
ISSN:
VOLUME:
ISSUE:
URL: (if any)
PUBLISHER: Publisher for this journal
PROVIDER: Provider if different from Publisher. If you already have an FTP account with NCBI enter it here. If not, enter the name of your organization.
Note: Use a separate email notification for each journal title submitted for review.
Files are stored in the archive subdirectory after they have been loaded into PubMed. Do not place citation files in the archive subdirectory.
No. Only submit files that include the complete set of citations for an issue. Incomplete issues can result in duplicate citations and require manual operations to correct. The only exceptions to this rule are citations for articles that are published electronically in advance of the print journal (Ahead of Print articles) or articles for Online-Only journals published individually. Details on sending Ahead of Print articles are available from the Ahead of Print page.
We require the submission of research articles, editorials, case studies, and letters to the editor.
We ask that you do not submit data for the following items: book reviews, advertisements, announcements, erratum notices, software and equipment reviews, and papers to appear in forthcoming issues. In addition, do not submit individual citations for abstracts or shortened versions of presentations or papers from conference proceedings unless the full-text of the article is published. In most instances, NLM does create a single citation to cover a group of meeting abstracts or shortened versions of conference proceedings; for example, see PMIDs 12526142, 12516608, and 12516600.
For a list of all PMIDs that have been deleted since October 2004 click here:
ftp://ftp.ncbi.nlm.nih.gov/pubmed/deleted_pmids.txt
This plain text file is updated every night at 10 PM EST. If a PMID is Restored to PubMed it will of course be removed from the file during the nightly update.
Citations are deleted from PubMed for one or more of the following reasons:
1) The citation was verified as a duplicate citation.
2) The NLM Indexing staff determined the citation was "non-indexable" material. The following are a few examples of "non-indexable" material: book reviews, advertisements, announcements, erratum notices, society calendars, software and equipment reviews, papers to appear in forthcoming issues, forwards, table of contents, and citations for articles *not* printed/published in full. Short reports, news items, letters and editorials are also subject to deletion.
3) The citation was identified as an incomplete issue. Data Providers who submit citations electronically to NLM for PubMed are required to upload citations to all articles in an issue on the same day unless otherwise specified. For example Ahead of Print citations are *not* required to be uploaded as a complete issue.
An error found in a PubMed record can be corrected, but whether the correction can be made by the data provider depends on the publication status of the citation in question and whether the error also occurred in the original version of the article (print or online). Please see our Correcting Errors in PubMed page for more information.
Citations are usually indexed by noon of the next day. Occasionally, because of technical problems, indexing of new citations may take several days. Contact us at publisher@ncbi.nlm.nih.gov if the articles are not retrievable in 3-5 days.
Below is an example of a typical Loader Report. Contact us at publisher@ncbi.nlm.nih.gov if you have not received the Loader Report within one business day of submitting your file.
Journal|Year|Volume|Issue|First Page|First Author|Article ID|PubMed ID
File GSEv40i3.xml(6 articles)
Genet Sel Evol|2008|40|3|241|Doeschl-Wilson AB|g07060|18400148
Genet Sel Evol|2008|40|3|265|Lee SH|g07054|18400149
Genet Sel Evol|2008|40|3|279|Ibanez-Escriche N|g07028|18400150
Genet Sel Evol|2008|40|3|295|Tarres J|g07027|18400151
Genet Sel Evol|2008|40|3|309|Pritchard T|g07035|18400152
Genet Sel Evol|2008|40|3|321|Cinkulov M|g07062|18400153
Total processed: 6 article(s), 6 were created.
Total processed: # article(s), # were created, # were replaced, # were rejected.
The report contains the filename (XGEv133i2.xml), followed by the number of articles in the file. This is followed by a listing of articles created with each article containing the following fields: MEDLINE Title Abbreviation, Year, Volume, Issue, First Page, First Listed Author, Article ID (if present in the file), and PubMed Identifier (PMID). Following the batch of articles is a "Total processed" message indicating the number of articles processed from the uploaded file and the number created, replaced, and/or rejected.
Rejected articles in a Loader Report will often be annotated with error messages. Here is a list of possible error messages:
Cannot replace Article: Article does not have " [PubMed – as supplied by publisher] " status. The <Replaces> tag can only be used if the citation is currently in the " [PubMed – as supplied by publisher] " status. Please see our Correcting Errors in PubMed documentation for more information.
Cannot find article by ID. The doi or pii listed in the <Replaces> tag IdType attribute does not exist in a PubMed citation. Please verify that the doi or pii is accurate. If necessary remove the <Replaces> tag and reload the file to create the article rather than ‘replace’ a non-existent PubMed citation.
Article matches PMID = , which is not in " [PubMed – as supplied by publisher] " status. This message means the data is already in PubMed and it cannot be modified by a Replacement file.
ISSN not found in NCBI database: ISSN= Title= . There are two actions you can take in response to this: 1) Verify the ISSN is correct. 2) Confirm that you have notified the Data Provider Support Team of any recent title changes.
Not a current MEDLINE journal: ISSN= Title= . There are two actions you can take in response to this: 1) Verify the ISSN is correct. 2) Confirm that you have notified the Data Provider Support Team of any recent title changes.
Article matches PMID= To update use Replaces tag. Please refer to the Instructions for Replacement Files documentation for more information.
Cannot replace Article: PMID does not exist. NLM has deleted the PMID or you have provided an invalid PMID number. Please refer to the "How do I determine if a PMID has been deleted?" question.
Wrong provider. Verify that you have received Approval from the Data Provider Support Team.
Partial match. Submitted citation matched an existing PubMed citation. Volume, issue, page and Article Id matched but there are differences in the author, title, or publication date tags.
Invalid Year / Invalid Month / Invalid Day. The message will specify whether the invalid date appeared in the PubDate tag within <Journal> or the PubDate tag within <History>. <Year> can only contain 4-digit ranging between 1966 and 2010. <Month> can only contain the numbers 1-12, the month (in English) or the first three letters of the English months. NOTE: The only PubStatus attribute that allows for a dual month in <Month> is ppublish. <Day> can only contain the numbers 1-31.
Month tag is missing or empty; Day tag is present.
ISSN tag is missing or empty.
Both Volume and Issue tags are missing or empty. A valid file must contain a value in the Volume tag or the Issue tag, or both.
Replaces tag has invalid symbols or is empty. <Replaces> tag cannot be empty. Please refer to the Instructions for Replacement Files documentation for more information.
FirstPage tag is missing or empty. In a <PubDate PubStatus ="ppublish" article the <FirstPage> tag cannot be empty.
FirstPage tag is missing or empty; LastPage is present. If an article is only one page in length the value should appear in the <FirstPage> tag not the <LastPage> tag.
FirstPage / LastPage tag has invalid symbols. Invalid symbols are anything other than letters or numbers.
Abstract is too short. The text within the <Abstract> tags must be more than 50 characters in length. If the Article does not have an abstract then the <Abstract> tag should be left empty. The phrase "No Abstract Available" is not necessary in XML files.
CODE | LANGUAGE |
---|---|
EN | English |
AF | Afrikaans |
SQ | Albanian |
AM | Amharic |
AR | Arabic |
AZ | Azerbaijani |
HY | Armenian |
BN | Bengali |
BS | Bosnian |
BG | Bulgarian |
CA | Catalan |
ZH | Chinese |
HR | Croatian |
CS | Czech |
DA | Danish |
NL | Dutch |
EO | Esperanto |
ET | Estonian |
FI | Finnish |
FR | French |
GD | Scottish Gaelic |
KA | Georgian |
DE | German |
EL | Greek, Modern |
HE | Hebrew |
HU | Hungarian |
HI | Hindi |
IS | Icelandic |
ID | Indonesian |
IT | Italian |
JA | Japanese |
RW | Kinyarwanda |
KO | Korean |
LA | Latin |
LV | Latvian |
LT | Lithuanian |
MK | Macedonian |
ML | Malayalam |
MI | Maori |
MS | Malay |
MU | Multilingual |
NO | Norwegian |
FA | Persian |
PL | Polish |
PT | Portuguese |
PS | Pushto |
RO | Romanian |
RU | Russian |
SA | Sanskrit |
SR | Serbo-Croatian, Cyrillic |
SR | Serbo-Croatian, Roman |
SK | Slovak |
SL | Slovene |
ES | Spanish |
SV | Swedish |
TH | Thai |
TR | Turkish |
UK | Ukrainian |
UR | Urdu |
VI | Vietnamese |
CY | Welsh |
FirstName / LastName / CollectiveName tag is missing or empty. Message will specify which Author tag the error occurred in. (Author 1, Author 2, etc.) If either the FirstName or LastName tag is present and contains text both must be present and contain text. If neither the FirstName nor LastName tag is present then the CollectiveName tag must be present and contain text.
FirstName / LastName contains invalid characters. Message will specify which Author tag the error occurred in. (Author 1, Author 2, etc.). The following are invalid characters:
! " # $ % & @ ( ) * + / ; : ` < = > ? ^ { | } [ \ ]
Ahead-of-print Article must have "pii" or "doi". See our page "All About Ahead of Print" for more details
Invalid Ahead of Print date. Ahead of Print files can not have an electronic publication date greater than eighteen (18) months prior to the date of uploading to PubMed.
Cannot replace Article: Replacement file must use the original ArticleIds
Cannot replace Article: ArticleIds do not match. Contact to change ArticleIds.LinkOut
Bibliographic data does not match.
A rejected article or file will not necessarily produce an error message in the loader report. Some common errors that do not produce them are:
The presence of an incomplete entity. All entities must begin with an ampersand (&) and end with a semi-colon (;).
The presence of a stand-alone ampersand (&). When an ampersand is not part of an entity it must be represented by this entity &
The presence of a stand-alone less than (<) or greater than (>) symbol. When less than or greater than symbols are not part of XML tags they must be represented by the entities < and > respectively.
The presence of extraneous spaces and/or line breaks within XML tags.
The file or an article within the file was not formatted in accordance with PubMed specifications. Additional information on the required XML format is available in the PubMed DTD.
No. You may want to designate a special email address (or addresses) for the processing of your automatic Loader Reports.
To create links you must participate in LinkOut. LinkOut is a feature of Entrez where third parties provide information to link specific Entrez records to relevant Web-accessible online resources such as full-text publications, molecular biology databases, consumer health information, research tools, and more. Typically, publishers or full-text providers use LinkOut to provide links from PubMed citations to their full-text journals available on the Web.
See the LinkOut documentation for additional information.
The XML tags are listed below followed by descriptions. Additional information on XML tagged format is available at the following Web sites: W3Schools, XML.com, and OASIS.
This format is required for submission of citation and abstract data to PubMed. Other formats are not accepted. Only journals that are already approved for inclusion in PubMed/MEDLINE should be submitted. See the Data Provider Quick Start for more information about journals indexed for MEDLINE.
If you wish to have non-ASCII characters in your citations you must use standard SGML entity names. It is not possible to keep a separate translation table for each publisher, given the number of possible non-ASCII characters.
