Reference SNP(refSNP) Cluster Report: rs12792928

Reference SNP(refSNP) Cluster Report: rs12792928

refSNP ID: rs12792928
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	121/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names
NT_009237.17:g.4109307T>C

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss88443545 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs12792928 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss20777190	SSAHASNP\|WGSA-200403-chr11.chr11.NT_009237.16_4086006		fwd/B	C/T	tattaggtgatatatatatatatatatata	acacacacacacacacatatgtataaaaat	03/19/04	03/19/04	121	Genomic			unknown
ss88443545	BCMHGSC_JDW\|JWB-0368401		fwd/B	C/T	tattaggtgatatatatatatatatatata	acacacacacacacacatatgtataaaaat	02/26/08	02/27/08	129	Genomic			unknown

Fasta sequence (Legend)

 GATGAAAATA TGATCATGTA TTATTCAAAT TCACCTTTAT AAGACACATA AAATGTACCT
 CCAACTGCAC ATTTTTCTTT AGATGAACTG TATTTGACCC AAGCTGCTTT AGTCCACTTA
 TCTTGACTAT TTCTGAAATC ATAGTTACTC TTCTTTTGGA TTGTTATATC TCCTCTGCTT
 CCTGTATTCT TTTTCTTCAG CATCACTGGC ATTCCCTCTT TATTAGGTGA TATATATATA
 TATATATATA
 Y
 ACACACACAC ACACACATAT GTATAAAAAT TTCTCGCTCA CATCAGCTTT TTCATGTGAT
 AATTAAAATT GAATCTAACT CTGAGGAAAA AAAAGTGTGG ATATAAAACC AGGGTTCCTT
 TTCAGTAATG GGAGAGGCCC AGAAATCCTA GAGATCTTGA GATTCTGAAA TAAGGGCTCA
 AGCCCTACTC TGCCCAGAAA ATAGGCGAAT AATGCTTCTT TGAATCTGCT TGGTCTTGAT
 GCTATAAATG

GeneView

GeneView via analysis of contig annotation: OR51B4 olfactory receptor, family 51, subfamily B, member 4

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_009237->NM_033179

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_009237->NM_033179->NP_149419	4109307	reverse	3' near gene

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs12792928 maps exactly once on NCBI human chromosome 11

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
11	NW_001838021.1	950608	4981233	plus	T	alt_assembly_8	HuRef	HuRef	view	221
11	NT_009237.17	4109307	5278642	plus	T	ref_assembly	reference	reference	view	221
11	NW_925006.1	940873	5440549	plus	C	alt_assembly_1	Celera	Celera	view	221

NCBI Resource Links

Submitter-Referenced
GenBank
NT_009237

dbSNP Blast Analysis

Population Diversity

There is no frequency data.

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP

UNKNOWN

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Revised: May 25, 2006 1:38 PM .