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Blast 2 Sequences results

PubMed Entrez BLAST OMIM Taxonomy Structure

BLAST 2 SEQUENCES RESULTS VERSION BLASTP 2.2.20 [Feb-08-2009]

Matrix gap open: gap extension:
x_dropoff: expect: wordsize: Filter View option    
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Show CDS translation

Sequence 1: gi|10946684|5-hydroxytryptamine (serotonin) receptor 6 [Mus musculus] >gi|9087113|sp|Q9R1C8.1|5HT6R_MOUSE RecName: Full=5-hydroxytryptamine receptor 6; Short=5-HT-6; AltName: Full=Serotonin receptor 6 >gi|5669868|gb|AAD46490.1|AF134158_1 serotonin 6 receptor [Mus musculus] >gi|109730955|gb|AAI16654.1| 5-hydroxytryptamine (serotonin) receptor 6 [Mus musculus] >gi|109733289|gb|AAI16653.1| 5-hydroxytryptamine (serotonin) receptor 6 [Mus musculus] >gi|123229163|emb|CAM26545.1| 5-hydroxytryptamine (serotonin) receptor 6 ...
Length = 440 (1 .. 440)

Sequence 2: gi|479128|dopamine receptor [Drosophila melanogaster]
Length = 511 (1 .. 511)





2 1

NOTE:Bitscore and expect value are calculated based on the size of the nr database.





 Score =  194 bits (492),  Expect = 3e-47
 Identities = 112/316 (35%), Positives = 167/316 (52%), Gaps = 7/316 (2%)

Query  29   VAAALCVVIVLTAAANSLLIALICTQPALRNTSNFFLVSLFTSDLMVGLVVMPPAMLNAL  88
            V   L V+I L+ A N L+   I T  +L    N FL SL  +DL V  +VM  A +N L
Sbjct  146  VGIFLSVLIFLSVAGNILVCLAIYTDGSLPRIGNLFLASLAIADLFVASLVMTFAGVNDL  205

Query  89   YGRWVLARGLCLLWTAFDVMCCSASILNLCLISLDRYLLILSPLRYKLRMTAPRALALIL  148
             G W+     C  W AFDVMC +ASILNLC IS+DRY+ I  PLRY   +T   A+  I 
Sbjct  206  LGYWIFGAQFCDTWVAFDVMCSTASILNLCAISMDRYIHIKDPLRYGRWVTRRVAVITIA  265

Query  149  GAWSLAALASFLPLLLGWHE-----LGKARTSAPGQCRLLASLPYVLVASGVTFFLPSGA  203
              W LAA  SF+P+ LG H      + +        C L  +  Y +V+S ++F+ P   
Sbjct  266  AIWLLAAFVSFVPISLGIHRPDQPLIFEDNGKKYPTCALDLTPTYAVVSSCISFYFPCVV  325

Query  204  ICFTYCRILLAARKQAVQVASLT-TGTATAGQALETLQVPRTPRPGMESADSRRLTTKHS  262
            +   YCR+   A+K    + ++T  G     Q  ++++ P+      +  +    ++ + 
Sbjct  326  MIGIYCRLYCYAQKHVKSIKAVTRPGEVAEKQRYKSIRRPKNQPKKFKVRNLHTHSSPYH  385

Query  263  RKALKASLTLGILLSMFFVTWLPFFVASIAQAVC-DCISPGLFDVLTWLGYCNSTMNPII  321
                KA++T+G+++ +F + W+PFF  +I  A C  CI    F +LTWLGY NS  NPII
Sbjct  386  VSDHKAAVTVGVIMGVFLICWVPFFCVNITAAFCKTCIGGQTFKILTWLGYSNSAFNPII  445

Query  322  YPLFMRDFKRALGRFV  337
            Y +F ++F+ A  R +
Sbjct  446  YSIFNKEFRDAFKRIL  461


CPU time:     0.06 user secs.	    0.05 sys. secs	    0.11 total secs.