Links to the journal Web site, if available, may be submitted using LinkOut.
Section Contents
The following is a glossary of the tags defined in the PubMed DTD. Click on each of the tag names below for more information. You can also view an Example of a Standard XML File.
Data Tags (R = Required, O = Optional O/R = Optional or Required). Tag names are case sensitive. Required tags must be included; optional tags must be included only if the data requested appears in the print or electronic article. Optional or Required tags are dependent on the use of other tags.
The file header is the first line of the XML file that tells us the DTD information. It must appear in the PubMed XML files exactly as:
You will be notified if this header ever changes.
This tag should enclose an entire set of articles in an issue or volume of a given journal.
Each article must be enclosed in these tags. Do not submit data for the following items: book reviews, advertisements, announcements, erratum notices, software and equipment reviews, and papers to appear in forthcoming issues. In addition, do not submit individual citations for abstracts or shortened versions of presentations or papers from conference proceedings unless the full-text of the article is published. In most instances, NLM does create a single citation to cover a group of meeting abstracts or shortened versions of conference proceedings; for example, see PMIDs 18213900, 18062069, and 17956175.
Citation information about the journal issue is contained within this tag in the file.
The publisher name.
The MEDLINE abbreviation for the journal title. If you do not know the abbreviation, see the Journals Database.
The ISSN or ESSN of the journal.
The volume name or number of the journal, including any supplement information, e.g., 12 Suppl 2, 514 (Pt 2), 19 Suppl A, etc. This tag is Required if the Issue tag is not present.
The issue number, e.g., 6 Pt 2, 7-8, etc. This tag is Required if the Volume tag is not present.
The publication date information must be enclosed in the following tags. NOTE: Print or Electronic publication dates should accurately reflect the date format on the article. The PubDate tag includes the PubStatus attribute, which may contain only one of the following values:
ppublish - print-format (default value). With this value the PubDate must contain a Year tag and it could also contain a Month, Season, and/or Day tag. The tags used depend on how the date appears on the article.
epublish - electronic-format. With this value the PubDate must contain a Year, Month and Day tag that gives the exact date the article was publicly available in the final version.
aheadofprint - electronic-format without final citation information; to be followed later by a version with final citation information. With this value the PubDate must contain a Year, Month and Day tag that gives the exact date the article was first made publicly available. This PubStatus value plays an important part in the process of submitting Ahead of Print citations.
If the PubStaus attribute is not present we will default it to ppublish.
The 4-digit year of publication. This tag must only contain a 4-digit year greater than or equal to 1966.
The month of publication. This tag may only contain the numbers 1-12, the month (in English) or the first three letters of the English months. NOTE: The only PubStatus attribute that allows for a dual month in <Month> is ppublish. This tag is Required if the Day tag is present.
The season of publication (do not use if a Month is available); ex: Winter, Spring, Summer, Fall.
The day of publication. This tag may only contain the numbers 1-31.
The identifier of the article that this one replaces. Do not use this tag for new articles. The <Replaces> tag can be used to update an Ahead of Print citation, or to correct an error in citations with [PubMed - as supplied by publisher] status. The Replaces tag includes the IdType attribute, which may contain only one of the following values:
pubmed - PubMed Unique Identifier (PMID) (default value)
pii - controlled publisher identifier
doi - Digital Object Identifier
See our Instructions for Replacement Files for more details.
The article title, in English, if published in English or translated to English in the journal. Do not submit this tag if the published title is not in English or is not translated to English in the journal. See VernacularTitle.
The article title in the original language, if not in English. Used only for Latin based alphabets. See our Instructions for Non-English Languages. This tag frequently contains special characters that need to be represented by SGML entities.
The first page on which the article appears. If an article appears in more than one language with consecutive pagination, pagination should be inclusive of all texts. This tag is Required if ELocationID is not present.
The last page on which the article appears. If an article appears on one page, this is the same as FirstPage. If an article appears on non-consecutive pages this tag should still contain the last page on which the article appears. If an article appears in more than one language in the same issue, pagination should be inclusive of all the texts.
The Electronic Location Identifier is used when an article does not have a FirstPage value OR to include the online location of the article. This tag is Required if FirstPage is not present. The ELocationID tag includes the EIdType attribute, which may contain only one of the following values:
pii - controlled publisher identifier
doi - Digital Object Identifier
See our How do I submit citation and abstract data for Online-only articles? for more details.
The language the article is published in. This should be chosen from the language codes in ISO 639. If unspecified, EN (English) is assumed. If an article appears in more than one language in the same issue, submit multiple language tags listed in the order in which the texts appear in the journal, not in the alphabetical order of the symbols. If one of the languages is English, enter EN first. See our Instructions for Non-English Languages.
The author information must be enclosed in these tags. If a given article has one or more authors, this tag must be submitted. Authors should be listed in the same order as in the article, and author name format should accurately reflect the article. Do not use all upper case letters. This tag is Required if the Author tag is present.
Information about a single Author must begin with this tag.
The Authors’ full first name is required if it appears in the print or online version of the journal. First initial is acceptable if full name is not available. This tag is Required if the LastName tag is present. To represent a Single Personal Author Name use the FirstName EmptyYN attribute value "Y". NOTE: This tag sometimes contains special characters that need to be represented by SGML entities.
The Authors’ full middle name, or initial if the full name is not available. Multiple names are allowed in this tag. NOTE: This tag sometimes contains special characters that need to be represented by SGML entities.
The Authors’ last name. This tag is Required if the FirstName tag is present. NOTE: This tag sometimes contains special characters that need to be represented by SGML entities.
The Author's suffix, if any, e.g. "Jr", "Sr", "II", "IV". Do not include honorific titles, e.g. "M.D.", "Ph.D.".
The name of the authoring committee or organization. CollectiveName can be used instead of or in addition to a personal name. NOTE: This tag sometimes contains special characters that need to be represented by SGML entities.
The institution(s) that the Author is affiliated with. If a given article contains affiliations, this tag must be submitted. Please submit the affiliation for the first author only. If there are multiple affiliations and it cannot be determined which is the first author's affiliation, use the first affiliation. The data should be provided as a simple string within the <Affiliation> </Affiliation> tags. The body of the affiliation should include the following data, if available, separated by commas: division of the institution, institution name, city, state, postal or zip code, country (use USA for the United States) followed by a period, then a space followed by the e-mail address which itself should not end in a period. Do not include the word 'e-mail'. NOTE: This tag sometimes contains special characters that need to be represented by SGML entities.
Group information should be enclosed in these tags. If a given article has one or more Groups, this tag must be submitted. Groups should be listed in the same order as in the printed article, and Group name format should accurately reflect the article. Do not use all upper case letters. This tag is Required if the tag Group is present.
Information about a single Group must begin with this tag.
The name of the authoring committee or organization.
The name of individual members belonging to the authoring committee or organization. The name should be tagged with the FirstName, MiddleName, LastName, Suffix & Affiliation tags.
The Author's full first name is required if it appears in the print or online version of the journal. First initial is acceptable if full name is not available. This tag is Required if the LastName tag is present. To represent a Single Personal Author Name use the FirstName EmptyYN attribute value "Y". NOTE: This tag sometimes contains special characters that need to be represented by SGML entities.
The Authors’ full middle name(s), or initial(s) if the full name(s) not available. NOTE: This tag sometimes contains special characters that need to be represented by SGML entities.
The Authors’ last name. This tag is Required if the FirstName tag is present. NOTE: This tag sometimes contains special characters that need to be represented by SGML entities.
The Authors’ suffix, if any, e.g. "Jr", "Sr", "II", "IV". Do not include honorific titles, e.g. "M.D.", "Ph.D.".
The institution(s) that the Author is affiliated with. NOTE: This tag sometimes contains special characters that need to be represented by SGML entities.
Used to identify the type of article. The only available PublicationTypes are NEWS, LETTER or EDITORIAL. The default value, JOURNAL ARTICLE, will be added to citations if this tag is left blank or an invalid PublicationType is used.
The list of Article Identifiers. This tag is Required if ArticleId is present.
The Article Identifier. The ArticleId tag includes the IdType attribute, which may include only one of the following values for each identifier:
pii - controlled publisher identifier (default value)
doi - Digital Object Identifier
Click here for more information about Article Identifiers.
The history of a publication (e.g., received, accepted, revised, published, ahead of print). Publishers may supply PubDates and PubStatus in History using the PubDate format detailed above. History PubDate is optional; however the PubDate within Journal, outlined above, is required. The History PubDate tag includes the PubStatus attribute, which may contain only one of the following values for each date in the publication history:
received - date manuscript received for review
accepted - accepted for publication
revised - article revised by publisher or author
aheadofprint - published electronically
The <History> tag plays an important part in the process of submitting Replacement Files for Ahead of Print citations.
The articles’ abstract. Include all text as a single ASCII paragraph. Headings of structured abstracts; e.g., OBJECTIVE, DESIGN, etc. should be capitalized and end with a colon, followed by a space before the text. All abstracts should be at least 50 characters in length. The PubMed DTD does not allow text formatting tags such as line breaks, italics, or bold; the only acceptable formatting tags are for superscript (<sup></sup>) or subscript (<inf></inf>). Do not include KEYWORDS or citation information in the Abstract tag. NOTE: This tag sometimes contains special characters that need to be represented by SGML entities.
The Copyright information associated with this article. NOTE: This tag sometimes contains special characters that need to be represented by SGML entities.
This tag contains a list of <Object>s and <Param>s.
The Object tag includes the Type attribute, which may include only one of the following values for each identifier:
The Param tag includes the Name attribute, which may only include the below for the following values for each identifier:
id - Accession Number
Follow the links for more information about each tag.
Here is a list of commonly used SGML entities that can be used in XML files uploaded to PubMed. For each entity listed we have provided the hexadecimal UNICODE value, the translation as it will appear in PubMed, and the meaning. Though they are not listed, we also accept the decimal UNICODE values for the entities listed here. This is not a comprehensive list of accepted characters.
When creating your XML file, please keep in mind the following:
If it is possible to use an ASCII character to represent an entity, please use the ASCII character. For example, general punctuation such as quotation marks, colons, and number signs may be created with keyboard characters. Note that there are three exceptions to this rule: We require you to use an SGML entity instead of ASCII when creating an ampersand (&) [use &], a less than symbol (<) [use <], and a greater than symbol (>) [use >] Where these three occur in tag names or entities, simply use the ASCII characters. For example:
Entities:
ü NOT &uuml;
' NOT &apos;
Tag Names:
<Month> NOT <Month>
Text:
[P < 0.01] NOT [P < 0.01]
We prefer that you use SGML entities (first column), but can accept both decimal and hexadecimal UNICODE character references.
If you wish to use a UNICODE value to represent your character, you must place it in the following format: ampersand (&) followed by a pound sign (#) followed by the UNICODE value followed by a semicolon (;). For example, use ° (hexadecimal value) or ° (decimal value) to represent a degree symbol.
Use <sup> </sup> to indicate superscript, and <inf> </inf> to represent inferior or subscript characters in the <ArticleTitle> and <Abstract> tags.
