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UniSTS:13103 Links
D20S558E
Homo sapiens chromosome 20, locus C20orf39
Macaca mulatta chromosome 10, locus LOC704737
Pan troglodytes chromosome 20, locus LOC740833

Found by e-PCR in sequences from Homo sapiens and Pan troglodytes.

Primer InformationHelp

Forward primer:AGCATGAAGCAAGAGTTGCAC
Reverse primer:CTCACCCCGTCATAAGCAG
PCR product size:117 (bp), Homo sapiens

   Homo sapiens
Name: D20S558E
Also known as: GDB:441198 stSG3002
Polymorphism info:  

Cross References Help
Gene GeneID:79953
 Symbol:C20orf39
 Description:chromosome 20 open reading frame 39
 Position:20p11.21
UniGeneHs.124638 Chromosome 20 open reading frame 39

Mapping InformationHelp
D20S558E Sequence Map: Chr 20 Map Viewer
  Position: 24594996-24595112 (bp)
 
D20S558E Sequence Map: Chr 20|HuRef Map Viewer
  Position: 24604372-24604488 (bp)
 
D20S558E Sequence Map: Chr 20|Celera Map Viewer
  Position: 24721316-24721432 (bp)
 
stSG3002 NCBI RH Map: Chr 20 Map Viewer
  Position: 205.4 (cR)
  Lod score: 1.05
 
stSG3002 GeneMap99-GB4 Map: Chr 20 Map Viewer
  Position: 126.96 (cR3000)
  Lod score: 3.00
  Reference Interval: D20S182-D20S106

Electronic PCR results Help
RefSeq mRNA (1)
NM_024893.1 2266 .. 2382 (117 bp)  
 
mRNA (2)
AK024282.1 2266 .. 2382 (117 bp)  
BC030637.1 1768 .. 1884 (117 bp)  
 
Genomic (5 of 8)[Show All Hits]
G07279.1 107 .. 223 (117 bp)  
AL049594.4 53568 .. 53684 (117 bp)  
CH003467.1 24575519 .. 24575635 (117 bp)  
CH003515.1 26086350 .. 26086466 (117 bp)  
CH471133.3 24578492 .. 24578608 (117 bp)  
 
ESTs (5 of 34)[Show All Hits]
Z38996.1 107 .. 223 (117 bp)  
F01451.1 60 .. 176 (117 bp)  
H05223.1 66 .. 183 (118 bp)  
N93994.1 121 .. 238 (118 bp)  
W77990.1 107 .. 223 (117 bp)  
 
Whole Genome Shotgun sequences (4)
AADD01168617.1 4737 .. 4853 (117 bp)  
AADC01141534.1 112702 .. 112818 (117 bp)  
AADB02401922.1 678162 .. 678278 (117 bp)  
ABBA01048734.1 54404 .. 54520 (117 bp)  
 

   Macaca fascicularis
 
Polymorphism info:  

Cross References Help
UniGeneMfa.8734 Macaca fascicularis brain cDNA clone: QorA-12262, similar to human chromosom...


   Macaca mulatta
Name: D20S558E
Polymorphism info:  

Cross References Help
Gene GeneID:704737
 Symbol:LOC704737
 Description:hypothetical protein LOC704737
 Position: 
UniGeneMmu.118 Hypothetical protein LOC704737

Mapping InformationHelp
D20S558E Sequence Map: Chr 10 Map Viewer
  Position: 57879876-57879992 (bp)

   Pan troglodytes
Name: D20S558E
Polymorphism info:  

Cross References Help
Gene GeneID:740833
 Symbol:LOC740833
 Description:hypothetical protein LOC740833
 Position: 

Mapping InformationHelp
D20S558E Sequence Map: Chr 20 Map Viewer
  Position: 24996177-24996293 (bp)

Electronic PCR results Help
RefSeq mRNA (2)
XM_001148167.1 1724 .. 1840 (117 bp)  
XM_001148244.1 1783 .. 1899 (117 bp)  
 
Genomic (1)
CM000334.2 24996177 .. 24996293 (117 bp)  
 
Whole Genome Shotgun sequences (2)
AADA01042609.1 4987 .. 5103 (117 bp)  
AACZ02189926.1 4811 .. 4927 (117 bp)  
 

 

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