Diacritics must be represented with SGML entities for the characters to appear correctly in PubMed. This is required for two reasons: first, a user can view diacritics in the XML display of a PubMed citation if their browser is set to translate the UNICODE/UTF-8 character set and second, many licensees of the MEDLINE database world-wide have the ability to display diacritics and therefore value this coding.
You can test your entities with our PubMed Citation XML File Validator. In addition to testing the structure of your XML files, it can determine whether the entities you are using are accepted by our parser.
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
á | á | á | small a, acute accent |
Á | Á | Á | capital A, acute accent |
â | â | â | small a, circumflex accent |
 |  |  | capital A, circumflex accent |
à | à | à | small a, grave accent |
À | À | À | capital A, grave accent |
å | å | å | small a, ring |
Å | Å | Å | capital A, ring |
ã | ã | ã | small a, tilde |
à | à | à | capital A, tilde |
ä | ä | ä | small a, dieresis or umlaut mark |
Ä | Ä | Ä | capital A, dieresis or umlaut mark |
æ | æ | æ | small ae diphthong (ligature) |
Æ | Æ | Æ | capital AE diphthong (ligature) |
ç | ç | ç | small c, cedilla |
Ç | Ç | Ç | capital C, cedilla |
ð | ð | ð | small eth, Icelandic |
Ð | Ð | Ð | capital Eth, Icelandic |
é | é | é | small e, acute accent |
É | É | É | capital E, acute accent |
ê | ê | ê | small e, circumflex accent |
Ê | Ê | Ê | capital E, circumflex accent |
è | è | è | small e, grave accent |
È | È | È | capital E, grave accent |
ë | ë | ë | esmall e, dieresis or umlaut mark |
Ë | Ë | Ë | capital E, dieresis or umlaut mark |
í | í | í | small i, acute accent |
Í | Í | Í | capital I, acute accent |
î | î | î | small i, circumflex accent |
Î | Î | Î | capital I, circumflex accent |
ì | ì | ì | ismall i, grave accent |
Ì | Ì | Ì | capital I, grave accent |
ï | ï | ï | small i, dieresis or umlaut mark |
Ï | Ï | Ï | capital I, dieresis or umlaut mark |
ñ | ñ | ñ | small n, tilde |
Ñ | Ñ | Ñ | capital N, tilde |
ó | ó | ó | small o, acute accent |
Ó | Ó | Ó | capital O, acute accent |
ô | ô | ô | small o, circumflex accent |
Ô | Ô | Ô | capital O, circumflex accent |
ò | ò | ò | small o, grave accent |
Ò | Ò | Ò | capital O, grave accent |
ø | ø | ø | small o, slash |
Ø | Ø | Ø | capital O, slash |
õ | õ | õ | small o, tilde |
Õ | Õ | Õ | capital O, tilde |
ö | ö | ö | small o, dieresis or umlaut mark |
Ö | Ö | Ö | capital O, dieresis or umlaut mark |
ß | ß | ß | small sharp s, German (sz ligature) |
þ | þ | þ | small thorn, Icelandic |
Þ | Þ | Þ | capital THORN, Icelandic |
ú | ú | ú | small u, acute accent |
Ú | Ú | Ú | capital U, acute accent |
û | û | û | small u, circumflex accent |
Û | Û | Û | capital U, circumflex accent |
ù | ù | ù | small u, grave accent |
Ù | Ù | Ù | capital U, grave accent |
ü | ü | ü | small u, dieresis or umlaut mark |
Ü | Ü | Ü | capital U, dieresis or umlaut mark |
ý | ý | ý | small y, acute accent |
Ý | Ý | Ý | capital Y, acute accent |
ÿ | ÿ | ÿ | small y, dieresis or umlaut mark |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
ă | ă | ă | small a, breve |
Ă | Ă | Ă | capital A, breve |
ā | ā | ā | small a, macron |
Ā | Ā | Ā | capital A, macron |
ą | ą | ą | small a, ogonek |
Ą | Ą | Ą | capital A, ogonek |
ć | ć | ć | small c, acute accent |
Ć | Ć | Ć | capital C, acute accent |
č | č | č | small c, caron |
Č | Č | Č | capital C, caron |
ĉ | ĉ | ĉ | small c, circumflex accent |
Ĉ | Ĉ | Ĉ | capital C, circumflex accent |
ċ | ċ | ċ | small c, dot above |
Ċ | Ċ | Ċ | capital C, dot above |
ď | ď | ď | small d, caron |
Ď | Ď | Ď | capital D, caron |
đ | đ | đ | small d, stroke |
Đ | Đ | Đ | capital D, stroke |
ě | ě | ě | small e, caron |
Ě | Ě | Ě | capital E, caron |
ė | ė | ė | small e, dot above |
Ė | Ė | Ė | capital E, dot above |
ē | ē | ē | small e, macron |
Ē | Ē | Ē | capital E, macron |
ę | ę | ę | small e, ogonek |
Ę | Ę | Ę | capital E, ogonek |
ǵ | ǵ | small g, acute accent | |
ğ | ğ | ğ | small g, breve |
Ğ | Ğ | Ğ | capital G, breve |
Ģ | Ģ | Ģ | capital G, cedilla |
ĝ | ĝ | ĝ | small g, circumflex accent |
Ĝ | Ĝ | Ĝ | capital G, circumflex accent |
ġ | ġ | ġ | small g, dot above |
Ġ | Ġ | Ġ | capital G, dot above |
ĥ | ĥ | ĥ | small h, circumflex accent |
Ĥ | Ĥ | Ĥ | capital H, circumflex accent |
ħ | ħ | ħ | small h, stroke |
Ħ | Ħ | Ħ | capital H, stroke |
İ | İ | İ | capital I, dot above |
Ī | Ī | Ī | capital I, macron |
ī | ī | ī | small i, macron |
ij | ij | ij | small ij ligature |
IJ | IJ | IJ | capital IJ ligature |
ı | ı | ı | small i, no dot |
į | į | į | small i, ogonek |
Į | Į | Į | capital I, ogonek |
ĩ | ĩ | ĩ | small i, tilde |
Ĩ | Ĩ | Ĩ | capital I, tilde |
ĵ | ĵ | ĵ | small j, circumflex accent |
Ĵ | Ĵ | Ĵ | capital J, circumflex accent |
ķ | ķ | ķ | small k, cedilla |
Ķ | Ķ | Ķ | capital K, cedilla |
ĸ | ĸ | ĸ | small k, Greenlandic |
ĺ | ĺ | ĺ | small l, acute accent |
Ĺ | Ĺ | Ĺ | capital L, acute accent |
ľ | ľ | ľ | small l, caron |
Ľ | Ľ | Ľ | capital L, caron |
ļ | ļ | ļ | small l, cedilla |
Ļ | Ļ | Ļ | capital L, cedilla |
ŀ | ŀ | ŀ | small l, middle dot |
Ŀ | Ŀ | Ŀ | capital L, middle dot |
ł | ł | ł | small l, stroke |
Ł | Ł | Ł | capital L, stroke |
ń | ń | ń | small n, acute accent |
Ń | Ń | Ń | capital N, acute accent |
ŋ | ŋ | ŋ | small eng, Lapp |
Ŋ | Ŋ | Ŋ | capital ENG, Lapp |
ʼn | ʼn | ʼn | small n, apostrophe |
ň | ň | ň | small n, caron |
Ň | Ň | Ň | capital N, caron |
ņ | ņ | ņ | small n, cedilla |
Ņ | Ņ | Ņ | capital N, cedilla |
ő | ő | ő | small o, double acute accent |
Ő | Ő | Ő | capital O, double acute accent |
Ō | Ō | Ō | capital O, macron |
ō | ō | ō | small o, macron |
œ | œ | œ | small oe ligature |
Œ | Œ | Œ | capital OE ligature |
ŕ | ŕ | ŕ | small r, acute accent |
Ŕ | Ŕ | Ŕ | capital R, acute accent |
ř | ř | ř | small r, caron |
Ř | Ř | Ř | capital R, caron |
ŗ | ŗ | ŗ | small r, cedilla |
Ŗ | Ŗ | Ŗ | capital R, cedilla |
ś | ś | ś | small s, acute accent |
Ś | Ś | Ś | capital S, acute accent |
š | š | š | small s, caron |
Š | Š | Š | capital S, caron |
ş | ş | ş | small s, cedilla |
Ş | Ş | Ş | capital S, cedilla |
ŝ | ŝ | ŝ | small s, circumflex accent |
Ŝ | Ŝ | Ŝ | capital S, circumflex accent |
ť | ť | ť | small t, caron |
Ť | Ť | Ť | capital T, caron |
ţ | ţ | ţ | small t, cedilla |
Ţ | Ţ | Ţ | capital T, cedilla |
ŧ | ŧ | ŧ | small t, stroke |
Ŧ | Ŧ | Ŧ | capital T, stroke |
ŭ | ŭ | ŭ | small u, breve |
Ŭ | Ŭ | Ŭ | capital U, breve |
ű | ű | ű | small u, double acute accent |
Ű | Ű | Ű | capital U, double acute accent |
ū | ū | ū | small u, macron |
Ū | Ū | Ū | capital U, macron |
ų | ų | ų | small u, ogonek |
Ų | Ų | Ų | capital U, ogonek |
ů | ů | ů | small u, ring |
Ů | Ů | Ů | capital U, ring |
ũ | ũ | ũ | small u, tilde |
Ũ | Ũ | Ũ | capital U, tilde |
ŵ | ŵ | ŵ | small w, circumflex accent |
Ŵ | Ŵ | Ŵ | capital W, circumflex accent |
ŷ | ŷ | ŷ | small y, circumflex accent |
Ŷ | Ŷ | Ŷ | capital Y, circumflex accent |
Ÿ | Ÿ | Ÿ | capital Y, dieresis or umlaut mark |
ź | ź | ź | small z, acute accent |
Ź | Ź | Ź | capital Z, acute accent |
ž | ž | ž | small z, caron |
Ž | Ž | Ž | capital Z, caron |
ż | ż | ż | small z, dot above |
Ż | Ż | Ż | capital Z, dot above |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
  |   | em space | |
  |   | en space (1/2-em) | |
  |   | 1/3-em space | |
  |   | 1/4-em space | |
  |   | digit space (width of a number) | |
  |   | punctuation space (width of comma) | |
  |   | thin space (1/6-em) | |
  |   | hair space | |
— | — | - | em dash |
– | – | - | en dash |
‐ | ‐ | - | hyphen (true graphic) |
␣ | ␣ | significant blank symbol | |
… | … | em leader | ellipsis (horizontal) |
‥ | ‥ | .. | double baseline dot (en leader) |
⅓ | ⅓ | (1/3) | fraction one-third |
⅔ | ⅔ | (2/3) | fraction two-thirds |
⅕ | ⅕ | (1/5) | fraction one-fifth |
⅖ | ⅖ | (2/5) | fraction two-fifths |
⅗ | ⅗ | (3/5) | fraction three-fifths |
⅘ | ⅘ | (4/5) | fraction four-fifths |
⅙ | ⅙ | (1/6) | fraction one-sixth |
⅚ | ⅚ | (5/6) | fraction five-sixths |
℅ | ℅ | in-care-of | in-care-of symbol |
█ | █ | full block | full block |
▀ | ▀ | upper half block | upper half block |
▄ | ▄ | lower half block | lower half block |
░ | ░ | 25% shaded block | 25% shaded block |
▒ | ▒ | 50% shaded block | 50% shaded block |
▓ | ▓ | 75% shaded block | 75% shaded block |
▮ | ▮ | histogram marker | histogram marker |
○ | ○ | o | circle, open |
□ | □ | square | square, open |
▭ | ▭ | rectangle | rectangle, open |
▵ | ▵ | triangle up | up triangle, open |
▿ | ▿ | triangle down | down triangle, open |
☆ | ⋆ | small star, filled | star, open |
• | • | * | round bullet, filled |
▪ | ▪ | blacksquare, square, filled | sq bullet, filled |
▴ | ▴ | black triangle | up triangle , filled |
▾ | ▾ | black triangle down | down triangle , filled |
◂ | ◂ | black triangle left | left triangle , filled |
▸ | ▸ | black triangle right | right triangle , filled |
♣ | ♣ | club suit symbol | club suit symbol |
♦ | ♦ | diamond | diamond suit symbol |
♥ | ♡ | heart | heart suit symbol |
♠ | ♠ | spades | spades suit symbol |
✠ | ✠ | maltese cross | maltese cross |
† | † | dagger | dagger |
‡ | ‡ | double dagger | double dagger |
✓ | ✓ | check mark | tick, check mark |
✗ | ✗ | ballot cross | ballot cross |
♯ | ♯ | musical sharp | musical sharp |
♭ | ♭ | musical flat | musical flat |
♂ | ♂ | male symbol | male symbol |
♀ | ♀ | female symbol | female symbol |
☎ | ☎ | telephone symbol | telephone symbol |
⌕ | ⌕ | telephone recorder symbol | telephone recorder symbol |
℗ | ℗ | sound recording copyright sign | sound recording copyright sign |
⁁ | ⁁ | insertion mark | caret (insertion mark) |
‚ | ‚ | ' | rising single quote, left (low) |
„ | „ | " | rising double quote, left (low) |
… | … | em leader | em leader |
” | ” | " | double quote, right (high) |
’ | ’ | ' | single quote, right (high) |
⋮ | ⋮ | vertical ellipsis | vellipvertical ellipsis |
⁃ | ⁃ | rectangle | filled hyphen bullet rectangle |
◊ | ◊ | lozenge | lozenge or total mark |
◃ | ◃ | triangle left | left triangle, open |
▹ | ▹ | triangle right | right triangle, open |
★ | ★ | bigstar | star, filled |
♮ | ♮ | music natural | music natural |
℞ | ℞ | Rx | pharmaceutical prescription (Rx) |
✶ | ✶ | sextile | sextile (6-pointed star) |
⌖ | ⌖ | register mark or target | mark or target |
⌍ | ⌍ | downward left crop mark | left crop mark |
⌌ | ⌌ | downward right crop mark | right crop mark |
⌏ | ⌏ | upward left crop mark | left crop mark |
⌎ | ⌎ | upward right crop mark | right crop mark |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
ℵ | ℵ | aleph | aleph, Hebrew |
∧ | ∧ | wedge | logical and |
&ang90; | ∟ | 90 degree angle | right (90 degree) angle |
∢ | ∢ | angle-spherical | angle-spherical |
≈ | ≈ | approximately | approximate |
∵ | ∵ | because | because |
⊥ | ⊥ | perpendicular | perpendicular |
∩ | ∩ | intersection | intersection |
≅ | ≅ | congruent with | congruent with |
∮ | ∮ | contour integral operator | contour integral operator |
∪ | ∪ | union or logical sum | union or logical sum |
≡ | ≡ | identical with | identical with |
∃ | ∃ | exists | at least one exists |
∀ | ∀ | for all | for all |
ƒ | ƒ | f | function of (italic small f) |
≥ | ≥ | >/= | greater-than-or-equal |
∞ | ∞ | infinity | infinity |
∫ | ∫ | integral | integral operator |
∈ | ∈ | in | set membership |
⟨ | 〈 | < | left angle bracket |
⇐ | ⇐ | <-- | is implied by |
≤ | ≤ | </= | less-than-or-equal |
− | − | - | minus sign |
∓ | ∓ | -/+ | minus-or-plus sign |
∇ | ∇ | nabla | del, Hamilton operator |
≠ | ≠ | not equal | not equal |
∋ | ∋ | contains | contains |
∨ | ∨ | logical or | logical or |
∥ | ∥ | parallel | parallel |
∂ | ∂ | partial differential | partial differential |
‰ | ‰ | per thousand | per thousand |
⊥ | ⊥ | perpendicular | perpendicular |
′ | ′ | ' | prime or minute |
″ | ″ | '' | double prime or second |
∝ | ∝ | proportional, variant | is proportional to |
√ | √ | radical | radical |
⟩ | 〉 | > | right angle bracket |
⇒ | ⇒ | --> | implies |
∼ | ∼ | approximately | similar |
≃ | ≃ | approximately | similar, equals |
□ | □ | square | square |
⊂ | ⊂ | subset | subset or is implied by |
⊆ | ⊆ | subset, dbl equals | subset, equals |
⊃ | ⊃ | superset | superset or implies |
⊇ | ⊇ | superset, dbl equals | superset, equals |
∴ | ∴ | therefore | therefore |
‖ | ‖ | || | double vertical bar |
Å | Å | A | Angstrom (capital A, ring) |
ℬ | ℬ | Bernoulli function | Bernoulli function (script capital B) |
∘ | ∘ | composite function | composite function (small circle) |
¨ | ¨ | dieresis or umlaut mark | |
⃜ | ⃜ | .... | four dots above |
ℋ | ℋ | H | Hamiltonian (script capital H) |
ℒ | ℒ | Lgrangian | Lagrangian (script capital L) |
∗ | ∗ | * | low asterisk |
∉ | ∉ | negated set membership | negated set membership |
ℴ | ℴ | o | order of (script small o) |
ℳ | ℳ | M | physics M-matrix (script capital M) |
⃛ | ⃛ | ... | three dots above |
‴ | ‴ | ''' | triple prime |
≙ | ≙ | wedge | corresponds to (wedge, equals) |
½ | ½ | (1/2) | fraction one-half |
½ | ½ | (1/2) | fraction one-half |
¼ | ¼ | (1/4) | fraction one-quarter |
¾ | ¾ | (3/4) | fraction three-quarters |
⅛ | ⅛ | (1/8) | fraction one-eighth |
⅜ | ⅜ | (3/8) | fraction three-eighths |
⅝ | ⅝ | (5/8) | fraction five-eighths |
⅞ | ⅞ | (7/8) | fraction seven-eighths |
¹ | ¹ | (1) | superscript one |
² | ² | (2) | superscript two |
³ | ³ | (3) | superscript three |
+ | + | + | plus sign |
± | ± | +/- | plus-or-minus sign |
< | < | < | less-than sign |
= | = | = | equals sign |
> | > | > | greater-than sign |
÷ | ÷ | / | divide sign |
× | × | x | multiply sign |
¤ | ¤ | currency | general currency sign |
£ | £ | pound | pound sign |
$ | $ | $ | dollar sign |
¢ | ¢ | cent | cent sign |
¥ | ¥ | yen | yen sign |
# | # | # | number sign |
€ | € | euro | euro sign |
% | % | % | percent sign |
& | & | & | ampersand |
* | * | * | asterisk |
@ | @ | @ | commercial at |
[ | [ | [ | left square bracket |
\ | \ | \\ | reverse solidus |
] | ] | ] | right square bracket |
{ | { | { | left curly bracket |
― | ― | - | horizontal bar |
| | | | | | vertical bar |
} | } | } | right curly bracket |
µ | µ | micro | micro sign |
Ω | Ω | ohm | ohm sign |
° | ° | degrees | degree sign |
º | º | masculine | ordinal indicator, masculine |
ª | ª | feminine | ordinal indicator, feminine |
§ | § | section sign | section sign |
¶ | ¶ | paragraph sign | paragraph sign |
· | · | . | middle dot |
← | ← | <-- | leftward arrow |
→ | → | --> | rightward arrow |
↑ | ↑ | upward arrow | upward arrow |
↓ | ↓ | downward arrow | downward arrow |
© | © | (c) | copyright sign |
® | ® | (R) | registered sign |
™ | ™ | trade mark | trade mark sign |
¦ | ¦ | | | broken (vertical) bar |
¬ | ¬ | not | not sign |
♪ | ♪ | music note | music note (sung text sign) |
! | ! | ! | exclamation mark |
¡ | ¡ | inverted exclamation mark | inverted exclamation mark |
" | " | " | quotation mark |
' | ' | ' | apostrophe |
( | ( | ( | left parenthesis |
) | ) | ) | right parenthesis |
, | , | , | comma |
_ | _ | _ | low line |
‐ | ‐ | - | hyphen |
. | . | . | full stop, period |
/ | / | / | solidus |
: | : | : | colon |
; | ; | ; | semicolon |
? | ? | ? | question mark |
¿ | ¿ | inverted question mark | inverted question mark |
« | « | << | angle quotation mark, left |
» | » | >> | angle quotation mark, right |
‘ | ‘ | ' | single quotation mark, left |
’ | ’ | ' | single quotation mark, right |
“ | “ | " | double quotation mark, left |
” | ” | " | double quotation mark, right |
|   | no break (required) space | |
­ | ­ | - | soft hyphen |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
&agr; | α | alpha | small alpha, Greek |
&Agr; | Α | Alpha | capital Alpha, Greek |
&bgr; | β | beta | small beta, Greek |
&Bgr; | Β | Beta | capital Beta, Greek |
&ggr; | γ | gamma | small gamma, Greek |
&Ggr; | Γ | Gamma | capital Gamma, Greek |
&dgr; | δ | delta | small delta, Greek |
&Dgr; | Δ | Delta | capital Delta, Greek |
&egr; | ε | epsilon | small epsilon, Greek |
&Egr; | Ε | Epsilon | capital Epsilon, Greek |
&zgr; | ζ | zeta | small zeta, Greek |
&Zgr; | Ζ | Zeta | capital Zeta, Greek |
&eegr; | η | eta | small eta, Greek |
&EEgr; | Η | Eta | capital Eta, Greek |
&thgr; | θ | theta | small theta, Greek |
&THgr; | Θ | Theta | capital Theta, Greek |
&igr; | ι | iota | small iota, Greek |
&Igr; | Ι | Iota | capital Iota, Greek |
&kgr; | κ | kappa | small kappa, Greek |
&Kgr; | Κ | Kappa | capital Kappa, Greek |
&lgr; | λ | lambda | small lambda, Greek |
&Lgr; | Λ | Lambda | capital Lambda, Greek |
&mgr; | μ | mu | small mu, Greek |
&Mgr; | Μ | mu | capital Mu, Greek |
&ngr; | ν | nu | small nu, Greek |
&Ngr; | Ν | Nu | capital Nu, Greek |
&xgr; | ξ | xi | small xi, Greek |
&Xgr; | Ξ | Xi | capital Xi, Greek |
&ogr; | ο | omicron | small omicron, Greek |
&Ogr; | Ο | Omicron | capital Omicron, Greek |
&pgr; | π | pi | small pi, Greek |
&Pgr; | Π | Pi | capital Pi, Greek |
&rgr; | ρ | rho | small rho, Greek |
&Rgr; | Ρ | Rho | capital Rho, Greek |
&sgr; | σ | sigma | small sigma, Greek |
&Sgr; | Σ | Sigma | capital Sigma, Greek |
&sfgr; | ς | sigma | final small sigma, Greek |
&tgr; | τ | tau | small tau, Greek |
&Tgr; | Τ | Tau | capital Tau, Greek |
&ugr; | υ | upsilon | small upsilon, Greek |
&Ugr; | Υ | Upsilon | capital Upsilon, Greek |
&phgr; | φ | phi | small phi, Greek |
&PHgr; | Φ | Phi | capital Phi, Greek |
&khgr; | χ | chi | small chi, Greek |
&KHgr; | Χ | Chi | capital Chi, Greek |
&psgr; | ψ | psi | small psi, Greek |
&PSgr; | Ψ | Psi | capital Psi, Greek |
&ohgr; | ω | omega | small omega, Greek |
&OHgr; | Ω | Omega | capital Omega, Greek |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
&aacgr; | ά | alpha | small alpha, accent, Greek |
&Aacgr; | Ά | Alpha | capital Alpha, accent, Greek |
&eacgr; | έ | epsilon | small epsilon, accent, Greek |
&Eacgr; | Έ | Epsilon | capital Epsilon, accent, Greek |
&eeacgr; | ή | eta | small eta, accent, Greek |
&EEacgr; | Ή | Eta | capital Eta, accent, Greek |
&idigr; | ϊ | iota | small iota, dieresis, Greek |
&Idigr; | Ϊ | Iota | capital Iota, dieresis, Greek |
&iacgr; | ί | iota | small iota, accent, Greek |
&Iacgr; | Ί | Iota | capital Iota, accent, Greek |
&idiagr; | ΐ | iota | small iota, dieresis, accent, Greek |
&oacgr; | ό | omicron | small omicron, accent, Greek |
&Oacgr; | Ό | Omicron | capital Omicron, accent, Greek |
&udigr; | ϋ | upsilon | small upsilon, dieresis, Greek |
&Udigr; | Ϋ | Upsilon | capital Upsilon, dieresis, Greek |
&uacgr; | ύ | upsilon | small upsilon, accent, Greek |
&Uacgr; | Ύ | Upsilon | capital Upsilon, accent, Greek |
&udiagr; | ΰ | upsilon | small upsilon, dieresis, accent, Greek |
&ohacgr; | ώ | omega | small omega, accent, Greek |
&OHacgr; | Ώ | Omega | capital Omega, accent, Greek |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
α | α | alpha | small alpha, Greek |
β | β | beta | small beta, Greek |
γ | γ | gamma | small gamma, Greek |
Γ | Γ | Gamma | capital Gamma, Greek |
ϝ | Ϝ | digamma | digamma |
δ | δ | delta | small delta, Greek |
Δ | Δ | Delta | capital Delta, Greek |
ε | ε | epsilon | small epsilon, Greek |
ϵ | ɛ | epsilon | var epsilon |
&epsis; | ε | epsilon | straight epsilon |
ζ | ζ | zeta | small zeta, Greek |
η | η | eta | small eta, Greek |
&thetas; | θ | theta | straight theta |
Θ | Θ | Theta | capital Theta, Greek |
ϑ | ϑ | theta | var theta - curly or open theta |
ι | ι | iota | small iota, Greek |
κ | κ | kappa | small kappa, Greek |
ϰ | ϰ | kappa | var kappa |
λ | λ | lambda | small lambda, Greek |
Λ | Λ | Lambda | capital Lambda, Greek |
μ | μ | mu | small mu, Greek |
ν | ν | nu | small nu, Greek |
ξ | ξ | xi | small xi, Greek |
Ξ | Ξ | Xi | capital Xi, Greek |
π | π | pi | small pi, Greek |
ϖ | ϖ | pi | varpi |
Π | Π | Pi | capital Pi, Greek |
ρ | ρ | rho | small rho, Greek |
ϱ | ϱ | rho | var rho |
σ | σ | sigma | small sigma, Greek |
Σ | Σ | Sigma | capital Sigma, Greek |
ς | ς | sigma | var sigma |
τ | τ | tau | small tau, Greek |
υ | υ | upsilon | small upsilon, Greek |
ϒ | ϒ | Upsilon | capital Upsilon, Greek |
&phis; | φ | phi | straight phi |
Φ | Φ | Phi | capital Phi, Greek |
ϕ | ϕ | phi | var phi - curly or open phi |
χ | χ | chi | small chi, Greek |
ψ | ψ | psi | small psi, Greek |
Ψ | Ψ | Psi | capital Psi, Greek |
ω | ω | omega | small omega, Greek |
Ω | Ω | Omega | capital Omega, Greek |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
&b.alpha; | α | alpha | small alpha, Greek |
&b.beta; | β | beta | small beta, Greek |
&b.gamma; | γ | gamma | small gamma, Greek |
&b.Gamma; | Γ | Gamma | capital Gamma, Greek |
&b.gammad; | ϝ | digamma | digamma |
&b.delta; | δ | delta | small delta, Greek |
&b.Delta; | Δ | Delta | capital Delta, Greek |
&b.epsi; | ε | epsilon | small epsilon, Greek |
&b.epsiv; | ɛ | epsilon | var epsilon |
&b.epsis; | ε | epsilon | straight epsilon |
&b.zeta; | ζ | zeta | small zeta, Greek |
&b.eta; | η | eta | small eta, Greek |
&b.thetas; | θ | theta | straight theta |
&b.Theta; | Θ | Theta | capital Theta, Greek |
&b.thetav; | ϑ | theta | var theta - curly or open theta |
&b.iota; | ι | iota | small iota, Greek |
&b.kappa; | κ | kappa | small kappa, Greek |
&b.kappav; | ϰ | kappa | var kappa |
&b.lambda; | λ | lambda | small lambda, Greek |
&b.Lambda; | Λ | Lambda | capital Lambda, Greek |
&b.mu; | μ | mu | small mu, Greek |
&b.nu; | ν | nu | small nu, Greek |
&b.xi; | ξ | xi | small xi, Greek |
&b.Xi; | Ξ | Xi | capital Xi, Greek |
&b.pi; | π | pi | small pi, Greek |
&b.Pi; | Π | Pi | capital Pi, Greek |
&b.piv; | ϖ | pi | var pi |
&b.rho; | ρ | rho | small rho, Greek |
&b.rhov; | ϱ | rho | var rho |
&b.sigma; | σ | sigma | small sigma, Greek |
&b.Sigma; | Σ | Sigma | capital Sigma, Greek |
&b.sigmav; | ς | sigma | var sigma |
&b.tau; | τ | tau | small tau, Greek |
&b.upsi; | υ | upsilon | small upsilon, Greek |
&b.Upsi; | ϒ | Upsilon | capital Upsilon, Greek |
&b.phis; | φ | phi | straight phi |
&b.Phi; | Φ | Phi | capital Phi, Greek |
&b.phiv; | ϕ | phi | var phi - curly or open phi |
&b.chi; | χ | chi | small chi, Greek |
&b.psi; | ψ | psi | small psi, Greek |
&b.Psi; | Ψ | Psi | capital Psi, Greek |
&b.omega; | ω | omega | small omega, Greek |
&b.Omega; | Ω | Omega | capital Omega, Greek |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
⌉ | ⌉ | right ceiling | right ceiling |
⌋ | ⌋ | right floor | right floor |
⦔ | ⦔ | right paren, gt | right paren, gt |
⌝ | ⌝ | upper right corner | upper right corner |
⌟ | ⌟ | downward right corner | downward right corner |
⌈ | ⌈ | left ceiling | left ceiling |
⌊ | ⌊ | left floor | left floor |
⌜ | ⌜ | upper left corner | upper left corner |
⌞ | ⌞ | downward left corner | downward left corner |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
⪈ | ≩ | greater, not dbl equals | greater, not equals |
≩ | ≩ | greater, not dbl equals | greater, not double equals |
⋧ | ⋧ | greater, not similar | greater, not similar |
⪉ | ⪉ | less, not approximate | less, not approximate |
≨ | ≨ | less, not double equals | less, not double equals |
⪇ | ≨ | less, not double equals | less, not equals |
⋦ | ⋦ | less, not similar | less, not similar |
≉ | ≉ | not approximate | not approximate |
≇ | ≇ | not congruent with | not congruent with |
≢ | ≢ | not identical with | not identical with |
≧̸ | ≱ | not greater, double equals | not greater, double equals |
≱ | ≱ | not greater-than-or-equal | not greater-than-or-equal |
⩾̸ | ≱ | not greater, double equals | not gt-or-eq, slanted |
≯ | ≯ | not greater-than | not greater-than |
≰ | ≰ | not less-than-or-equal | not less-than-or-equal |
≦̸ | ≰ | not less, double equals | not less, double equals |
⩽̸ | ≰ | not less, double equals | not less-or-eq, slant |
≮ | ≮ | not less-than | not less-than |
⋪ | ⋪ | not left triangle | not left triangle |
⋬ | ⋬ | not l tri, eq | not left tri, equals |
∤ | ∤ | nmid | nmid |
∦ | ∦ | not parallel | not parallel |
⊀ | ⊀ | not precedes | not precedes |
⋫ | ⋫ | not rt triangle | not right triangle |
⋭ | ⋭ | not r tri, eq | not right tri, equals |
⊁ | ⊁ | not succeeds | not succeeds |
≁ | ≁ | not similar | not similar |
≄ | ≄ | not similar, equals | not similar, equals |
∤ | ∤ | nshortmid | not short mid |
⊄ | ⊄ | not subset | not subset |
⊈ | ⊈ | not subset, dbl eq | not subset, equals |
⫅̸ | ⊈ | not subset, dbl eq | not subset, double equals |
⊅ | ⊅ | not superset | not superset |
⫆̸ | ⊉ | not superset, equals | not superset, double equals |
⊉ | ⊉ | not superset, equals | not superset, equals |
⊬ | ⊬ | not vertical, dash | not vertical, dash |
⊭ | ⊭ | not vertical, dbl dash | not vertical, double dash |
⊯ | ⊯ | not dbl vert, dbl dash | not double vert, double dash |
⊮ | ⊮ | not dbl vertical, dash | not double vertical, dash |
⪹ | ⋨ | precedes, not approx | precedes, not approx |
⪵ | ⪵ | precedes, not dbl eq | precedes, not double equals |
⋨ | ⋨ | precedes, not approx | precedes, not similar |
⪺ | ⋩ | succeeds, not approx | succeeds, not approx |
⪶ | ⪶ | succeeds, not dbl eq | succeeds, not double equals |
⋩ | ⋩ | succeeds, not approx | succeeds, not similar |
⊊ | ⊊ | subset, not equals | subset, not equals |
⫋ | ⊊ | subset, not equals | subset, not double equals |
⊋ | ⊋ | superset, not dbl eq | superset, not equals |
⫌ | ⊋ | superset, not dbl eq | superset, not double equals |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
↶ | ↶ | left curved arrow | left curved arrow |
↷ | ↷ | right curved arrow | right curved arrow |
⇓ | ⇓ | down double arrow | down double arrow |
&darr2; | ⇊ | two down arrows | two down arrows |
⇃ | ⇃ | down harpoon-left | down harpoon-left |
⇂ | ⇂ | down harpoon-right | down harpoon-right |
⇚ | ⇚ | left triple arrow | left triple arrow |
↞ | ↞ | two head left arrow | two head left arrow |
&larr2; | ⇇ | two left arrows | two left arrows |
↩ | ↩ | left arrow-hooked | left arrow-hooked |
↫ | ↫ | left arrow-looped | left arrow-looped |
↢ | ↢ | left arrow-tailed | left arrow-tailed |
↽ | ↽ | left harpoon-down | left harpoon-down |
↼ | ↼ | left harpoon-up | left harpoon-up |
⇔ | ⇔ | <--> | left&right double arrow |
↔ | ↔ | <--> | left&right arrow |
&lrarr2; | ⇆ | left arrow over right arrow | left arrow over right arrow |
&rlarr2; | ⇄ | right arrow over left arrow | right arrow over left arrow |
↭ | ↭ | left and right squig arrow | left&right arrow-wavy |
&rlhar2; | ⇌ | right harpoon over left harpoon | right harp over left |
&lrhar2; | ⇋ | left harpoon over right harpoon | left harp over right |
↰ | ↰ | Lsh | Lsh |
↦ | ↦ | mapsto | maps to |
⊸ | ⊸ | multimap | multi map |
↗ | ↗ | NE pointing arrow | near pointing arrow |
⇍ | ⇍ | not implied by | not Left arrow; not implied by |
↚ | ↚ | not left arrow | not left arrow |
⇎ | ⇎ | not l&r dbl arr | not left&right double arrow |
↮ | ↮ | not l&r arrow | not left&right arrow |
↛ | ↛ | not right arrow | not right arrow |
⇏ | ⇏ | not implies | not implies |
↖ | ↖ | NW pointing arrow | NW pointing arrow |
↺ | ↺ | left arrow in circle | left arrow in circle |
↻ | ↻ | right arrow in circle | right arrow in circle |
⇛ | ⇛ | right triple arrow | right triple arrow |
↠ | ↠ | two head right arrow | two head rightarrow |
&rarr2; | ⇉ | two right arrows | two right arrows |
↪ | ↪ | right arrow-hooked | right arrow-hooked |
↬ | ↬ | right arrow-looped | right arrow-looped |
↣ | ↣ | right arrow-tailed | right arrow-tailed |
↝ | ⇝ | right arrow-wavy | right arrow-wavy |
⇁ | ⇁ | right harpoon-down | right harpoon-down |
⇀ | ⇀ | right harpoon-up | right harpoon-up |
↱ | ↱ | Rsh | Rsh |
&drarr; | ↘ | SE pointing arrow | downward right arrow |
&dlarr; | ↙ | SW pointing arrow | downward left arrow |
⇑ | ⇑ | up dbl arrow | up double arrow |
&uarr2; | ⇈ | two up arrows | two up arrows |
⇕ | ⇕ | up and down dbl arrow | up&down double arrow |
↕ | ↕ | up and down arrow | up&down arrow |
↿ | ↿ | up harpoon-left | up harpoon-left |
↾ | ↾ | up harp-right | up harp-right |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
⌆ | ⌆ | log and, dbl bar | logical and, double bar |
⌅ | ⊼ | logical and, bar above | logical and, bar above |
⋒ | ⋒ | dbl intersection | double intersection |
⋓ | ⋓ | dbl union | double union |
⋎ | ⋎ | curly logical or | curly logical or |
⋏ | ⋏ | curly logical and | curly logical and |
⋄ | ⋄ | open diamond | open diamond |
⋇ | ⋇ | division on times | division on times |
⊺ | ⊺ | intercal | intercal |
⋋ | ⋋ | leftthreetimes | left three times |
⋉ | ⋉ | times sign, left closed | times sign, left closed |
⊟ | ⊟ | minus sign in box | minus sign in box |
⊛ | ⊛ | asterisk in circle | asterisk in circle |
⊚ | ⊚ | open dot in circle | open dot in circle |
⊝ | ⊝ | hyphen in circle | hyphen in circle |
⊙ | ⊙ | middle dot in circle | middle dot in circle |
⊖ | ⊖ | minus sign in circle | minus sign in circle |
⊕ | ⊕ | plus sign in circle | plus sign in circle |
⊘ | ⊘ | solidus in circle | solidus in circle |
⊗ | ⊗ | multiply sign in circle | multiply sign in circle |
⊞ | ⊞ | plus sign in box | plus sign in box |
∔ | ∔ | plus sign, dot above | plus sign, dot above |
⋌ | ⋌ | rightthreetimes | right threetimes |
⋊ | ⋊ | times sign, right closed | times sign, right closed |
⋅ | · | . | small middle dot |
⊡ | ⊡ | small dot in box | small dot in box |
∖ | ∖ | \\ | reverse solidus |
⊓ | ⊓ | square intersection | square intersection |
⊔ | ⊔ | square union | square union |
⋆ | ⋆ | small star, filled | small star, filled |
⊠ | ⊠ | multiply sign in box | multiply sign in box |
⊤ | ⊤ | inverted perpendicular | inverted perpendicular |
⊎ | ⊎ | plus sign in union | plus sign in union |
≀ | ≀ | wreath product | wreath product |
◯ | ◯ | large circle | large circle |
▽ | ▽ | big dn tri, open | big triangle down open |
△ | △ | big up tri, open | big triangle up open |
∐ | ∐ | coproduct operator | coproduct operator |
∏ | ∏ | product operator | product operator |
∑ | ∑ | summation operator | summation operator |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
∠ | ∟ | 90 degree angle | angle |
∡ | ∡ | measured angle | angle-measured |
ℶ | ℶ | beth | beth, Hebrew |
‵ | ‵ | ' | reverse prime |
∁ | ∁ | complement | complement sign |
ℸ | ℸ | daleth | daleth, Hebrew |
ℓ | ℓ | l | cursive small l |
ℷ | ℷ | gimel | gimel, Hebrew |
ℑ | ℑ | imaginary | imaginary |
ı | ı | i | small i, no dot |
∄ | ∄ | negated exists | negated exists |
Ⓢ | Ⓢ | S in circle | capital S in circle |
ℏ | ℏ | variant Planck's over 2pi | Planck's over 2pi |
ℜ | ℜ | Re | Re - real |
&sbsol; | \ | \\ | short reverse solidus |
&vprime; | ′ | ' | prime, variant |
℘ | ℘ | Weierstrass p | Weierstrass p |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
≊ | ≊ | approximate, equals | approximate, equals |
≈ | ≍ | asymptotically equal to | asymptotically equal to |
≌ | ≌ | reverse congruent | reverse congruent |
⋈ | ⋈ | bowtie R | bowtie |
∽ | ∽ | reverse similar | reverse similar |
⋍ | ⋍ | reverse similar | reverse similar, equals |
≎ | ≎ | bumpy equals | bumpy equals |
≏ | ≏ | bumpy equals, equals | bumpy equals, equals |
≗ | ≗ | o= | circle, equals |
≔ | ≔ | := | colon, equals |
⋞ | ⋞ | equal to or precedes | curly equals, precedes |
⋟ | ⋟ | equal to or succeeds | curly equals, succeeds |
&cupre; | ≼ | precedes or equal to | curly precedes, equals |
⊣ | ⊣ | dash, vertical | dash, vertical |
≖ | ≖ | circle on equals sign | circle on equals sign |
≕ | ≕ | =: | equals, colon |
≑ | ≑ | =... | equals, even dots |
≐ | ≐ | equals, single dot above | equals, single dot above |
≒ | ≒ | falling dots | equals, falling dots |
⪖ | ⋝ | =/> | equal-or-greater, slanted |
⪕ | ⋜ | =/< | equals-or-less, slanted |
≓ | ≓ | rising dots | equals, rising dots |
⋔ | ⋔ | pitchfork | pitch fork |
⌢ | ⌢ | down curve | down curve |
⪆ | ≳ | greater, similar | greater, approximate |
&gsdot; | ⋗ | greater than, with dot | greater than, single dot |
≧ | ≧ | >== | greater, double equals |
⋛ | ⋛ | >=< | greater, equals, less |
⪌ | ⋛ | >=< | gt, double equals, less |
⋙ | ⋙ | >>> | triple gtr-than |
≷ | ≷ | >< | greater, less |
≳ | ≳ | greater, similar | greater, similar |
≫ | ≫ | >> | double greater-than sign |
⪅ | ≲ | less, similar | less, approximate |
&ldot; | ⋖ | less than, with dot | less than, with dot |
≦ | ≦ | <== | less, double equals |
⪋ | ⋚ | <=> | less, double equals, greater |
⋚ | ⋚ | <=> | less, equals, greater |
≶ | ≶ | <> | less, greater |
⋘ | ⋘ | <<< | triple less-than |
≲ | ≲ | less, similar | less, similar |
≪ | ≪ | << | double less-than sign |
⊴ | ⊴ | left triangle, eq | left triangle, equals |
∣ | ∣ | mid R: | mid |
⊧ | ⊧ | models R: | models |
≺ | ≺ | equal to or precedes | precedes |
⪷ | ≾ | similar | precedes, approximate |
≾ | ≾ | similar | precedes, similar |
⊵ | ⊵ | right tri, eq | right triangle , equals |
&samalg; | ∐ | coproduct operator | small amalg |
≻ | ≻ | equal to or succeeds | succeeds |
⪸ | ≿ | succeeds, similar | succeeds, approximate |
≽ | ≽ | succeeds, equals | succeeds, curly equals |
⪰ | ≽ | succeeds, equals | succeeds, equals |
≿ | ≿ | succeeds, similar | succeeds, similar |
⌢ | ⌢ | down curve | small down curve |
∣ | ∣ | shortmid R: | short mid |
⌣ | ⌣ | up curve | smile up curve |
⊏ | ⊏ | square subset | square subset |
⊑ | ⊑ | square subset, equals | square subset, equals |
⊐ | ⊐ | square superset | square superset |
⊒ | ⊒ | square superset, eq | square superset, equals |
⌣ | ⌣ | up curve | small up curve |
⋐ | ⋐ | double subset | double subset |
⫅ | ⊆ | subset, dbl equals | subset, double equals |
⋑ | ⋑ | dbl superset | double superset |
⫆ | ⊇ | superset, dbl equals | superset, double equals |
≈ |  | thick approximate | thick approximate |
∼ |  | thick similar | thick similar |
≜ | ≜ | triangle, equals | triangle, equals |
≬ | ≬ | between | between |
⊢ | ⊢ | vertical, dash | vertical, dash |
⊩ | ⊩ | dbl vertical, dash | double vertical, dash |
⊨ | ⊨ | vertical, dbl dash | vertical, double dash |
⊻ | ⊻ | logical or, bar below | logical or, bar below |
⊲ | ⊲ | left tri, open, var | left triangle , open, var |
∝ | ∝ | proportional, variant | proportional, variant |
⊳ | ⊳ | right tri, open, var | right triangle , open, var |
⊪ | ⊪ | triple vertical, dash | triple vertical, dash |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
а | а | small a, Cyrillic | small a, Cyrillic |
А | А | capital A, Cyrillic | capital A, Cyrillic |
б | б | small be, Cyrillic | small be, Cyrillic |
Б | Б | capital BE, Cyrillic | capital BE, Cyrillic |
в | в | small ve, Cyrillic | small ve, Cyrillic |
В | В | capital VE, Cyrillic | capital VE, Cyrillic |
г | г | small ghe, Cyrillic | small ghe, Cyrillic |
Г | Г | capital GHE, Cyrillic | capital GHE, Cyrillic |
д | д | small de, Cyrillic | small de, Cyrillic |
Д | Д | capital DE, Cyrillic | capital DE, Cyrillic |
е | е | small ie, Cyrillic | small ie, Cyrillic |
Е | Е | capital IE, Cyrillic | capital IE, Cyrillic |
ё | ё | small io, Russian | small io, Russian |
Ё | Ё | capital IO, Russian | capital IO, Russian |
ж | ж | small zhe, Cyrillic | small zhe, Cyrillic |
Ж | Ж | capital ZHE, Cyrillic | capital ZHE, Cyrillic |
з | з | small ze, Cyrillic | small ze, Cyrillic |
З | З | capital ZE, Cyrillic | capital ZE, Cyrillic |
и | и | small i, Cyrillic | small i, Cyrillic |
И | И | capital I, Cyrillic | capital I, Cyrillic |
й | й | small short i, Cyrillic | small short i, Cyrillic |
Й | Й | capital short I, Cyrillic | capital short I, Cyrillic |
к | к | small ka, Cyrillic | small ka, Cyrillic |
К | К | capital KA, Cyrillic | capital KA, Cyrillic |
л | л | small el, Cyrillic | small el, Cyrillic |
Л | Л | capital EL, Cyrillic | capital EL, Cyrillic |
м | м | small em, Cyrillic | small em, Cyrillic |
М | М | capital EM, Cyrillic | capital EM, Cyrillic |
н | н | small en, Cyrillic | small en, Cyrillic |
Н | Н | capital EN, Cyrillic | capital EN, Cyrillic |
о | о | small o, Cyrillic | small o, Cyrillic |
О | О | capital O, Cyrillic | capital O, Cyrillic |
п | п | small pe, Cyrillic | small pe, Cyrillic |
П | П | capital PE, Cyrillic | capital PE, Cyrillic |
р | р | small er, Cyrillic | small er, Cyrillic |
Р | Р | capital ER, Cyrillic | capital ER, Cyrillic |
с | с | small es, Cyrillic | small es, Cyrillic |
С | С | capital ES, Cyrillic | capital ES, Cyrillic |
т | т | small te, Cyrillic | small te, Cyrillic |
Т | Т | capital TE, Cyrillic | capital TE, Cyrillic |
у | у | small u, Cyrillic | small u, Cyrillic |
У | У | capital U, Cyrillic | capital U, Cyrillic |
ф | ф | small ef, Cyrillic | small ef, Cyrillic |
Ф | Ф | capital EF, Cyrillic | capital EF, Cyrillic |
х | х | small ha, Cyrillic | small ha, Cyrillic |
Х | Х | capital HA, Cyrillic | capital HA, Cyrillic |
ц | ц | small tse, Cyrillic | small tse, Cyrillic |
Ц | Ц | capital TSE, Cyrillic | capital TSE, Cyrillic |
ч | ч | small che, Cyrillic | small che, Cyrillic |
Ч | Ч | capital CHE, Cyrillic | capital CHE, Cyrillic |
ш | ш | small sha, Cyrillic | small sha, Cyrillic |
Ш | Ш | capital SHA, Cyrillic | capital SHA, Cyrillic |
щ | щ | small shcha, Cyrillic | small shcha, Cyrillic |
Щ | Щ | capital SHCHA, Cyrillic | capital SHCHA, Cyrillic |
ъ | ъ | small hard sign, Cyrillic | small hard sign, Cyrillic |
Ъ | Ъ | capital HARD sign, Cyrillic | capital HARD sign, Cyrillic |
ы | ы | small yeru, Cyrillic | small yeru, Cyrillic |
Ы | Ы | capital YERU, Cyrillic | capital YERU, Cyrillic |
ь | ь | small soft sign, Cyrillic | small soft sign, Cyrillic |
Ь | Ь | capital SOFT sign, Cyrillic | capital SOFT sign, Cyrillic |
э | э | small e, Cyrillic | small e, Cyrillic |
Э | Э | capital E, Cyrillic | capital E, Cyrillic |
ю | ю | small yu, Cyrillic | small yu, Cyrillic |
Ю | Ю | capital YU, Cyrillic | capital YU, Cyrillic |
я | я | small ya, Cyrillic | small ya, Cyrillic |
Я | Я | capital YA, Cyrillic | capital YA, Cyrillic |
№ | № | numero sign | numero sign |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
ђ | ђ | small dje, Serbian | small dje, Serbian |
Ђ | Ђ | capital DJE, Serbian | capital DJE, Serbian |
ѓ | ѓ | small gje, Macedonian | small gje, Macedonian |
Ѓ | Ѓ | capital GJE Macedonian | capital GJE Macedonian |
є | є | small je, Ukrainian | small je, Ukrainian |
Є | Є | capital JE, Ukrainian | capital JE, Ukrainian |
ѕ | ѕ | small dse, Macedonian | small dse, Macedonian |
Ѕ | Ѕ | capital DSE, Macedonian | capital DSE, Macedonian |
і | і | small i, Ukrainian | small i, Ukrainian |
І | І | capital I, Ukrainian | capital I, Ukrainian |
ї | ї | small yi, Ukrainian | small yi, Ukrainian |
Ї | Ї | capital YI, Ukrainian | capital YI, Ukrainian |
ј | ј | small je, Serbian | small je, Serbian |
Ј | Ј | capital JE, Serbian | capital JE, Serbian |
љ | љ | small lje, Serbian | small lje, Serbian |
Љ | Љ | capital LJE, Serbian | capital LJE, Serbian |
њ | њ | small nje, Serbian | small nje, Serbian |
Њ | Њ | capital NJE, Serbian | capital NJE, Serbian |
ћ | ћ | small tshe, Serbian | small tshe, Serbian |
Ћ | Ћ | capital TSHE, Serbian | capital TSHE, Serbian |
ќ | ќ | small kje Macedonian | small kje Macedonian |
Ќ | Ќ | capital KJE, Macedonian | capital KJE, Macedonian |
ў | ў | small u, Byelorussian | small u, Byelorussian |
Ў | Ў | capital U, Byelorussian | capital U, Byelorussian |
џ | џ | small dze, Serbian | small dze, Serbian |
Џ | Џ | capital dze, Serbian | capital dze, Serbian |
Entity | Unicode | PubMed Displays as | Meaning |
---|---|---|---|
─ | ─ | horizontal line | horizontal line |
│ | │ | vertical line | vertical line |
└ | └ | upper right quadrant | upper right quadrant |
┘ | ┘ | upper left quadrant | upper left quadrant |
┐ | ┐ | lower left quadrant | lower left quadrant |
┌ | ┌ | lower right quadrant | lower right quadrant |
├ | ├ | upper and lower right quadrants | upper and lower right quadrants |
┴ | ┴ | upper left and right quadrants | upper left and right quadrants |
┤ | ┤ | upper and lower left quadrants | upper and lower left quadrants |
┬ | ┬ | lower left and right quadrants | lower left and right quadrants |
┼ | ┼ | all four quadrants | all four quadrants |
╞ | ╞ | upper and lower right quadrants | upper and lower right quadrants |
╨ | ╨ | upper left and right quadrants | upper left and right quadrants |
╡ | ╡ | upper and lower left quadrants | upper and lower left quadrants |
╥ | ╥ | lower left and right quadrants | lower left and right quadrants |
╪ | ╪ | all four quadrants | all four quadrants |
═ | ═ | horizontal line | horizontal line |
║ | ║ | vertical line | vertical line |
╚ | ╚ | upper right quadrant | upper right quadrant |
╝ | ╝ | upper left quadrant | upper left quadrant |
╗ | ╗ | lower left quadrant | lower left quadrant |
╔ | ╔ | lower right quadrant | lower right quadrant |
╠ | ╠ | upper and lower right quadrants | upper and lower right quadrants |
╩ | ╩ | upper left and right quadrants | upper left and right quadrants |
╣ | ╣ | upper and lower left quadrants | upper and lower left quadrants |
╦ | ╦ | lower left and right quadrants | lower left and right quadrants |
╬ | ╬ | all four quadrants | all four quadrants |
╟ | ╟ | upper and lower right quadrants | upper and lower right quadrants |
╧ | ╧ | upper left and right quadrants | upper left and right quadrants |
╢ | ╢ | upper and lower left quadrants | upper and lower left quadrants |
╤ | ╤ | lower left and right quadrants | lower left and right quadrants |
╫ | ╫ | all four quadrants | all four quadrants |
╘ | ╘ | upper right quadrant | upper right quadrant |
╜ | ╜ | upper left quadrant | upper left quadrant |
╕ | ╕ | lower left quadrant | lower left quadrant |
╓ | ╓ | lower right quadrant | lower right quadrant |
╙ | ╙ | upper right quadrant | upper right quadrant |
╛ | ╛ | upper left quadrant | upper left quadrant |
╖ | ╖ | lower left quadrant | lower left quadrant |
╒ | ╒ | lower right quadrant | lower right quadrant |
An error found in a PubMed record can be corrected, but whether the correction can be made by the publisher depends on the publication status of the citation in question and whether the error also occurred in the original version of the article (print or online).
Publishers can correct errors ONLY if the citation has the publication status [PubMed - as supplied by publisher]. Citations with the publication status [PubMed - in process], [PubMed - Indexed for MEDLINE], [PubMed] and [PubMed - OLDMEDLINE] can ONLY be corrected by NLM staff.
Errors that also appeared in the original version of the article cannot be corrected until an Erratum is issued in an upcoming issue of the journal. Please see NLM's Errata, Retraction, Duplicate Publication, and Comment Policy Fact Sheet for more information.
All PubMed citations display a Publication Status Tag. There are five possible Publication Status Tags:
Citations in this stage appear exactly as the publisher provided them. Errors can be corrected by sending a revised file using the <Replaces> tags. Please see our Instructions for Replacement Files for details.
Citations in this stage are in the process of data review at the NLM. Errors cannot be corrected with a Replacement File. If the error in the citation is correct in the print/online version of the article, it will likely be revised by NLM Indexers during this stage. Please allow a few weeks for the completed citation to appear in the database.
Citations in this stage have moved completely through the indexing process at NLM. Citation data has been quality assured and MESH subject headings have been added to the records. Any errors found in citations at this stage should be reported to NLM's Customer Service department at custserv@nlm.nih.gov. Please use the Request for Correction format below when composing your message to Customer Service.
See [PubMed - Indexed for MEDLINE] for correction procedures
See [PubMed - Indexed for MEDLINE] for correction procedures
See the PubMed Help PubMed Citation Status Subsets page for more information.
Please read the LinkOut Help Additional Information about Linking page for instructions on how to edit or add ArticleIds (pii or doi) for the purpose of linking from PubMed to the full-text article.
Please use this format when submitting a request for correction to custserv@nlm.nih.gov
Subject: REQUEST FOR CORRECTION
PMID:
TITLE:
ISSN:
VOLUME:
ISSUE:
URL: (if any)
PUBLISHER: Publisher for this journal
PROVIDER: XML data provider for this journal
TEXT: Current text
CORRECTION: Revised text
NOTE: Additional notes
Here is an example of a non-English language citation:
The [brackets] around the article title and the text "French" indicate the full-text of the article is in a language other than English. The French article title can be viewed by selecting the XML display for this citation in PubMed.
Publishers submitting files for articles published in non-English languages often have specific questions about how to construct their XML files. Here are some guidelines for the submission of non-English articles. We also have a sample XML file for this type of article.
The <Language> tag should contain the two-letter code for the language the article is in. If unspecified, EN (English) is the default code. See our list of Language Tag Codes, a subset of the ISO 639 standard for language codes.
The <ArticleTitle> tag should contain the article title, in English, if published in English or translated to English in the journal. Do not fill this tag if the published title is not in English or is not translated to English in the journal.
The <VernacularTitle> should contain the article title in the original language, if not in English. It is used only for Latin based alphabets; articles in non-Latin alphabets should leave this tag blank.
When constructing XML files for citations published in non-English languages it is important to use the final/published version of the article as the authority on what citation data should be included in the file. If English translations for titles or abstracts are not in the article, do not include them. ArticleTitle and Author tags left blank in your XML file submission will be filled by the appropriate NLM staff when the citations are indexed for MEDLINE.
Author Names and Vernacular Titles frequently contain special characters that need to be represented by SGML entities in the XML file.
If the full text of an article appears in more than one language in the same issue, submit multiple language tags listed in the order in which the texts appear in the journal, not in the alphabetical order of the symbols. If one of the languages is English, enter EN first. For example, an article which appears full-text in both Chinese and English should be coded as:
If the article contains... | Your XML file should contain... |
---|---|
a title in Japanese characters and a title in English | the English title in the <ArticleTitle> tags and empty <VernacularTitle> tags |
author names in Chinese characters only | empty <Author> tags |
Russian transliterated names and affiliations | transliterated names in the <Author> tags and affiliations in the <Affiliation> tags; however, you should check the transliterations against NLM's System of Transliteration and make changes if necessary. |
an English abstract, but article title and author names in Cyrillic only | the English abstract and transliterated Cyrillic in <ArticleTitle> and <Author> tags. |
Publishers who are authorized to submit XML data to PubMed have the option of submitting citations prior to their publication in final or print format. This option is used for those publications in which the date of an article's electronic publishing predates publication in the journal issue or volume. When articles are first made available on a Web site (publishers’ or other), the publisher or provider sends the same citation data made available to the public for inclusion in PubMed.
Often these types of citations contain partial citation information--for example, they might contain an article title and full abstract, but not contain a volume, issue, or page number. This information is expected to be filled in by a Replaces XML file after the issue or volume has been finalized or printed. These incomplete citation records hold an [Epub ahead of print] status until updated data is sent to PubMed. See our Ahead of Print File Example and the Replacement File that updates it.
IMPORTANT: The Ahead of Print (AOP) mechanism must not be used for an article if its eventual publication is uncertain. In the rare case where an AOP citation is retracted, the citation information should remain on the publisher Web site. See our Ahead of Print Withdrawn policy
Here's an example of an AOP citation in PubMed:
The notation [Epub ahead of print] labels this citation as incomplete. Note it does not display a volume number or issue number or page numbers, only a publication date.
Here's the same citation after being updated with a Replacement File:
Construct an XML file according to the PubMed DTD, including all available citation information.
If Volume, Issue, FirstPage and LastPage are not known, these tags should be blank.
Add the electronic publication date to the <PubDate> tag, along with the PubStatus="aheadofprint" attribute. The electronic publication date must be an exact date, one that includes completed tags for Year, Month and Day. Articles using the "aheadofprint" PubStatus attribute that do not contain exact publication dates will be rejected from loading to PubMed. NOTE: The electronic publication date cannot be greater than 18 months prior to the month of uploading to PubMed. For example: if the Ahead of Print file is uploaded in the month of June 2005 then the electronic publication date within the file can not be prior to December 2003.
Be sure to include an ArticleId in the file along with the appropriate ArticleId IdType attribute ("pii" or "doi"). This is REQUIRED of all AOP submissions. Click for more information about Article Identifiers.
Check your file for errors and preview the PubMed Abstract display using the PubMed Citation XML file Validator
FTP the AOP file to your private ftp account, placing it at the top of the directory.
Wait for a Loader Report confirming the loading of the AOP file. If the file loaded successfully, PMIDs will appear for each citation submitted.
Save the Loader Report until you are ready to update the citations; you may use the PMIDs for in the Replacement File.
When you are ready to update your AOP citations, follow our Instructions for Replacement Files.
Please notify the the Data Provider Support Team [publisher@ncbi.nlm.nih.gov] if you intend to begin using the Ahead of Print function. Once you begin sending AOP files, it is not necessary to notify us before each new delivery.
You can check your original AOP citations in PubMed using the query "pubstatusaheadofprint". For example, the search string Arch Microbiol[jour] AND 2008:2020[dp] AND pubstatusaheadofprint will retrieve all AOP citations with the journal title and dates indicated.
Citations in AOP status can be updated/revised as many times as necessary prior to the submission of the final Replacement file. Simply follow the steps above, but add the <Replaces> tag and keep the PubDate PubStatus attribute as "aheadofprint".
Replacement Files can be used for two purposes: updating an Ahead of Print (AOP) citation or correcting a citation currently in [PubMed - as supplied by publisher] status.
AOP citations eventually become "published" citations by way of the publisher sending a Replacement XML file with completed citation information. These replacement files must use the PubStatus attribute value "ppublish" or "epublish" in the <PubDate> tag in order to replace the AOP citation.
Take the following steps to update an AOP citation:
Update the AOP citation file, adding the finalized citation information.
Add the final publication date to the <PubDate> tag, along with the PubStatus="ppublish" or "epublish" attribute. The publication date must be exactly as it appears on the finalized article. See "How should the Publication Date be submitted?"
"Move" the existing PubDate with PubStatus="aheadofprint" attribute to the <History> tag. This will enable the citation to retain the AOP publishing date in PubMed.
Add a single <Replaces> tag to each <Article> to be updated. The <Replaces> tags should be placed after the <Journal> tags and before the <ArticleTitle> tags, and should contain the IdType attribute with one of the following values: "pubmed" (default), "pii", "doi" of the citation to be updated. The PubMed ID (PMID) can be located in the Loader Report or by searching for the article in PubMed.
Verify that the ArticleIdList (pii or doi) in the Replacement File matches the ArticleIdList in the AOP citation in PubMed. If these numbers do not match, the citation will not be updated.
Check the file for errors and preview the PubMed Abstract display using the PubMed Citation XML File Validator.
FTP the Replacement File to your private ftp account, placing it at the top of the directory.
Wait for a Loader Report confirming the loading of the Replacement File. Following the batch of articles is a "Total processed" message indicating the number of articles processed from the uploaded file and the number created, replaced, and rejected.
For additional reference, see our Ahead of Print File Example and the Replacement File that updates it.
Citations with the Publication Status Tag [PubMed - as supplied by publisher] can be corrected by uploading a revised file with <Replaces> tags.
Please note that the following steps are not effective if the citation with error has a Publication Status Tag other than [PubMed - as supplied by publisher]. See our page Correcting Errors in PubMed for more details.
These steps are also not appropriate if the error appeared in the original version of the article (whether print or online). Errors that were published in the original version must be corrected by issuing an Erratum; please see NLM's Errata, Retraction, Duplicate Publication, and Comment Policy Fact Sheet for more information.
Suppose an error existed in the following PubMed citation as a result of an error in the original XML file:
Take the following steps to correct the PubMed citation:
Correct the citation in the original file and delete the rest of the file.
Add <Replaces> tags to the citation in which the error occurred. The <Replaces> tags should be placed after the <Journal> tags and before the <ArticleTitle> tags, and should contain the IdType attribute with one of the following values: "pubmed", "pii", "doi" of the citation to be corrected.
In the example above, the additional tag could look like this:
<Replaces IdType="pubmed">17273292</Replaces>
OR like this:
<Replaces IdType="doi"> 10.1624/105812402X88669</Replaces>
Upload the Replacement File to your private ftp account.
Send an email to publisher@ncbi.nlm.nih.gov to notify us of the uploading of a Replacement File for error correction.
Wait for a new Loader Report confirming the loading of the Replacement File. If the file loaded successfully, the original PMID should appear on the new citation batch.
View revised citations in PubMed 1-2 days after receiving the Loader Report. If error does not appear to be corrected, contact publisher@ncbi.nlm.nih.gov
On rare occasions a publisher may need to remove an Ahead of Print (AOP) article from a journals’ Web site. There are a variety of reasons for this type of withdrawal; plagiarism, copyright infringements, duplicate publication in another journal. PubMed understands that these circumstances cannot always be prevented before AOP citation data is uploaded to PubMed. Thus we have designed the following policy:
If an AOP article is removed completely from the journals’ Web site the publisher should have a Replacement file uploaded to PubMed. The Replacement file should use the following format:
The text "WITHDRAWN:" (without quotation marks) should appear at the beginning of the original article title in the <ArticleTitle> tag.
The text "Ahead of Print article withdrawn by publisher." (without quotation marks) should be added at the beginning of the original text within the <Abstract> tag. If desired the original abstract text may be completely replaced with the above text. For additional reference, see our Instructions for Replacement Files.
Here's an example:
If an AOP article is replaced on the journals’ Web site with a Retraction or Withdrawn Notice then the publisher should have a Replacement file uploaded to PubMed. The Replacement file should match the text of the Retraction or Withdrawn Notice on the journal's Web site.
Here's an example: