BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= AA00439
(526 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|153092866|gb|EDN73903.1| site-specific recombinase [Mann... 743 0.0
gi|114797437|ref|YP_761223.1| site-specific recombinase, re... 490 e-136
gi|126464253|ref|YP_001045366.1| Recombinase [Rhodobacter s... 488 e-136
gi|77464995|ref|YP_354498.1| recombinase [Rhodobacter sphae... 487 e-136
gi|154243686|ref|YP_001409259.1| Recombinase [Xanthobacter ... 483 e-134
gi|23015212|ref|ZP_00054995.1| COG1961: Site-specific recom... 479 e-133
gi|83310296|ref|YP_420560.1| Site-specific recombinase [Mag... 477 e-133
gi|152981971|ref|YP_001355150.1| recombinase [Janthinobacte... 474 e-132
gi|83720518|ref|YP_443260.1| recombinase [Burkholderia thai... 472 e-131
gi|71735375|ref|YP_272411.1| recombinase [Pseudomonas syrin... 469 e-130
gi|94496234|ref|ZP_01302812.1| putative recombinase [Sphing... 468 e-130
gi|39935276|ref|NP_947552.1| putative recombinase [Rhodopse... 468 e-130
gi|87198550|ref|YP_495807.1| Recombinase [Novosphingobium a... 465 e-129
gi|28867276|ref|NP_789895.1| recombinase, putative [Pseudom... 463 e-128
gi|124262730|ref|YP_001023200.1| putative recombinase [Meth... 461 e-128
gi|27375986|ref|NP_767515.1| recombinase [Bradyrhizobium ja... 459 e-127
gi|83748935|ref|ZP_00945944.1| Site-specific recombinases [... 458 e-127
gi|126733934|ref|ZP_01749681.1| Site-specific recombinase [... 458 e-127
gi|16119269|ref|NP_395975.1| hypothetical protein AGR_pAT_5... 457 e-127
gi|17938630|ref|NP_535418.1| recombinase [Agrobacterium tum... 457 e-127
gi|118714161|ref|ZP_01566721.1| Recombinase [Burkholderia c... 454 e-126
gi|83719315|ref|YP_440635.1| recombinase [Burkholderia thai... 453 e-125
gi|124268166|ref|YP_001022170.1| putative recombinase [Meth... 447 e-124
gi|144897917|emb|CAM74781.1| Recombinase [Magnetospirillum ... 422 e-116
gi|153947997|ref|YP_001399756.1| site-specific recombinase,... 395 e-108
gi|118744247|ref|ZP_01592242.1| Recombinase [Geobacter lovl... 393 e-107
gi|118745346|ref|ZP_01593322.1| Recombinase [Geobacter lovl... 384 e-105
gi|157080703|gb|ABV20411.1| site-specific recombinase, reso... 384 e-104
gi|146312530|ref|YP_001177604.1| Recombinase [Enterobacter ... 374 e-102
gi|13488417|ref|NP_109424.1| recombinase homolog [Mesorhizo... 373 e-101
gi|148253008|ref|YP_001237593.1| putative recombinase [Brad... 361 6e-98
gi|13476719|ref|NP_108288.1| site-specific recombinase [Mes... 355 5e-96
gi|27375141|ref|NP_766670.1| recombinase [Bradyrhizobium ja... 292 5e-77
gi|146337625|ref|YP_001202673.1| putative recombinase [Brad... 286 2e-75
gi|69935264|ref|ZP_00630244.1| Recombinase [Paracoccus deni... 284 1e-74
gi|74316365|ref|YP_314105.1| hypothetical protein Tbd_0347 ... 233 2e-59
gi|148553113|ref|YP_001260695.1| Recombinase [Sphingomonas ... 219 3e-55
gi|27383119|ref|NP_774648.1| similar to recombinase [Bradyr... 146 3e-33
gi|147668865|ref|YP_001213683.1| Resolvase, N-terminal doma... 103 4e-20
gi|147668949|ref|YP_001213767.1| Resolvase, N-terminal doma... 97 2e-18
gi|153815808|ref|ZP_01968476.1| hypothetical protein RUMTOR... 94 2e-17
gi|57235099|ref|YP_182249.1| resolvase domain protein [Deha... 93 4e-17
gi|57235097|ref|YP_180815.1| resolvase domain protein [Deha... 93 5e-17
gi|51891474|ref|YP_074165.1| site-specific recombinase [Sym... 92 8e-17
gi|153853425|ref|ZP_01994834.1| hypothetical protein DORLON... 90 5e-16
gi|57234989|ref|YP_180904.1| resolvase domain protein [Deha... 86 5e-15
gi|150021364|ref|YP_001306718.1| Resolvase, N-terminal doma... 82 1e-13
gi|113936514|ref|ZP_01422407.1| hypothetical protein CaulDR... 81 2e-13
gi|114844278|ref|ZP_01454731.1| Recombinase [Thermoanaeroba... 80 3e-13
gi|153815909|ref|ZP_01968577.1| hypothetical protein RUMTOR... 79 7e-13
gi|28211764|ref|NP_782708.1| DNA integration/recombination ... 79 9e-13
gi|110634568|ref|YP_674776.1| Recombinase [Mesorhizobium sp... 78 2e-12
gi|153810586|ref|ZP_01963254.1| hypothetical protein RUMOBE... 75 9e-12
gi|150020297|ref|YP_001305651.1| Resolvase, N-terminal doma... 75 2e-11
gi|27383118|ref|NP_774647.1| similar to recombinase [Bradyr... 74 2e-11
gi|148252037|ref|YP_001236622.1| putative Resolvase [Bradyr... 74 4e-11
gi|52082601|ref|YP_081392.1| site-specific DNA recombinase ... 73 4e-11
gi|156869034|gb|EDO62406.1| hypothetical protein CLOLEP_008... 73 5e-11
gi|114844655|ref|ZP_01455097.1| Recombinase [Thermoanaeroba... 71 1e-10
gi|118726981|ref|ZP_01575594.1| Recombinase [Clostridium ce... 70 3e-10
gi|153955240|ref|YP_001396005.1| hypothetical protein CKL_2... 69 6e-10
gi|153956423|ref|YP_001397188.1| hypothetical protein CKL_3... 69 7e-10
gi|150391697|ref|YP_001321746.1| Resolvase, N-terminal doma... 69 8e-10
gi|156867339|gb|EDO60711.1| hypothetical protein CLOLEP_023... 69 8e-10
gi|150390378|ref|YP_001320427.1| Resolvase, N-terminal doma... 69 1e-09
gi|116630113|ref|YP_815285.1| Site-specific recombinase, DN... 68 1e-09
gi|125972526|ref|YP_001036436.1| Recombinase [Clostridium t... 67 2e-09
gi|156867778|gb|EDO61150.1| hypothetical protein CLOLEP_015... 67 3e-09
gi|156866822|gb|EDO60194.1| hypothetical protein CLOLEP_030... 67 3e-09
gi|118727442|ref|ZP_01576043.1| Recombinase [Clostridium ce... 67 4e-09
gi|69937738|ref|ZP_00632345.1| Resolvase, N-terminal:Recomb... 67 4e-09
gi|118726462|ref|ZP_01575087.1| Recombinase [Clostridium ce... 66 7e-09
gi|83582441|emb|CAJ45365.1| hypothetical protein [Streptoco... 66 7e-09
gi|92116189|ref|YP_575918.1| Recombinase [Nitrobacter hambu... 66 7e-09
gi|147668748|ref|YP_001213566.1| Resolvase, N-terminal doma... 65 8e-09
gi|154244771|ref|YP_001415729.1| Recombinase [Xanthobacter ... 65 1e-08
gi|150391699|ref|YP_001321748.1| Resolvase, N-terminal doma... 65 1e-08
gi|125974177|ref|YP_001038087.1| Recombinase [Clostridium t... 65 1e-08
gi|154483745|ref|ZP_02026193.1| hypothetical protein EUBVEN... 65 2e-08
gi|57234193|ref|YP_181782.1| site-specific recombinase, pha... 64 2e-08
gi|83944731|ref|ZP_00957097.1| resolvase [Oceanicaulis alex... 64 3e-08
gi|154250558|ref|YP_001411382.1| Resolvase domain [Parvibac... 64 3e-08
gi|50914514|ref|YP_060486.1| Site-specific recombinase [Str... 64 4e-08
gi|94995113|ref|YP_603211.1| Site-specific recombinase [Str... 63 4e-08
gi|90422509|ref|YP_530879.1| Recombinase [Rhodopseudomonas ... 63 4e-08
gi|75677316|ref|YP_319737.1| resolvase [Nitrobacter winogra... 63 4e-08
gi|154484855|ref|ZP_02027303.1| hypothetical protein EUBVEN... 63 4e-08
gi|153010458|ref|YP_001371672.1| Recombinase [Ochrobactrum ... 63 4e-08
gi|154484024|ref|ZP_02026472.1| hypothetical protein EUBVEN... 62 7e-08
gi|91978420|ref|YP_571079.1| Recombinase [Rhodopseudomonas ... 62 8e-08
gi|156869036|gb|EDO62408.1| hypothetical protein CLOLEP_008... 62 1e-07
gi|154483218|ref|ZP_02025666.1| hypothetical protein EUBVEN... 61 1e-07
gi|56964629|ref|YP_176360.1| site-specific recombinase for ... 61 2e-07
gi|154506193|ref|ZP_02042931.1| hypothetical protein RUMGNA... 61 2e-07
gi|154497874|ref|ZP_02036252.1| hypothetical protein BACCAP... 61 2e-07
gi|125974810|ref|YP_001038720.1| Recombinase [Clostridium t... 61 2e-07
gi|85716806|ref|ZP_01047773.1| resolvase [Nitrobacter sp. N... 61 2e-07
gi|154244234|ref|YP_001415192.1| Resolvase domain [Xanthoba... 61 2e-07
gi|153810526|ref|ZP_01963194.1| hypothetical protein RUMOBE... 60 3e-07
gi|69933856|ref|ZP_00628992.1| Resolvase, N-terminal:Recomb... 60 3e-07
gi|148556286|ref|YP_001263868.1| Resolvase, N-terminal doma... 60 3e-07
gi|154500553|ref|ZP_02038591.1| hypothetical protein BACCAP... 60 4e-07
gi|118727990|ref|ZP_01576570.1| Recombinase [Clostridium ce... 60 4e-07
gi|83943296|ref|ZP_00955755.1| resolvase [Sulfitobacter sp.... 60 4e-07
gi|148324400|gb|EDK89650.1| possible recombinase [Fusobacte... 60 4e-07
gi|145622588|ref|ZP_01778546.1| Recombinase [Petrotoga mobi... 60 5e-07
gi|114766046|ref|ZP_01445056.1| resolvase [Roseovarius sp. ... 60 5e-07
gi|154498001|ref|ZP_02036379.1| hypothetical protein BACCAP... 59 6e-07
gi|115523060|ref|YP_779971.1| Recombinase [Rhodopseudomonas... 59 6e-07
gi|126460570|ref|YP_001056848.1| Resolvase, N-terminal doma... 59 7e-07
gi|114844657|ref|ZP_01455099.1| Recombinase [Thermoanaeroba... 59 1e-06
gi|113936240|ref|ZP_01422135.1| Resolvase-like:Recombinase ... 59 1e-06
gi|153812493|ref|ZP_01965161.1| hypothetical protein RUMOBE... 59 1e-06
gi|154248492|ref|YP_001419450.1| Resolvase domain [Xanthoba... 59 1e-06
gi|154483931|ref|ZP_02026379.1| hypothetical protein EUBVEN... 59 1e-06
gi|76787538|ref|YP_329391.1| prophage LambdaSa04, site-spec... 58 1e-06
gi|92119298|ref|YP_579027.1| Recombinase [Nitrobacter hambu... 58 2e-06
gi|119880098|ref|ZP_01646457.1| Recombinase [Salinispora ar... 57 2e-06
gi|154497872|ref|ZP_02036250.1| hypothetical protein BACCAP... 57 2e-06
gi|551136|gb|AAB51419.1| TnpX [Clostridium perfringens] 57 3e-06
gi|42779500|ref|NP_976747.1| DNA recombinase, putative [Bac... 57 3e-06
gi|86739623|ref|YP_480023.1| Recombinase [Frankia sp. CcI3]... 57 3e-06
gi|134269477|emb|CAL69885.1| TndX protein [Streptococcus py... 57 4e-06
gi|126698093|ref|YP_001086990.1| conjugative transposon sit... 57 4e-06
gi|118739060|ref|ZP_01587136.1| Recombinase [Dinoroseobacte... 57 4e-06
gi|154500164|ref|ZP_02038202.1| hypothetical protein BACCAP... 57 4e-06
gi|85717095|ref|ZP_01048055.1| recombinase [Nitrobacter sp.... 57 4e-06
gi|69937525|ref|ZP_00632159.1| Resolvase, N-terminal:Recomb... 56 5e-06
gi|154500946|ref|ZP_02038984.1| hypothetical protein BACCAP... 56 6e-06
gi|118725803|ref|ZP_01574439.1| Recombinase [Clostridium ce... 56 6e-06
gi|119384704|ref|YP_915760.1| Recombinase [Paracoccus denit... 56 6e-06
gi|154252207|ref|YP_001413031.1| Resolvase domain [Parvibac... 56 7e-06
gi|126699493|ref|YP_001088390.1| site-specific recombinase ... 56 7e-06
gi|50914470|ref|YP_060442.1| Site-specific recombinase [Str... 56 8e-06
gi|89897338|ref|YP_520825.1| hypothetical protein DSY4592 [... 55 9e-06
gi|125974204|ref|YP_001038114.1| Recombinase [Clostridium t... 55 1e-05
>gi|153092866|gb|EDN73903.1| site-specific recombinase [Mannheimia haemolytica PHL213]
Length = 543
Score = 743 bits (1918), Expect = 0.0, Method: Composition-based stats.
Identities = 376/528 (71%), Positives = 437/528 (82%), Gaps = 5/528 (0%)
Query: 4 KNLAVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSL 63
KN AV+YIRMSTEHQEFSPD+QR FI+ YAKE GL + REY+DEG+SGL+AE RPQFLS+
Sbjct: 10 KNQAVSYIRMSTEHQEFSPDLQRCFIENYAKENGLEIIREYIDEGKSGLTAEHRPQFLSM 69
Query: 64 INFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQ 123
I VQSG ADF HILVYD+SRWGRF+NIDES HYE IC+ GIKVHYCAEPFKGNDI SQ
Sbjct: 70 IQLVQSGQADFDHILVYDVSRWGRFMNIDESGHYELICTYQGIKVHYCAEPFKGNDIASQ 129
Query: 124 IFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKT 183
I+K +KR S G+YCRELG KVFNGQKNLI+ GFRQGG AGFGLRR L+ G+PKF+L+
Sbjct: 130 IYKTMKRLSVGDYCRELGVKVFNGQKNLIQHGFRQGGVAGFGLRRRLIDCQGNPKFDLQR 189
Query: 184 GDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTK 243
GDRKSLQ+DRVIL+AGP+ EQ+I+ QIYHDF+Y+HKTE+QIADSLNAQ I+TDRNT WTK
Sbjct: 190 GDRKSLQTDRVILVAGPKEEQEIVRQIYHDFVYQHKTEQQIADSLNAQGIVTDRNTAWTK 249
Query: 244 GVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAI 303
GVVHQILINEKYVGHNVWNK SKT + +GKNP +WVR EN FEAI+PQ LFNAAQ I
Sbjct: 250 GVVHQILINEKYVGHNVWNKRSASKTREYKGKNPVEEWVRAENVFEAIVPQALFNAAQTI 309
Query: 304 IHQRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHY 363
IHQRS +L+D+EML++L+ LLK KGKLSGLIIDEAE+CPSSSAYSSRFGSL+ TY +I+Y
Sbjct: 310 IHQRSARLSDDEMLEQLKLLLKEKGKLSGLIIDEAENCPSSSAYSSRFGSLLNTYTLINY 369
Query: 364 EPERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRV-SIAPNDLLKINEEFTASLVVSP 422
EPERDYHYVEINRL+RQQ+K VQQ L+ II LGG V S DL+ IN EFTAS+V+S
Sbjct: 370 EPERDYHYVEINRLLRQQHKNFVQQTLDTIIELGGVVLSDDVTDLVHINNEFTASIVLSR 429
Query: 423 CRPTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPA 482
CR T G+KRW+IRFDT L PD+TIAVR++E A I+DYYL P + + KLRLAESNPA
Sbjct: 430 CRLTPSGSKRWLIRFDTSLNPDITIAVRINESATEILDYYLLPTTEKVNEKLRLAESNPA 489
Query: 483 ELDIYRFSNLDRFFIMVERILLG----VHYGYSNYSDRRYSDYQSKNA 526
EL+IYR NLDRFFIMVERIL+ +SN S R+ S QS+NA
Sbjct: 490 ELEIYRHDNLDRFFIMVERILVKEFIYAKRHHSNSSYRQNSGTQSQNA 537
>gi|114797437|ref|YP_761223.1| site-specific recombinase, resolvase family [Hyphomonas neptunium
ATCC 15444]
gi|114737611|gb|ABI75736.1| site-specific recombinase, resolvase family [Hyphomonas neptunium
ATCC 15444]
Length = 525
Score = 490 bits (1261), Expect = e-136, Method: Composition-based stats.
Identities = 251/503 (49%), Positives = 334/503 (66%), Gaps = 3/503 (0%)
Query: 4 KNLAVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSL 63
++ VAY+RMST+HQ++S + Q +++YA ++G + R Y D GRSGL + R SL
Sbjct: 20 RDPVVAYVRMSTDHQKYSTENQLDVLRRYADDRGYEIIRVYEDSGRSGLRLDGREALQSL 79
Query: 64 INFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGS 122
I V +G ADF ILVYD+SRWGRF N DE A++E +CS+ GI+VHYC E F+ + IGS
Sbjct: 80 IAAVSAGQADFQAILVYDVSRWGRFQNADEGAYHEYVCSRAGIRVHYCGEQFENDGSIGS 139
Query: 123 QIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELK 182
+ K VKR AGEY REL KVF GQ L+E G+RQGG G+GLRR+L+ GSPK EL
Sbjct: 140 NLLKTVKRVMAGEYSRELSVKVFAGQCRLVELGYRQGGHPGYGLRRMLIDEQGSPKGELS 199
Query: 183 TGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWT 242
G+RKSLQ+DRV+LI GPE E I+ +IY F+ R +E QIA LNA+ +LTD + WT
Sbjct: 200 KGERKSLQTDRVVLIPGPEAECDIVREIYALFVLRGLSETQIAALLNARGVLTDFDRPWT 259
Query: 243 KGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQA 302
+ VHQILINEKY+GHN++N+ + K + R KNP W+R +AF AI+ + LF A+
Sbjct: 260 RAAVHQILINEKYIGHNIFNR-VSFKLKQRRVKNPREMWIRANDAFPAIVEEALFLRARQ 318
Query: 303 IIHQRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIH 362
I+ RS L+D+++L +LR LL+ KG LSG IIDE E PSS AY RFGSL+R Y +I
Sbjct: 319 IVDARSQHLSDDDLLTRLRGLLQQKGVLSGFIIDECETMPSSGAYRHRFGSLLRAYQLIG 378
Query: 363 YEPERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSI-APNDLLKINEEFTASLVVS 421
Y+PERDY Y+EINR +R + + V +++ I GG+ + A L+ +N EF S++++
Sbjct: 379 YDPERDYRYIEINRRLRAAHPQFVADIISGIQTAGGKAEVDAATQLICVNGEFALSVILA 438
Query: 422 PCRPTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNP 481
C T G+ RW +R DTGL PD+TIAVR+DE DY+L P S KLRL+E N
Sbjct: 439 RCSATLAGSLRWHVRLDTGLVPDITIAVRMDEFNRGPQDYFLLPSLDITSEKLRLSEQNG 498
Query: 482 AELDIYRFSNLDRFFIMVERILL 504
LD YRF LD F+M R L
Sbjct: 499 LGLDAYRFDTLDYLFLMSRRAQL 521
>gi|126464253|ref|YP_001045366.1| Recombinase [Rhodobacter sphaeroides ATCC 17029]
gi|126106064|gb|ABN78594.1| Recombinase [Rhodobacter sphaeroides ATCC 17029]
Length = 523
Score = 488 bits (1256), Expect = e-136, Method: Composition-based stats.
Identities = 249/497 (50%), Positives = 336/497 (67%), Gaps = 3/497 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
AVAY+RMST+HQ++S + Q I+ YA +GL + R + D GRSGL + R +L+
Sbjct: 21 AVAYVRMSTDHQKYSTENQLDVIRSYAAARGLQILRIFEDSGRSGLRLDGREALQNLMGE 80
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
VQSG ADF ILVYD+SRWGRF + DE A++E +CS+ GI+VHYC E F+ + IGS +
Sbjct: 81 VQSGRADFKAILVYDVSRWGRFQDADEGAYHEHVCSRAGIRVHYCGEQFENDGSIGSNLL 140
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K VKR AGEY REL KVF GQ L+E G+RQGG AG+GLRR+L+ GSPK EL G+
Sbjct: 141 KTVKRVMAGEYSRELSVKVFAGQCRLVELGYRQGGAAGYGLRRVLIDEHGSPKGELSRGE 200
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
+KSLQ+DRVIL+ GPE EQ+++ ++Y F+ + ER+IA LNA TD + WT+
Sbjct: 201 QKSLQTDRVILVPGPEEEQRVVQRMYAMFVNEGRPEREIAKILNADGHRTDLDRPWTRAT 260
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
VHQ+L NEKY+G+NV+ K + K + R NP W+R E A+ AI+ Q LF A+ I+
Sbjct: 261 VHQVLTNEKYIGNNVFAK-VSFKLKQRRVVNPREMWIRAEGAYPAIVDQALFLRAREIVD 319
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
RS +DE++LD LR +L+ +G LSGLIIDE +D PSSSAY SRFGSL+R Y +I YEP
Sbjct: 320 ARSRHFSDEQLLDALRAILRRQGMLSGLIIDEEDDLPSSSAYRSRFGSLLRAYRLIGYEP 379
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAPN-DLLKINEEFTASLVVSPCR 424
+RDY Y+E NR +RQ + ++V +++ + GG P+ DL+++N+EFT S+V++ C
Sbjct: 380 DRDYSYIEANRALRQAHPQVVAEIIAGVTRHGGSAVQDPDTDLVRVNDEFTVSIVLARCT 439
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
T G+ RW IR DTGL PD+TIAVR+DE E DYY+ P KL+LAE N L
Sbjct: 440 ATAAGSLRWPIRLDTGLVPDITIAVRMDEVNEAPRDYYVLPSIDMTFGKLKLAEQNGLAL 499
Query: 485 DIYRFSNLDRFFIMVER 501
D YRF +D F+ + R
Sbjct: 500 DAYRFDTVDFFYALASR 516
>gi|77464995|ref|YP_354498.1| recombinase [Rhodobacter sphaeroides 2.4.1]
gi|77389413|gb|ABA80597.1| recombinase [Rhodobacter sphaeroides 2.4.1]
Length = 523
Score = 487 bits (1253), Expect = e-136, Method: Composition-based stats.
Identities = 249/497 (50%), Positives = 336/497 (67%), Gaps = 3/497 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
AVAY+RMST+HQ++S + Q I+ YA +GL + R + D GRSGL + R +L+
Sbjct: 21 AVAYVRMSTDHQKYSTENQLDVIRSYAAARGLQILRVFEDSGRSGLRLDGREALQNLMGE 80
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
VQSG ADF ILVYD+SRWGRF + DE A++E +CS+ GI+VHYC E F+ + IGS +
Sbjct: 81 VQSGRADFKAILVYDVSRWGRFQDADEGAYHEHVCSRAGIRVHYCGEQFENDGSIGSNLL 140
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K VKR AGEY REL KVF GQ L+E G+RQGG AG+GLRR+L+ GSPK EL G+
Sbjct: 141 KTVKRVMAGEYSRELSVKVFAGQCRLVELGYRQGGAAGYGLRRVLIDEHGSPKGELSRGE 200
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
+KSLQ+DRVIL+ GPE EQ+++ ++Y F+ + ER+IA LNA TD + WT+
Sbjct: 201 QKSLQTDRVILVPGPEEEQRVVQRMYAMFVDEGRPEREIAKILNADGHRTDLDRPWTRAT 260
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
VHQ+L +EKY+G+NV+ K + K + R NP W+R E A+ AI+ Q LF A+ I+
Sbjct: 261 VHQVLTSEKYIGNNVFAK-VSFKLKQRRVVNPREMWIRAEGAYPAIVDQALFLRAREIVD 319
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
RS +DE++LD LR +L+ +G LSGLIIDE E+ PSSSAY SRFGSL+R Y +I YEP
Sbjct: 320 ARSRHFSDEQLLDALRAILRRQGMLSGLIIDEEENLPSSSAYRSRFGSLLRAYRLIGYEP 379
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAPN-DLLKINEEFTASLVVSPCR 424
+RDY Y+E NR +RQ + ++V +++ + GG P+ DL+++N+EFT S+V++ C
Sbjct: 380 DRDYSYIEANRALRQAHPQVVAEIIAGVTRHGGSAVQDPDTDLVRVNDEFTVSIVLARCT 439
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
T G+ RW IR DTGL PD+TIAVR+DE E DYY+ P KL+LAE N L
Sbjct: 440 ATAAGSLRWRIRLDTGLVPDITIAVRMDEVNEAPRDYYVLPSIDMTVGKLKLAEQNGLAL 499
Query: 485 DIYRFSNLDRFFIMVER 501
D YRF LD F+ + R
Sbjct: 500 DAYRFDTLDFFYALASR 516
>gi|154243686|ref|YP_001409259.1| Recombinase [Xanthobacter autotrophicus Py2]
gi|154162808|gb|ABS70023.1| Recombinase [Xanthobacter autotrophicus Py2]
Length = 519
Score = 483 bits (1242), Expect = e-134, Method: Composition-based stats.
Identities = 251/501 (50%), Positives = 332/501 (66%), Gaps = 3/501 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTEHQ +S + Q I+ YA + R Y DEG+SGL+ + R LI
Sbjct: 17 AAQYVRMSTEHQRYSTENQADAIRDYAARYNCAIVRTYADEGKSGLNIDGRAGLQKLIAD 76
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
V G+ADF +LVYDISRWGRF + DESA+YE +C + G++V YCAEPF + +GS I
Sbjct: 77 VTGGHADFEIVLVYDISRWGRFQDADESAYYEYLCRRAGVRVEYCAEPFDNDGSLGSDIQ 136
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K +KR AGEY REL KVF GQ LIE+GFRQGGPAGFGLRR L+ G K L +
Sbjct: 137 KMLKRKMAGEYSRELSVKVFAGQCRLIEKGFRQGGPAGFGLRRQLVDEAGRSKALLARLE 196
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
KS+Q+DRV+L+ GP E +++ IY F+ + E +IA LNA+ I TD WT+G
Sbjct: 197 HKSIQTDRVVLVPGPSDEIEVVRHIYQSFVEDGRNEGEIAIMLNAEGIRTDLGRDWTRGT 256
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
VHQ+LINEKY+G+NVWN+ T+ + R +N S +R E AF AI+ + LF+AAQAII
Sbjct: 257 VHQVLINEKYIGNNVWNRG-TAALKRKRTRNEPSMLIRAEGAFPAIVDRLLFDAAQAIIR 315
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
RS +L+D +MLD LR LL G LSGL+IDEA DCPSSSAY SRFGSL+RTY+++ Y P
Sbjct: 316 GRSARLSDADMLDVLRRLLAEHGYLSGLMIDEAADCPSSSAYRSRFGSLLRTYSLVGYAP 375
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAPND-LLKINEEFTASLVVSPCR 424
+RD+ YVE NR +RQ+ ++V +VL + A G V + P +L INEE TA+L++ C
Sbjct: 376 DRDFAYVESNRRLRQRNPQVVDEVLAALRAAGASVVLDPETAILTINEEVTAALLLCRCT 435
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
T G+ RW+IR D + PD+TIAVR++ E + DYYL P + +LRLAE N A L
Sbjct: 436 QTAAGSLRWLIRLDGPVPPDITIAVRMEPGEEAVRDYYLLPSLDGRAARLRLAERNEAGL 495
Query: 485 DIYRFSNLDRFFIMVERILLG 505
D +RF+ L+ + ++ RI L
Sbjct: 496 DTFRFATLEALYELMRRIPLA 516
>gi|23015212|ref|ZP_00054995.1| COG1961: Site-specific recombinases, DNA invertase Pin homologs
[Magnetospirillum magnetotacticum MS-1]
Length = 519
Score = 479 bits (1234), Expect = e-133, Method: Composition-based stats.
Identities = 251/492 (51%), Positives = 324/492 (65%), Gaps = 3/492 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTEHQ +S + Q I +YA +G+ + R Y DEG+SGLS + R LI+
Sbjct: 25 AAQYVRMSTEHQRYSTENQADIIAQYAARRGIAIVRTYADEGKSGLSIDGRDALKLLIHD 84
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
V++GN DF+ ILVYDISRWGRF + DESA+YE +C + GI V +CAE F+ + + + I
Sbjct: 85 VEAGNTDFTTILVYDISRWGRFQDADESAYYEHVCKRAGITVQFCAEQFENDGSLSATII 144
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K +KR AGEY REL KVF GQ LIE G+RQGG AGFGLRR+LL GSPK L G+
Sbjct: 145 KGMKRAMAGEYSRELSVKVFTGQCRLIELGYRQGGAAGFGLRRMLLDERGSPKGILTRGE 204
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
KSLQ+DRV+L+ GP E +I+ +IY F+ KTE +IA LNA+ + TD WT+G
Sbjct: 205 HKSLQTDRVVLVPGPPDEVEIVQRIYSMFVDGKKTEGEIAAILNAEGLSTDYGRPWTRGT 264
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
+HQ+L NEKYVG+NV+N+ + K K R N W+R + AF AI+P +F A II
Sbjct: 265 IHQVLSNEKYVGNNVFNR-MSFKLKKKRVHNGADIWIRRDGAFPAIVPIEMFRTAGDIIV 323
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
RS++ +D EMLD+L LL +G+LSGLIIDE + PSSSAY SRFGSL+R Y ++ Y P
Sbjct: 324 ARSVRYSDGEMLDRLAGLLADRGELSGLIIDEMDGMPSSSAYRSRFGSLLRAYQLVGYAP 383
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSI-APNDLLKINEEFTASLVVSPCR 424
RDY YVEINR +R+ + IV++ + I LGG V DLL IN EFTAS+V+ C+
Sbjct: 384 GRDYRYVEINRFLRRMHPDIVERAITAIEDLGGTVRRDLETDLLAINGEFTASIVIVRCQ 443
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
T G RW IRFD GL PD+T+A+R+ + I+DYYL P LRL E N L
Sbjct: 444 ETQAGALRWKIRFDAGLRPDITVAIRMAAGNQEILDYYLLPRTEMMGADLRLKEDNGIFL 503
Query: 485 DIYRFSNLDRFF 496
D +RF LDRFF
Sbjct: 504 DAFRFDTLDRFF 515
>gi|83310296|ref|YP_420560.1| Site-specific recombinase [Magnetospirillum magneticum AMB-1]
gi|82945137|dbj|BAE50001.1| Site-specific recombinase [Magnetospirillum magneticum AMB-1]
Length = 524
Score = 477 bits (1228), Expect = e-133, Method: Composition-based stats.
Identities = 259/498 (52%), Positives = 332/498 (66%), Gaps = 5/498 (1%)
Query: 10 YIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQS 69
Y+RMSTEHQ++S + Q I++YA + G + R Y D+G+SGL + R +L++ VQS
Sbjct: 25 YVRMSTEHQQYSTENQADAIRQYADDHGFEIVRTYRDDGKSGLRLDGRKALQNLLDDVQS 84
Query: 70 GNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIG--SQIFKA 127
G ADFS +LVYD+SRWGRF N DE A+YE C GI VHYCAE F ND S I KA
Sbjct: 85 GRADFSIVLVYDVSRWGRFQNPDEGAYYELCCDLAGIAVHYCAEQFD-NDGSPFSHIIKA 143
Query: 128 VKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRK 187
+KR AGEYCREL KVF GQ+ LI G+RQGGPAGFGLRR L+ G+ K L G++K
Sbjct: 144 LKRTMAGEYCRELSVKVFTGQRRLITLGYRQGGPAGFGLRRQLIDHTGTQKNVLDRGEQK 203
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVH 247
S+Q+DRVILI GP E +++ IY F+ K+ER+IA +LN + I TD WT+G VH
Sbjct: 204 SIQTDRVILIPGPPEEIEVVRSIYRAFVVDGKSEREIALALNGRGIATDLGRPWTRGTVH 263
Query: 248 QILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIHQR 307
Q+LINEKY+G+NVWN+ + K K R +N WVR + F II LF+AAQ II R
Sbjct: 264 QVLINEKYIGNNVWNRR-SFKLKKKRVENAPDDWVRADAVFSPIIDHALFDAAQTIIRGR 322
Query: 308 SIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEPER 367
S +L+ EEML+ LR LL+ +G LSG++IDEA+ CPSSSAY SRFGSL+R Y ++ + P+R
Sbjct: 323 SQRLSSEEMLELLRELLERRGFLSGIMIDEADHCPSSSAYQSRFGSLLRAYELVGFTPDR 382
Query: 368 DYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAP-NDLLKINEEFTASLVVSPCRPT 426
DY Y+EINRL+R+ + +++ + I GGRV P DLL IN EFTASLV+ C+ T
Sbjct: 383 DYRYIEINRLLRRMHPQVLADTVAGIEQTGGRVEQDPVTDLLTINREFTASLVIVRCQET 442
Query: 427 TRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAELDI 486
G+ RW IR DTGL PD+TIAVR+D DYYL P + +LRL E N LD
Sbjct: 443 PAGSLRWHIRLDTGLCPDITIAVRMDPANAQARDYYLLPNRDMTGPRLRLGEHNGIALDS 502
Query: 487 YRFSNLDRFFIMVERILL 504
+RF L+ F M RI L
Sbjct: 503 FRFDTLEPLFGMAARIGL 520
>gi|152981971|ref|YP_001355150.1| recombinase [Janthinobacterium sp. Marseille]
gi|151282048|gb|ABR90458.1| recombinase [Janthinobacterium sp. Marseille]
Length = 521
Score = 474 bits (1220), Expect = e-132, Method: Composition-based stats.
Identities = 251/500 (50%), Positives = 329/500 (65%), Gaps = 3/500 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
AV Y+RMSTEHQ++S + Q I++YA +G+ + R Y D G+SGL + R LI
Sbjct: 19 AVEYVRMSTEHQQYSTENQADKIREYAAHRGIEIVRTYTDAGKSGLRIDGRTSLQQLIKD 78
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIG-SQIF 125
V+SG ADF+ ILVYD+SRWGRF + DESA+YE C + GI+V YCAE F+ + S I
Sbjct: 79 VESGTADFTIILVYDVSRWGRFQDADESAYYEYRCRRAGIQVAYCAEQFENDGSPVSTIV 138
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K VKR AGEY REL KVF GQ LIE G+RQGGPAG+GLRR+L+ +GS K EL+ G+
Sbjct: 139 KGVKRAMAGEYSRELSAKVFAGQCRLIELGYRQGGPAGYGLRRVLIDQNGSIKTELRRGE 198
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
KSLQ+DRVIL+ GPE E +I+ QIY FI E +IA LN +LTD + WT+
Sbjct: 199 HKSLQTDRVILMPGPEEEIRIVSQIYRWFIDDGLVESEIAVRLNGMNMLTDLDRAWTRAT 258
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
VHQ+LINEKYVG+NV+N+ + K KLR N W++ + AFE I+P +F AQ II
Sbjct: 259 VHQVLINEKYVGNNVYNR-ISFKLKKLRVINTPDMWIKKDGAFEPIVPPDIFYTAQGIIR 317
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
R+ + T+EE++D+LR+L K +G LSGLII+E + PSSS Y+ RFGSL++ Y M+ + P
Sbjct: 318 ARTRRYTNEELVDRLRSLYKKRGLLSGLIINETDGMPSSSVYAFRFGSLVKAYQMVGFTP 377
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAP-NDLLKINEEFTASLVVSPCR 424
+RDY Y+E+NR +R + IV Q +I LGG V P D+L +N EF SLV++ C+
Sbjct: 378 DRDYRYLEVNRFLRSLHPGIVAQTEQQIAELGGLVVRDPGTDILWVNGEFNVSLVLARCQ 437
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
G W IR DT L PD+T+AVRLD D ++ +DYYL P +L LAE N EL
Sbjct: 438 THDSGRHHWKIRLDTSLLPDITVAVRLDHDNQSALDYYLLPRLDFGQPRLSLAEQNAVEL 497
Query: 485 DIYRFSNLDRFFIMVERILL 504
+ YRF LD F M ER L
Sbjct: 498 ESYRFDTLDYLFGMAERTRL 517
>gi|83720518|ref|YP_443260.1| recombinase [Burkholderia thailandensis E264]
gi|83654343|gb|ABC38406.1| recombinase [Burkholderia thailandensis E264]
Length = 528
Score = 472 bits (1215), Expect = e-131, Method: Composition-based stats.
Identities = 252/500 (50%), Positives = 332/500 (66%), Gaps = 3/500 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A AY+RMSTEHQ++S + QR I +A + L + + Y DEG+SGL E R Q +L+
Sbjct: 19 AAAYVRMSTEHQQYSTENQRDVIFAFAAARNLEIVKIYADEGKSGLRLEGRDQLKALLRD 78
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIG-SQIF 125
V+SG AD+S +LVYD+SRWGRF + DESA YE C + G++V YCAE F+ + S I
Sbjct: 79 VESGQADYSVVLVYDVSRWGRFQDPDESASYEIRCKQAGVRVLYCAEQFENDGSAVSSII 138
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K VKR AGEY REL KV GQ LI+ G RQGGPAG+GLRR+L+ G+ K ELK G+
Sbjct: 139 KNVKRTMAGEYSRELSVKVHAGQMRLIQLGVRQGGPAGYGLRRMLIDHTGARKAELKPGE 198
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
KS+Q+DRVIL+ GP E + IY F+ TE +IA LN + LTDR T WT+G
Sbjct: 199 HKSIQTDRVILVPGPVEETDTVRWIYKAFVEDGLTESEIAALLNREGRLTDRGTAWTRGT 258
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
VHQILIN+KYVG NVWN++ + K + R +NP + W R +AF+ I+ + +FNAA+ II
Sbjct: 259 VHQILINDKYVGDNVWNRT-SFKLKEERVRNPPAAWARAADAFDPIVDRLIFNAARQIIL 317
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
RS +LTDEEML LR +L G LSG++IDE DCPSSSA++ RFGSLIRTY +I Y P
Sbjct: 318 ARSYRLTDEEMLAALRRVLLRHGYLSGIVIDETTDCPSSSAFAGRFGSLIRTYTLIGYTP 377
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSI-APNDLLKINEEFTASLVVSPCR 424
+RDY Y+EINR +R+ + IV +N + A G R+ + DLL++N EFT SL + CR
Sbjct: 378 DRDYRYLEINRRLRELHPSIVSDAMNAMTAAGARIDRNSTTDLLRVNGEFTVSLALCRCR 437
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
T G RW++RFDT L+PD+TIAVR+ DA++I DYYL P S +LRL + N
Sbjct: 438 TTNAGTNRWLVRFDTALKPDITIAVRMAPDAQSIRDYYLLPAIDVWSEQLRLGDYNEQGF 497
Query: 485 DIYRFSNLDRFFIMVERILL 504
D YR+ +L + R+ L
Sbjct: 498 DAYRYDDLSMLVYLGRRVPL 517
>gi|71735375|ref|YP_272411.1| recombinase [Pseudomonas syringae pv. phaseolicola 1448A]
gi|71555928|gb|AAZ35139.1| recombinase [Pseudomonas syringae pv. phaseolicola 1448A]
Length = 523
Score = 469 bits (1208), Expect = e-130, Method: Composition-based stats.
Identities = 237/491 (48%), Positives = 329/491 (67%), Gaps = 7/491 (1%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMST+HQ +S + Q I YA G+ + R Y DEG+SGL R LI+
Sbjct: 20 AAEYVRMSTDHQRYSTENQSAAIHAYATSHGMEIVRTYRDEGKSGLDIGGRDALRRLIDD 79
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGS---Q 123
VQ+GN F ILVYD+SRWGRF N DESAHYE +C+ GI+V YCAEPF+ ND GS
Sbjct: 80 VQAGNIQFQVILVYDVSRWGRFQNTDESAHYEYLCTSSGIQVVYCAEPFE-ND-GSPLAT 137
Query: 124 IFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKT 183
I+K +KR AGEY REL +KVF GQ L+E+GF QGGPAG+GLRR L+ K EL
Sbjct: 138 IYKGIKRSMAGEYSRELSQKVFAGQCRLVEKGFHQGGPAGYGLRRALIDEKNEFKAELSR 197
Query: 184 GDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTK 243
G +KS+Q+DRVIL+ GPE E +++ IYH FI+ ER+IA+ LNA +LTD + W++
Sbjct: 198 GQQKSIQTDRVILVPGPEAEIEVVQHIYHQFIHSGLNEREIANVLNADGLLTDFDRPWSR 257
Query: 244 GVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAI 303
G VHQ+L NEKY+G+NV+NK+ +SK K +NP +WVR + AF+ ++ +F A+ I
Sbjct: 258 GSVHQVLTNEKYIGNNVYNKT-SSKLRKRISRNPPDKWVRCDGAFQGVVSLEVFTCAREI 316
Query: 304 IHQRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHY 363
I QRS +L D +ML+ L LL+ G LSG++IDE ++ PSS+AY SRFG L+R Y ++ Y
Sbjct: 317 ILQRSYRLDDVQMLELLGALLQQAGSLSGMLIDEQDNMPSSAAYISRFGGLLRAYTLVGY 376
Query: 364 EPERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSI-APNDLLKINEEFTASLVVSP 422
P+RDY Y++INR +RQ + ++ + V+ + G V I A ND+L +N+E+TAS+V++
Sbjct: 377 APDRDYRYLDINRSLRQLHPQVFENVIKHLKLAGASVEISAQNDVLTVNDEWTASVVIAR 436
Query: 423 CRPTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPA 482
C+ T G RW +RFD L PD+TIAVR+++ + + DYYL P+ + ++AE N
Sbjct: 437 CQSTPAGTLRWKLRFDNSLAPDITIAVRMEQANQKVRDYYLVPLIDMGAWPQKMAEENSP 496
Query: 483 ELDIYRFSNLD 493
+D Y F+ LD
Sbjct: 497 LIDSYCFATLD 507
>gi|94496234|ref|ZP_01302812.1| putative recombinase [Sphingomonas sp. SKA58]
gi|94424413|gb|EAT09436.1| putative recombinase [Sphingomonas sp. SKA58]
Length = 506
Score = 468 bits (1204), Expect = e-130, Method: Composition-based stats.
Identities = 247/503 (49%), Positives = 321/503 (63%), Gaps = 4/503 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTEHQ++S + Q I +YA +G + + Y D G+SGL + R LI
Sbjct: 3 AAQYVRMSTEHQKYSTENQAEIIAQYAARRGFEIVKTYEDSGKSGLRLDGRLSLQQLIAD 62
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
V+ G DF ILVYD+SRWGRF + DESA+YE IC + GI V YCAE F+ + + + I
Sbjct: 63 VRGGQTDFKAILVYDVSRWGRFQDADESAYYEFICREAGIAVQYCAEQFENDGSLSATII 122
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K++KR AGEY REL KVF GQ LI GFRQGG AGFGLRR L+ PK L G+
Sbjct: 123 KSMKRAMAGEYSRELSVKVFTGQCRLIRLGFRQGGAAGFGLRRYLVDEHRQPKAVLNHGE 182
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
+KSLQ+DRV+L GP E +++ ++Y F+ + +TE +IA +LN + ILTD WT+G
Sbjct: 183 QKSLQTDRVVLRPGPPEEIEVVRRLYRMFVVQRRTETEIAAALNDEGILTDLGRPWTRGT 242
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
VHQ+L NEKY+G+NV+N++ K R N WVR + AFEAI+ + F AAQ II
Sbjct: 243 VHQVLTNEKYIGNNVYNRASFKLKAK-RVVNTPDMWVRGDGAFEAIVERDFFEAAQRIIQ 301
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
+RS + TDEE+L +L LL KG LSGL+IDE ED PSSS + RFGSL+R Y ++ Y P
Sbjct: 302 ERSRRFTDEELLGRLSALLVAKGWLSGLVIDEVEDMPSSSTFRHRFGSLVRAYQLVGYAP 361
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAP-NDLLKINEEFTASLVVSPCR 424
RDY Y+E NR +R + +V QV+ +I A GG V P DLL IN+EFTASLV+S C
Sbjct: 362 SRDYRYIETNRTLRTLHPDVVAQVIADIGAAGGTVRRDPVTDLLHINDEFTASLVISRCH 421
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFP-MKGRESNKLRLAESNPAE 483
+ G RW +RFD+GL P +TI R+ ED I DYYL P + + LRLA N
Sbjct: 422 ISPAGGLRWKVRFDSGLRPSITIVARMQEDNAAIHDYYLLPWLDVGATPNLRLAPENGIL 481
Query: 484 LDIYRFSNLDRFFIMVERILLGV 506
LD YRF L+ FF + R+ L V
Sbjct: 482 LDAYRFDTLEAFFDLTRRVPLKV 504
>gi|39935276|ref|NP_947552.1| putative recombinase [Rhodopseudomonas palustris CGA009]
gi|39649128|emb|CAE27648.1| putative recombinase [Rhodopseudomonas palustris CGA009]
Length = 522
Score = 468 bits (1203), Expect = e-130, Method: Composition-based stats.
Identities = 247/503 (49%), Positives = 321/503 (63%), Gaps = 4/503 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTEHQ++S + Q I +YA +G + + Y D G+SGL + R LI
Sbjct: 19 AAQYVRMSTEHQKYSTENQAEIIAQYAARRGFEIVKTYEDSGKSGLRLDGRLSLQQLIAD 78
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
V+ G DF ILVYD+SRWGRF + DESA+YE IC + GI V YCAE F+ + + + I
Sbjct: 79 VRGGQTDFKAILVYDVSRWGRFQDADESAYYEFICREAGIAVQYCAEQFENDGSLSATII 138
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K++KR AGEY REL KVF GQ LI GFRQGG AGFGLRR L+ PK L G+
Sbjct: 139 KSMKRAMAGEYSRELSVKVFTGQCRLIRLGFRQGGAAGFGLRRYLVDEHRQPKAVLNHGE 198
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
+KSLQ+DRV+L GP E +++ ++Y F+ + +TE +IA +LN + ILTD WT+G
Sbjct: 199 QKSLQTDRVVLRPGPPEEIEVVRRLYRMFVVQRRTETEIATALNDEGILTDLGRPWTRGT 258
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
VHQ+L NEKY+G+NV+N++ K R N WVR + AFEAI+ + F AAQ II
Sbjct: 259 VHQVLTNEKYIGNNVYNRASFKLKAK-RVVNTPDMWVRGDGAFEAIVERDFFEAAQRIIQ 317
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
+RS + TDEE+L +L LL KG LSGL+IDE ED PSSS + RFGSL+R Y ++ Y P
Sbjct: 318 ERSRRFTDEELLGRLSALLVEKGWLSGLVIDEVEDMPSSSTFRHRFGSLVRAYQLVGYAP 377
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAP-NDLLKINEEFTASLVVSPCR 424
RDY Y+E NR +R + +V QV+ +I A GG V P DLL IN+EFTASLV+S C
Sbjct: 378 SRDYRYIETNRTLRTLHPDVVAQVIADIGAAGGTVRRDPVTDLLHINDEFTASLVISRCH 437
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFP-MKGRESNKLRLAESNPAE 483
+ G RW +RFD+GL P +TI R+ ED I DYYL P + + LRLA N
Sbjct: 438 ISPAGGLRWKVRFDSGLRPSITIVARMQEDNAAIHDYYLLPWLDVGTTPNLRLAPENGIL 497
Query: 484 LDIYRFSNLDRFFIMVERILLGV 506
LD YRF L+ FF + R+ L V
Sbjct: 498 LDAYRFDTLEAFFDLTRRVPLKV 520
>gi|87198550|ref|YP_495807.1| Recombinase [Novosphingobium aromaticivorans DSM 12444]
gi|87134231|gb|ABD24973.1| Recombinase [Novosphingobium aromaticivorans DSM 12444]
Length = 524
Score = 465 bits (1197), Expect = e-129, Method: Composition-based stats.
Identities = 244/494 (49%), Positives = 327/494 (66%), Gaps = 7/494 (1%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMST+HQ++S + Q I+ YA +G+ + R Y D G+SGL E R LI+
Sbjct: 22 AAEYVRMSTDHQKYSTENQADAIRHYATPRGIEIVRTYADSGKSGLKLEGRDALKQLIDD 81
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFK--GNDIGSQI 124
VQ+G ADF+ +LVYDISRWGRF + DESA+YE IC + GI V YC E F+ G+ + + I
Sbjct: 82 VQTGVADFTMVLVYDISRWGRFQDADESAYYEYICKRAGIAVQYCTEQFENDGSPVSTMI 141
Query: 125 FKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTG 184
K VKR AGEY REL KVF GQ+ LIE G+RQGG AGFGLRR L+ G K L G
Sbjct: 142 -KGVKRAMAGEYSRELSAKVFAGQRRLIENGYRQGGAAGFGLRRTLVDERGETKGVLGRG 200
Query: 185 DRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKG 244
+ KS+Q+DRVIL GP+ E I+ ++Y F++ ++E IA+ LNA+ I+TD WT+G
Sbjct: 201 EHKSIQTDRVILTRGPDEEIAIVQEVYAAFVHGGQSESAIAEQLNARGIVTDLGRPWTRG 260
Query: 245 VVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAII 304
VHQ+LIN KYVG NVWN+ + K K R +N + W+R AFE I+ + LF+AAQ+II
Sbjct: 261 TVHQLLINGKYVGDNVWNRQ-SFKLKKKRVRNDPAMWIRSPGAFEEIVARDLFDAAQSII 319
Query: 305 HQRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYE 364
RS +L+D EM++ LR + + KG LSG+IIDE + PSSSAY SRFGSL+R Y+++ Y
Sbjct: 320 GARSFRLSDAEMIEALRKVYETKGTLSGIIIDECDGVPSSSAYLSRFGSLLRAYSLVGYS 379
Query: 365 PERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSI--APNDLLKINEEFTASLVVSP 422
P+RDY YVE+NR +R+ + ++ Q+VL E + G VS D + +N+EF+ S+V+
Sbjct: 380 PDRDYAYVEVNRELRRLHPEVTQKVL-EGLKCQGSVSWRDCTTDQIIVNDEFSLSVVIVR 438
Query: 423 CRPTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPA 482
C T G RW IRFDT PD+T+ VR+D + DYYLFP + +LRLAE N
Sbjct: 439 CTSTPTGLLRWKIRFDTSQMPDITLVVRMDTNNRQPFDYYLFPRLDVAAERLRLAEDNDL 498
Query: 483 ELDIYRFSNLDRFF 496
LD YRF NLD F+
Sbjct: 499 LLDAYRFENLDFFY 512
>gi|28867276|ref|NP_789895.1| recombinase, putative [Pseudomonas syringae pv. tomato str. DC3000]
gi|28867429|ref|NP_790048.1| recombinase, putative [Pseudomonas syringae pv. tomato str. DC3000]
gi|28850510|gb|AAO53590.1| recombinase, putative [Pseudomonas syringae pv. tomato str. DC3000]
gi|28850663|gb|AAO53743.1| recombinase, putative [Pseudomonas syringae pv. tomato str. DC3000]
Length = 518
Score = 463 bits (1191), Expect = e-128, Method: Composition-based stats.
Identities = 236/491 (48%), Positives = 324/491 (65%), Gaps = 7/491 (1%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMST+HQ +S + Q I YA G+ + + Y DEG+SGL R L++
Sbjct: 15 AAEYVRMSTDHQRYSTENQSAAIHAYALSHGMDIVKTYRDEGKSGLDIGGRDALRRLLDD 74
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGS---Q 123
VQ+GN F ILVYD+SRWGRF N DESAHYE +C+ GI+V YCAEPF+ ND GS
Sbjct: 75 VQAGNVQFQIILVYDVSRWGRFQNTDESAHYEYLCTSSGIQVVYCAEPFE-ND-GSPLAT 132
Query: 124 IFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKT 183
I+K +KR AGEY REL +KVF GQ L+E+GF QGGPAG+GLRR L+ K EL
Sbjct: 133 IYKGIKRSMAGEYSRELSQKVFAGQCRLVEKGFHQGGPAGYGLRRALIDEKNEFKAELSR 192
Query: 184 GDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTK 243
G +KS+Q+DRVILI GPE E +I+ IYH FI+ ER+IA++LNA +LTD + W++
Sbjct: 193 GQQKSIQTDRVILIPGPEAEIEIVQHIYHRFIHNGMNEREIANALNADGVLTDFDRPWSR 252
Query: 244 GVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAI 303
VH++L NEKY+G+NV+NK+ +SK K +NP +W+R + AF+ I+ +F A+ I
Sbjct: 253 SSVHEVLTNEKYIGNNVYNKT-SSKLRKRSSRNPPDKWIRCDGAFQGIVSLEVFTCAREI 311
Query: 304 IHQRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHY 363
I QRS +L D +ML+ LR LL+ G LSG++IDE ++ PSS+ Y SRFG L+R Y +I Y
Sbjct: 312 ILQRSHRLDDTQMLELLRALLQQAGSLSGMLIDEQDNMPSSTVYISRFGGLLRAYTLIGY 371
Query: 364 EPERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSI-APNDLLKINEEFTASLVVSP 422
P+RDY Y++INR +RQ + ++ + V+ + G V I A ND+L +N E+TAS+V++
Sbjct: 372 APDRDYRYMDINRSLRQLHPQVFEDVIKHLENAGASVEISAQNDVLTVNGEWTASVVIAR 431
Query: 423 CRPTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPA 482
C T G RW +RFD L PD+TIAVR++ + DYYL P+ + ++AE N
Sbjct: 432 CHSTPAGTLRWKLRFDISLAPDITIAVRMERANLQVRDYYLVPLIDMGAWPQKMAEENSP 491
Query: 483 ELDIYRFSNLD 493
+D Y F LD
Sbjct: 492 LIDSYCFQTLD 502
>gi|124262730|ref|YP_001023200.1| putative recombinase [Methylibium petroleiphilum PM1]
gi|124266386|ref|YP_001020390.1| putative recombinase [Methylibium petroleiphilum PM1]
gi|124259161|gb|ABM94155.1| putative recombinase [Methylibium petroleiphilum PM1]
gi|124261976|gb|ABM96965.1| putative recombinase [Methylibium petroleiphilum PM1]
Length = 521
Score = 461 bits (1186), Expect = e-128, Method: Composition-based stats.
Identities = 240/494 (48%), Positives = 322/494 (65%), Gaps = 3/494 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTEHQ++S + Q I++YA +G+ + Y DEG+SGL + R LI+
Sbjct: 19 AAEYVRMSTEHQQYSTENQGDKIREYAARRGIEIVATYADEGKSGLRIDGRQALQRLIHD 78
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIG-SQIF 125
V++ ADF ILVYD+SRWGRF + DESA+YE IC + GI+V YCAE F+ + S I
Sbjct: 79 VENKRADFQIILVYDVSRWGRFQDADESAYYEYICRRAGIQVAYCAEQFENDGSPVSTIV 138
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K VKR AGEY REL KVF GQ LIE GFRQGGPAG+GLRR L+ G+ K EL G+
Sbjct: 139 KGVKRAMAGEYSRELSAKVFAGQCRLIELGFRQGGPAGYGLRRTLVDVQGAAKTELSRGE 198
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
+KSLQ+DRVIL GPE E +I+ QIY FI E +IA LN + TD WT+
Sbjct: 199 QKSLQTDRVILTPGPEEEVRIVNQIYRWFIDDGLVESEIAGRLNGMRLRTDLGREWTRAT 258
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
VH++L NEKYVGHN++N+ + K K+R NP W+R E AF I+P +F AQ II
Sbjct: 259 VHEVLTNEKYVGHNIYNR-VSFKLKKVRVVNPPDMWIRREGAFTGIVPPDVFYTAQGIIR 317
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
R+ + TDEE++++LR L + +G LSGL+I+EAE P ++ Y+ RFGSL+R Y ++ Y P
Sbjct: 318 ARARRYTDEELIERLRGLYRNRGFLSGLVINEAEGMPCAAVYAHRFGSLVRAYQLVGYTP 377
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAP-NDLLKINEEFTASLVVSPCR 424
+RDY YVEINR +R+ + +VQQ+ EI LGG P D+L +N EFT S+V++ C
Sbjct: 378 DRDYRYVEINRQLRRMHPDLVQQIEREIANLGGSFERDPATDVLWVNREFTVSIVLARCH 437
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
G+ RW IR DT L PD+++A RLD+ + + D+YL P +++ LAE N AEL
Sbjct: 438 AVDSGHNRWKIRLDTSLAPDISVAARLDDGNQAVRDFYLLPRVDFGPSRISLAEQNTAEL 497
Query: 485 DIYRFSNLDRFFIM 498
+ YRF LD + M
Sbjct: 498 ESYRFETLDYLYGM 511
>gi|27375986|ref|NP_767515.1| recombinase [Bradyrhizobium japonicum USDA 110]
gi|27349125|dbj|BAC46140.1| recombinase [Bradyrhizobium japonicum USDA 110]
Length = 522
Score = 459 bits (1180), Expect = e-127, Method: Composition-based stats.
Identities = 243/497 (48%), Positives = 323/497 (64%), Gaps = 5/497 (1%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A AY+RMST+HQ++S + Q I++YA +G + + D GRSGL + R L++
Sbjct: 22 AAAYVRMSTDHQKYSTENQLETIERYAANRGFRIVETFEDSGRSGLRVDGREGLQRLMHE 81
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
VQ+G A FS ILVYD+SRWGRF + DE A+YE +CS+ GI+VHYC E F + IGS +
Sbjct: 82 VQTGQAAFSAILVYDVSRWGRFQDADEGAYYEYVCSRAGIRVHYCGEQFDNDGSIGSVLL 141
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K+VKR AGEY REL KVF GQ L+E GFRQGGPAGFGLRR L+ + PK L GD
Sbjct: 142 KSVKRVMAGEYSRELSVKVFAGQCRLVELGFRQGGPAGFGLRRQLIDENRVPKAMLSRGD 201
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
RKSLQ+DRV+L GP E + + IY F+ + +E +IA LN LTD WT+
Sbjct: 202 RKSLQTDRVVLTLGPVEEVEGVRLIYQMFVEQGLSENEIATRLNLAGTLTDLGRPWTRAS 261
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
VHQIL NEKY+G+NV+N+ + K + R N WVR E AF + + LF A+AII
Sbjct: 262 VHQILTNEKYIGNNVFNR-VSFKLKQKRVVNSPDTWVRAEAAFPPAVSRELFERARAIID 320
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
RS +DEE+L L+ +LK +G LSGLIIDE ED PS+SAY RFGSLIR Y++I Y P
Sbjct: 321 TRSAHYSDEELLALLQEVLKDEGYLSGLIIDEREDMPSASAYRHRFGSLIRAYSLIGYIP 380
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAPNDLLKINEEFTASLVVS-PCR 424
+RDY Y+E+NR +R + IV +L GGR+++ N LL IN++FTA++V++ C
Sbjct: 381 DRDYSYIEVNRRIRDTHPAIVTTILRGFELAGGRIAVDQNQLLTINDQFTAAVVIARAC- 439
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
+ G RW +RFDT L PDLTIAVRL I+DYY+FP +++L+LA+ N +L
Sbjct: 440 -ISGGGYRWHVRFDTSLVPDLTIAVRLSTSNSEILDYYVFPWLDLTASRLKLAQDNALQL 498
Query: 485 DIYRFSNLDRFFIMVER 501
D YRF LD + + +
Sbjct: 499 DAYRFDALDSLYALARQ 515
>gi|83748935|ref|ZP_00945944.1| Site-specific recombinases [Ralstonia solanacearum UW551]
gi|83724358|gb|EAP71527.1| Site-specific recombinases [Ralstonia solanacearum UW551]
Length = 521
Score = 458 bits (1179), Expect = e-127, Method: Composition-based stats.
Identities = 244/500 (48%), Positives = 320/500 (64%), Gaps = 3/500 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTEHQ++S QR I++YA +G+ + R Y DEG+SGL + R SLI
Sbjct: 19 AAEYVRMSTEHQQYSTQNQRDKIREYAASRGIEVVRTYADEGKSGLRIDGREALQSLIRD 78
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIG-SQIF 125
V +G ADF ILVYD+SRWGRF + DESA+YE IC + GI+V YCAE F + S I
Sbjct: 79 VTNGRADFQAILVYDVSRWGRFQDADESAYYEYICRRAGIQVIYCAEQFDNDGSPVSTIV 138
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K VKR AGEY REL KVF GQ LIE GFRQGGPAG+GLRR+L+ G K EL G
Sbjct: 139 KGVKRAMAGEYSRELSAKVFAGQCRLIELGFRQGGPAGYGLRRMLVDEHGLVKAELCRGQ 198
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
RKSLQ+DRV+L+ GPE E +I+ +Y FI E +IA LN+ TD + WT+
Sbjct: 199 RKSLQTDRVVLVPGPESEVRIVNLVYSWFIDESLNEFEIAARLNSMHARTDLDRDWTRAT 258
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
V ++L NEKY+G+N++N+ + K + R N W+R + AFE I+ +F AQ II
Sbjct: 259 VREVLTNEKYIGNNIYNR-VSYKLARARVVNAPEMWIRKDGAFEPIVAPDMFYTAQGIIR 317
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
R+ + + EE++++LR L + +G LSGLIIDE E PSS+AY+ RFGSLIR Y + + P
Sbjct: 318 ARARRYSSEELIERLRNLYRNRGFLSGLIIDETEGMPSSAAYAYRFGSLIRAYQAVGFTP 377
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAP-NDLLKINEEFTASLVVSPCR 424
+RDY Y+EINR +RQ + KIV Q I LGG V P D+L +N+EFT SLV+S C+
Sbjct: 378 DRDYRYLEINRFLRQLHPKIVSQAEQAIADLGGTVLRDPATDILDVNQEFTVSLVLSRCQ 437
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
P G W +RFDT L PD+T+A+RL++ + +DYYL P +RLAE N E
Sbjct: 438 PRPNGGYHWKVRFDTSLLPDVTVAIRLNKANDAPLDYYLLPRLDFARPGIRLAERNAIEY 497
Query: 485 DIYRFSNLDRFFIMVERILL 504
+ YRF LD + M ER L
Sbjct: 498 ESYRFDTLDYLYHMAERAKL 517
>gi|126733934|ref|ZP_01749681.1| Site-specific recombinase [Roseobacter sp. CCS2]
gi|126716800|gb|EBA13664.1| Site-specific recombinase [Roseobacter sp. CCS2]
Length = 497
Score = 458 bits (1178), Expect = e-127, Method: Composition-based stats.
Identities = 234/491 (47%), Positives = 321/491 (65%), Gaps = 3/491 (0%)
Query: 13 MSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQSGNA 72
MSTEHQ +S + Q I YA+++G + + Y D G+SGL E R L+N +Q+G
Sbjct: 1 MSTEHQRYSTENQSDAISIYAEQRGYRIVKTYSDAGKSGLRIEGRDGLTQLLNDIQAGKT 60
Query: 73 DFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIG-SQIFKAVKRW 131
DF+ +LVYDISRWGRF + DE A+YE +C + GI V YCAE F+ + S I K VKR
Sbjct: 61 DFNTVLVYDISRWGRFQDADEGAYYEFVCKRAGISVEYCAEQFENDGTPVSTIVKGVKRA 120
Query: 132 SAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRKSLQS 191
AGEY REL +KVF GQ LIE G+RQGGP G+GLRR+L+ G+ K L G+ KS+Q+
Sbjct: 121 MAGEYSRELSQKVFAGQSRLIEMGYRQGGPPGYGLRRMLIDETGNQKGILVRGEHKSIQT 180
Query: 192 DRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVHQILI 251
DRV L+ GP+ E I+ QI+ +F+ +++E IA LN++ I TD + WT VV Q+L
Sbjct: 181 DRVTLVPGPDDEIAIVNQIFRNFVDDNQSEAMIAADLNSKGIKTDLDRDWTPAVVRQLLS 240
Query: 252 NEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIHQRSIKL 311
NEKY+G+N+WN+S + K K N WVR E AFEAI+ LF AA+AI ++ +
Sbjct: 241 NEKYIGNNIWNRS-SFKLKKRHVHNSPDSWVRSEGAFEAIVDAGLFAAAKAIFATKAQRY 299
Query: 312 TDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEPERDYHY 371
+DEEMLD LR L++ G LSG++I+EA PSS AY SRFGSL+R Y ++ + P+RDY Y
Sbjct: 300 SDEEMLDGLRDALEMHGFLSGIVINEASALPSSGAYQSRFGSLLRAYKLVGFTPDRDYRY 359
Query: 372 VEINRLMRQQYKKIVQQVLNEIIALGGRVSIA-PNDLLKINEEFTASLVVSPCRPTTRGN 430
+EIN+ +R+ + +I+ + + I +GG V LL +N+EF+AS+V++ C T G
Sbjct: 360 IEINKRLRKMHAEIIHETVGGIEQVGGLVKHGTKTSLLTMNDEFSASVVIARCTQTGAGA 419
Query: 431 KRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAELDIYRFS 490
RW IR DTGL PD+T+ VR+D+ E +DYYL P +KLRL+ESN LD YR
Sbjct: 420 YRWNIRLDTGLLPDITVVVRMDQANETPLDYYLLPTVDMTRSKLRLSESNGLSLDAYRLD 479
Query: 491 NLDRFFIMVER 501
+L +FF M ER
Sbjct: 480 DLTKFFTMCER 490
>gi|16119269|ref|NP_395975.1| hypothetical protein AGR_pAT_54 [Agrobacterium tumefaciens str.
C58]
gi|15161773|gb|AAK90416.1| AGR_pAT_54p [Agrobacterium tumefaciens str. C58]
Length = 518
Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats.
Identities = 241/498 (48%), Positives = 320/498 (64%), Gaps = 3/498 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTEHQ++S + Q I KYA+E ++ + Y+D G+SGL + R SLI
Sbjct: 16 AAQYVRMSTEHQKYSTENQAIEIAKYARENDYVIVKTYMDSGKSGLKLDGRDALQSLIED 75
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
V +G DFS ILVYD+SRWGRF N DESA+ E +C++ GI V YCAE F + + + I
Sbjct: 76 VSNGQTDFSIILVYDVSRWGRFQNADESAYLEYLCTRAGIAVEYCAEQFANDGSLTTTII 135
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K +KR AGEY R+L KVF GQ++L+E G+RQGG AGFGLRR L+ G PK L G+
Sbjct: 136 KNMKRAMAGEYSRDLSRKVFEGQRHLVELGYRQGGTAGFGLRRQLIDERGEPKALLAHGE 195
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
RKS+Q+DRVIL+ GP E ++ +IY F+ + + E IA LN++ + TD WT+G
Sbjct: 196 RKSIQTDRVILVPGPATEVAVVDRIYRLFVEKGQNECSIAGILNSENLFTDMGRPWTRGT 255
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
VHQ+L NEKYVG+NV+N+ + K R +NP +R F+ I+ + LF A AII
Sbjct: 256 VHQVLTNEKYVGNNVFNR-ISFKLKMRRVRNPPDAIIRASGVFQPIVSKDLFQRAAAIIA 314
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
+R+++L D+EML L LL GKLS +IIDE E PSSS Y SRFGSL+R Y +I Y P
Sbjct: 315 ERTVRLRDDEMLALLAQLLLKSGKLSAIIIDEQEGMPSSSIYGSRFGSLLRAYKLIGYTP 374
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGR-VSIAPNDLLKINEEFTASLVVSPCR 424
+RDY YVEINRL+R + ++ ++ + GGR + A DLLK+N EFT S+VV C
Sbjct: 375 DRDYRYVEINRLLRSLFPDVLSGIIAAVEHAGGRIIRDAATDLLKVNGEFTVSVVVCRCI 434
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
T GN RW IR D GL PDL+IAVR+ E I+DYYL P S L +AE N +
Sbjct: 435 ETPAGNLRWKIRLDNGLHPDLSIAVRMAPGNEKILDYYLLPAIDFASANLAVAEDNAIGI 494
Query: 485 DIYRFSNLDRFFIMVERI 502
D YR ++L RF + ER+
Sbjct: 495 DAYRCADLSRFIRLTERV 512
>gi|17938630|ref|NP_535418.1| recombinase [Agrobacterium tumefaciens str. C58]
gi|17743465|gb|AAL45734.1| recombinase [Agrobacterium tumefaciens str. C58]
Length = 505
Score = 457 bits (1176), Expect = e-127, Method: Composition-based stats.
Identities = 241/498 (48%), Positives = 320/498 (64%), Gaps = 3/498 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTEHQ++S + Q I KYA+E ++ + Y+D G+SGL + R SLI
Sbjct: 3 AAQYVRMSTEHQKYSTENQAIEIAKYARENDYVIVKTYMDSGKSGLKLDGRDALQSLIED 62
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
V +G DFS ILVYD+SRWGRF N DESA+ E +C++ GI V YCAE F + + + I
Sbjct: 63 VSNGQTDFSIILVYDVSRWGRFQNADESAYLEYLCTRAGIAVEYCAEQFANDGSLTTTII 122
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K +KR AGEY R+L KVF GQ++L+E G+RQGG AGFGLRR L+ G PK L G+
Sbjct: 123 KNMKRAMAGEYSRDLSRKVFEGQRHLVELGYRQGGTAGFGLRRQLIDERGEPKALLAHGE 182
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
RKS+Q+DRVIL+ GP E ++ +IY F+ + + E IA LN++ + TD WT+G
Sbjct: 183 RKSIQTDRVILVPGPATEVAVVDRIYRLFVEKGQNECSIAGILNSENLFTDMGRPWTRGT 242
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
VHQ+L NEKYVG+NV+N+ + K R +NP +R F+ I+ + LF A AII
Sbjct: 243 VHQVLTNEKYVGNNVFNR-ISFKLKMRRVRNPPDAIIRASGVFQPIVSKDLFQRAAAIIA 301
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
+R+++L D+EML L LL GKLS +IIDE E PSSS Y SRFGSL+R Y +I Y P
Sbjct: 302 ERTVRLRDDEMLALLAQLLLKSGKLSAIIIDEQEGMPSSSIYGSRFGSLLRAYKLIGYTP 361
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGR-VSIAPNDLLKINEEFTASLVVSPCR 424
+RDY YVEINRL+R + ++ ++ + GGR + A DLLK+N EFT S+VV C
Sbjct: 362 DRDYRYVEINRLLRSLFPDVLSGIIAAVEHAGGRIIRDAATDLLKVNGEFTVSVVVCRCI 421
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
T GN RW IR D GL PDL+IAVR+ E I+DYYL P S L +AE N +
Sbjct: 422 ETPAGNLRWKIRLDNGLHPDLSIAVRMAPGNEKILDYYLLPAIDFASANLAVAEDNAIGI 481
Query: 485 DIYRFSNLDRFFIMVERI 502
D YR ++L RF + ER+
Sbjct: 482 DAYRCADLSRFIRLTERV 499
>gi|118714161|ref|ZP_01566721.1| Recombinase [Burkholderia cenocepacia MC0-3]
gi|118648409|gb|EAV55214.1| Recombinase [Burkholderia cenocepacia MC0-3]
Length = 537
Score = 454 bits (1169), Expect = e-126, Method: Composition-based stats.
Identities = 241/500 (48%), Positives = 317/500 (63%), Gaps = 3/500 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTEHQ++S + QR I+ YA +GL + R Y DEG+SGL + R LI
Sbjct: 35 AAEYVRMSTEHQQYSTENQRDRIRDYAARRGLEIVRTYADEGKSGLRIDGRQALQQLIRD 94
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIG-SQIF 125
V++G ADF ILVYD+SRWGRF + DESA+YE IC + GI+V YCAE F+ + S I
Sbjct: 95 VETGMADFQVILVYDVSRWGRFQDADESAYYEYICRRAGIQVAYCAEQFENDGSPVSTIV 154
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K VKR AGEY REL KVF GQ LIE GFRQGGPAG+GLRR+L+ G K EL+ G
Sbjct: 155 KGVKRAMAGEYSRELSAKVFAGQCRLIELGFRQGGPAGYGLRRILVDEHGLMKGELQRGQ 214
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
K LQ+DRVIL+ GPE E +I+ IY+ FI E +IA LN + TD WT+
Sbjct: 215 HKCLQTDRVILMPGPEREVRIVNLIYNWFIDESLNEHEIAARLNGMNVQTDLGRPWTRAT 274
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
+ ++L NEKY+G+NV+N+ + K K R NP W+R E AFE+I+P F AQ I+
Sbjct: 275 IREVLTNEKYIGNNVYNR-VSFKLKKSRVTNPSEMWIRKEGAFESIVPSETFYTAQGIMR 333
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
R+ + + EE++++LR L + +G LSG++IDE E PS+S Y RFGSLIR Y + + P
Sbjct: 334 ARARRYSSEELIERLRNLYRSRGFLSGVVIDETEGMPSTSVYVYRFGSLIRAYQTVGFTP 393
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAP-NDLLKINEEFTASLVVSPCR 424
RDY Y+E NR +RQ + +IV + +I LGG VS P DLL +N EFTA +V+S C+
Sbjct: 394 GRDYRYIETNRFIRQLHPEIVAETEKKIADLGGSVSRDPATDLLTVNREFTACIVLSRCQ 453
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
G W +RFDT L PD+T+AVRLD +DYYL P ++ LA+ NP E
Sbjct: 454 VRGSGRNHWKVRFDTSLLPDVTVAVRLDRSNSMALDYYLLPRIDFWQPRINLADWNPIEF 513
Query: 485 DIYRFSNLDRFFIMVERILL 504
+ YRF LD + M +R L
Sbjct: 514 ESYRFDTLDYLYGMAQRARL 533
>gi|83719315|ref|YP_440635.1| recombinase [Burkholderia thailandensis E264]
gi|83653140|gb|ABC37203.1| recombinase [Burkholderia thailandensis E264]
Length = 521
Score = 453 bits (1165), Expect = e-125, Method: Composition-based stats.
Identities = 235/500 (47%), Positives = 318/500 (63%), Gaps = 3/500 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTEHQ++S + QR I+ YA +G + R Y DEG+SGL + R +LI+
Sbjct: 19 AAEYVRMSTEHQQYSTENQRDRIRDYATRRGFDIVRTYADEGKSGLRIDGRQALQNLISD 78
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIG-SQIF 125
V +G ADF ILVYD+SRWGRF + DESA+YE IC + GI+V YCAE F+ + S I
Sbjct: 79 VTNGKADFCIILVYDVSRWGRFQDADESAYYEYICRRAGIQVAYCAEQFENDGSPVSTIV 138
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K VKR AGEY REL KVF GQ LIE GFRQGGPAG+GLRR+L+ G K EL G+
Sbjct: 139 KGVKRAMAGEYSRELSAKVFAGQCRLIEMGFRQGGPAGYGLRRVLVDEHGLMKAELHRGE 198
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
KSLQ+DRV+L+ GPE E +I+ IY+ FI E +IA LN + TD WT+
Sbjct: 199 HKSLQTDRVVLMPGPESEVRIVNLIYNWFIDESLDEYEIAARLNGMNVRTDLGREWTRAT 258
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
V ++L NEKY+G+NV+N+ + K K+R N W+R E AF+AI+P F AQ I+
Sbjct: 259 VREVLTNEKYIGNNVYNR-VSFKLKKMRVMNTPDMWIRKEGAFQAIVPSETFYTAQGIMR 317
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
R+ ++EE++++LR L + +G LSG++IDE + PS+S Y RFGSLIR Y + + P
Sbjct: 318 ARARHYSNEELIERLRNLYRARGFLSGVVIDETDGMPSTSVYVYRFGSLIRAYQTVGFTP 377
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGR-VSIAPNDLLKINEEFTASLVVSPCR 424
RDY Y+E NR +R+ + +IV Q +I LGG + DLL +N+EFT +V++ C+
Sbjct: 378 GRDYRYIETNRFLRKLHPEIVAQTEKKIADLGGTMIRDTATDLLTVNDEFTVCIVLARCQ 437
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
G W +RFDT L PD+T+AVRLD+ + +DYYL P ++ LA+ NP E
Sbjct: 438 AHGNGRNHWKVRFDTSLLPDITVAVRLDQANASTLDYYLLPRLDFGQPRIHLADQNPIEF 497
Query: 485 DIYRFSNLDRFFIMVERILL 504
+ YRF LD + M ER L
Sbjct: 498 ESYRFDTLDYLYGMAERARL 517
>gi|124268166|ref|YP_001022170.1| putative recombinase [Methylibium petroleiphilum PM1]
gi|124260941|gb|ABM95935.1| putative recombinase [Methylibium petroleiphilum PM1]
Length = 521
Score = 447 bits (1150), Expect = e-124, Method: Composition-based stats.
Identities = 233/497 (46%), Positives = 319/497 (64%), Gaps = 3/497 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTEHQ++S + Q I++YA +G+ + + Y DEG+SGL + R SLI
Sbjct: 19 AAEYVRMSTEHQQYSTENQADKIREYAVRRGIDIIKTYADEGKSGLRIDGRQALQSLIRD 78
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIG-SQIF 125
V++G ADF ILVYD+SRWGRF + DESA+YE IC + GI+V YCAE F+ + S I
Sbjct: 79 VEAGTADFDIILVYDVSRWGRFQDADESAYYEYICRRAGIQVAYCAEQFENDGSPVSTIV 138
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K VKR AGEY REL KVF GQ LIE G+RQGGPAG+GLRR L+ G K EL G+
Sbjct: 139 KGVKRAMAGEYSRELSAKVFAGQCRLIELGYRQGGPAGYGLRRTLVDVKGEVKAELSRGE 198
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
KSLQ+DRVIL GP+ E I+ QIY FI E +IA LN + TD + WT+
Sbjct: 199 HKSLQTDRVILRPGPDEEVTIVNQIYRWFIDDGMYESEIAGRLNGMRVRTDLDREWTRAT 258
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
V ++L NEKYVGHNV+N+ + K KLR NP W+R + AF ++P +F AQ II
Sbjct: 259 VREVLTNEKYVGHNVYNR-VSFKLKKLRVVNPPEMWIRRDAAFPGVVPPDVFYTAQGIIR 317
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
R+ + T+EE++++LR L + +G LSG++I+E ED P ++ Y+ RFGSL+R Y ++ + P
Sbjct: 318 ARAHRYTNEELIERLRGLYRNRGFLSGVVINETEDMPCAAVYAHRFGSLVRAYQLVGFTP 377
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSI-APNDLLKINEEFTASLVVSPCR 424
+RDY YVEINR +R+ + +++Q+ +I LGG V A D+L +N EFT S+V++ C
Sbjct: 378 DRDYRYVEINRALRRMHPDVLRQIEGQIAGLGGIVQRDAATDVLIVNGEFTVSIVLARCH 437
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
RW IR D+ L PD+++A RL+ + + DYYL P S+ + LAE N AE
Sbjct: 438 EAAGMPNRWKIRLDSSLAPDISVAARLESGNQAVRDYYLLPKVDIGSSNISLAERNAAEF 497
Query: 485 DIYRFSNLDRFFIMVER 501
+ YRF LD + M R
Sbjct: 498 ESYRFETLDYLYGMAAR 514
>gi|144897917|emb|CAM74781.1| Recombinase [Magnetospirillum gryphiswaldense MSR-1]
Length = 497
Score = 422 bits (1084), Expect = e-116, Method: Composition-based stats.
Identities = 226/494 (45%), Positives = 309/494 (62%), Gaps = 3/494 (0%)
Query: 13 MSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQSGNA 72
MSTEHQ++S + Q I YA+ GL + R Y DEG SGL ++R SLI G A
Sbjct: 1 MSTEHQQYSTENQADAIAHYAERHGLEIVRTYADEGISGLQLDRREALQSLIADATQGRA 60
Query: 73 DFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIFKAVKRW 131
D+ +LVYD+SR+GRF + DESA+YE +C K GI+V YCAE F + + S I K ++R
Sbjct: 61 DYDMLLVYDVSRFGRFQDTDESAYYEYLCKKAGIRVEYCAEQFVNDGSMPSSILKMIRRS 120
Query: 132 SAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRKSLQS 191
AG+Y R+L KVF GQ LI G+RQGGPAG+GLRR+ + G+ L+ G K LQ+
Sbjct: 121 QAGDYSRDLSVKVFAGQCRLIRMGYRQGGPAGYGLRRMRIDQTGAELGLLERGQHKCLQT 180
Query: 192 DRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVHQILI 251
DRVIL GPE E + + +IY F+ + + E +IA LNA+ I+TD W VHQ+L
Sbjct: 181 DRVILKPGPENEIQTVQRIYRLFVDKGRREGEIAALLNAEGIVTDLGRPWRASTVHQVLT 240
Query: 252 NEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIHQRSIKL 311
NEKY+G+NV+N+ + K R +NP +W+R E F I+ + AAQAII +RS +
Sbjct: 241 NEKYIGNNVFNRR-SFKLKAQRVRNPPEEWIRAEGVFTPIVDIQDYRAAQAIIVERSRRF 299
Query: 312 TDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEPERDYHY 371
+DEE+L+ L+ L G LS ++IDE PSS A RFGSL+R YA+I Y+P RDY Y
Sbjct: 300 SDEEILNHLKALHARHGLLSAIVIDETHHGPSSGAIRHRFGSLLRAYALIGYDPGRDYAY 359
Query: 372 VEINRLMRQQYKKIVQQVLNEIIALGGRVSIA-PNDLLKINEEFTASLVVSPCRPTTRGN 430
+E NR +R+ + +V+ L I LGG+ + L+ +NEEF+ SLV++ C T G
Sbjct: 360 IEDNRHLRRMFPTVVEDTLRRIRDLGGKTRRELESGLVVVNEEFSLSLVIARCETTKAGA 419
Query: 431 KRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAELDIYRFS 490
RW IR +TGL PD+++AVR+ +I+DYYL P KLRLAE N LD YRF+
Sbjct: 420 HRWTIRLETGLLPDISVAVRMAPGNRDILDYYLLPAIDMNVAKLRLAEDNGIGLDAYRFT 479
Query: 491 NLDRFFIMVERILL 504
+L+R F + RI L
Sbjct: 480 SLERLFDLTRRIAL 493
>gi|153947997|ref|YP_001399756.1| site-specific recombinase, resolvase family [Yersinia
pseudotuberculosis IP 31758]
gi|152959492|gb|ABS46953.1| site-specific recombinase, resolvase family [Yersinia
pseudotuberculosis IP 31758]
Length = 519
Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats.
Identities = 213/500 (42%), Positives = 312/500 (62%), Gaps = 7/500 (1%)
Query: 6 LAVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
LA Y+RMSTEHQ++S D Q +I++Y+ + + Y D G+SGL+ RP +L++
Sbjct: 14 LAAEYVRMSTEHQKYSLDNQSEYIREYSLRNNITIIHTYNDAGKSGLNISGRPGLKALLD 73
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
V + S ILVYD+SR+GRF + DE+ HY + K G+K+ YCAEPF ++ ++F
Sbjct: 74 DVINKKITISAILVYDVSRFGRFQDADEAGHYSHLLRKNGVKIIYCAEPF--SEEHPEMF 131
Query: 126 K---AVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELK 182
+ R A Y R L EKVF GQ NLI+RG+ QGG AG+GLRRLL+ PK L+
Sbjct: 132 MLGLSFSRHGAASYSRNLSEKVFLGQVNLIKRGYHQGGVAGYGLRRLLIDEHHVPKGILE 191
Query: 183 TGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWT 242
G RKS+Q+DR+IL GP E I+ +I+ F K E IA LN + + +WT
Sbjct: 192 FGQRKSIQTDRIILSPGPLEEINIVNKIFDMFNLEGKPEIVIATELNRTNVFAENGNKWT 251
Query: 243 KGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQA 302
+G +HQIL NEKY+G++++NK+ + K + NPE +WVR A+E II FN AQ
Sbjct: 252 RGKIHQILTNEKYIGNSIYNKT-SFKLKQRHVNNPEDEWVRFNGAYEPIISIDKFNLAQE 310
Query: 303 IIHQRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIH 362
II R + TD+E+L+KL LL +G+LSG+IIDE E PSSS Y SRFGSL+R Y++I
Sbjct: 311 IIASRMVIFTDDELLEKLSILLIKRGRLSGIIIDEEELLPSSSTYRSRFGSLLRVYSLIG 370
Query: 363 YEPERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAPND-LLKINEEFTASLVVS 421
Y P +DY Y+E N++++ + +++ ++ I G VS +P + +L IN+EFT S+ ++
Sbjct: 371 YNPRQDYTYLETNKVLKGFHSSVIETIIENIYKSNGWVSDSPTEGILNINDEFTLSVNLA 430
Query: 422 PCRPTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNP 481
C+ + + RW IRF+ PD++IA+R+D ++ IDYY+FP N L L E N
Sbjct: 431 RCQRLSGNSLRWKIRFNHLSVPDISIAIRMDSLNKSPIDYYIFPSIDEVYNHLSLKEKNT 490
Query: 482 AELDIYRFSNLDRFFIMVER 501
L++Y F+ L+ F+ +V R
Sbjct: 491 FGLELYNFNTLNPFYHLVRR 510
>gi|118744247|ref|ZP_01592242.1| Recombinase [Geobacter lovleyi SZ]
gi|118682776|gb|EAV89180.1| Recombinase [Geobacter lovleyi SZ]
Length = 534
Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats.
Identities = 224/514 (43%), Positives = 315/514 (61%), Gaps = 12/514 (2%)
Query: 10 YIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQS 69
YIRMSTE Q SP+ Q R I+ YA E G+ + + Y D G SG++ EKR QF +LI+ V+
Sbjct: 23 YIRMSTEMQVESPENQERAIRAYAAEYGIEIIKTYADLGVSGINTEKREQFQALIDDVEQ 82
Query: 70 GNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFK-GNDIGSQIFKAV 128
G ++ +L D SRWGRF++ E+ ++ + + C +P +++ +I +
Sbjct: 83 GRNGYNIVLYLDESRWGRFVDSREAEYHRMRLERRNVVCQSCEKPVTLTSNLADRIMTLL 142
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRKS 188
+ SA +YCR+L +KV+ GQ NL+ +GFRQGG AGFGLRR+LL G PK EL G RKS
Sbjct: 143 RDESASDYCRQLSQKVWAGQCNLVSKGFRQGGVAGFGLRRMLLDEAGRPKQELAMGQRKS 202
Query: 189 LQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVHQ 248
L ++RVIL+ GPE E + +L IY FI +E IA LN Q + T W++G V +
Sbjct: 203 LLTERVILMPGPEEECRTVLWIYDQFI-AGSSETYIATQLNEQGVKTHFGRPWSRGTVCE 261
Query: 249 ILINEKYVGHNVWNKSCTSKTGKLRGK-NPESQWVRVENAFEAIIPQPLFNAAQAIIHQR 307
+L NEKYVG+N++N+ TS K R K NPE++WVR ++AFE ++ F Q I +R
Sbjct: 262 VLTNEKYVGNNLFNR--TSGKMKSRAKPNPENEWVRKDHAFEPVVDLERFYIVQGIYRER 319
Query: 308 SIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEPER 367
+ K TDEE+L LR L +G+LS LIIDEA+ P S +RFG L+R Y MI Y P+R
Sbjct: 320 NKKATDEELLQGLRDLYASQGRLSALIIDEADFLPPCSLIRNRFGGLLRVYQMIGYTPKR 379
Query: 368 DYHYVEINRLMRQQYKKIVQQVLNEIIAL-GGRVSIAPND-LLKINEEFTASLVVSPCRP 425
DY YV IN+ +R + +IV V+ +I L G R+ IAP LL++N S+V+S C
Sbjct: 380 DYQYVAINQRLRALHAEIVADVVRDIENLCGRRIPIAPESCLLELNNNLYISIVISRCFT 439
Query: 426 TTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAELD 485
T G +RW IRFD+GL PD+T+A+R+D E I DYY+ P +++L+L+E N LD
Sbjct: 440 TPSGTRRWKIRFDSGLRPDITVAIRMDVRNEAIRDYYILPALEFSADQLKLSEENAGFLD 499
Query: 486 IYRFSNLDRFFIMVERILL--GVH---YGYSNYS 514
+R LD + I L VH +G+S YS
Sbjct: 500 GFRTDTLDYLLKLSVNISLDKAVHHGAWGHSAYS 533
>gi|118745346|ref|ZP_01593322.1| Recombinase [Geobacter lovleyi SZ]
gi|118681721|gb|EAV88143.1| Recombinase [Geobacter lovleyi SZ]
Length = 534
Score = 384 bits (987), Expect = e-105, Method: Composition-based stats.
Identities = 221/514 (42%), Positives = 309/514 (60%), Gaps = 7/514 (1%)
Query: 10 YIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQS 69
YIRMSTE Q SP+ Q R I+ YA + G+ + + Y D G SG++ EKR QF SLI+ V+
Sbjct: 23 YIRMSTELQVESPENQERAIRTYAAQYGIEIIKAYADLGVSGINTEKREQFQSLIDDVEQ 82
Query: 70 GNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFK-GNDIGSQIFKAV 128
G ++ +L D SRWGRF++ E+ ++ + + C +P ++I +I +
Sbjct: 83 GRNGYNIVLYLDESRWGRFVDSREAEYHRMRLERKNVLCQSCEKPLTLTSNIADRIMTLL 142
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRKS 188
+ SA +YCR+L +KV+ GQ NL+ +G+RQGG AGFGLRR+LL G+PK EL G RKS
Sbjct: 143 RDESASDYCRQLSQKVWAGQCNLVSKGYRQGGVAGFGLRRMLLDEAGNPKQELAMGQRKS 202
Query: 189 LQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVHQ 248
L ++RVIL+ G + E +I+L IY FI +E IA LNAQ + T W++G V +
Sbjct: 203 LLTERVILMPGSDEECRIVLWIYDQFI-GGSSETDIAAQLNAQGVKTHFGRPWSRGTVCE 261
Query: 249 ILINEKYVGHNVWNKSCTSKTGKLRGK-NPESQWVRVENAFEAIIPQPLFNAAQAIIHQR 307
+L NEKYVG+N++N+ TS K R K NPES+WVR E+AFE ++ F Q I +R
Sbjct: 262 VLTNEKYVGNNLFNR--TSGKMKSRAKPNPESEWVRKEHAFEPVVDMERFYTVQGIYRER 319
Query: 308 SIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEPER 367
+ K TDEE+L LR L +G+LS LIIDEA+ P S +RFG L+R Y MI Y P+R
Sbjct: 320 NKKTTDEELLQGLRDLYARQGRLSALIIDEADFLPPCSLIRNRFGGLLRVYQMIGYTPKR 379
Query: 368 DYHYVEINRLMRQQYKKIVQQVLNEIIALGGR-VSIAPND-LLKINEEFTASLVVSPCRP 425
DY YV IN+ +R + +IV V+ I L GR + I P LL++N S+V+S C
Sbjct: 380 DYQYVAINQRLRTLHAEIVTDVVRTIENLCGRKIPIDPESCLLELNNNLFVSVVISRCFI 439
Query: 426 TTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAELD 485
T G +RW IRFD+ L PD+T+AVR+D E I DYY+ P +L+L+E N LD
Sbjct: 440 TPAGIRRWKIRFDSSLRPDITVAVRMDIRNEAIRDYYILPALEFSDGQLKLSEDNAGFLD 499
Query: 486 IYRFSNLDRFFIMVERILLGVHYGYSNYSDRRYS 519
+R LD + I L + ++ YS
Sbjct: 500 GFRTDTLDYLLKLSVNISLDKAVEHGSWGRSAYS 533
>gi|157080703|gb|ABV20411.1| site-specific recombinase, resolvase family [Escherichia coli
E24377A]
Length = 518
Score = 384 bits (985), Expect = e-104, Method: Composition-based stats.
Identities = 208/498 (41%), Positives = 309/498 (62%), Gaps = 8/498 (1%)
Query: 10 YIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQS 69
Y+RMST+HQ++S Q +I+ YA++ + + Y D G+SG+S R L++ V+
Sbjct: 16 YLRMSTDHQQYSLHNQSEYIKDYAEKNNMEIAYTYDDAGKSGVSIVGRHSLQQLLSDVEQ 75
Query: 70 GNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGND--IGSQIFKA 127
D +L YD+SR+GRF N DE+A+Y + + G+ + YC+EP D + S +
Sbjct: 76 KKIDIQAVLFYDVSRFGRFQNSDEAAYYSFLFERNGVDLIYCSEPIPTKDFPLESSVILN 135
Query: 128 VKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRK 187
+KR SA + R L EKVF GQ NLI+ G+ QGG AG+GLRRLL+ +G K L RK
Sbjct: 136 IKRSSAAYHSRNLSEKVFIGQVNLIKLGYHQGGMAGYGLRRLLVDENGIAKEILSFRKRK 195
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVH 247
S+Q+DRVILI GP+ E KI+ +IY FI + E IA+ LN Q I + T WT+ +H
Sbjct: 196 SIQTDRVILIPGPKNEIKIVNRIYDLFIDNNVPEFIIAERLNEQNIPAENGTLWTRAKIH 255
Query: 248 QILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIHQR 307
QIL NEKY+G+N++NK+ + +L KNP+ +WVR + A++ II + +N AQ II R
Sbjct: 256 QILTNEKYIGNNIYNKTSSKLKSRLV-KNPKHEWVRCDKAYKPIISKKKYNKAQEIIQLR 314
Query: 308 SIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEPER 367
SI LT+E++L+KL+ L+ GKLSG IIDE + PSSS Y +RFG L+R Y +I Y+PE
Sbjct: 315 SIHLTNEDLLEKLKQKLESNGKLSGFIIDEDDTGPSSSVYRTRFGGLLRAYTLIGYKPEH 374
Query: 368 DYHYVEINRLMRQQYKKIVQQVLNEIIALGGRV---SIAPNDLLKINEEFTASLVVSPCR 424
DY Y++IN +R + +I++ EI+ + AP +L IN+EF S++V+ C
Sbjct: 375 DYSYLKINEALRSFHSEIIEDFKGEILKSNCHIDEYKYAP--MLYINDEFLISVLVTKCI 432
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
G RW +RFD + D+TI +R++ + +D+Y+ P E NK+ + E+N L
Sbjct: 433 HMKSGKLRWKVRFDNSQKADITIVIRMNSQNISPLDFYIIPKIENEYNKMCMTETNNIRL 492
Query: 485 DIYRFSNLDRFFIMVERI 502
D+YRF NLD+ ++ R+
Sbjct: 493 DLYRFDNLDKLLQIITRM 510
>gi|146312530|ref|YP_001177604.1| Recombinase [Enterobacter sp. 638]
gi|145319406|gb|ABP61553.1| Recombinase [Enterobacter sp. 638]
Length = 518
Score = 374 bits (961), Expect = e-102, Method: Composition-based stats.
Identities = 208/498 (41%), Positives = 306/498 (61%), Gaps = 8/498 (1%)
Query: 10 YIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQS 69
Y+RMST+HQ++S Q +I+ YA++ + + Y D G+SG+S R L++ V+
Sbjct: 16 YLRMSTDHQQYSLHNQSEYIKNYAEKNNMEIAYTYDDAGKSGVSIVGRHSLQQLLSDVEQ 75
Query: 70 GNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGND--IGSQIFKA 127
+ +L YD+SR+GRF N DE+A+Y + + G+ + YC+EP + + S +
Sbjct: 76 KKINIQAVLFYDVSRFGRFQNSDEAAYYSFLFERNGVDLIYCSEPIPTKEFPLESSVILN 135
Query: 128 VKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRK 187
+KR SA + R L EKVF GQ NLI+RG+ QGG AG+GLRRLL+ + K L RK
Sbjct: 136 IKRSSAAYHSRNLSEKVFIGQVNLIKRGYHQGGMAGYGLRRLLVDENDIAKEILNFRKRK 195
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVH 247
S+Q+DRVILI GP+ E +I+ +IY FI H E IA+ LN Q I + + WT+G +H
Sbjct: 196 SIQTDRVILIPGPKIEIQIVNKIYDLFIDHHVPEFIIAEKLNEQNIAAENGSYWTRGKIH 255
Query: 248 QILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIHQR 307
QIL NEKY+G+N++NK+ +SK KNP+ +WVR + AF+ II + FN AQ II R
Sbjct: 256 QILTNEKYIGNNIYNKT-SSKLKSKSIKNPKHEWVRCDKAFKPIISKKKFNKAQDIIQLR 314
Query: 308 SIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEPER 367
SI L+++++L+KL+ L+ GKLSG IIDE + PSSS Y +RFG L+R Y++I Y+PE
Sbjct: 315 SIHLSNDDLLEKLKQKLENNGKLSGFIIDEDDTGPSSSVYRARFGGLLRAYSLIGYKPEH 374
Query: 368 DYHYVEINRLMRQQYKKIVQQVLNEIIALGGRV---SIAPNDLLKINEEFTASLVVSPCR 424
DY Y++IN +R Y +++ N I+ V AP +L INEE S+V++ C
Sbjct: 375 DYSYLQINEALRTFYSYVIEDFKNNILQNNCYVDAHKYAP--MLYINEELIISVVITKCN 432
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
G RW +RFD D+TI +R+D E+ D+Y+ P +K+ ++E N L
Sbjct: 433 HMKSGKLRWKVRFDNTSRADITIVIRMDSQNESPRDFYIIPKIDNAFSKMVMSEKNNLRL 492
Query: 485 DIYRFSNLDRFFIMVERI 502
++YRF NLD F ++ I
Sbjct: 493 ELYRFDNLDNFLNIINHI 510
>gi|13488417|ref|NP_109424.1| recombinase homolog [Mesorhizobium loti MAFF303099]
gi|14028171|dbj|BAB54763.1| recombinase homolog [Mesorhizobium loti MAFF303099]
Length = 506
Score = 373 bits (958), Expect = e-101, Method: Composition-based stats.
Identities = 209/504 (41%), Positives = 294/504 (58%), Gaps = 10/504 (1%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTEHQ +S D QR I+ YA+ G + Y D GRSGL+ RP L+
Sbjct: 3 AAQYLRMSTEHQTYSIDNQRDAIRDYAEIMGYEIVATYEDAGRSGLNLGGRPGLQRLLAD 62
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
V+SG ADF ++VYD+SRWGRF NIDESA YE C G+++ +CAE F + I S +
Sbjct: 63 VESGRADFETVVVYDVSRWGRFQNIDESAAYEYRCQMAGVRIEFCAEQFANDGSIESDVL 122
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
KA+KR A E R L +KVF GQ LI GFRQG GFGLRRLL+ G PK L +
Sbjct: 123 KAIKRSMAAEQSRMLSQKVFIGQARLIRMGFRQGSKVGFGLRRLLVDQHGRPKGILSPSE 182
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
KSLQ+DR+IL+ GP E + I+ F+ KTE ++A LN + +L+D WT+
Sbjct: 183 YKSLQTDRIILVLGPPDEIATVRWIFGHFVKTRKTELEMARLLNKRGVLSDLGRPWTRVS 242
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRG---KNPESQWVRVENAFEAIIPQPLFNAAQA 302
VH +L NE Y+G+++WNK + +LR +NP WVRVEN E I+ + LFN AQ
Sbjct: 243 VHSVLTNENYIGNSIWNK----HSARLRSHQVRNPPELWVRVENILEPIVDRKLFNRAQI 298
Query: 303 IIHQRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIH 362
++ LT++EML L+ LL +G LS IID A DCP S+ Y SRFG++++ Y +I
Sbjct: 299 VLKTIYRHLTNDEMLAALKALLARRGALSSFIIDAAPDCPPSTRYMSRFGTIVKAYELIG 358
Query: 363 YEPERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVS-IAPNDLLKINEEFTASLVVS 421
YEP ++ Y+ +NR + +I++ +L + GG + + DLL+IN+E T ++
Sbjct: 359 YEPPKNSRYIFVNRRLETMRLQIIEDLLAAVEKRGGIATHVMETDLLRINQEITVAIATG 418
Query: 422 PCRPTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNP 481
CR ++ G RW + D PD+ + +R++ D +I DY + P + K L N
Sbjct: 419 RCRVSSFGYPRWFAKADREPPPDIFVLIRMNPDDLSIRDYLIAPAH-EIAGKSELHAING 477
Query: 482 AELDIYRFSNLDRFFIMVERILLG 505
A LD Y F L+ + ER +G
Sbjct: 478 ARLDTYIFPTLNPLIRLAERASVG 501
>gi|148253008|ref|YP_001237593.1| putative recombinase [Bradyrhizobium sp. BTAi1]
gi|146405181|gb|ABQ33687.1| putative recombinase [Bradyrhizobium sp. BTAi1]
Length = 568
Score = 361 bits (927), Expect = 6e-98, Method: Composition-based stats.
Identities = 205/495 (41%), Positives = 281/495 (56%), Gaps = 4/495 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
AVAY+RMST+ Q +S Q I YA + + + R Y D+G+SGL ++RP SL+
Sbjct: 46 AVAYVRMSTDRQIYSTANQIDAIAAYAARKNIAILRTYKDDGKSGLLLDRRPALKSLLGD 105
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
V G ADF ILVYDISRWGRF N DESAHYE IC + G++V YCAE F + + S +
Sbjct: 106 VMLGKADFDCILVYDISRWGRFQNSDESAHYEFICKEAGVRVEYCAEEFSNDGSLLSNVM 165
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K++KR A EY REL KVF Q LIE+GFRQGG A +GLRRLLL +G K L+ G
Sbjct: 166 KSLKRAMAAEYSRELSTKVFAAQCRLIEKGFRQGGTASYGLRRLLLDQNGQSKGRLEPGQ 225
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
RK QSDRVIL GPE E ++ +++H F+ K+E IA LN + IL R WT
Sbjct: 226 RKYTQSDRVILQPGPESELAVVREMFHQFV-EGKSESLIARELNQEGILNRRGYPWTHQS 284
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
V +L NE Y G NV+N+ KLR +P SQW++ AF+ II +F+ AQ
Sbjct: 285 VRYVLNNENYTGVNVYNRKTCRLASKLRNNSP-SQWIKAPCAFDPIIDPEIFDRAQRHRK 343
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
QR I L++ EML +L +LL+ KG+LS +IDE++ P +S Y+ RFGSL Y +I+Y P
Sbjct: 344 QRRIWLSNREMLARLESLLREKGRLSATLIDESDHLPDNSTYALRFGSLGNAYKLINYRP 403
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGR-VSIAPNDLLKINEEFTASLVVSPCR 424
++ YV+ + + K+ ++ + GG V +LL IN T S+ ++ C
Sbjct: 404 RTNFRYVDRGVFLAAKIKEAATDLIRLVERGGGSAVFDEAAELLTINGAITVSIYIARCT 463
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
G W + L D +A+R D NI+DY L P G K + NPA L
Sbjct: 464 RIPGGGLMWRVNRRRYLAGDWIVALRPDLPCRNILDYLLLPAPGFPKQKAEFSNRNPARL 523
Query: 485 DIYRFSNLDRFFIMV 499
R+ ++ ++
Sbjct: 524 AACRYESIASLLPLI 538
>gi|13476719|ref|NP_108288.1| site-specific recombinase [Mesorhizobium loti MAFF303099]
gi|14027480|dbj|BAB53749.1| site-specific recombinase [Mesorhizobium loti MAFF303099]
Length = 519
Score = 355 bits (910), Expect = 5e-96, Method: Composition-based stats.
Identities = 195/497 (39%), Positives = 291/497 (58%), Gaps = 3/497 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMSTE Q +S D QR I+ YA+ G + Y D GRSGLS RP LI
Sbjct: 17 AAQYLRMSTERQIYSIDNQRDAIRNYAEVMGYDIVATYEDPGRSGLSILGRPGLKRLIED 76
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
++S ADF ++VYD+SRWGRF N DESA YE C + G+++ +CAE F + IGS +
Sbjct: 77 IESRRADFETVVVYDVSRWGRFQNTDESASYEYRCQRAGVRIEFCAELFVNDGSIGSDVL 136
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
KA+KR A EY R L +VF GQ +++ GF GGPAG+GLRRLL+ G+PK L
Sbjct: 137 KAIKRSMAAEYSRMLSNRVFAGQSRIVKLGFSGGGPAGYGLRRLLVDGSGNPKAILHRDQ 196
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
RK L SDRV+L+ GPE E + I++ F+ + KT +IA +LNA+ ++T+ WT
Sbjct: 197 RKGLASDRVVLVPGPENEVSTVRWIFNQFVKKGKTAVEIASALNARGLVTEFGRPWTGAC 256
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
V IL +EKYVG+ VWN+ + + + R +NP S +VR +N E ++ + LF+ AQAI
Sbjct: 257 VGTILASEKYVGNIVWNR-ISHRLLQNRLRNPPSAFVRADNVIEPLVTRALFDRAQAIRR 315
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
R+ DEE+L L LLK +G+LS IID A C S+S Y+ RFGS+ Y +I Y+
Sbjct: 316 ARTYLRPDEELLADLTKLLKERGRLSSPIIDAAPGCHSASIYAHRFGSMNAAYQLIGYDG 375
Query: 366 ERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAPN-DLLKINEEFTASLVVSPCR 424
+Y ++I R + Q ++ ++ ++++I +GG P ++++N+EF+ ++ + R
Sbjct: 376 SANYRKLDIRRRLIQIRQQTIENLMSDIEGVGGSALYDPQTKIMRVNDEFSVAIWTAQYR 435
Query: 425 PTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFPMKGRESNKLRLAESNPAEL 484
G RW + P++TI +R++ D + + D+ + P +S L N L
Sbjct: 436 MNVTGFPRWPFWKRGLIGPEVTILIRMESDNQTVRDFLIAPAHEAQSALHMLKADNGVRL 495
Query: 485 DIYRFSNLDRFFIMVER 501
D + F++LD M R
Sbjct: 496 DAFLFASLDPVVEMARR 512
>gi|27375141|ref|NP_766670.1| recombinase [Bradyrhizobium japonicum USDA 110]
gi|27348277|dbj|BAC45295.1| recombinase [Bradyrhizobium japonicum USDA 110]
Length = 526
Score = 292 bits (747), Expect = 5e-77, Method: Composition-based stats.
Identities = 176/464 (37%), Positives = 249/464 (53%), Gaps = 9/464 (1%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMST++Q++S + Q I YA+ L + Y DEG SGL E R L+
Sbjct: 21 AAQYVRMSTDYQQYSIENQAVVIATYAELHKLTIVHTYRDEGESGLRIENRGGLTELVED 80
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
VQSG ADF+H+LV+D+SRWGRF ++DESAHYE IC + G++V YCAE F + + + I
Sbjct: 81 VQSGRADFAHLLVFDVSRWGRFQDVDESAHYEFICRRAGVEVAYCAEQFDNDGSLLASIM 140
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K +KR A E+ REL KVF G L RGF+ GGP + +R L+ PK L G
Sbjct: 141 KNIKRVMAAEFSRELSAKVFAGSVRLTHRGFKMGGPTAYAFQRRLVDDQCRPKGILTIGQ 200
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
RKSL +D V LI G + +I+ I H+++ RHK++ IA LN + IL + W
Sbjct: 201 RKSLLTDHVKLIPGAPDQVEIVNWILHEYL-RHKSQATIARELNQRGILNSQGRPWLGKA 259
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
V +L NE Y+G +N+ + K G +NP W+R ENA E I+ + F AQ I+
Sbjct: 260 VGDLLRNEAYIGVLTYNRK-SRKLGAKVTRNPRELWIRKENAIEPIVHRDAFRRAQKIMG 318
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
+ + + +EEML +LR +L KGKLS II+ + PS S+Y FG+L Y +I Y
Sbjct: 319 EGRVSIPEEEMLLRLRKVLMKKGKLSKTIINSSPGLPSMSSYVLHFGALRNIYRLIGYNG 378
Query: 366 ERDY--HYVEINRLMRQQYKKIVQQVLNEIIALGGRVSI--APNDLLKINEEFTASLVVS 421
+++ Y R Q + L + GR + A + L+I+ V+
Sbjct: 379 NQEWFDKYASHQRWAALQLSNAAR--LRDAFERLGRSATLNASTECLRIDNVVNVVFRVA 436
Query: 422 PCRPTTRGNKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFP 465
CR RW +++ +AVRLDE E I DY L P
Sbjct: 437 RCRNYENRPLRWTLQYRVRWPKGWVVAVRLDEKNEAIFDYVLMP 480
>gi|146337625|ref|YP_001202673.1| putative recombinase [Bradyrhizobium sp. ORS278]
gi|146190431|emb|CAL74430.1| putative recombinase [Bradyrhizobium sp. ORS278]
Length = 543
Score = 286 bits (733), Expect = 2e-75, Method: Composition-based stats.
Identities = 181/467 (38%), Positives = 268/467 (57%), Gaps = 9/467 (1%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+R+STE Q++S + Q + YA +G+ + Y D GRSGLS R SLI
Sbjct: 16 AAQYLRVSTESQKYSIENQAAALAAYAARRGIEIIETYADRGRSGLSISGREALKSLIKD 75
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIF 125
V+ A F ILV+D++RWGRF ++DESA+YE IC + GI++HYCA+ F+ + + S +
Sbjct: 76 VELSRALFDCILVFDVTRWGRFQDVDESAYYEFICKRAGIQIHYCADEFENDGSLASVVL 135
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K +KR +A +Y R+L +KVF GQ + GF +GGPA FGLRRLL+ G K L+ G+
Sbjct: 136 KNIKRVAAADYSRQLSKKVFLGQSRVASEGFWRGGPAPFGLRRLLVDERGRVKTVLQIGE 195
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
RK+L+S+R IL GP+ E I+ +I+ F R KT +IA LNA+ + WT
Sbjct: 196 RKNLKSERTILGPGPKHEIAIVRRIFEHFATRTKTRTEIAADLNAKRFRNAQGKLWTMLT 255
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
+ +L NE Y+GH V+N+ + K G+ +NP W+R +NAF+ II LF AQ ++
Sbjct: 256 ISNVLRNEAYLGHIVYNRR-SMKLGERNVRNPPEMWIRHQNAFKPIIAPALFLKAQNVMA 314
Query: 306 --QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHY 363
+ TD+E+L+ L+ LL G+L+ I A+D P++S ++ RFGSL Y +I Y
Sbjct: 315 ELESGRTRTDKELLELLKGLLLRDGRLTMKSITLAKDMPNASVFTKRFGSLDEAYRLIGY 374
Query: 364 EPERDYHYVEINRLMRQQYKKIVQQVLNEIIALGGRVSIAPN-DLLKINEEFTASLVVS- 421
P Y + E+ + Q + + +V ++ G RVS P LL IN T ++ VS
Sbjct: 375 RPAARYRFKEVRANIDQIIRSVADKVSTDLERRGRRVSFLPELYLLTINGAVTLTIAVSR 434
Query: 422 PCRPTTRG---NKRWMIRFDTGLEPDLTIAVRLDEDAENIIDYYLFP 465
+ T G +RW +R DLT+ VR++ I DY+L P
Sbjct: 435 AVKDGTNGARPARRWELRKTRFARSDLTLVVRMNAINTMIQDYFLLP 481
>gi|69935264|ref|ZP_00630244.1| Recombinase [Paracoccus denitrificans PD1222]
gi|119383216|ref|YP_914272.1| Recombinase [Paracoccus denitrificans PD1222]
gi|119372983|gb|ABL68576.1| Recombinase [Paracoccus denitrificans PD1222]
Length = 328
Score = 284 bits (726), Expect = 1e-74, Method: Composition-based stats.
Identities = 152/303 (50%), Positives = 208/303 (68%), Gaps = 2/303 (0%)
Query: 138 RELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRKSLQSDRVILI 197
REL KVF GQ L+E GFRQGG G+GLRR+L+ G+PK EL G++KSLQ+DRVIL+
Sbjct: 6 RELSVKVFAGQCRLVELGFRQGGAPGYGLRRVLIDEHGNPKGELSRGEQKSLQTDRVILV 65
Query: 198 AGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVHQILINEKYVG 257
GPE EQ ++ ++Y F+ ++ER+IAD+LNA + TD + WT+ VHQ+L NEKY+G
Sbjct: 66 PGPEDEQDVVRRMYRMFVEDGRSEREIADALNADGLRTDLDRPWTRATVHQVLTNEKYIG 125
Query: 258 HNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIHQRSIKLTDEEML 317
+NV+NK + K + R NP W+R E A+ AI+ + LF A+ I+ RS L+D+++L
Sbjct: 126 NNVFNK-ISFKLKQRRVVNPREMWIRAEGAYPAIVDEALFLRAREIVDARSRHLSDQDLL 184
Query: 318 DKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEPERDYHYVEINRL 377
D LR LL KG LSGL+IDE ED PSSSA+ SRFGSL+R Y M+ Y+P+RDY Y++INR
Sbjct: 185 DALRALLASKGFLSGLVIDEHEDTPSSSAFRSRFGSLLRAYEMVGYQPDRDYRYIKINRK 244
Query: 378 MRQQYKKIVQQVLNEIIALGGRVSIAP-NDLLKINEEFTASLVVSPCRPTTRGNKRWMIR 436
+R+ + +IV V+ I GG P ++L +N EFT S+V+S C T G+ RW IR
Sbjct: 245 LREAHPQIVAGVIAGIENAGGSAVQDPRTEILTVNGEFTVSVVLSRCFETAAGSLRWRIR 304
Query: 437 FDT 439
DT
Sbjct: 305 LDT 307
>gi|74316365|ref|YP_314105.1| hypothetical protein Tbd_0347 [Thiobacillus denitrificans ATCC
25259]
gi|74055860|gb|AAZ96300.1| hypothetical protein Tbd_0347 [Thiobacillus denitrificans ATCC
25259]
Length = 339
Score = 233 bits (594), Expect = 2e-59, Method: Composition-based stats.
Identities = 126/252 (50%), Positives = 164/252 (65%), Gaps = 2/252 (0%)
Query: 31 KYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQSGNADFSHILVYDISRWGRFLN 90
+YA+ +G+ + R Y DEG+SGL + R LI V+ G ADF ILVYD+SRWGRF +
Sbjct: 82 RYAERRGISIVRTYADEGKSGLRIDGRRALQQLIKDVEGGTADFQIILVYDVSRWGRFQD 141
Query: 91 IDESAHYEQICSKMGIKVHYCAEPFKGNDIG-SQIFKAVKRWSAGEYCRELGEKVFNGQK 149
DESA+YE IC + GI+V YCAE F+ + S I K VKR A EY REL KVF GQ
Sbjct: 142 ADESAYYECICRRAGIQVAYCAEQFENDGSPVSTIVKGVKRAMAREYSRELSAKVFAGQC 201
Query: 150 NLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQ 209
LIE G+RQG PAGFGLRR+L+ GS K L G++KSLQ+DRV+L+ GP E +I+ Q
Sbjct: 202 RLIELGYRQGSPAGFGLRRVLIDQQGSSKGMLARGEQKSLQTDRVVLMPGPGDEIRIVHQ 261
Query: 210 IYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVHQILINEKYVGHNVWNKSCTSKT 269
IY FI + +IA LN+ + TD + WT+ VH++L NEKY+G+NV+N+ + K
Sbjct: 262 IYRWFIDEGLGDSEIAMRLNSIRVRTDFDRYWTRATVHEVLTNEKYIGNNVYNR-ISFKL 320
Query: 270 GKLRGKNPESQW 281
KLR N W
Sbjct: 321 KKLRVVNTPDMW 332
>gi|148553113|ref|YP_001260695.1| Recombinase [Sphingomonas wittichii RW1]
gi|148498303|gb|ABQ66557.1| Recombinase [Sphingomonas wittichii RW1]
Length = 559
Score = 219 bits (558), Expect = 3e-55, Method: Composition-based stats.
Identities = 135/365 (36%), Positives = 194/365 (53%), Gaps = 3/365 (0%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
A Y+RMS EHQ +S Q R I YA++ G +T+ Y D G SGL+ +RP +L+
Sbjct: 12 AAQYLRMSKEHQRYSIRNQARAISTYAEQHGFKITKTYTDPGESGLTLRERPGLQALLAD 71
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQ-IF 125
V + F ILV D+SRWGRF N+D+S HYE IC + G+ V YCAEPF + +
Sbjct: 72 VIKPSRPFERILVLDVSRWGRFQNLDQSGHYEFICFEAGVPVIYCAEPFDNDGTPVMALL 131
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
K +KR A EY REL KV Q + G + GGP FG R+L+ D P +L+ G
Sbjct: 132 KQIKRLQAAEYSRELSSKVLYAQLLQAKIGHKLGGPRRFGFERVLVDEDDQPIQKLERGQ 191
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
K+L + RV+ GP E K+I I+ + + ++IA+ L T + W+
Sbjct: 192 AKALNNQRVVYAIGPSDEVKVIRDIFTWYTRDRMSIQKIAERLTDSDAPTGDHPTWSYSR 251
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
V +IL +E +G V+N++ K R KNP V+ + E II + F +A +
Sbjct: 252 VRRILADELVLGIYVFNRTTQRLKSKPR-KNPPEALVKTK-VTEPIISRVQFESAARRLR 309
Query: 306 QRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRTYAMIHYEP 365
R + EE L + LL+ KG L+G +ID+ P SS +FGSL R Y ++ Y+P
Sbjct: 310 IRRHNVPPEENLAAVSRLLRTKGYLTGKLIDQCLYTPCSSVLLRQFGSLHRVYELVGYKP 369
Query: 366 ERDYH 370
E +H
Sbjct: 370 EGWWH 374
>gi|27383119|ref|NP_774648.1| similar to recombinase [Bradyrhizobium japonicum USDA 110]
gi|27356293|dbj|BAC53273.1| bll8008 [Bradyrhizobium japonicum USDA 110]
Length = 248
Score = 146 bits (369), Expect = 3e-33, Method: Composition-based stats.
Identities = 79/160 (49%), Positives = 100/160 (62%), Gaps = 1/160 (0%)
Query: 10 YIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQS 69
Y+RMS E Q +S Q I YA+ L + R Y DEGRSGL + RP + LI+ VQS
Sbjct: 25 YVRMSRELQRYSIKNQLAAIAAYAEANTLTIVRTYADEGRSGLRIKGRPGLIELIDDVQS 84
Query: 70 GNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN-DIGSQIFKAV 128
G ADF HILVYD+SRWGRF ++DESA+YE +C + G++V YCAE FK + S I K++
Sbjct: 85 GQADFDHILVYDVSRWGRFQDVDESAYYEFLCKRSGVQVEYCAELFKNDGTFVSGIAKSL 144
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRR 168
KR A E+ REL KV G + G+R G P GF R
Sbjct: 145 KRGMAAEWSRELSVKVHAGHCRVASLGYRVGAPVGFRTTR 184
>gi|147668865|ref|YP_001213683.1| Resolvase, N-terminal domain [Dehalococcoides sp. BAV1]
gi|146269813|gb|ABQ16805.1| Resolvase, N-terminal domain [Dehalococcoides sp. BAV1]
Length = 517
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 94/315 (29%), Positives = 148/315 (46%), Gaps = 34/315 (10%)
Query: 1 MEYKNLAVA-YIRMSTEHQE--FSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKR 57
ME + VA Y R+S++ Q+ S Q + I++YAK G + RE++DE +G + R
Sbjct: 1 MENRAKKVAIYARVSSDKQDVDLSISAQLKAIREYAKNNGYEVVREFVDEAETGRTT-AR 59
Query: 58 PQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKG 117
P F +I+ + F ILV+ SR+ R + ++S Y+ + K + V EPF
Sbjct: 60 PAFREMISLARHPQKPFDVILVWKYSRFAR--SREDSIVYKAMLRKSEVHVISINEPFDD 117
Query: 118 NDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSP 177
G ++ +A+ Y LGE+V G + RGF +G R
Sbjct: 118 TPTG-RLLEAIIESLDEFYSDNLGEEVTRGMRESAARGFYLSSKPPYGYR---------- 166
Query: 178 KFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDR 237
K K G+++ + + AG I+ ++ D + + K +IA LN + I + R
Sbjct: 167 KVRFKDGEKEHTKLEIEPNQAG------IVSSMFTDAL-KGKGLTEIAKELNHKGIASPR 219
Query: 238 NTRWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLF 297
W K V I+ NE Y G VW ++ RG P +RVENA AII + +F
Sbjct: 220 GKGWGKTAVRTIMSNEAYAGSFVWGRNSK------RGLAP----IRVENACPAIISRQVF 269
Query: 298 NAAQAIIHQRSIKLT 312
+ AQ +I +R+ KLT
Sbjct: 270 DNAQKLIRERAPKLT 284
>gi|147668949|ref|YP_001213767.1| Resolvase, N-terminal domain [Dehalococcoides sp. BAV1]
gi|146269897|gb|ABQ16889.1| Resolvase, N-terminal domain [Dehalococcoides sp. BAV1]
Length = 548
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 91/302 (30%), Positives = 136/302 (45%), Gaps = 30/302 (9%)
Query: 10 YIRMSTEHQ--EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFV 67
Y R+S+E Q E S Q R ++ YA + + E++DE SG +A RP+F +I
Sbjct: 6 YARVSSEAQDVELSIAAQLRALRDYAAKNEQQIVYEFIDEAESGRTAS-RPEFKKMIALA 64
Query: 68 QSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKA 127
+S + F ILV+ SR+ R N +S Y+ + K GIKV EP G ++ +
Sbjct: 65 KSNTSPFEAILVWKYSRFAR--NRVDSITYKTLLQKKGIKVISINEPLDDTPTG-KLMEG 121
Query: 128 VKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRK 187
+ Y LG+ + G K RGF G G R ++ DG K +R
Sbjct: 122 IIESLDEFYSANLGQDIKRGMKENALRGFFNGSQPPLGYR-IIKVKDGP-----KQRNRL 175
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTE--RQIADSLNAQVILTDRNTRWTKGV 245
+SD I + H F K + ++IA +LN + T RW +
Sbjct: 176 EPESD----------TSSGIKTVRHIFGLAGKGQGCKEIAVTLNREGYRTRAGERWGRTT 225
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
VH+IL NE Y+G VW ++ G+ KN E V++ NAF II + +F Q +
Sbjct: 226 VHKILTNEAYIGTLVWG----ARAGRPASKNGEG--VKLGNAFPGIIDKEVFQRVQQNMT 279
Query: 306 QR 307
R
Sbjct: 280 AR 281
>gi|153815808|ref|ZP_01968476.1| hypothetical protein RUMTOR_02053 [Ruminococcus torques ATCC 27756]
gi|145846833|gb|EDK23751.1| hypothetical protein RUMTOR_02053 [Ruminococcus torques ATCC 27756]
Length = 493
Score = 94.0 bits (232), Expect = 2e-17, Method: Composition-based stats.
Identities = 85/295 (28%), Positives = 134/295 (45%), Gaps = 32/295 (10%)
Query: 9 AYIRMSTEHQE-FSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFV 67
Y+R+ST QE SPD Q + ++ +AK+ +I+ + + + G SG A+KRP+F +I
Sbjct: 8 GYVRVSTSGQEELSPDSQAKLLKDFAKKNDMIILQIFYELGISGRKADKRPEFQKMIALA 67
Query: 68 QSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKM-GIKVHYCAEPFKGNDIGSQIFK 126
+S I+V+ SR+ R N +ES Y+ + K + V +EP GS I +
Sbjct: 68 KSDKHPVDCIIVWKFSRFAR--NQEESIVYKSLLKKKHNVDVLSVSEPLVDGPFGSLIER 125
Query: 127 AVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDR 186
++ W Y L +V G +RG Q P G + + G P
Sbjct: 126 IIE-WMDEYYSVRLSGEVTRGMTEKAKRGGYQARPP-LGYK---IQERGKPP-------- 172
Query: 187 KSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVV 246
+ PE E +II I+ ++ H IA LN T N + + +
Sbjct: 173 ----------VIVPE-EAEIIKIIFDKYVNEHTGIFDIARYLNLCGFKTSHNKPFERRSI 221
Query: 247 HQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQ 301
IL N Y G WN++ S+T ++R PES+W+ + AII + LF+ AQ
Sbjct: 222 EYILQNPTYCGMIRWNRT-VSETNEIR---PESEWIVSDGQQPAIISKELFDKAQ 272
>gi|57235099|ref|YP_182249.1| resolvase domain protein [Dehalococcoides ethenogenes 195]
gi|57225547|gb|AAW40604.1| resolvase domain protein [Dehalococcoides ethenogenes 195]
Length = 554
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 89/305 (29%), Positives = 137/305 (44%), Gaps = 26/305 (8%)
Query: 10 YIRMSTEHQ--EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFV 67
Y R+S+E Q E S Q R ++ YA + +T E++DE SG +A RP+F +I
Sbjct: 20 YARVSSEAQDVELSIAAQLRALRDYAGKNNYQITYEFIDEAESGRTA-ARPEFKRMIAMS 78
Query: 68 QSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKA 127
+S F ILV+ ++R+ R N +S Y+ + K GIKV EP + G ++ +
Sbjct: 79 KSSIPPFEAILVWKLNRFAR--NRADSITYKLLLQKKGIKVISINEPLDDSPTG-KLMEG 135
Query: 128 VKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRK 187
+ Y LG+ + G K RGF G G L+ PK
Sbjct: 136 IIESLDEFYSANLGQDIKRGMKENALRGFYNGSQPPLGYE--LVKVKDGPK--------- 184
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVH 247
Q +++ A K + I+ + K ++IA+ LN + +T W + VH
Sbjct: 185 --QRNKLAPEADTSPGVKTVRYIFA-LADKGKGCKEIANILNREEYITKAGKPWGRTTVH 241
Query: 248 QILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIHQR 307
+IL NE Y G VW ++ + KN E+ VR+ENA+ II + F Q + R
Sbjct: 242 KILCNEAYTGTLVWG----ARPSQGLAKNEEA--VRLENAWPGIIDKETFQRIQQSMVSR 295
Query: 308 SIKLT 312
K T
Sbjct: 296 QPKNT 300
>gi|57235097|ref|YP_180815.1| resolvase domain protein [Dehalococcoides ethenogenes 195]
gi|57225545|gb|AAW40602.1| resolvase domain protein [Dehalococcoides ethenogenes 195]
Length = 542
Score = 92.8 bits (229), Expect = 5e-17, Method: Composition-based stats.
Identities = 89/305 (29%), Positives = 137/305 (44%), Gaps = 26/305 (8%)
Query: 10 YIRMSTEHQ--EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFV 67
Y R+S+E Q E S Q R ++ YA + +T E++DE SG +A RP+F +I
Sbjct: 6 YARVSSEAQDVELSIAAQLRALRDYAGKNNYQITYEFIDEAESGRTA-ARPEFKRMIAMS 64
Query: 68 QSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKA 127
+S F ILV+ ++R+ R N +S Y+ + K GIKV EP + G ++ +
Sbjct: 65 KSSIPPFEAILVWKLNRFAR--NRADSITYKLLLQKKGIKVISINEPLDDSPTG-KLMEG 121
Query: 128 VKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRK 187
+ Y LG+ + G K RGF G G L+ PK
Sbjct: 122 IIESLDEFYSANLGQDIKRGMKENALRGFYNGSQPPLGYE--LVKVKDGPK--------- 170
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVH 247
Q +++ A K + I+ + K ++IA+ LN + +T W + VH
Sbjct: 171 --QRNKLAPEADTSPGVKTVRYIFA-LADKGKGCKEIANILNREEYITKAGKPWGRTTVH 227
Query: 248 QILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIHQR 307
+IL NE Y G VW ++ + KN E+ VR+ENA+ II + F Q + R
Sbjct: 228 KILCNEAYTGTLVWG----ARPSQGLAKNEEA--VRLENAWPGIIDKETFQRIQQSMVSR 281
Query: 308 SIKLT 312
K T
Sbjct: 282 QPKNT 286
>gi|51891474|ref|YP_074165.1| site-specific recombinase [Symbiobacterium thermophilum IAM 14863]
gi|51855163|dbj|BAD39321.1| site-specific recombinase [Symbiobacterium thermophilum IAM 14863]
Length = 532
Score = 92.0 bits (227), Expect = 8e-17, Method: Composition-based stats.
Identities = 85/320 (26%), Positives = 144/320 (45%), Gaps = 52/320 (16%)
Query: 7 AVAYIRMST----EHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLS 62
A AYIR+ST E E P Q R + +AKE G ++ REY+D G S +A+ RPQF+
Sbjct: 36 AAAYIRVSTGMQAEEGESLPAQQAR-LHAWAKENGYVIVREYVDAGESARTAD-RPQFVR 93
Query: 63 LINFVQSGNADFSHILVYDISRWGRFL-NIDESAHYEQICSK-MGIKVHYCAEPFKGNDI 120
++ ++ F +LV+ +W RF N+++++ Y+ + + +G+++ +P +
Sbjct: 94 MLQDAKAQPRPFDSVLVW---KWDRFARNMEDASMYKALFRRRLGVELVSITQPTPEGAV 150
Query: 121 GSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGG-PAGFGLR--RLLLSADGSP 177
G Q+ + + A E V++ L E+G G P G+ LR RL++ D
Sbjct: 151 G-QLLERMLDLIAEFQSALTAENVYSTMAYLAEQGRWLGKRPFGYDLRDGRLVIKPD--- 206
Query: 178 KFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSL---NAQVIL 234
E + + + R ++ IA+ N
Sbjct: 207 -------------------------EAEAVAWAFRMVARRERSVYAIAEGFGTGNPFPAT 241
Query: 235 TDRNTRWTKGVVHQILINEKYVGHNVWNKSCTS------KTGKLRGKNPESQWVRVENAF 288
R +W+ V ++L NE Y+G WN+ T K+ K+RG S W+ VENA
Sbjct: 242 LARGYKWSPTAVRKMLQNEVYIGRATWNRRYTDIDHVDGKSTKIRGYRDPSDWITVENAH 301
Query: 289 EAIIPQPLFNAAQAIIHQRS 308
AI+ + F A Q ++ + S
Sbjct: 302 PAIVDEETFEAVQRVLEEYS 321
>gi|153853425|ref|ZP_01994834.1| hypothetical protein DORLON_00823 [Dorea longicatena DSM 13814]
gi|149754211|gb|EDM64142.1| hypothetical protein DORLON_00823 [Dorea longicatena DSM 13814]
Length = 493
Score = 89.7 bits (221), Expect = 5e-16, Method: Composition-based stats.
Identities = 84/297 (28%), Positives = 131/297 (44%), Gaps = 32/297 (10%)
Query: 7 AVAYIRMSTEHQE-FSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
A YIR+ST QE SPD Q ++ YA + +++ + + D G SG A KRP F +I
Sbjct: 6 AYGYIRVSTHDQEEISPDSQEHLLRDYAAKNNIVILKIFTDLGISGRKANKRPGFQEMIG 65
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKM-GIKVHYCAEPFKGNDIGSQI 124
+ + ILV+ SR+ R N +ES Y+ + K + V +EP + GS I
Sbjct: 66 LAKGDDHPVDQILVWKFSRFAR--NQEESIVYKSLLKKQHNVDVVSVSEPLSDDPFGSLI 123
Query: 125 FKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTG 184
+ ++ W Y L +V+ G K RG Q P G
Sbjct: 124 ERIIE-WMDEYYSIRLSGEVYRGMKENALRGAYQARPP--------------------LG 162
Query: 185 DRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKG 244
+ S ++I PE E KI+ I+ + + IA LN+ + T + +
Sbjct: 163 YKVVEHSKPPVII--PE-EAKIVRTIFEKYTNEGMSFFDIARYLNSLGLKTSHGKPFERR 219
Query: 245 VVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQ 301
V I+ N Y G WN++ S T +++ K+ +W+ E AII + LF +AQ
Sbjct: 220 SVEYIIQNPSYCGMIRWNRTENS-TNRIKDKD---EWIVTEGQQPAIISKELFESAQ 272
>gi|57234989|ref|YP_180904.1| resolvase domain protein [Dehalococcoides ethenogenes 195]
gi|57225437|gb|AAW40494.1| resolvase domain protein [Dehalococcoides ethenogenes 195]
Length = 510
Score = 86.3 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 84/306 (27%), Positives = 140/306 (45%), Gaps = 33/306 (10%)
Query: 8 VAYIRMSTEHQE--FSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
V Y R+S+E Q+ S Q + ++ +A+ + + REY+DE +G + RP F +I
Sbjct: 4 VLYARVSSEKQDVDLSLSAQLKAMRLFAQGREYQVLREYIDEAETGRTT-ARPAFREMIV 62
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
+ F ILV+ SR+ R + ++S Y+ + K G++V EP + +G ++
Sbjct: 63 AARRPGKPFEAILVWKYSRFAR--SREDSIVYKTMLRKNGVQVISINEPTENTPVG-RLM 119
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
+ + Y LGE+V G + RGF A +G ++ + ADG
Sbjct: 120 EGMIEGLDEFYSDNLGEEVTRGMRESASRGFYLSYRAPYGYSKVKV-ADGGKI------- 171
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
R L+ D V I I+ I K ++A LN++ I + + WTKG
Sbjct: 172 RTKLELDPV--------RAPITHSIFKSVI-SGKGVVEVARELNSKGIASAKGKSWTKGT 222
Query: 246 VHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIH 305
++ +L NE Y G VW ++ RG P ++V A AI+ F+A Q ++
Sbjct: 223 IYSMLNNELYTGTVVWGRNSK------RGLEP----IKVTGACPAIVDIETFDAVQQMMA 272
Query: 306 QRSIKL 311
R+ KL
Sbjct: 273 SRAPKL 278
>gi|150021364|ref|YP_001306718.1| Resolvase, N-terminal domain [Thermosipho melanesiensis BI429]
gi|149793885|gb|ABR31333.1| Resolvase, N-terminal domain [Thermosipho melanesiensis BI429]
Length = 485
Score = 81.6 bits (200), Expect = 1e-13, Method: Composition-based stats.
Identities = 70/258 (27%), Positives = 125/258 (48%), Gaps = 23/258 (8%)
Query: 7 AVAYIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
A AY R S++ Q + S + Q I+KY +E+G ++ +EY+D +S + +KR F +
Sbjct: 4 AAAYARYSSDRQSDTSIEAQLEKIRKYCEEKGYVVVKEYIDRAQSA-ATDKRIAFQQM-- 60
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
F + N +F ++VY + R+ R N+ +S Y + ++ I + EP DI + F
Sbjct: 61 FKDAENHEFDVVVVYKLDRFAR--NLYDSVVYTKKLEELNIALESTTEPIT-QDIAGKFF 117
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
+ + Y L +++ + + ++G+ GG FG + L+ D K
Sbjct: 118 RNIMGAINELYIENLKQEIRDKAIVVAKKGYFMGGVPPFGFK-LVEETDEYGK------K 170
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
RK + D E E + +I+ + T RQIAD LN + + T R +WT
Sbjct: 171 RKRYEID--------ENEAPYVREIFQ-LASQGVTLRQIADKLNQKGLKTRRGNKWTVRA 221
Query: 246 VHQILINEKYVGHNVWNK 263
++++++NEKY G + K
Sbjct: 222 LYEMILNEKYAGIYTYQK 239
>gi|113936514|ref|ZP_01422407.1| hypothetical protein CaulDRAFT_0587 [Caulobacter sp. K31]
gi|113729275|gb|EAU10352.1| hypothetical protein CaulDRAFT_0587 [Caulobacter sp. K31]
Length = 157
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 56/88 (63%)
Query: 6 LAVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
+A Y+RMSTEHQ +S + Q + YA + + + Y D GRSG++ +KRP SL++
Sbjct: 13 VAAQYVRMSTEHQRYSLENQMAALGVYALNHDIKIVKTYRDHGRSGVTLKKRPGLQSLLS 72
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDE 93
V + A FS +LV D+SRWGRF + DE
Sbjct: 73 DVMATRAPFSAVLVLDVSRWGRFQDTDE 100
>gi|114844278|ref|ZP_01454731.1| Recombinase [Thermoanaerobacter ethanolicus X514]
gi|114805741|gb|EAU57529.1| Recombinase [Thermoanaerobacter ethanolicus X514]
Length = 501
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 87/308 (28%), Positives = 143/308 (46%), Gaps = 45/308 (14%)
Query: 7 AVAYIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
A AY R S+++Q E S + Q R I++Y ++ + L + Y DE +S + + RP FL +I
Sbjct: 8 AAAYARYSSDNQREESIEAQLRAIKEYCEKNNIQLVKIYTDEAKSA-TTDDRPAFLQMIK 66
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
S F+ ++V+ + R+ R N +SA Y + K G+K+ E + S I
Sbjct: 67 --DSSLGLFNAVIVHKLDRFAR--NRYDSAFYRRQLKKNGVKLISVLEQLD-DSPESIIL 121
Query: 126 KAVKRWSAGEYCRELGEKVFNGQK-NLIERGFRQG-GPAGFGLRRLLLSADGSPKFELKT 183
++V A Y + L +V G K N + F G P G+ +
Sbjct: 122 ESVLEGMAEYYSKNLAREVMKGLKENAFQAKFNGGIPPLGYDI----------------- 164
Query: 184 GDRKSLQSDRVILIAGPEFEQ-KIILQIY-HDFIYRHKTERQIADSLNAQVILTDRNTRW 241
D +I E E ++I ++Y + YRH I D LN + T + +
Sbjct: 165 -------VDEKYVINEKEAEAVRLIFELYAQGYGYRH-----IIDELNLRGYRTKKGNPF 212
Query: 242 TKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQ 301
+K +H+IL NEKY+G ++NK T K ++ ++ + ++NA AII + LF Q
Sbjct: 213 SKNSIHEILKNEKYIGKYIFNKG-TKKNHRMVKEDV----IVIDNAIPAIIDKDLFEQVQ 267
Query: 302 AIIHQRSI 309
I +R I
Sbjct: 268 KKIEERKI 275
>gi|153815909|ref|ZP_01968577.1| hypothetical protein RUMTOR_02154 [Ruminococcus torques ATCC 27756]
gi|145846728|gb|EDK23646.1| hypothetical protein RUMTOR_02154 [Ruminococcus torques ATCC 27756]
Length = 527
Score = 79.0 bits (193), Expect = 7e-13, Method: Composition-based stats.
Identities = 92/330 (27%), Positives = 146/330 (44%), Gaps = 43/330 (13%)
Query: 9 AYIRMSTE--HQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
AY R+ST+ Q S + Q+ F +Y K+ G L R Y DEG SG + R +FL ++
Sbjct: 5 AYCRVSTDTADQLNSLEAQKEFFSEYTKQTGDTLVRLYADEGISGTKIKNRKEFLRMMAD 64
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFK--GN-DIGSQ 123
+ G F ++V DISR+ R N + + +GI+ + GN +
Sbjct: 65 AEKGM--FDMLVVKDISRFAR--NTVDLLQNIRKLKALGIETQFLTANMTSMGNSEFVLT 120
Query: 124 IFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKT 183
IF A+ A E ++V G+K E+G G+ +
Sbjct: 121 IFGAL----AQEESANTSKRVKFGKKMNAEKGRVPNIVYGY---------------DKTI 161
Query: 184 GDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTK 243
GD +L+ + + E +++ QIY + +IA+ LN + T RN +W++
Sbjct: 162 GDYFNLEIN--------QGEAEVVKQIYKWYTEEGYGALKIANMLNEKGFKTKRNCKWSQ 213
Query: 244 GVVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQ 301
+ +IL NE Y G + K S TG+ + K+ E++W VE II F AQ
Sbjct: 214 NAICRILTNEIYTGKIINGKQEVSDFLTGQRKDKD-ETEWFVVERPEIRIIEDETFELAQ 272
Query: 302 AIIHQR--SIKLTDEEMLDK--LRTLLKVK 327
I+H R + +T E +K TL+K K
Sbjct: 273 EILHSRHDTFNITHERQSNKHLFSTLIKCK 302
>gi|28211764|ref|NP_782708.1| DNA integration/recombination protein [Clostridium tetani E88]
gi|28204206|gb|AAO36645.1| DNA integration/recombination protein [Clostridium tetani E88]
Length = 499
Score = 78.6 bits (192), Expect = 9e-13, Method: Composition-based stats.
Identities = 87/308 (28%), Positives = 139/308 (45%), Gaps = 38/308 (12%)
Query: 7 AVAYIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
AVAY R S+++Q E S + Q I+KYA + + + REY+DE SG + E R F +I
Sbjct: 8 AVAYARFSSDNQREESIEAQIMDIKKYALKNNITVLREYVDEAISGRTFE-RKSFKRMIE 66
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
+ D ILV+ + R+ R N ++A Y+ I K IK+ Y +P + G+ +
Sbjct: 67 DAKKNMFDL--ILVHKVDRFAR--NRYDAAIYKSILKKHNIKIKYVMQPIDDSPEGN-LM 121
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGG--PAGFGLRRLLLSADGSPKFELKT 183
+ + A Y L +V G K ++ GG P G+
Sbjct: 122 EGILESFAEYYSENLANEVMKGLKINAKKAQFNGGYPPLGY------------------- 162
Query: 184 GDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTK 243
+ D+ +I E E +I+ +I+ D ++IAD LN + R +
Sbjct: 163 ----DIAEDKTYIIN--EREARIVREIF-DLYLDGIGYKKIADILNNKGYKNKRGKPFVF 215
Query: 244 GVVHQILINEKYVGHNVWNKSCTS-KTGK--LRGKNPESQWVRVENAFEAIIPQPLFNAA 300
+ IL N+KY G +NK+ K G+ L+ N + +RVE+ II + FN A
Sbjct: 216 NSIPTILKNDKYCGIYTYNKTSRKYKNGRRNLKKYNKDEDIIRVEDGIPKIISKEKFNTA 275
Query: 301 QAIIHQRS 308
Q I +R+
Sbjct: 276 QQEIKKRT 283
>gi|110634568|ref|YP_674776.1| Recombinase [Mesorhizobium sp. BNC1]
gi|110285552|gb|ABG63611.1| Recombinase [Mesorhizobium sp. BNC1]
Length = 541
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 89/312 (28%), Positives = 131/312 (41%), Gaps = 46/312 (14%)
Query: 10 YIRMSTE-HQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R STE Q+ S + Q + +A GL + Y D RSG S R + L+ +
Sbjct: 7 YARFSTELQQDRSIEDQIELCRSHADRNGLSVVAVYDDRARSGASVYGRDGLIHLLEAAR 66
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
+ F ILV R R + ++ A + S +GI++ E I V
Sbjct: 67 --DRKFDVILVEAFDRLSR--DQEDLAGIWKRLSFLGIELQAVHE-----GTADHIQIGV 117
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSP-KFELKTGDRK 187
+ Y +L KV G + ++ G GG A +G R G P + E+ G
Sbjct: 118 RGLLGSLYLTDLAHKVRRGMQGVVRDGRHAGGRA-YGYR----PVPGKPGELEIVEG--- 169
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVV- 246
E +I+ +I+ +++ KT R IA LNA+ I R TRW+ +
Sbjct: 170 ---------------EAEIVRRIFSEYV-GGKTPRGIAFDLNAEGISPPRGTRWSASTIN 213
Query: 247 ------HQILINEKYVGHNVWNKSCTSK---TG-KLRGKNPESQWVRVENAFEAIIPQPL 296
H I++NE Y G VWN+ K TG ++ NP +W R E AI+ + L
Sbjct: 214 GNKTRHHGIILNELYAGKVVWNRIRMLKDPDTGRRISRPNPPEEWKRAEAPHLAIVSEEL 273
Query: 297 FNAAQAIIHQRS 308
F AAQ RS
Sbjct: 274 FAAAQTRKEARS 285
>gi|153810586|ref|ZP_01963254.1| hypothetical protein RUMOBE_00967 [Ruminococcus obeum ATCC 29174]
gi|149833765|gb|EDM88846.1| hypothetical protein RUMOBE_00967 [Ruminococcus obeum ATCC 29174]
Length = 472
Score = 75.5 bits (184), Expect = 9e-12, Method: Composition-based stats.
Identities = 90/346 (26%), Positives = 142/346 (41%), Gaps = 57/346 (16%)
Query: 6 LAVAYIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYL-DEGRSGLSAEKRPQFLSL 63
+ YIR+ST+ Q E SPD Q+R + YAK+ G+I++ +++ E SG +KRP+F +
Sbjct: 5 IGALYIRVSTDDQAELSPDAQKRLLLDYAKKNGIIISNDFIFSESVSGRHVQKRPEFQRM 64
Query: 64 INFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQ 123
I + + ILV+ SR+ R N +ES Y+ + K ++V +EP GS
Sbjct: 65 IGIAKQPSHPIDVILVWKYSRFAR--NQEESIVYKSMLKKDHVEVISVSEPLIDGPFGSL 122
Query: 124 IFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKT 183
I + ++ W Y L +V G K E+ R G SP +
Sbjct: 123 IERIIE-WMDEYYSIRLSGEVLRGMK---EKALRNG-------------YQSSPCLGYEA 165
Query: 184 -GDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWT 242
G K Q + E E ++ I + ++ E IA N T R +
Sbjct: 166 VGHGKPFQIN--------EAEYAMVSYIMDLYDNQNMDETAIARKCNDLGYKTKRGNPFE 217
Query: 243 KGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQA 302
+ + +IL N Y G WN V E A E I + F+ Q
Sbjct: 218 RRTIDRILQNPFYCGIVSWNG------------------VEFEGAHEVRISKERFDRRQR 259
Query: 303 IIHQRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYS 348
+I R + K R + K LSGL+ + C ++ +Y+
Sbjct: 260 LIASRKRPM-------KARNISTCKHWLSGLL--KCSVCGATLSYT 296
>gi|150020297|ref|YP_001305651.1| Resolvase, N-terminal domain [Thermosipho melanesiensis BI429]
gi|149792818|gb|ABR30266.1| Resolvase, N-terminal domain [Thermosipho melanesiensis BI429]
Length = 494
Score = 74.7 bits (182), Expect = 2e-11, Method: Composition-based stats.
Identities = 81/307 (26%), Positives = 143/307 (46%), Gaps = 37/307 (12%)
Query: 7 AVAYIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
A AY R S+ +Q E S + Q I++YAK +++ Y+D+ +S SA+ RP+F +I+
Sbjct: 11 AAAYARYSSNNQSELSIEAQLSEIKEYAKNNNIVIVETYVDKAKSAKSAD-RPEFQRMIS 69
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGS--- 122
+ F ILV+ + R+ R N +S Y + +K+ E F + G
Sbjct: 70 --DAKKHKFDVILVHKLDRFSR--NRYDSLTYSHLLENSNVKLISITEQFSDDPAGELVK 125
Query: 123 QIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGG--PAGFGLRRLLLSADGSPKFE 180
I ++V W Y L +V K +G+ GG P G+ L+ ++
Sbjct: 126 SIIESVNEW----YINNLRNEVKTKTKYAAMKGYFLGGMPPLGYDLKEVIDEYG------ 175
Query: 181 LKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTR 240
KT R ++ I++ K I ++Y + + + ++IA+SLN + T +
Sbjct: 176 -KTRKRYAVNHAEAIIV-------KEIFRLYAEGL----SFKKIAESLNQKGYKTKNGGK 223
Query: 241 WTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAA 300
+ + +IL N+KY G ++N+ SK G R ++ ++VE A II + LF+
Sbjct: 224 FKASSISEILRNKKYGGIYIYNQ---SKHGT-RIRSEHDDVIKVEGAVPTIIDRDLFDKV 279
Query: 301 QAIIHQR 307
Q + +R
Sbjct: 280 QEKLSKR 286
>gi|27383118|ref|NP_774647.1| similar to recombinase [Bradyrhizobium japonicum USDA 110]
gi|27356292|dbj|BAC53272.1| blr8007 [Bradyrhizobium japonicum USDA 110]
Length = 215
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 43/128 (33%), Positives = 74/128 (57%), Gaps = 2/128 (1%)
Query: 234 LTDRNTR-WTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAII 292
+ + N R WT G++ IL NE Y+G ++N++ + + G+ KNP+ WVR + I+
Sbjct: 4 IANHNGRPWTDGMIPTILANENYIGKTIYNRT-SRRLGQKLVKNPDHTWVRGAAQIQPIV 62
Query: 293 PQPLFNAAQAIIHQRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFG 352
+F AQ ++ +R +++ + EML +LR L+ +GKL+ II+ S+Y FG
Sbjct: 63 DPSIFARAQKLLAERRVEIPENEMLLRLRLTLRRRGKLNSRIINTTLGLNHVSSYVKHFG 122
Query: 353 SLIRTYAM 360
SL + YA+
Sbjct: 123 SLRKAYAL 130
>gi|148252037|ref|YP_001236622.1| putative Resolvase [Bradyrhizobium sp. BTAi1]
gi|146404210|gb|ABQ32716.1| putative Resolvase [Bradyrhizobium sp. BTAi1]
Length = 540
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 83/310 (26%), Positives = 139/310 (44%), Gaps = 26/310 (8%)
Query: 7 AVAYIRMST----EHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLS 62
A Y+R+ST EH PD Q+R + Y + +G L +++ G S + ++RP+F
Sbjct: 7 AALYLRVSTARQAEHDVSIPD-QKRQGEAYCEARGYQLVETFVEPGASA-TNDRRPEFQR 64
Query: 63 LINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGS 122
+I S A F ++V+ SR+ F + + Y + +K G+K+ + G+D
Sbjct: 65 MIEAGTSKPAPFDVVIVHSFSRF--FRDAFDMEFYVRKLAKNGVKLLSITQEI-GDDPVH 121
Query: 123 QIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELK 182
Q+ + + +E + V K +GF G G R +++A+ K
Sbjct: 122 QMMRQIMALFDEYQSKENAKHVMRALKENARQGFWNGSLPPIGYR--VVAAEQRGAKTKK 179
Query: 183 TGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWT 242
+ L +D V LI L + D + I LN++ I T RW
Sbjct: 180 KLEIDPLHADTVRLIYR--------LALEGDGTTGQMGVKNIVSYLNSRRIFTRDGGRWG 231
Query: 243 KGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQA 302
G VH+IL Y+G + +NK SKT +L+ P S+ V V + II + F+ QA
Sbjct: 232 IGQVHRILTRRTYMGEHEFNKR--SKTKELK---PVSEIVTV--PVQPIIDRETFDTVQA 284
Query: 303 IIHQRSIKLT 312
++ R+ K+T
Sbjct: 285 LLKARNPKVT 294
>gi|52082601|ref|YP_081392.1| site-specific DNA recombinase [Bacillus licheniformis ATCC 14580]
gi|52787999|ref|YP_093828.1| SpoIVCA [Bacillus licheniformis ATCC 14580]
gi|52005812|gb|AAU25754.1| site-specific DNA recombinase [Bacillus licheniformis ATCC 14580]
gi|52350501|gb|AAU43135.1| SpoIVCA [Bacillus licheniformis DSM 13]
Length = 414
Score = 73.2 bits (178), Expect = 4e-11, Method: Composition-based stats.
Identities = 92/312 (29%), Positives = 138/312 (44%), Gaps = 36/312 (11%)
Query: 2 EYKNLAVAYIRMSTEHQE---FSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRP 58
E K +A+ Y R+STE Q +S Q + +++Y + G + EY+DEG SG + RP
Sbjct: 3 EIKRVAI-YCRVSTEEQATEGYSISAQLQTLRQYTQLYGWEIAEEYVDEGISGKNISGRP 61
Query: 59 QFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN 118
LI+ V+ F +LV+ ISR R N+ ++ G+K +E F
Sbjct: 62 AMQKLISDVEKDK--FQAVLVWKISRLSR--NMLDTLTLLDKFEDYGVKFISYSENF--- 114
Query: 119 DIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPK 178
D GS I + V + A + E N ++ G +Q R L S +G
Sbjct: 115 DTGSPIGRLVVQLMA-----SIAEMERNTLSENVKLGMKQ--------RALEGSWNGGVV 161
Query: 179 FELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRN 238
F T +++ + + + E +I+ QIY + K + IA+ LN T RN
Sbjct: 162 FGYDTIEKELVINKK---------EAEIVQQIYQLYA-NGKGLKSIANYLNKAGYRTKRN 211
Query: 239 TRWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFN 298
++ V QIL N Y G W K T + RGKNP + VE EAII L++
Sbjct: 212 CYFSINGVAQILDNVIYNGKISWLKVENWDTKRRRGKNPNP--ILVEGQHEAIISDELWS 269
Query: 299 AAQAIIHQRSIK 310
QA +S K
Sbjct: 270 MVQARRKSKSFK 281
>gi|156869034|gb|EDO62406.1| hypothetical protein CLOLEP_00825 [Clostridium leptum DSM 753]
Length = 509
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 74/268 (27%), Positives = 122/268 (45%), Gaps = 35/268 (13%)
Query: 44 YLDEGRSGLSAEKRPQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSK 103
Y DE +G SAEKR F LI ++G D +LV ISR+ R N + +
Sbjct: 59 YADEAVTGTSAEKRSDFQRLIQDCRAGKID--RVLVKSISRFAR--NTLDCIQTVRELKM 114
Query: 104 MGIKVHYCAEPFKGNDIGSQIFKAVKRWSAGEYCRELGEKV-FNGQKNLIERGFRQ-GGP 161
+G+ + + E + +GS++ ++ +A E + + + ++ QK L F P
Sbjct: 115 LGVAIEFEKEHIDTSKMGSELILSMLSAAAQEESLSISKNLKWSYQKRLNSGDFITCSAP 174
Query: 162 AGFGLRRLLLSADGSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTE 221
G+ L+ D + LI PE E I+ I++ ++ K+
Sbjct: 175 LGYVLK-----------------DNQ--------LIPDPE-EVPIVQYIFNSYL-SGKST 207
Query: 222 RQIADSLNAQVILTDRNTRWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQW 281
+IA +LN T RN RW G++ IL NEKY+G ++ KS T T L + Q
Sbjct: 208 TEIARTLNETENRTKRNARWHHGMIRYILTNEKYIGDALFQKSYTPDTIPLARVKNDGQL 267
Query: 282 VR--VENAFEAIIPQPLFNAAQAIIHQR 307
+ ++N+ AII + F Q +I+Q+
Sbjct: 268 AQYYIKNSHPAIIDREKFEQVQLLINQK 295
>gi|114844655|ref|ZP_01455097.1| Recombinase [Thermoanaerobacter ethanolicus X514]
gi|114805342|gb|EAU57141.1| Recombinase [Thermoanaerobacter ethanolicus X514]
Length = 519
Score = 71.2 bits (173), Expect = 1e-10, Method: Composition-based stats.
Identities = 83/330 (25%), Positives = 138/330 (41%), Gaps = 42/330 (12%)
Query: 9 AYIRMSTEHQE--FSPDIQRRFIQKYAKEQ------GLILTREYLDEGRSGLSAEKRPQF 60
AY R+ST+ E S + Q+ + Y K GL Y DEG SG E R +
Sbjct: 24 AYCRVSTDSDEQLVSLEAQKSHYETYIKANPEWEYVGL-----YYDEGISGTKKENRTEL 78
Query: 61 LSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDI 120
L +++ ++ D I+ ISR+ R N + + +GI +++ E +
Sbjct: 79 LRMLSDCENKKIDL--IITKSISRFAR--NTTDCLEMVRKLLDLGIYIYFEKENINTQSM 134
Query: 121 GSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFE 180
S++ ++ A + E K ++R F+ G F + P F
Sbjct: 135 ESELMLSILSGLAESESISISEN----NKWAVQRRFQNGT---FKI--------SYPPFG 179
Query: 181 LKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTR 240
D + ++ PE + +I+ I+ + + K +++AD LN I T R R
Sbjct: 180 YDNIDGQ--------MVVNPE-QAEIVKYIFAE-VLSGKGTQKVADDLNQMGIPTKRGAR 229
Query: 241 WTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAA 300
WT + IL NEKY G + K+ T R E +EN EAII +F A
Sbjct: 230 WTATTIRGILKNEKYTGDAILQKTYTDSRFNKRTNYGEKNKYLIENHHEAIISHEVFEAV 289
Query: 301 QAIIHQRSIKLTDEEMLDKLRTLLKVKGKL 330
+A ++QR+ + E+ +K + GK+
Sbjct: 290 EAALNQRAKEKGIEKRNNKYQNRYSFSGKI 319
>gi|118726981|ref|ZP_01575594.1| Recombinase [Clostridium cellulolyticum H10]
gi|118663621|gb|EAV70269.1| Recombinase [Clostridium cellulolyticum H10]
Length = 534
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 82/307 (26%), Positives = 133/307 (43%), Gaps = 37/307 (12%)
Query: 9 AYIRMSTEH--QEFSPDIQRRFIQKYAKEQ-GLILTREYLDEGRSGLSAEKRPQFLSLIN 65
AY R+STE Q S Q+++ ++Y + + Y DEG SG AE R +F +I+
Sbjct: 7 AYCRVSTEKDDQVNSLQSQKKYFEEYIRNRPDWEFVDIYADEGISGTQAENRIEFQRMIS 66
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
+ D IL +ISR+ R N S Y ++ ++G+ V + ++ D ++
Sbjct: 67 DAKYKRLDL--ILTKEISRFAR--NTKISIDYTRMLKELGVGVIFISDNINTLDGDGELR 122
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPA-GFGLRRLLLSADGSPKFELKTG 184
+ A + R+ E+V GQK +E+G G G+ L + L+ +
Sbjct: 123 LTIMSAIAQDESRKTSERVKWGQKRRMEQGVVFGRELFGYNLYKGTLTVN---------- 172
Query: 185 DRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDR-NTRWTK 243
E E +I+ I+ + K IA L I + RW+
Sbjct: 173 ----------------EEEAEIVRLIFRKYTIEGKGTHVIARELYEDNIQSKSYKNRWSN 216
Query: 244 GVVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQ 301
V+ ++L NEKYVG K+ T K + E + V ++N IIP+ L++A Q
Sbjct: 217 TVILRLLKNEKYVGDLAQKKTITPNYLNHKKKYNRGEEEIVYIKNHHTPIIPRELWDATQ 276
Query: 302 AIIHQRS 308
I QRS
Sbjct: 277 EQIIQRS 283
>gi|153955240|ref|YP_001396005.1| hypothetical protein CKL_2622 [Clostridium kluyveri DSM 555]
gi|146348098|gb|EDK34634.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
Length = 529
Score = 69.3 bits (168), Expect = 6e-10, Method: Composition-based stats.
Identities = 77/313 (24%), Positives = 126/313 (40%), Gaps = 42/313 (13%)
Query: 4 KNLAVAYIRMSTEHQE--FSPDIQRRFIQKYAKEQ------GLILTREYLDEGRSGLSAE 55
KN VAY R+ST+ E S Q+ + Y K GL Y DEG SG E
Sbjct: 28 KNRVVAYCRVSTDSNEQLVSLQAQKAHYETYIKANPEWEYAGL-----YYDEGISGTKKE 82
Query: 56 KRPQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPF 115
R L +++ ++G D I+ ISR+ R N + + +G+ +++ E
Sbjct: 83 NRSDLLRMLSDCETGRIDL--IITKSISRFAR--NTTDCLEMVRKLIGLGVHIYFEKENI 138
Query: 116 KGNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADG 175
+ S++ ++ A + E K I+R F+ +G
Sbjct: 139 NTGSMESELMLSILSGLAESESISISENT----KWAIQRRFQ----------------NG 178
Query: 176 SPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILT 235
+ K +++ ++ + E + I ++ K +++A+ LN + I +
Sbjct: 179 TFKISYPPYGYQNIDGQMIVNLKQAEVVKYIFAEVLSG-----KGTQKVANDLNQKGIPS 233
Query: 236 DRNTRWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQP 295
R RWT + IL NEKY G + K+ T E VEN EAII
Sbjct: 234 KRGGRWTATTIRGILTNEKYTGDVILQKTYTDSHFNRHTNYGEKNMYLVENHHEAIISHE 293
Query: 296 LFNAAQAIIHQRS 308
F A AI++QR+
Sbjct: 294 DFEAVDAILNQRA 306
>gi|153956423|ref|YP_001397188.1| hypothetical protein CKL_3840 [Clostridium kluyveri DSM 555]
gi|146349281|gb|EDK35817.1| Conserved hypothetical protein [Clostridium kluyveri DSM 555]
Length = 549
Score = 69.3 bits (168), Expect = 7e-10, Method: Composition-based stats.
Identities = 80/309 (25%), Positives = 130/309 (42%), Gaps = 39/309 (12%)
Query: 9 AYIRMSTEHQEFSPDIQRR---FIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
AY R+STE +E + + K +K + L + DEG +G SA+KR +FL L+
Sbjct: 36 AYCRVSTEQEEQQSSYAAQIAYYTDKISKNKDWELAGIFADEGITGTSAKKRTEFLKLMV 95
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
+ G D +L +SR+ R N ++ Y + GI + + E ++ S++
Sbjct: 96 LCEKGKVDM--VLTKSVSRFSR--NTLDAIGYIRKLKAKGIPIIFEKEGINTMEMASEMA 151
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLL---LSADGSPKFELK 182
A + V G++ + G F RLL DG PK
Sbjct: 152 LCFLSGFAQAESESISRNVTWGKRQSF-----KSGKVPFQYSRLLGYEKGEDGQPKIV-- 204
Query: 183 TGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTR-W 241
P+ E +I+ +I+ + Y + R I +SL A IL+ + W
Sbjct: 205 -----------------PD-EAEIVKRIFRSY-YSGASVRTIKESLEADNILSPTGKQEW 245
Query: 242 TKGVVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQPLFNA 299
+ GV+ +L NE+Y+G + K+ + T + R N E V E II + LFN
Sbjct: 246 SVGVLQYMLRNERYIGDALLQKTYVADCLTKETRKNNGEIPQYYVTGNHEPIISKDLFNL 305
Query: 300 AQAIIHQRS 308
Q I +R+
Sbjct: 306 VQEEIARRA 314
>gi|150391697|ref|YP_001321746.1| Resolvase, N-terminal domain [Alkaliphilus metalliredigens QYMF]
gi|149951559|gb|ABR50087.1| Resolvase, N-terminal domain [Alkaliphilus metalliredigens QYMF]
Length = 520
Score = 68.9 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 85/309 (27%), Positives = 135/309 (43%), Gaps = 39/309 (12%)
Query: 9 AYIRMSTEHQE--FSPDIQRRFIQKYAKEQG-LILTREYLDEGRSGLSAEKRPQFLSLIN 65
AY R+STE +E S ++Q +Y K+ + D+G SG + +KR +F +I
Sbjct: 31 AYCRVSTETEEQNLSYEVQVAHYTEYIKKNTEWEFAGIFADDGISGTNTKKREEFNRMIE 90
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
GN D ++ ISR+ R N + Y + + I V++ E D ++
Sbjct: 91 ECMEGNIDL--VITKSISRFAR--NTLDCLKYIRQLKEKNIAVYFEKENINTMDAKGEVL 146
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
+ A + + L + V G + ++G Q F G
Sbjct: 147 LTIMASLAQQESQSLSQNVKLGLQYRYQQGKVQVNHNRF------------------MGY 188
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNT-RWTKG 244
K + + +I+ PE E +II +IY +++ K+ I L ILT RW
Sbjct: 189 TKDEEGNLIIV---PE-EAEIIKRIYREYL-EGKSLVGIGRDLEKDGILTAAGKPRWRPE 243
Query: 245 VVHQILINEKYVGHNVWNKS-----CTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNA 299
+ +IL+NEKY+G + K+ T K K G P+ VEN+ EAIIP+ LF
Sbjct: 244 TIKKILLNEKYIGDALLQKTFTVDFLTKKRVKNEGHVPQ---YYVENSHEAIIPKELFLQ 300
Query: 300 AQAIIHQRS 308
AQ +H+RS
Sbjct: 301 AQEELHRRS 309
>gi|156867339|gb|EDO60711.1| hypothetical protein CLOLEP_02308 [Clostridium leptum DSM 753]
Length = 535
Score = 68.9 bits (167), Expect = 8e-10, Method: Composition-based stats.
Identities = 82/306 (26%), Positives = 135/306 (44%), Gaps = 35/306 (11%)
Query: 9 AYIRMSTEHQEFSPDIQRR---FIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
AY R+STE +E + + + K +G L + D+G SG+S +KR QF +I
Sbjct: 29 AYCRVSTEEEEQQNSFEVQVAYYTDKITHHEGWQLAGIFADDGISGVSTKKRDQFNKMIE 88
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQ-I 124
+ D IL ISR+ R N + + +I GI V + E +++ S+ I
Sbjct: 89 LCRKKKIDL--ILTKSISRFAR--NTLDCIKHVRILKSWGIPVIFEKENIDTSNMNSEMI 144
Query: 125 FKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTG 184
+ ++ E E + I G+RQG F R ++ G
Sbjct: 145 LTCLSSFAQAE-----SESISGNVTKGIRMGYRQG---RFSFR-----------YKNFLG 185
Query: 185 DRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDR-NTRWTK 243
RK + I+ PE E KII I +++ + R I ++L + + T N W+
Sbjct: 186 YRKGPDGEPKIV---PE-EAKIIRLIAQNYL-NGDSLRTIKETLESMGVPTATGNQNWST 240
Query: 244 GVVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQ 301
+ +IL NEKY+G + K+ T+ GK++ N E +++ AIIP+ +F Q
Sbjct: 241 EAIQRILQNEKYMGDVLLQKTYTADFIEGKVKKNNGELPQYYIKDNHPAIIPREMFYQIQ 300
Query: 302 AIIHQR 307
I +R
Sbjct: 301 EEIARR 306
>gi|150390378|ref|YP_001320427.1| Resolvase, N-terminal domain [Alkaliphilus metalliredigens QYMF]
gi|149950240|gb|ABR48768.1| Resolvase, N-terminal domain [Alkaliphilus metalliredigens QYMF]
Length = 566
Score = 68.6 bits (166), Expect = 1e-09, Method: Composition-based stats.
Identities = 97/365 (26%), Positives = 157/365 (43%), Gaps = 48/365 (13%)
Query: 7 AVAYIRMSTEHQ--EFSPDIQRRFIQKYAKE-QGLILTREYLDEGRSGLSAEKRPQFLSL 63
A YIR+ST HQ + S Q++ + Y+K G+ + D G SG + + RP+F +
Sbjct: 4 AALYIRVSTHHQIDKDSLPFQKKELINYSKYVLGVDEYEIFEDAGYSGKNTD-RPKFQEM 62
Query: 64 INFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGND-IGS 122
++ +++G +F+H+LV+ I R R L D + Y++I K + E F + +G
Sbjct: 63 MSRIRAG--EFTHVLVWKIDRVSRNLR-DFTEMYDEI-KKYNVTFISKNEQFDTSTAMGE 118
Query: 123 QIFKAVKRWSAGEYCREL-GEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFEL 181
+ K + ++ E R+L E+V++ + E+G G P G D KF +
Sbjct: 119 AMLKIILVFAELE--RKLTAERVYSIMLSRAEKGLWNGAPVPLGY-----DFDEELKFAV 171
Query: 182 KTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRW 241
E E KI+ I+ D K+ ++ L A I T RN W
Sbjct: 172 VN-----------------EEEAKIVKFIF-DTYEEVKSTGEVKHRLEANGIRTKRNGHW 213
Query: 242 TKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQ 301
T + ++ N YVG +N S GK+R PE +WV VE+ AI+ + +
Sbjct: 214 TTKTISDVIRNPFYVGTYRYNYR-YSPHGKIR---PEEEWVVVEDNHPAIVSKEQYEKLN 269
Query: 302 AII----HQRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSSSAYSSRFGSLIRT 357
I+ H R T E + + L+ I + D P S Y S+ R
Sbjct: 270 KIMDSNAHGRGTDRTKENHIHVFKGLISCSKCNKNYI--ASTDRPRSDGYRP---SVYRC 324
Query: 358 YAMIH 362
Y +H
Sbjct: 325 YNYVH 329
>gi|116630113|ref|YP_815285.1| Site-specific recombinase, DNA invertase Pin related protein
[Lactobacillus gasseri ATCC 33323]
gi|116095695|gb|ABJ60847.1| Site-specific recombinase, DNA invertase Pin related protein
[Lactobacillus gasseri ATCC 33323]
Length = 506
Score = 68.2 bits (165), Expect = 1e-09, Method: Composition-based stats.
Identities = 80/275 (29%), Positives = 123/275 (44%), Gaps = 36/275 (13%)
Query: 44 YLDEGRSGLSAEKRPQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSK 103
Y D+G SG + +KR QF +I + G D I+ ISR+ R N + Y +
Sbjct: 52 YADDGISGTNTKKREQFNKMIAACKVGKIDL--IVTKSISRFAR--NTIDCLKYIRDLKA 107
Query: 104 MGIKVHYCAEPFKGNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAG 163
+ + + + E D ++ + A + L + V G I+ ++QG
Sbjct: 108 INVAIFFEKENINTMDAKGEVLITIMASLAQQESESLSQNVKMG----IQYRYQQG---- 159
Query: 164 FGLRRLLLSADGSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQ 223
++ ++ + G K Q + VI PE E K+I +I++ ++ T +Q
Sbjct: 160 ----KVFVNHNHF------LGYTKDAQGNLVI---EPE-EAKVIKRIFYSYL-NGMTMKQ 204
Query: 224 IADSLNAQVILTDRNTR-WTKGVVHQILINEKYVGHNVWNKSCT-----SKTGKLRGKNP 277
IADSL A ILT T+ W V +IL NEKY+G + K+ T K K G P
Sbjct: 205 IADSLKADGILTGGKTKNWRSSSVAKILKNEKYMGDALLQKTYTVDFLNKKRVKNEGIMP 264
Query: 278 ESQWVRVENAFEAIIPQPLFNAAQAIIHQRSIKLT 312
+ VEN AIIP+ +F Q II QR +T
Sbjct: 265 Q---YYVENDHPAIIPKSVFMQVQQIIKQRRNGIT 296
>gi|125972526|ref|YP_001036436.1| Recombinase [Clostridium thermocellum ATCC 27405]
gi|125712751|gb|ABN51243.1| Recombinase [Clostridium thermocellum ATCC 27405]
Length = 539
Score = 67.4 bits (163), Expect = 2e-09, Method: Composition-based stats.
Identities = 81/310 (26%), Positives = 138/310 (44%), Gaps = 34/310 (10%)
Query: 10 YIRMSTEHQE----FSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
Y R+S + ++ S + QR + +YAKE GL + Y+D+G SG + + RP F + +
Sbjct: 12 YCRLSRDDEQSGDSMSIENQRSMLTRYAKENGLEIIDWYIDDGWSGTNFD-RPDFQRMKS 70
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPF---KGNDIGS 122
++ G D +LV D+SR GR I+ S + + ++ +E KG D
Sbjct: 71 DIEDGKIDI--VLVKDLSRLGRN-QIETSLCIQVFFPQHDVRFIAVSENIDTAKGEDDFM 127
Query: 123 QIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELK 182
++ W + R+ KV NG + G G A +G ++ D K +L
Sbjct: 128 ELRNLFNEW----FVRDTSRKVKNGYRQRALNGDYTGAFAPYGYKK-----DEQDKHKLV 178
Query: 183 TGDRKSLQSDRVILIAGPEFEQ-KIILQIYHDFI-----YRHKTERQIADSLNAQVILTD 236
+ + R+ +A + KI + + D I Y + ++ A+ N Q
Sbjct: 179 PDENVAHVVKRIFQMAVEGYSPYKISMALRADKILTPRAYVAQEYQRYANVFNPQYPYD- 237
Query: 237 RNTRWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRG--KNPESQWVRVENAFEAIIPQ 294
W + I+ N+ Y+GH V +K T K+ K + PE++W+ V+N E +I +
Sbjct: 238 ----WGATTIKIIIQNKVYLGHMVSHKY-TKKSFKTKEVVAVPENEWIEVKNTHEPLIDE 292
Query: 295 PLFNAAQAII 304
F AQ II
Sbjct: 293 ETFELAQKII 302
>gi|156867778|gb|EDO61150.1| hypothetical protein CLOLEP_01545 [Clostridium leptum DSM 753]
Length = 490
Score = 67.4 bits (163), Expect = 3e-09, Method: Composition-based stats.
Identities = 87/324 (26%), Positives = 135/324 (41%), Gaps = 53/324 (16%)
Query: 7 AVAYIRMSTEHQEF-----SPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFL 61
A Y+R+S E E S QR F+ +Y + G + Y+D+G +G + RP F
Sbjct: 5 AALYLRLSQEDGERWGESQSISNQRIFLTQYCQANGFTVAECYIDDGYTGTNF-NRPGFQ 63
Query: 62 SLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIK-------VHYCAEP 114
L+ ++ G ++ D+SR GR I+ + E + GI+ V E
Sbjct: 64 RLLRDIERGK--IKTVITKDLSRLGRDY-IETGRYVECYFPEKGIRYIAVNDGVDTGKEE 120
Query: 115 FKGNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSAD 174
GND+ + FKAV Y R++ KV + G G A +G ++
Sbjct: 121 SAGNDMSA--FKAVFN---DFYARDVSRKVRSALTAKRRAGEFIGAWAPYGYQK------ 169
Query: 175 GSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVIL 234
PK K L+ PE ++ +IY DF+ + ++ R IA+ L I
Sbjct: 170 -DPKQPGK-------------LVPDPE-SAGVVRRIYRDFL-KGESVRGIAEGLTEDKIP 213
Query: 235 T---------DRNTRWTKGVVHQILINEKYVGHNVWNKSCT-SKTGKLRGKNPESQWVRV 284
T RW + + +IL E Y G+ N+S T S K R P+ +W+ V
Sbjct: 214 TPMEKRSGGLKAQRRWNESTIRRILTCETYAGNLTQNQSKTISYKVKKRIPVPKKEWIVV 273
Query: 285 ENAFEAIIPQPLFNAAQAIIHQRS 308
N E +I + F AQ + RS
Sbjct: 274 SNTHEPLITKEEFQMAQQLFKTRS 297
>gi|156866822|gb|EDO60194.1| hypothetical protein CLOLEP_03017 [Clostridium leptum DSM 753]
Length = 509
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 71/258 (27%), Positives = 120/258 (46%), Gaps = 27/258 (10%)
Query: 8 VAYIRMS-TEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
V Y R S ++ +E S + Q + YA+ +G + REY+D SG S + RPQF +I
Sbjct: 4 VIYARYSDSKQREESIEAQLKVCHAYAESKGYTVIREYIDRALSGRS-DDRPQFQLMIK- 61
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFK 126
S F +LVY + R+ R + + A Y+ K G+KV E N G I +
Sbjct: 62 -HSERKQFQKVLVYKLDRFSR--DEYDPAIYKAQLRKNGVKVESATENIPDNSFGILI-E 117
Query: 127 AVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGG--PAGFGLRRLLLSADGSPKFELKTG 184
A+ + Y EL EKV + E+ GG P G+ L RL +P E K+
Sbjct: 118 ALISGNNASYSVELREKVKRNLELNAEKCLSNGGTTPLGYKLVRL------NPN-EEKSK 170
Query: 185 DRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKG 244
+ + + + Q++ + + + + ++I DSLNA+ + + + + K
Sbjct: 171 KKYVINEETAPTV------QEVFTKYANGW-----SIKEICDSLNARGLKSAQRAAFNKS 219
Query: 245 VVHQILINEKYVGHNVWN 262
+H +L N KY+G +++
Sbjct: 220 SLHTMLCNRKYLGIYIYD 237
>gi|118727442|ref|ZP_01576043.1| Recombinase [Clostridium cellulolyticum H10]
gi|118663201|gb|EAV69861.1| Recombinase [Clostridium cellulolyticum H10]
Length = 521
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 76/316 (24%), Positives = 126/316 (39%), Gaps = 42/316 (13%)
Query: 1 MEYKNLAVAYIRMSTEHQE--FSPDIQRRFIQKYAKEQ------GLILTREYLDEGRSGL 52
++ K VAY R+ST+ E S Q + Y K GL Y DEG SG
Sbjct: 16 IKQKTRVVAYCRVSTDSNEQLVSLQAQNAHYETYIKANPEWEYAGL-----YYDEGISGT 70
Query: 53 SAEKRPQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCA 112
E R L +++ ++G D I+ ISR+ R N + + +G+ +++
Sbjct: 71 KKENRSDLLRMLSDCETGRIDL--IITKSISRFAR--NTTDCLEMVRKLIDLGVHIYFEK 126
Query: 113 EPFKGNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLS 172
E + S++ ++ A + E K I+R F+
Sbjct: 127 ENINTGSMESELMLSILSGLAESESISISENT----KWAIQRRFQ--------------- 167
Query: 173 ADGSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQV 232
+G+ K +++ ++ + E + I ++ K +++A+ LN +
Sbjct: 168 -NGTFKISYPPYGYQNIDGQMIVNLKQAEVVKYIFAEVLSG-----KGTQKVANDLNQKG 221
Query: 233 ILTDRNTRWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAII 292
I + R RWT + IL NEKY G + K+ T E VEN EAII
Sbjct: 222 IPSKRGGRWTATTIRGILTNEKYTGDVILQKTYTDSHFNRHTNYGEENMYLVENHHEAII 281
Query: 293 PQPLFNAAQAIIHQRS 308
F A AI++QR+
Sbjct: 282 SHEDFEAVDAILNQRA 297
>gi|69937738|ref|ZP_00632345.1| Resolvase, N-terminal:Recombinase [Paracoccus denitrificans PD1222]
gi|119382863|ref|YP_913919.1| Recombinase [Paracoccus denitrificans PD1222]
gi|119372630|gb|ABL68223.1| Recombinase [Paracoccus denitrificans PD1222]
Length = 597
Score = 66.6 bits (161), Expect = 4e-09, Method: Composition-based stats.
Identities = 83/305 (27%), Positives = 138/305 (45%), Gaps = 37/305 (12%)
Query: 10 YIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R S++ Q E S Q R + A+++G + EY D SG S +RP +LI +
Sbjct: 6 YARYSSDQQREASIADQFRMCRLRAEKEGWTVVEEYSDHAISGSSMIQRPGIQALI--LD 63
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
S F +L + R R D + Y+++C IK+ +E +I +Q+ +
Sbjct: 64 SSRGRFDMVLAEALDRISRDQE-DIAGIYKRMCYA-DIKMFTLSE----GEI-TQLHVGL 116
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRKS 188
K + ++L +K G + +E G + GG +G D +F+ G+ +
Sbjct: 117 KGTMNALFLKDLADKTRRGLRGRVEDG-KSGGGNSYGY-------DVVKRFD---GNGEP 165
Query: 189 LQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVH- 247
++ DR I E + +I +I+ D+ + R IA +LN + + W +H
Sbjct: 166 IRGDRTI----NEAQAAVIRRIFADY-DSGLSSRTIAMTLNREGVPGPMGREWGPSTIHG 220
Query: 248 ------QILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEAIIPQPLF 297
IL NE YVG VWN+ K TG+ + NPES+WV + I+ Q L+
Sbjct: 221 NRERGTGILNNELYVGRLVWNRLRYVKDPDTGRRVSRLNPESEWVTQDVPDLRIVDQALW 280
Query: 298 NAAQA 302
+A +A
Sbjct: 281 DAVKA 285
>gi|118726462|ref|ZP_01575087.1| Recombinase [Clostridium cellulolyticum H10]
gi|118664117|gb|EAV70754.1| Recombinase [Clostridium cellulolyticum H10]
Length = 547
Score = 65.9 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 109/439 (24%), Positives = 182/439 (41%), Gaps = 63/439 (14%)
Query: 5 NLAVAY-IRMSTEHQE--FSPDIQRRFIQKYAKE-QGLILTREYLDEGRSGLSAEKRPQF 60
NL V Y R+STE E S Q + Y K Q Y+DEG SG S KR F
Sbjct: 20 NLRVTYYARVSTEKDEQVHSLKNQIEYYSDYIKRNQKWTYVEGYIDEGISGTSVNKRESF 79
Query: 61 LSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDI 120
L +I+ + G DF I+ +ISR+ R N +S Y Q G+ V + ++
Sbjct: 80 LKMISDAKLGKFDF--IITKEISRFSR--NTLDSIKYTQELLSYGVGVLFQSDNINTLMP 135
Query: 121 GSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFE 180
+++ + A + R++ E+V G K IE+G G +G R+
Sbjct: 136 DAELRLTIMSSIAQDEVRKISERVKFGFKRAIEKGVVLGNNKIWGYRK------------ 183
Query: 181 LKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTR 240
D L D E E +I+ I+ + R+ R I+ L+ I +
Sbjct: 184 ----DNGKLVID--------EKEAEIVRLIFDMYATRNMGIRGISTKLDNMGIRNNNGNP 231
Query: 241 WTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPE------SQWV--RVENAFEAII 292
++ + IL N KY+G+ C +KT K K E ++WV + E I+
Sbjct: 232 FSFSTIKSILTNPKYMGY-----YCGNKTHKFDYKLHERKYLDQTEWVMYKDEETVPPIV 286
Query: 293 PQPLFNAAQAIIHQRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCP---SSSAYSS 349
+ +++ A I+ RS K + E+ +T + K SG II + P S YSS
Sbjct: 287 SEEIWHKANYILKGRSEKQSAED-----KTSYQNKYAYSGKIICTEHNVPYYRSLYRYSS 341
Query: 350 RFGSLIRTYAMIHYEPE----RDYHYVEINRLMRQQYKKIV---QQVLNEIIALG---GR 399
+ + + E + E+ ++++ Y +I+ ++++E++A+ G
Sbjct: 342 GNKEVWQCKKYVEKGKEGCTAPSIYTSELEMIIKKAYDEIIVNRSEIIHEMVAMYSSLGS 401
Query: 400 VSIAPNDLLKINEEFTASL 418
S D+ K+ E L
Sbjct: 402 QSKIKEDIAKVKMEINQIL 420
>gi|83582441|emb|CAJ45365.1| hypothetical protein [Streptococcus dysgalactiae subsp.
equisimilis]
Length = 370
Score = 65.9 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 95/340 (27%), Positives = 150/340 (44%), Gaps = 43/340 (12%)
Query: 9 AYIRMST--EHQEFSPDIQRR-FIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
AY R+ST E Q S ++Q++ + ++ I+ Y D+G SG S ++R QF +++
Sbjct: 46 AYCRVSTFDESQSGSFELQKQTYTERINSNPDWIMAGIYADQGASGTSIKRREQFQQMLH 105
Query: 66 FVQSGNADFSHILVYDISRWGR----FLNIDESAHYEQICSKMGIKVHYCAE-PFKGNDI 120
+ GN D I+V +SR+ R F++I + + +GI Y A+ D
Sbjct: 106 DCRCGNIDL--IIVKSVSRFARNQLDFISI--YRELKALSPPVGI---YIADINLNTLDT 158
Query: 121 GSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFE 180
S+ + A E +K + ++IER F++G P L + D
Sbjct: 159 NSEFILGIMAIVAQG---ESEQKSASITWSVIER-FKRGIPMIPTHNLLGYTKD------ 208
Query: 181 LKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRN-T 239
Q RV++ E E KI+ IY +I T +IA +L I T
Sbjct: 209 ---------QYGRVVI---DETEAKIVRLIYDSYI-EGMTASEIASTLMTNHIPTVTGLE 255
Query: 240 RWTKGVVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQPLF 297
RWT V+ IL NEKY G + K+ T + K R N E R++N +IIP+ +
Sbjct: 256 RWTSLAVYNILRNEKYKGEIIMQKTFTVDCFSHKTRKNNGEKPKYRLKNGIPSIIPESRW 315
Query: 298 NAAQAIIHQ--RSIKLTDEEMLDKLRTLLKVKGKLSGLII 335
+ Q ++ Q R K T E + KL GKL ++
Sbjct: 316 DLVQELLKQPRRKSKSTSEIFVPKLYIKKLKSGKLRDFVV 355
>gi|92116189|ref|YP_575918.1| Recombinase [Nitrobacter hamburgensis X14]
gi|91799083|gb|ABE61458.1| Recombinase [Nitrobacter hamburgensis X14]
Length = 547
Score = 65.9 bits (159), Expect = 7e-09, Method: Composition-based stats.
Identities = 76/314 (24%), Positives = 138/314 (43%), Gaps = 35/314 (11%)
Query: 7 AVAYIRMSTEHQEFS----PDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLS 62
A Y+R+ST Q S PD QRR + K +G + E++D G SG + +KRP+
Sbjct: 15 AALYLRVSTGRQAESDLSIPD-QRRQGIAFCKARGWEVAAEFVDAGLSG-TDDKRPELQR 72
Query: 63 LINFVQSGNADFSHILVYDISRWGRFLNIDESA--HYEQICSKMGIKVHYCAEPFKGNDI 120
L++ S + F I+V+ SR+ R D A ++ + K G+++ + G+D
Sbjct: 73 LLDLATSDGSPFDVIIVHSFSRFAR----DHFALEYHVRRLRKSGVRLVSMTQDL-GDDP 127
Query: 121 GSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFE 180
S + + V +E + V + +GF G A FG ++
Sbjct: 128 MSVMVRQVFALFDEYQSKENAKHVLRAMQENARQGFWNGSAAPFG-------------YQ 174
Query: 181 LKTGDRKSLQSDRVILIAGPEFEQ-KIILQIYH--DFIYRHKTERQIADSLNAQVILTDR 237
+ +++ ++ + + I E E ++I ++ D + + LN T R
Sbjct: 175 VVAAEQRGAKTKKKLAIDPVEAETVRLIFRLLREGDGTIGPMGVKAVVVWLNGHGYRTRR 234
Query: 238 NTRWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLF 297
RW G +H+++ N Y G +N++ K R P ++ + V +AII +F
Sbjct: 235 GARWGIGPLHKLVTNPVYKGEAHFNRT----DSKTRTAKPATEHIIV--PVDAIIDPAIF 288
Query: 298 NAAQAIIHQRSIKL 311
+A QA + R+ K+
Sbjct: 289 DAVQAQLKARNPKV 302
>gi|147668748|ref|YP_001213566.1| Resolvase, N-terminal domain [Dehalococcoides sp. BAV1]
gi|146269696|gb|ABQ16688.1| Resolvase, N-terminal domain [Dehalococcoides sp. BAV1]
Length = 211
Score = 65.5 bits (158), Expect = 8e-09, Method: Composition-based stats.
Identities = 51/160 (31%), Positives = 75/160 (46%), Gaps = 6/160 (3%)
Query: 10 YIRMSTEHQ--EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFV 67
Y R+S+E Q E S Q R ++ YA + + E++DE SG +A RP+F +I
Sbjct: 6 YARVSSEAQDVELSIAAQLRALRDYAAKNEQQIVYEFIDEAESGRTAS-RPEFKKMIALA 64
Query: 68 QSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKA 127
+S + F ILV+ SR+ R N +S Y+ + K GIKV EP G ++ +
Sbjct: 65 KSNTSPFEAILVWKYSRFAR--NRVDSITYKTLLQKKGIKVISINEPLDDTPTG-KLMEG 121
Query: 128 VKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLR 167
+ Y LG+ + G K RGF G G R
Sbjct: 122 IIESLDEFYSANLGQDIKRGMKENALRGFFNGSQPPLGYR 161
>gi|154244771|ref|YP_001415729.1| Recombinase [Xanthobacter autotrophicus Py2]
gi|154158856|gb|ABS66072.1| Recombinase [Xanthobacter autotrophicus Py2]
Length = 662
Score = 65.1 bits (157), Expect = 1e-08, Method: Composition-based stats.
Identities = 89/339 (26%), Positives = 151/339 (44%), Gaps = 42/339 (12%)
Query: 10 YIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R S+++Q + S Q R + +A++QG + EY D SG S RP +L+
Sbjct: 6 YARYSSDNQRDASIADQFRMCRLHAEKQGWHIVEEYSDHAISGASL-IRPGIQALMADAM 64
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
G D IL + R R + ++ A + S +K+ +E ++ + + +
Sbjct: 65 GGRFDL--ILAEAMDRLSR--DQEDIAGIFKRMSYADVKMFTLSE----GEV-THLHVGL 115
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPA-GFGLRRLLLSADGSPKFELKTGDRK 187
K + ++L +K GQ+ +E G GG A G+ + + A+G P
Sbjct: 116 KGTMNALFLKDLADKTRRGQRGRVEAGKSGGGNAYGYDVVKKF-DANGEP---------- 164
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVH 247
++ DR I EF+ +++ +I+ D+ K+ + IA +LN + I W ++
Sbjct: 165 -IRGDRTI----NEFQAEVVRRIFRDYA-AGKSAKTIAFALNKEGIPAPSGGDWGFSTIN 218
Query: 248 Q-------ILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEAIIPQPL 296
IL NE Y+G VWN+ K TGK + + NPE +WV E I+ L
Sbjct: 219 GNPKRGNGILNNEMYIGKIVWNRQRFVKDPNTGKRQARPNPEEEWVIQEAPELRILDDDL 278
Query: 297 FNAAQAIIHQRSI--KLTDEEMLDKLRTLLKVKGKLSGL 333
++A +A + I K E L ++ T + K SGL
Sbjct: 279 WSAVKARQEKNKIARKENGEADLSRINTRRRPKYLFSGL 317
>gi|150391699|ref|YP_001321748.1| Resolvase, N-terminal domain [Alkaliphilus metalliredigens QYMF]
gi|149951561|gb|ABR50089.1| Resolvase, N-terminal domain [Alkaliphilus metalliredigens QYMF]
Length = 521
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 81/312 (25%), Positives = 130/312 (41%), Gaps = 42/312 (13%)
Query: 9 AYIRMSTEH--QEFSPDIQRRFIQKYAKEQ------GLILTREYLDEGRSGLSAEKRPQF 60
AY R+ST+ Q S QR + Y K GL Y DEG SG EKR +
Sbjct: 24 AYARVSTDSDDQLVSLKAQRVHYENYIKSNPEWEFAGL-----YYDEGISGTKKEKRLEL 78
Query: 61 LSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDI 120
L +I +S DF I+ ISR+ R N + + +G+ +++ E D+
Sbjct: 79 LRMIRDCESNRIDF--IITKSISRFAR--NTTDCLELVRHLMDIGVYIYFEKENLNTGDM 134
Query: 121 GSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFE 180
S++ ++ A E + + I + F+ G G+P +
Sbjct: 135 ESELMLSILSGFAAEESASISQNTTWS----ISKKFQNGS-----------YIIGTPPY- 178
Query: 181 LKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTR 240
++ + VI+ PE E +II +I+ + + K IA LN I R
Sbjct: 179 ----GYANVNGEMVIV---PE-EAEIIKRIFAECL-SGKGGSVIAKGLNRDKIPARRGNH 229
Query: 241 WTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAA 300
W+ G V +L NEKY G ++ K+ T N E ++ E II + +F+ A
Sbjct: 230 WSSGTVIDMLRNEKYKGDVLFQKTYTDSNFNRHINNGEKNQFYCKDHHEPIISREVFSKA 289
Query: 301 QAIIHQRSIKLT 312
Q +I QR+ ++
Sbjct: 290 QKLITQRAKSMS 301
>gi|125974177|ref|YP_001038087.1| Recombinase [Clostridium thermocellum ATCC 27405]
gi|125714402|gb|ABN52894.1| Recombinase [Clostridium thermocellum ATCC 27405]
Length = 522
Score = 64.7 bits (156), Expect = 1e-08, Method: Composition-based stats.
Identities = 83/310 (26%), Positives = 138/310 (44%), Gaps = 39/310 (12%)
Query: 9 AYIRMSTEHQEFSPDIQRRFIQKYAKEQG---LILTREYLDEGRSGLSAEKRPQFLSLIN 65
AY R+ST+ +E + + A QG +L + D+G SG + +KR +F +I+
Sbjct: 31 AYCRVSTDSEEQATSYDTQIEHYTAYIQGHPDWMLAGIFADDGISGTNTKKREEFNRMID 90
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
+GN D I+ ISR+ R N + Y + I V++ E D ++
Sbjct: 91 ECMAGNIDM--IITKSISRFAR--NTLDCLKYIRQLKDKNIPVYFEKENINTMDSKGEVM 146
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
+ A + + L + V G + ++G Q A F L + D
Sbjct: 147 LTIMASLAQQESQSLSQNVKLGLQYRYQQGEIQVNCARF----LGYTKD----------- 191
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDR-NTRWTKG 244
++ R++++ PE E +I+ +IY +++ + +IA L A IL N RW
Sbjct: 192 ----ENKRLVVV--PE-EAEIVKRIYREYL-EGASMLKIARGLEADGILNGAGNERWHTS 243
Query: 245 VVHQILINEKYVGHNVWNKS-----CTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNA 299
++ IL NEKY+G + K+ T K K G P+ VEN+ EAIIP+ +F
Sbjct: 244 NINNILRNEKYIGDALLQKTYTVDFLTKKRVKNNGIVPQ---YYVENSHEAIIPREVFMQ 300
Query: 300 AQAIIHQRSI 309
Q + +R I
Sbjct: 301 VQEELIRRRI 310
>gi|154483745|ref|ZP_02026193.1| hypothetical protein EUBVEN_01449 [Eubacterium ventriosum ATCC
27560]
gi|149735236|gb|EDM51122.1| hypothetical protein EUBVEN_01449 [Eubacterium ventriosum ATCC
27560]
Length = 542
Score = 64.7 bits (156), Expect = 2e-08, Method: Composition-based stats.
Identities = 86/324 (26%), Positives = 140/324 (43%), Gaps = 54/324 (16%)
Query: 7 AVAYIRMS-TEHQEFSPDI---QRRFIQKY-AKEQGLILTREYLDEGRSGLSAEKRPQFL 61
A+ YIR+S T+ + D QRR I Y A+ + + E +D+G SG+ + RP F
Sbjct: 6 AIKYIRLSYTDDKTVESDSVANQRRLIDDYIARHPEIEVVAEKIDDGYSGVLFD-RPAFQ 64
Query: 62 SLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKG-NDI 120
++ ++ G A+ ++V D+SR GR I+ + ++ G++ + ND
Sbjct: 65 EMMRMIEQGEANC--VIVKDLSRLGREY-IETGRYMRRVFPAYGVRFIAINDNVDTENDA 121
Query: 121 GSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFE 180
+ +VK YCR++ K ++ +E R G G + G
Sbjct: 122 ADDLTVSVKNIMNEAYCRDISVKT----RSALEVKRRSGDFVG------AFTIYGY---- 167
Query: 181 LKTGDR-KSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVIL----- 234
+K GD+ KSL+ D E+ ++ I+ + + IAD LN IL
Sbjct: 168 VKVGDKHKSLEVD--------EYAANVVRDIFRKRL-EGFSASHIADELNRLGILSPLAY 218
Query: 235 -------------TDR-NTRWTKGVVHQILINEKYVGHNVWNKSCTSKTG-KLRGKNPES 279
TDR + +W+ + +IL +E Y G V K T K R P S
Sbjct: 219 KRNHGMPHAKGGYTDRKDCKWSATTIIRILQDETYTGTLVQGKQTTPHFKLKEREDKPSS 278
Query: 280 QWVRVENAFEAIIPQPLFNAAQAI 303
+W+RVE EAII + F+ Q +
Sbjct: 279 EWIRVEGTHEAIIQKHDFDLVQRL 302
>gi|57234193|ref|YP_181782.1| site-specific recombinase, phage integrase family [Dehalococcoides
ethenogenes 195]
gi|57224641|gb|AAW39698.1| site-specific recombinase, phage integrase family [Dehalococcoides
ethenogenes 195]
Length = 518
Score = 64.3 bits (155), Expect = 2e-08, Method: Composition-based stats.
Identities = 86/315 (27%), Positives = 139/315 (44%), Gaps = 34/315 (10%)
Query: 2 EYKNLAVA-YIRMSTE--HQEFSPDIQRRFIQKY-AKEQGLILTREYLDEGRSGLSAEKR 57
E K L VA Y R+ST+ QE S + Q +Y K L + D+G SG + +KR
Sbjct: 17 EQKKLRVAAYCRVSTDSDEQESSYEAQVTHYTEYIQKNPDWELAGIFADDGISGTNTKKR 76
Query: 58 PQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKG 117
+F +I+ SGN D I+ ISR+ R N + Y + I V++ E
Sbjct: 77 DEFNRMIDECMSGNIDM--IITKSISRFAR--NTLDCLQYIRQLKDKNIPVYFEKESINT 132
Query: 118 NDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSP 177
D ++ + A + + + E + G ++ ++QG R L + D
Sbjct: 133 LDAKGEVLLTIMASLAQQESQSMSENIKLG----LQYRYQQGKVQVNHNRFLGYTKD--- 185
Query: 178 KFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDR 237
+ G+ L+ PE + +I+ +IY +++ ++ IA L A ILT
Sbjct: 186 ----ENGN----------LVIDPE-QAEIVKRIYREYLEGSSMDK-IASGLMADGILTGA 229
Query: 238 -NTRWTKGVVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQ 294
+W +++IL NEKY+G + K+ T+ T K N VE EAIIP+
Sbjct: 230 GKEKWHTSTINKILRNEKYMGDALLQKTYTTDFLTKKRIKNNGTVPQYYVEGDHEAIIPK 289
Query: 295 PLFNAAQAIIHQRSI 309
LF QA + +R +
Sbjct: 290 DLFMQVQAELVRRRV 304
>gi|83944731|ref|ZP_00957097.1| resolvase [Oceanicaulis alexandrii HTCC2633]
gi|83851513|gb|EAP89368.1| resolvase [Oceanicaulis alexandrii HTCC2633]
Length = 556
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 77/309 (24%), Positives = 128/309 (41%), Gaps = 26/309 (8%)
Query: 7 AVAYIRMST----EHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLS 62
A Y+R+ST EH PD Q+R + + + +G L Y++ G S + +KRP+F
Sbjct: 12 AALYLRVSTTRQAEHDVSIPD-QKRQGEAWCEARGYELVETYVEPGASA-TNDKRPEFQR 69
Query: 63 LINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGS 122
+I S + F ++V+ SR+ F + E Y + +K G+K+ + G+D
Sbjct: 70 MIEAGTSKPSAFDIVVVHSFSRF--FRDHFELEFYVRKLAKNGVKLVSITQEM-GDDPMH 126
Query: 123 QIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELK 182
+ + + +E + V K +GF G G R +++A+ K
Sbjct: 127 VMMRQIMALFDEYQSKENAKHVLRALKENARQGFWNGSRPPVGYR--VVAAEQRGAKTKK 184
Query: 183 TGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWT 242
+ L +D + LI L + D + IA LN + I T RW
Sbjct: 185 KLEIDPLHADTIRLIYR--------LALEGDGTRGAMGVKAIATHLNGRGIFTRDGGRWG 236
Query: 243 KGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQA 302
G VH+IL Y+G + W K + K P V II + F+A Q
Sbjct: 237 IGQVHRILTRRTYIGEHQWGK-------HRKNKEPTKPEDLVTVPVPPIIDRKTFDAVQK 289
Query: 303 IIHQRSIKL 311
++ R+ K+
Sbjct: 290 LMQARNPKV 298
>gi|154250558|ref|YP_001411382.1| Resolvase domain [Parvibaculum lavamentivorans DS-1]
gi|154154508|gb|ABS61725.1| Resolvase domain [Parvibaculum lavamentivorans DS-1]
Length = 537
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 72/317 (22%), Positives = 140/317 (44%), Gaps = 39/317 (12%)
Query: 7 AVAYIRMSTEHQ---EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSL 63
A+ Y R+ST Q + S Q ++Y KE+ + + Y+D G S + RPQF +
Sbjct: 5 AIVYARVSTTRQADHDLSIPDQIAHAERYCKERDIEIVGTYVDPGASARD-DNRPQFQRM 63
Query: 64 INFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIK-VHYCAEPFKG--NDI 120
++ V+SG +LV+ SR+ F + +A Y +I K G + V E +G ++
Sbjct: 64 MDDVKSGAMQVDVVLVHSFSRF--FRDACGAAVYTRILEKHGARLVSMTQETGEGAQANL 121
Query: 121 GSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFE 180
+ + + + E + + + K RGF G A +G + +++ G+
Sbjct: 122 MRHMLSSFDEYQSAETAKHVTRSMIENAK----RGFWNGAAAPYGYKTIVVERHGNK--- 174
Query: 181 LKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTE-----RQIADSLNAQVILT 235
D+K L + P+ E +I+ I+ ++Y + + LN + +
Sbjct: 175 ----DKKKLDLE-------PQ-EAEIVKLIFQLYLYGDGKTGPLGIKNLVSYLNGRGVNN 222
Query: 236 DRNTRWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQP 295
+ + + L Y+G + +N++ S+T K R P +W+ + A I+ +
Sbjct: 223 RNGKPFRIQHIQEALRRSAYIGTHYFNRT-DSRTRKPR---PREEWIEI--AVPPIVEES 276
Query: 296 LFNAAQAIIHQRSIKLT 312
+F+A QA + R+ +T
Sbjct: 277 IFHAVQAQLDARNPTMT 293
>gi|50914514|ref|YP_060486.1| Site-specific recombinase [Streptococcus pyogenes MGAS10394]
gi|10119925|gb|AAG12996.1|AF227520_2 unknown [Streptococcus pneumoniae]
gi|18478328|gb|AAL73127.1|AF227521_2 unknown [Streptococcus pyogenes]
gi|40218532|gb|AAR83186.1| site-specific recombinase [Streptococcus pyogenes]
gi|50261577|gb|AAT72345.1| site-specific recombinase [Streptococcus pyogenes]
gi|50903588|gb|AAT87303.1| Site-specific recombinase [Streptococcus pyogenes MGAS10394]
Length = 370
Score = 63.5 bits (153), Expect = 4e-08, Method: Composition-based stats.
Identities = 93/337 (27%), Positives = 147/337 (43%), Gaps = 37/337 (10%)
Query: 9 AYIRMST--EHQEFSPDIQRR-FIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
AY R+ST E Q S ++Q++ + ++ I+ Y D+G SG S ++R QF +++
Sbjct: 46 AYCRVSTFDESQSGSFELQKQTYTERINSNPDWIMAGIYADQGASGTSIKRREQFQQMLH 105
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN--DIGSQ 123
+ G D I+V +SR+ R +D + Y ++ + V E N D S+
Sbjct: 106 DCRCGKIDL--IIVKSVSRFARN-QLDFISIYREL-KALSPPVGIYIEDINLNTLDTNSE 161
Query: 124 IFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKT 183
+ A E +K + ++IER F++G P L + D
Sbjct: 162 FILGIMAIVAQG---ESEQKSASITWSVIER-FKRGIPMIPTHNLLGYTKD--------- 208
Query: 184 GDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRN-TRWT 242
Q RV++ E E KI+ IY +I T +IA +L I T RWT
Sbjct: 209 ------QYGRVVI---DETEAKIVRLIYDSYI-EGMTASEIASTLMTNHIPTVTGLERWT 258
Query: 243 KGVVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQPLFNAA 300
V+ IL NEKY G + K+ T + K R N E R++N +IIP+ ++
Sbjct: 259 SLAVYNILRNEKYKGEIIMQKTYTVDCFSHKTRKNNGEKPKYRLKNGIPSIIPESRWDLV 318
Query: 301 QAIIHQ--RSIKLTDEEMLDKLRTLLKVKGKLSGLII 335
Q ++ Q R K T E + KL GKL ++
Sbjct: 319 QELLKQPRRKSKSTSEIFVPKLYIKKLKSGKLRDFVV 355
>gi|94995113|ref|YP_603211.1| Site-specific recombinase [Streptococcus pyogenes MGAS10750]
gi|94548621|gb|ABF38667.1| Site-specific recombinase [Streptococcus pyogenes MGAS10750]
Length = 557
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 82/355 (23%), Positives = 158/355 (44%), Gaps = 43/355 (12%)
Query: 4 KNLAVAYIRMSTEH----QEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQ 59
+ A Y+R+S E + S QR+ I+ YA++ + EY+D+G SG S RP+
Sbjct: 3 EKFACMYLRLSREDGDSTESNSISNQRQIIKSYARDNDFKVVAEYVDDGFSG-SNFDRPK 61
Query: 60 FLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKV-----HYCAEP 114
F +I ++ F I+V D+SR+GR I+ + ++I + GI+ +Y +E
Sbjct: 62 FKKMIQDLEE--KKFKTIIVKDLSRFGRDY-IESGKYLQKIFPEKGIRFISVNDNYDSEN 118
Query: 115 FKGNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSAD 174
+D + + ++ + YCR++ KV + ++ + G G A FG ++ D
Sbjct: 119 ADVSD--THLILPIRNFINDSYCRDISMKVKSSKEIKRKNGEFIGAFAPFGYKK-----D 171
Query: 175 GSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDF--IYRHKTERQIADSLNAQV 232
K +L S +R+ + + K I + + K + D+
Sbjct: 172 SKNKHKLVVDTEVSHIIERIFNMKIDGYSSKAIADFLNSIGCVTPSKHKENSGDNHTTGF 231
Query: 233 ILTDRNTRWTKGVVHQILINEKYVGHNVWNKSCTSK---TGKLRGKNPESQWVRVENAFE 289
I+ D ++W +V++I+ N+ Y+G V + T K K + E W+ + ++ +
Sbjct: 232 IVKD--SKWDAKMVNRIITNKVYIG--VLEQGKTRKLNYKSKREVEVNEEDWIVINDSHK 287
Query: 290 AIIPQPLFNAAQAIIHQRSIKLTDEEMLDKLRTLLKVKGKLSGLIIDEAEDCPSS 344
II + ++ L ++ ML ++ + LSG++ +DC SS
Sbjct: 288 PIISKSIY------------ALANKMMLRDVKQSADIPHILSGMLY--CKDCGSS 328
>gi|90422509|ref|YP_530879.1| Recombinase [Rhodopseudomonas palustris BisB18]
gi|90104523|gb|ABD86560.1| Recombinase [Rhodopseudomonas palustris BisB18]
Length = 542
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 89/311 (28%), Positives = 127/311 (40%), Gaps = 45/311 (14%)
Query: 10 YIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R S++ Q + S D Q F ++ G+ + + D S SA+ RP F++L+
Sbjct: 7 YARFSSDLQNDKSVDDQIAFCREVCARNGMTVVLTFEDRAVSASSAKNRPGFVALMR--A 64
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
+ F I+ D+ R R +A E +GI +H ++I A+
Sbjct: 65 AAARLFDVIVAEDMDRIFRDQADYHAARKE--LDFLGITIHTATGKV------TKIDGAL 116
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRKS 188
+ Y L V G + +I G GG A +G + GSP EL D ++
Sbjct: 117 RALMGEMYLENLALHVRRGLEGVIRDGRHAGGRA-YGYS----TVPGSPG-ELVIDDAQA 170
Query: 189 LQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVV-- 246
KI+ I+ F+ T R IA LNA I R TRW +
Sbjct: 171 ----------------KIVQHIFARFV-AGVTPRAIAAELNADRIAAPRGTRWNASTING 213
Query: 247 -----HQILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEAIIPQPLF 297
H +L+NE Y G VWNK K TGK + NP+ Q E II +
Sbjct: 214 NNARGHGMLLNELYAGRIVWNKVRMVKDPTTGKRISRINPKEQHRITEAPQLRIIDDVTW 273
Query: 298 NAAQAIIHQRS 308
NAAQAI +RS
Sbjct: 274 NAAQAIKLKRS 284
>gi|75677316|ref|YP_319737.1| resolvase [Nitrobacter winogradskyi Nb-255]
gi|74422186|gb|ABA06385.1| resolvase [Nitrobacter winogradskyi Nb-255]
Length = 561
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 79/317 (24%), Positives = 134/317 (42%), Gaps = 39/317 (12%)
Query: 7 AVAYIRMST----EHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLS 62
A Y+R+ST EH PD QR +Q + + G E+++ G S + ++RP F
Sbjct: 25 AALYMRVSTGRQAEHDLSIPD-QRHQLQSWCRAHGYEPAAEFVEAGASA-TDDRRPIFQQ 82
Query: 63 LINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPF--KGNDI 120
+I G F I+V+ SR+ F E Y + ++ ++V +P + +
Sbjct: 83 MIERACDGENAFDVIIVHSYSRF--FREAFEQEFYLRKLARHKVRVVSITQPVGDENEPV 140
Query: 121 GSQIFKAVKRWSAGEY-CRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKF 179
+ + K + + EY RE + V K +GF G A G + + G
Sbjct: 141 HAMMRKVIALFD--EYQSRENAKHVIRSMKENARQGFWNGATAPLGYKLVEAEKRG---- 194
Query: 180 ELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTE-----RQIADSLNAQVIL 234
T +K L D V E + + IY ++Y T +++ LN
Sbjct: 195 ---TKIKKKLDVDAV--------EAEYVRLIYKLYLYGDGTSGALGIKEVVKWLNRNGYR 243
Query: 235 TDRNTRWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQ 294
T R + VH++L N Y+G W + TS + R + P+++ V++ A AII
Sbjct: 244 TRRGQTFGVAGVHKVLTNTVYIGE--WQFNVTSS--RTRQRKPDTEIVKI--AVPAIIEP 297
Query: 295 PLFNAAQAIIHQRSIKL 311
+F QA + RS ++
Sbjct: 298 HVFEQVQAQLRARSPRV 314
>gi|154484855|ref|ZP_02027303.1| hypothetical protein EUBVEN_02573 [Eubacterium ventriosum ATCC
27560]
gi|149733808|gb|EDM49927.1| hypothetical protein EUBVEN_02573 [Eubacterium ventriosum ATCC
27560]
Length = 516
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 82/337 (24%), Positives = 143/337 (42%), Gaps = 73/337 (21%)
Query: 6 LAVAYIRMSTEHQEFSPD---------IQRRFIQKYAKEQGLIL---TREYLDEGRSGLS 53
+ YIR+S E ++ S + QR ++ Y + + +EY D+G +G
Sbjct: 4 ITAMYIRLSMEDEDVSLNRKEESNSVSSQRELLKAYIENHSELKDTKVQEYCDDGFTGTK 63
Query: 54 AEKRPQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKV----- 108
E RP + L+ +++ S I+V D+SR GR I+ + EQI ++V
Sbjct: 64 FE-RPGYTKLMEDIRA--EKISCIVVKDLSRLGRDY-IEVGSLLEQILPLYQVRVIAVND 119
Query: 109 HYCAEPFKGNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRR 168
+Y ++ + G+ G + A K Y R+L K+ + + I G G
Sbjct: 120 NYDSDNYDGSTGGMNV--AFKNLIYMLYSRDLSNKICSAKHTRILNGENISG-------- 169
Query: 169 LLLSADGSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSL 228
+L+ G K +D+ +I PE + ++++ + + K + ++A+ L
Sbjct: 170 -----------QLRYGYVKD-PNDKHKIIVDPEAAE--VVKLIFELTAQGKRKTEVANYL 215
Query: 229 NAQVILT-----------------DRNTRWTKGVVHQILINEKYVGHNVWNKSCTSKTGK 271
NA I T + + W+ + IL +E Y+G +WNK T K
Sbjct: 216 NAHGIDTPSAYKKRKGSKNFFHAVEVKSLWSTSSIRDILNDEVYLGKLIWNK-----TKK 270
Query: 272 LRGKN------PESQWVRVENAFEAIIPQPLFNAAQA 302
G N P+ +W+ +EN E II Q LF+ A A
Sbjct: 271 RVGSNNTSTYVPKDEWIVIENCHEPIITQKLFDMAHA 307
>gi|153010458|ref|YP_001371672.1| Recombinase [Ochrobactrum anthropi ATCC 49188]
gi|151562346|gb|ABS15843.1| Recombinase [Ochrobactrum anthropi ATCC 49188]
Length = 551
Score = 63.2 bits (152), Expect = 4e-08, Method: Composition-based stats.
Identities = 90/339 (26%), Positives = 151/339 (44%), Gaps = 42/339 (12%)
Query: 10 YIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R S+++Q + S Q R + +A++QG + EY D SG S RP +L+
Sbjct: 6 YARYSSDNQRDASIADQFRMCRLHAEKQGWHIVEEYSDHAISGASL-IRPGIQALMADAM 64
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
G D IL + R R + ++ A + S +K+ +E ++ + + +
Sbjct: 65 GGRFDL--ILAEAMDRLSR--DQEDIAGIFKRMSYADVKMFTLSE----GEV-THLHVGL 115
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPA-GFGLRRLLLSADGSPKFELKTGDRK 187
K + ++L +K GQ+ +E G GG A G+ + + A+G P
Sbjct: 116 KGTMNALFLKDLADKTRRGQRGRVEAGKSGGGNAYGYDVVKKF-DANGEP---------- 164
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVH 247
++ DR I EF+ +++ +I+ D+ K+ + IA +LN + I W ++
Sbjct: 165 -IRGDRTI----NEFQAEVVRRIFRDYA-AGKSAKTIAFALNKEGIPAPSGGDWGFSTIN 218
Query: 248 Q-------ILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEAIIPQPL 296
IL NE YVG VWN+ K TGK + + NPE +WV E I+ L
Sbjct: 219 GNPKRGNGILNNEMYVGKIVWNRQRFVKDPSTGKRQARPNPEEEWVIQEAPELRILDDDL 278
Query: 297 FNAAQAIIHQRSI--KLTDEEMLDKLRTLLKVKGKLSGL 333
++A +A + I K E L ++ T + K SGL
Sbjct: 279 WSAVKARQEKNKIARKENGEADLSRINTRRRPKYLFSGL 317
>gi|154484024|ref|ZP_02026472.1| hypothetical protein EUBVEN_01732 [Eubacterium ventriosum ATCC
27560]
gi|149735066|gb|EDM50952.1| hypothetical protein EUBVEN_01732 [Eubacterium ventriosum ATCC
27560]
Length = 522
Score = 62.4 bits (150), Expect = 7e-08, Method: Composition-based stats.
Identities = 79/322 (24%), Positives = 135/322 (41%), Gaps = 28/322 (8%)
Query: 1 MEYKNLAVAYIRMSTEHQEFSPDI--------QRRFIQKYAKEQGLILTREYLDEGRSGL 52
+E K+ Y R+S E + + Q+ + +Y+ E G + Y D+ +G
Sbjct: 2 IESKSRVAIYCRLSEEDRNKQSETDDSNSIQNQKSMLLQYSLEHGWEVYNIYSDDDYTG- 60
Query: 53 SAEKRPQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIK----V 108
S +RP+F L+ + N F +L SR+ R L + E + + GI+ V
Sbjct: 61 SDRRRPEFNRLLE--DAKNRKFDIVLCKTQSRFTRELELVEK-YIHGLFPLWGIRFISIV 117
Query: 109 HYCAEPFKGNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRR 168
KGN QI V W Y ++ E + + + + G G A +G ++
Sbjct: 118 DNADTANKGNKKSRQINGLVNEW----YLEDMSENIKSVLTDRRKNGHHIGAFALYGYKK 173
Query: 169 LLLSADGSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSL 228
D K L + + V + + + I ++ +D + TE + L
Sbjct: 174 -----DPDVKGHLIIDEEAAEVVREVFTLFSQGYGKTAIARMLNDRGIPNPTEYKRLHGL 228
Query: 229 NAQVILTDRNTRWTKGVVHQILINEKYVGHNVWNK--SCTSKTGKLRGKNPESQWVRVEN 286
+ T NT W + +L+NE Y+G+ V K S + KT K P+ QW RVE
Sbjct: 229 RYKQPKTKNNTLWKYFNISDMLVNEMYIGNMVQGKYGSISYKT-KQNKPRPKDQWYRVEG 287
Query: 287 AFEAIIPQPLFNAAQAIIHQRS 308
E II + L++ QA++ Q++
Sbjct: 288 THEPIIERELWDRVQAMVAQKA 309
>gi|91978420|ref|YP_571079.1| Recombinase [Rhodopseudomonas palustris BisB5]
gi|91684876|gb|ABE41178.1| Recombinase [Rhodopseudomonas palustris BisB5]
Length = 542
Score = 62.4 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 85/314 (27%), Positives = 129/314 (41%), Gaps = 51/314 (16%)
Query: 10 YIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R S++ Q + S D Q F ++ G+ + + D S SA+ RP F++L+
Sbjct: 7 YARFSSDLQNDKSVDDQIAFCREVCARNGMTVVLTFEDRAVSASSAKNRPGFIALMRAAS 66
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKM---GIKVHYCAEPFKGNDIGSQIF 125
+ F ++ D+ R R + A Y ++ GI +H ++I
Sbjct: 67 A--RLFDVVVAEDMDRIFR-----DQADYHAARKELDFLGITIHTATGKV------TKID 113
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
A++ Y L V G + +I G GG A +G + GSP EL D
Sbjct: 114 GALRALMGEMYLENLALHVRRGLEGVIRDGRHAGGRA-YGYS----TVPGSPG-ELVIDD 167
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGV 245
++ KI+ +I+ F+ T R IA LNA + R TRW
Sbjct: 168 AQA----------------KIVQRIFARFV-AGVTPRAIAAELNADRVAPPRGTRWNAST 210
Query: 246 V-------HQILINEKYVGHNVWNKSCTSK---TGKLRGKNPESQWVRVENAFE-AIIPQ 294
+ H +L+NE Y G VWNK K TGK + + R+ A + II
Sbjct: 211 INGNNARGHGMLLNELYAGRIVWNKVRMVKDPTTGKRISRINAKEHHRITEAPQLRIIDD 270
Query: 295 PLFNAAQAIIHQRS 308
+NAAQAI +RS
Sbjct: 271 VTWNAAQAIKLKRS 284
>gi|156869036|gb|EDO62408.1| hypothetical protein CLOLEP_00827 [Clostridium leptum DSM 753]
Length = 537
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 75/281 (26%), Positives = 116/281 (41%), Gaps = 36/281 (12%)
Query: 36 QGLILTREYLDEGRSGLSAEKRPQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESA 95
+G L + DEG SG+ KR QF +I + D IL +SR+ R N +
Sbjct: 59 EGWELAGIFADEGISGVRTNKREQFKEMITLCRKKKIDL--ILTKSVSRFAR--NTLDCI 114
Query: 96 HYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERG 155
H+ ++ GI V + E +D+ S++ A + V G + E G
Sbjct: 115 HHVRLLKSWGISVIFEKEGIDTSDMNSEMILTCLSAFAQAESESISGNVTKGIRMGYENG 174
Query: 156 ---FRQGGPAGFGLRRLLLSADGSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYH 212
FR G+ R+ ADG P+ PE E K I I+
Sbjct: 175 RFTFRYTNCLGY--RK---GADGKPEIH-------------------PE-EAKTIRMIFE 209
Query: 213 DFIYRHKTERQIADSLNAQVILTDR-NTRWTKGVVHQILINEKYVGHNVWNKSCTSK--T 269
+F+ + I L + ILT +T W K + +IL NEKY+G + K+ T
Sbjct: 210 NFLNGDSID-DIKQCLENKGILTPTGHTEWNKQTIVRILKNEKYMGDVLLQKTYTPNLFE 268
Query: 270 GKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIHQRSIK 310
GK + N E ++N AI+ + +F AQ + +R+ K
Sbjct: 269 GKHKKNNGEVTQYYIKNHHPAIVSREMFQLAQEELARRNSK 309
>gi|154483218|ref|ZP_02025666.1| hypothetical protein EUBVEN_00919 [Eubacterium ventriosum ATCC
27560]
gi|149736026|gb|EDM51912.1| hypothetical protein EUBVEN_00919 [Eubacterium ventriosum ATCC
27560]
Length = 597
Score = 61.2 bits (147), Expect = 1e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 10 YIRMSTEHQ--EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFV 67
Y R+ST Q +S D Q+ +++YA+ Q + + EY DEG+SG S E RP+F +++ +
Sbjct: 11 YTRVSTTMQVDGYSLDAQKEKLKRYAEFQNMEIVNEYSDEGKSGKSVEGRPEFQRMLDNI 70
Query: 68 QSGNADFSHILVYDISRWGR 87
++G + +LV+ +SR+GR
Sbjct: 71 ENGTDEVQFVLVFKLSRFGR 90
>gi|56964629|ref|YP_176360.1| site-specific recombinase for integration and excision [Bacillus
clausii KSM-K16]
gi|56910872|dbj|BAD65399.1| site-specific recombinase for integration and excision [Bacillus
clausii KSM-K16]
Length = 467
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 73/306 (23%), Positives = 119/306 (38%), Gaps = 52/306 (16%)
Query: 10 YIRMSTEHQ---EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
YIR+STE Q +S QR +Q Y Q Y+DEG S + E RPQ ++
Sbjct: 6 YIRVSTEEQVNEGYSISAQRERLQAYITSQNWDAVGFYVDEGVSAKNTE-RPQLKRMLKH 64
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF- 125
++ G D +LVY + R R ++ + + G K E + ++F
Sbjct: 65 IEEGFIDV--VLVYRLDRLTR--SVLDLYQLLDTFERNGCKFKSATEVYDTTTAMGRLFI 120
Query: 126 ---KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELK 182
A+ +W LGE+V G G G +G ++ +
Sbjct: 121 TLVAALAQWER----ENLGERVRMGMTQRTREGQWHGSSPAYG-------------YKYE 163
Query: 183 TGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWT 242
G +++ + + I+ IY +I ++R++A LN Q I T + W
Sbjct: 164 NG-----------IVSIDDEKANIVRWIYMSYI-EGMSDRKLAVKLNEQGIPTQKGGAWR 211
Query: 243 KGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQA 302
+ + +IL NE Y G +W + V+ A II Q +F AQ+
Sbjct: 212 ESTIRRILQNETYTGKLMWGVRVNKENA-----------FSVDGAMPKIIEQGIFEKAQS 260
Query: 303 IIHQRS 308
I R+
Sbjct: 261 IRKGRA 266
>gi|154506193|ref|ZP_02042931.1| hypothetical protein RUMGNA_03735 [Ruminococcus gnavus ATCC
29149]
gi|153793692|gb|EDN76112.1| hypothetical protein RUMGNA_03735 [Ruminococcus gnavus ATCC
29149]
Length = 562
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 30/80 (37%), Positives = 52/80 (65%), Gaps = 2/80 (2%)
Query: 10 YIRMSTEHQ--EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFV 67
Y R+ST Q +S D Q+ +++YA+ Q + + EY DEG+SG S E RP+F +++ +
Sbjct: 11 YTRVSTTMQVDGYSLDAQKEKLKRYAEFQNMEIVNEYSDEGKSGKSVEGRPEFQRMLDNI 70
Query: 68 QSGNADFSHILVYDISRWGR 87
++G + +LV+ +SR+GR
Sbjct: 71 ENGTDEVQFVLVFKLSRFGR 90
>gi|154497874|ref|ZP_02036252.1| hypothetical protein BACCAP_01852 [Bacteroides capillosus ATCC
29799]
gi|150273372|gb|EDN00517.1| hypothetical protein BACCAP_01852 [Bacteroides capillosus ATCC
29799]
Length = 543
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 82/316 (25%), Positives = 132/316 (41%), Gaps = 39/316 (12%)
Query: 4 KNLAVAYIRMSTEHQE--FSPDIQRRF-IQKYAKEQGLILTREYLDEGRSGLSAEKRPQF 60
K AY R+ST+ +E S + Q+ + QK + L + D+G SG S +KR F
Sbjct: 28 KQRVAAYCRVSTDSEEQLNSYEAQKAYYTQKIEENPDWELAGIFADKGLSGTSMKKRDDF 87
Query: 61 LSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDI 120
+I + G D IL +SR+ R N + ++ GI V + E
Sbjct: 88 KRMIAACKRGRID--TILTKSLSRFAR--NTVDCLDTIRMLRARGIGVIFEKENINTLTE 143
Query: 121 GSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLL---LSADGSP 177
S+ + A L E + G+ + Q G F ++LL ADG P
Sbjct: 144 SSEFLITLFSGFAQAESESLSENIIRGKMMSM-----QAGHVPFQYKKLLGYRKGADGRP 198
Query: 178 KFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDR 237
+ + PE E K + +IY ++ + QI L A + T +
Sbjct: 199 EID-------------------PE-EAKTVRRIYRRYL-DGCSLAQIQHELEADHVPTAQ 237
Query: 238 N-TRWTKGVVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQ 294
RW+ V+H IL NE+Y+G V K+ T+ + +++ E VEN AIIP+
Sbjct: 238 AIQRWSYQVIHNILTNERYIGDAVLGKTYTTDCISKRVKKNTGERMQSYVENNHPAIIPK 297
Query: 295 PLFNAAQAIIHQRSIK 310
+F + + +R+ K
Sbjct: 298 EMFYRVREEMTRRASK 313
>gi|125974810|ref|YP_001038720.1| Recombinase [Clostridium thermocellum ATCC 27405]
gi|125715035|gb|ABN53527.1| Recombinase [Clostridium thermocellum ATCC 27405]
Length = 697
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 64/262 (24%), Positives = 112/262 (42%), Gaps = 11/262 (4%)
Query: 10 YIRMSTEHQ----EFSPDIQRRFIQKYAKEQGLILTR--EYLDEGRSGLSAEKRPQFLSL 63
Y R+S+E Q +S ++Q+ + K QG + D+G SG++ E+R + L
Sbjct: 7 YTRVSSEKQAAEDRYSLEVQKERCEALLKSQGYSEKDFIYFCDKGISGITIEQRDELKEL 66
Query: 64 INFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKG--NDIG 121
+ +Q + I YD+SR R +I + +I + +++ C F G N
Sbjct: 67 LKLLQEPGSQIEGICCYDLSRISR--SISHTLEIFKILKENNLRLFTCDGAFMGDINGQN 124
Query: 122 SQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFEL 181
++I ++ + +L E+V G + +E G GGPA G + S
Sbjct: 125 AKIMVSIYSMLNELFIDQLRERVKAGLEKSVEAGNYYGGPAPLGYKYEFYSVSQQENKNF 184
Query: 182 KTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRW 241
+ + + + L+ E E+ II I+H F + + +A LN T +N ++
Sbjct: 185 NSDKKTRKKDIKKRLVVD-ENEKPIIELIFHLFTVEKYSIKNVAQYLNLNGYRTRQNKQF 243
Query: 242 TKGVVHQILINEKYVGHNVWNK 263
V +IL N Y G W K
Sbjct: 244 ATATVQKILENPVYCGRLFWAK 265
>gi|85716806|ref|ZP_01047773.1| resolvase [Nitrobacter sp. Nb-311A]
gi|85696413|gb|EAQ34304.1| resolvase [Nitrobacter sp. Nb-311A]
Length = 603
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 77/315 (24%), Positives = 131/315 (41%), Gaps = 36/315 (11%)
Query: 7 AVAYIRMST----EHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLS 62
A Y+R+ST EH PD QR+ + Y +G L +++ G S + ++RP+F
Sbjct: 19 AALYLRVSTARQAEHDVSIPD-QRKQGETYCASRGYQLVDVFVEAGASA-TNDRRPEFQR 76
Query: 63 LINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGS 122
+I S A F ++V+ SR+ F + E Y + +K G+++ + G+D
Sbjct: 77 MIEAGTSKPAPFDVVVVHSFSRF--FRDHFELEFYVRRLAKNGVRLVSITQEM-GDDPMH 133
Query: 123 QIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELK 182
+ + + +E + V K +GF G G R + G+
Sbjct: 134 VMMRQIMALFDEYQSKENAKHVLRALKENARQGFWNGAQPPIGYRVVAAEQRGAKV---- 189
Query: 183 TGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTE-----RQIADSLNAQVILTDR 237
+K L+ D + I IY I + I + LN + I T
Sbjct: 190 ---KKKLEID--------PLHAETIRMIYRLAIQGEGDSGPMGVKAIVNYLNKRHIYTRH 238
Query: 238 NTRWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLF 297
RW G +++IL Y+G + +NK +K K P S+ V VE +I + F
Sbjct: 239 GGRWGIGQLYRILTRRTYIGEHEFNKRSKAKELK-----PASEVVTVE--VPPLIDRDTF 291
Query: 298 NAAQAIIHQRSIKLT 312
+ QA++ R+ K+T
Sbjct: 292 DKVQALLRHRNQKVT 306
>gi|154244234|ref|YP_001415192.1| Resolvase domain [Xanthobacter autotrophicus Py2]
gi|154158319|gb|ABS65535.1| Resolvase domain [Xanthobacter autotrophicus Py2]
Length = 551
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 70/272 (25%), Positives = 114/272 (41%), Gaps = 19/272 (6%)
Query: 1 MEYKNLAVAYIRMST----EHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEK 56
M A Y+R+ST EH PD Q+R + Y +G L Y++ G S + ++
Sbjct: 1 MTVPQRAALYLRVSTARQAEHDVSIPD-QKRQGEAYCASRGYQLVETYVEPGASA-TNDR 58
Query: 57 RPQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFK 116
RP+F +I S A F ++V+ SR+ F + E Y + +K G+K+ +
Sbjct: 59 RPEFQRMIEAGTSKPAPFDVVVVHSFSRF--FRDHFELEFYVRKLAKNGVKLVSITQEM- 115
Query: 117 GNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGS 176
G+D + + + +E + V K +GF G G R +++A+
Sbjct: 116 GDDPMHVMMRQIMALFDEYQSKENAKHVIRALKENARQGFWNGSLPPIGYR--VVAAEQR 173
Query: 177 PKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTD 236
K + L ++ V LI L ++ D + + I LN I T
Sbjct: 174 GAKTKKKLEIDPLHAETVRLIYR--------LALHGDGDHGQMGVKNIVSHLNRNRIFTR 225
Query: 237 RNTRWTKGVVHQILINEKYVGHNVWNKSCTSK 268
RW G VH+IL Y+G + +NK SK
Sbjct: 226 DGGRWGIGQVHRILTRRTYMGEHEFNKRSKSK 257
>gi|153810526|ref|ZP_01963194.1| hypothetical protein RUMOBE_00907 [Ruminococcus obeum ATCC 29174]
gi|149833705|gb|EDM88786.1| hypothetical protein RUMOBE_00907 [Ruminococcus obeum ATCC 29174]
Length = 523
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 78/326 (23%), Positives = 135/326 (41%), Gaps = 28/326 (8%)
Query: 1 MEYKNLAVAYIRMSTEHQEFSPDI--------QRRFIQKYAKEQGLILTREYLDEGRSGL 52
M K+ Y R+S E + + Q+ + +Y EQG + Y D+ +G
Sbjct: 2 MNTKSKVAIYCRLSEEDRNKQHETDDSNSIQNQKSMLIQYVLEQGWEVYNIYSDDDYTG- 60
Query: 53 SAEKRPQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIK----V 108
S +RP+F L+N + + F IL SR+ R L + E + + GI+ V
Sbjct: 61 SDRRRPEFNKLLN--DAEHRKFDIILCKTQSRFTRELELVEK-YIHGLFPMWGIRFISIV 117
Query: 109 HYCAEPFKGNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRR 168
KGN QI V W Y ++ E + + + + GF G A +G ++
Sbjct: 118 DNADTANKGNKKSRQINGLVNEW----YLEDMSENIRSVLTDRRKNGFHIGAFALYGYKK 173
Query: 169 LLLSADGSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSL 228
D K L + + V + + + I ++ +D + TE + L
Sbjct: 174 -----DPEQKGHLIIDEEAAAVVREVFTLFSQGYGKTAIARMLNDRGIPNPTEYKRLHGL 228
Query: 229 NAQVILTDRNTRWTKGVVHQILINEKYVGHNVWNK--SCTSKTGKLRGKNPESQWVRVEN 286
+ +T W + +L NE Y+G+ V K S + KT K P+ +W RVE
Sbjct: 229 RYKQPTRKNSTLWKYFAISDMLTNEIYIGNMVQGKYGSVSYKT-KQNKPRPKEEWYRVEG 287
Query: 287 AFEAIIPQPLFNAAQAIIHQRSIKLT 312
E II + L++ Q+++ +++ T
Sbjct: 288 THEPIIDRELWDKVQSMVAEKAKPFT 313
>gi|69933856|ref|ZP_00628992.1| Resolvase, N-terminal:Recombinase [Paracoccus denitrificans PD1222]
gi|119385845|ref|YP_916900.1| Recombinase [Paracoccus denitrificans PD1222]
gi|119376440|gb|ABL71204.1| Recombinase [Paracoccus denitrificans PD1222]
Length = 552
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 82/305 (26%), Positives = 134/305 (43%), Gaps = 37/305 (12%)
Query: 10 YIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R S++ Q + S Q R + A+++G + EY D SG S +RP +L+ +
Sbjct: 6 YARYSSDQQRDASITDQFRMCRLRAEKEGWRVVEEYSDHSISGASMIQRPGIQALV--MD 63
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
S F +L + R R + ++ A + +K+ +E +I S++ +
Sbjct: 64 STRGRFDLVLAEALDRISR--DQEDIAGIYKRMRYADVKMFTLSE----GEI-SELHVGL 116
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRKS 188
K + ++L +K GQ+ +E G + GG +G D KF+ GD +
Sbjct: 117 KGTMNALFLKDLADKTRRGQRGRVEAG-KSGGGNSYGY-------DVVKKFD---GDGEP 165
Query: 189 LQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVV-- 246
+ DR I A E ++ +I+ D+ K+ + IA +LN I W +
Sbjct: 166 SRGDRTINAAQAE----VVRRIFRDYA-AGKSAKAIAMALNKDGIPAPSGGDWGFSTING 220
Query: 247 -----HQILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEAIIPQPLF 297
+ IL NE YVG VWN+ K TGK + + NPE WV E I+ L+
Sbjct: 221 NPKRGNGILNNEMYVGRIVWNRQRFIKDPDTGKRQARPNPEEDWVIQEVPELRILDDDLW 280
Query: 298 NAAQA 302
NA +A
Sbjct: 281 NAVKA 285
>gi|148556286|ref|YP_001263868.1| Resolvase, N-terminal domain [Sphingomonas wittichii RW1]
gi|148501476|gb|ABQ69730.1| Resolvase, N-terminal domain [Sphingomonas wittichii RW1]
Length = 590
Score = 60.1 bits (144), Expect = 3e-07, Method: Composition-based stats.
Identities = 77/310 (24%), Positives = 132/310 (42%), Gaps = 26/310 (8%)
Query: 7 AVAYIRMST----EHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLS 62
A Y+R+ST EH PD Q+R + + +G L Y++ G S + ++RP+F
Sbjct: 7 AALYLRVSTARQAEHDVSIPD-QKRQGEAWCAARGYHLAETYVEAGASA-TNDRRPEFQR 64
Query: 63 LINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGS 122
+I + A F ++V+ SR+ F + E Y + +K G+K+ + G+D
Sbjct: 65 MIEAGTTKPAPFDVVVVHSFSRF--FRDHFELEFYVRKLAKNGVKLVSITQEM-GDDPMH 121
Query: 123 QIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELK 182
+ + + +E + V K +GF G G R +++A+ K
Sbjct: 122 VMMRQIMALFDEYQSKENAKHVMRALKENARQGFWNGALPPIGYR--IIAAEQRGAKVKK 179
Query: 183 TGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWT 242
+ L +D + LI L + D + I LNA+ I T RW
Sbjct: 180 KLEIDPLHADTIRLI--------FRLALEGDGSTGPMGVKAIVTHLNARRIFTRDGGRWG 231
Query: 243 KGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQA 302
G +H+IL Y+G + +NK +K K P+S+ V +I + F+ QA
Sbjct: 232 IGQLHRILTRRTYIGEHEFNKRTKAKELK-----PQSE--VVVVPVPPLIDRETFDTVQA 284
Query: 303 IIHQRSIKLT 312
+ R+ K+T
Sbjct: 285 RLKARNPKVT 294
>gi|154500553|ref|ZP_02038591.1| hypothetical protein BACCAP_04226 [Bacteroides capillosus ATCC
29799]
gi|150270442|gb|EDM97751.1| hypothetical protein BACCAP_04226 [Bacteroides capillosus ATCC
29799]
Length = 509
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 87/327 (26%), Positives = 132/327 (40%), Gaps = 58/327 (17%)
Query: 10 YIRMSTEHQEFSPDI------QRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSL 63
Y R+S E ++ D Q+ + YA ++G + + Y DE SG + RP F +
Sbjct: 10 YTRLSKEDEDRQGDASESIRNQKALLTAYAADRGWTVFQVYCDEDYSG-ADRLRPAFNRM 68
Query: 64 INFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAE----PFKGND 119
+ + G F +L SR+ R + + E + + GI+ A+ +GN
Sbjct: 69 LRDAEEGR--FHILLCKSQSRFTRDMELVEK-YIHGLFPLWGIRFVAVADNADTQVRGNK 125
Query: 120 IGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKF 179
QI V W Y +L E + + +++ RQG G G+P +
Sbjct: 126 KARQINGLVNEW----YLEDLSENI----RTVLDMKRRQGQYIG-----------GAPIY 166
Query: 180 ELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVIL----- 234
G RK +DR L+ PE ++ QI+ + K +++IA LNA I
Sbjct: 167 ----GYRKD-PADRHHLLVDPE-AAGVVKQIFR-WSLEGKGKQEIARLLNAAGIPNPTRY 219
Query: 235 ------------TDRNTRWTKGVVHQILINEKYVGHNVWNK-SCTSKTGKLRGKNPESQW 281
+D W K V +IL NE Y G V + S K P QW
Sbjct: 220 KLEQGWPGVPPGSDGQGLWNKTTVWRILRNEMYTGVMVQGRRKKVSYKSKTLIDLPREQW 279
Query: 282 VRVENAFEAIIPQPLFNAAQAIIHQRS 308
RVE+ EAI+ LF A Q + RS
Sbjct: 280 FRVEHTHEAIVDATLFQAVQQGLALRS 306
>gi|118727990|ref|ZP_01576570.1| Recombinase [Clostridium cellulolyticum H10]
gi|118662635|gb|EAV69316.1| Recombinase [Clostridium cellulolyticum H10]
Length = 482
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 78/307 (25%), Positives = 138/307 (44%), Gaps = 44/307 (14%)
Query: 8 VAYIRMS-TEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSG--LSAEKRPQFLSLI 64
V Y R S T+ E S + Q R ++YA + I+ + Y DE SG + R Q+ +L+
Sbjct: 7 VIYARYSSTKQDEISIEAQVRACKEYAANRDYIVLKVYTDEAISGKGTKTQSRKQYQALL 66
Query: 65 NFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQI 124
+ G+ D +LV+ R R N+ E + E S+ I + ++ F G ++I
Sbjct: 67 RDSKQGSFDV--VLVHRYDRIAR--NVGEHVNLELKLSENNISLVAVSQDF-GQSKEAKI 121
Query: 125 FKAVKRWSAGEYCRE-LGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKT 183
K + W+ EY E L ++ G + + +G GG FG
Sbjct: 122 MKTMM-WALSEYYIENLADETKKGHREVALKGLHNGGCPPFGY----------------- 163
Query: 184 GDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNT--RW 241
+++ + I+ E E + +I+ + + + ++I +N ++ R R+
Sbjct: 164 ----DIKNQQYII---NEKEAYFVKKIF-NCALKKEGFKEIVSEINKSGMVGKRGKPIRY 215
Query: 242 TKGVVHQILINEKYVGHNVWNKSCTSKTGK-LRGKNPESQWVRVENAFEAIIPQPLFNAA 300
T+ V++IL NEKY G V+ S ++ + LR P + +R+E A II + LF
Sbjct: 216 TQ--VYEILRNEKYTG--VYKYSLNEESNRSLRRAKPNA--IRIEGALPQIINKALFLEV 269
Query: 301 QAIIHQR 307
Q I+ +R
Sbjct: 270 QKIMDER 276
>gi|83943296|ref|ZP_00955755.1| resolvase [Sulfitobacter sp. EE-36]
gi|83845528|gb|EAP83406.1| resolvase [Sulfitobacter sp. EE-36]
Length = 547
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 93/359 (25%), Positives = 159/359 (44%), Gaps = 54/359 (15%)
Query: 1 MEYKNLAVAYIRMSTEHQE-FSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQ 59
M K Y R S++ Q S D Q +KYA+ G + +EY D G SG + RP
Sbjct: 1 MTVKPRVAIYARYSSDMQNPKSVDDQFSECRKYAERNGYEVVKEYADAGMSG-ALRDRPG 59
Query: 60 FLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKG-N 118
F +L++ V + + D +L + R GR +++ ++++ + + I++H + G
Sbjct: 60 FQALLDAVHARSFDI--VLFEHVDRLGR--DLERASNFYKAATFADIELHQLGKGKLGLL 115
Query: 119 DIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPA-GFGLRRLLLSADGSP 177
DIG + A + +L K G + ERG GG + G+ R + DG
Sbjct: 116 DIG------IMSTMAQIFLEDLALKTRRGLRGKFERGQSAGGKSYGYAPR---IGQDGL- 165
Query: 178 KFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDF---IYRHKTERQI-ADSLNAQVI 233
++TG ++ + E I+ +I+ ++ + K Q+ AD + +
Sbjct: 166 ---VQTGH-----------VSIDDNEATIVRRIFTEYASGVSPLKIAAQLNADGVPSPAA 211
Query: 234 LTDR--NTRWTKGVVH-------QILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQ 280
T R N W + ++ IL NE Y+G +WN+ SK TGK + NP
Sbjct: 212 NTKRATNGHWKQNTINGNPTRGTGILNNELYIGRRIWNRLRYSKHPETGKRVSRLNPSED 271
Query: 281 WVRVENAFEAIIPQPLFNAAQAI-IHQRSIK----LTDEEMLDKLRTLLKVKGKLSGLI 334
W + II Q L++A +A+ QR ++ TD+ L ++ + K LSGL+
Sbjct: 272 WEVRDVPDLPIIDQDLWDAVKALQAGQRKVRSTKTATDKNGLSVGQSFRRRKYLLSGLM 330
>gi|148324400|gb|EDK89650.1| possible recombinase [Fusobacterium nucleatum subsp. polymorphum
ATCC 10953]
Length = 510
Score = 60.1 bits (144), Expect = 4e-07, Method: Composition-based stats.
Identities = 80/299 (26%), Positives = 122/299 (40%), Gaps = 40/299 (13%)
Query: 7 AVAYIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
AVAY R S+ +Q E S D Q R I++Y + L R Y DE SG S + R FL +I
Sbjct: 4 AVAYCRFSSSNQREESIDAQIRAIKEYCNKNNFKLIRIYKDEAISGTSTKDREMFLEMI- 62
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
+ F ++V+ R+ R N + A YE+I + +K+ E + S I
Sbjct: 63 -LDCKKNLFDCVIVHKYDRFAR--NRYDHALYEKILNDNNVKLISVLEQLVDDSPESIIL 119
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGG--PAGFGLRRLLLSADGSPKFELKT 183
K+V Y + L +V G+K + GG P G+ L + + E
Sbjct: 120 KSVLTGMNEYYSKNLSREVKKGKKENALKAIHNGGIPPLGYDLDKNKKYIINKKEAE--- 176
Query: 184 GDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTK 243
K+I ++ D + IAD LN + R + K
Sbjct: 177 -------------------AVKLIFELALDGV----GYVSIADILNKKGYKNKRGKEFRK 213
Query: 244 GVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQA 302
+ L+N KY+G + GKL+ K P + +EN+ E II + +F QA
Sbjct: 214 ISIRDTLLNIKYIG--TYYYGLKDGHGKLQ-KEP----IIIENSHEPIIDKDIFYKVQA 265
>gi|145622588|ref|ZP_01778546.1| Recombinase [Petrotoga mobilis SJ95]
gi|144947113|gb|EDJ82147.1| Recombinase [Petrotoga mobilis SJ95]
Length = 522
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 85/305 (27%), Positives = 130/305 (42%), Gaps = 33/305 (10%)
Query: 9 AYIRMST--EHQEFSPDIQRRFIQKYAKEQ-GLILTREYLDEGRSGLSAEKRPQFLSLIN 65
AY R+ST E Q S + Q Y K L + DEG +G + +KR +F +I
Sbjct: 31 AYCRVSTDSEEQATSYEAQIEHYTNYIKSNPEWELAGIFADEGITGTNTKKREEFNRMIE 90
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
G D I+ ISR+ R N + Y + + I V++ E D +I
Sbjct: 91 ECMQGKIDM--IITKSISRFAR--NTLDCLKYIRQLKEKNIPVYFEKENINTLDSKGEIL 146
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
+ A + + L + V G I+ ++QG R L + D K G+
Sbjct: 147 LTIMASLAQQESQSLSQNVKLG----IQYRYQQGKIHINHNRFLGYTKD-------KDGN 195
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDR-NTRWTKG 244
L+ PE E +I+ +IY +++ + QIA L A ILT N RW
Sbjct: 196 ----------LVIVPE-EAEIVKRIYREYL-EGSSMLQIARGLEADGILTGAGNPRWHTS 243
Query: 245 VVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQA 302
+++IL NEKY+G + K+ T + K N VEN+ E IIP+ +F Q
Sbjct: 244 TINKILRNEKYIGDALLQKTYTVDFLSKKRVANNGIVPQYYVENSHEPIIPREIFMQVQE 303
Query: 303 IIHQR 307
+ +R
Sbjct: 304 QLVKR 308
>gi|114766046|ref|ZP_01445056.1| resolvase [Roseovarius sp. HTCC2601]
gi|114541681|gb|EAU44721.1| resolvase [Roseovarius sp. HTCC2601]
Length = 566
Score = 59.7 bits (143), Expect = 5e-07, Method: Composition-based stats.
Identities = 90/349 (25%), Positives = 147/349 (42%), Gaps = 51/349 (14%)
Query: 10 YIRMSTEHQE-FSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R ST+ Q S + Q R +YA ++G + + D SG S+ RP F L +
Sbjct: 16 YARYSTDMQNPMSIEDQFRQATRYANQRGWAIVERFSDSAISGTSSRTRPDFARLSEALH 75
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
NA F +L + R R + + A + + +++H G + +
Sbjct: 76 D-NA-FDIVLTESLDRLSR--DQEHLAGFYKAARYANVEIHTI-----GRGKVDAMTLGL 126
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRKS 188
+ + +L +KV G + + G R GG +G R A G+P D+ +
Sbjct: 127 SSMMSAMFLEDLSDKVRRGIEGKVMSG-RSGGGRIYGYRPGT-DARGAP-------DKGA 177
Query: 189 LQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLN-----AQVILTDRNT--RW 241
L D + E ++ +I+ D+ + IA +LN + + T R + W
Sbjct: 178 LAID--------DLEAAVVRRIFRDYA-AGMSPIAIASALNDDGIPSPSVGTKRASSGHW 228
Query: 242 TKGVVHQ-------ILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEA 290
+ ++ IL NE Y+G +WN+ C K T K R NPES+W VE
Sbjct: 229 KQNTINGNRTRGTGILNNELYIGRRIWNRLCYRKDPLTEKKRSTLNPESEWQIVEVPQLR 288
Query: 291 IIPQPLFNAA---QAIIHQRSIKL--TDEEMLDKLRTLLKVKGKLSGLI 334
I+ Q L++A Q +R K+ TD L ++L + K LSGL+
Sbjct: 289 IVDQELWDAVKTRQESQAKRRSKMSSTDRNHLSVGQSLRRRKYLLSGLL 337
>gi|154498001|ref|ZP_02036379.1| hypothetical protein BACCAP_01981 [Bacteroides capillosus ATCC
29799]
gi|150272991|gb|EDN00148.1| hypothetical protein BACCAP_01981 [Bacteroides capillosus ATCC
29799]
Length = 519
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 81/316 (25%), Positives = 134/316 (42%), Gaps = 28/316 (8%)
Query: 7 AVAYIRMSTEHQEF--------SPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRP 58
A Y R+S E ++ S Q+ + +YA+EQG + R Y D+ +G S RP
Sbjct: 6 AAIYCRLSEEDRDKRLASDDSGSIQNQKAMLLQYAEEQGWEVYRIYSDDDYAG-SDRSRP 64
Query: 59 QFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIK----VHYCAEP 114
F L+ Q+G F+ IL SR+ R L + E + + GI+ V
Sbjct: 65 AFQQLLRDAQAGR--FNIILCKTQSRFTRELELVEK-YIHGLLPLWGIRFVSIVDNADTD 121
Query: 115 FKGNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSAD 174
+GN QI V W Y ++ E + + + + G G A +G ++ D
Sbjct: 122 NRGNKKSRQINGLVNEW----YLEDMSENIRSVLDSRRKNGLHIGAFALYGYQK-----D 172
Query: 175 GSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVIL 234
K L + ++ +V + + + I + + E + L +
Sbjct: 173 PEHKGHLLVDEEAAVTVRQVFSLFAQGYGKTAIARQLNSQGIPPPGEYKRLHGLAYRNPR 232
Query: 235 TDRNTRWTKGVVHQILINEKYVGHNVWNK--SCTSKTGKLRGKNPESQWVRVENAFEAII 292
+ T WT V +L NE Y+G+ V K S + K+ K R + P+S W E EAII
Sbjct: 233 ENVKTLWTYSAVSSMLRNEIYIGNMVQGKYGSVSYKSRKNRPR-PKSAWFVAEGTHEAII 291
Query: 293 PQPLFNAAQAIIHQRS 308
+ L++ QA++ +RS
Sbjct: 292 DRALWDRVQALLAERS 307
>gi|115523060|ref|YP_779971.1| Recombinase [Rhodopseudomonas palustris BisA53]
gi|115517007|gb|ABJ04991.1| Recombinase [Rhodopseudomonas palustris BisA53]
Length = 542
Score = 59.3 bits (142), Expect = 6e-07, Method: Composition-based stats.
Identities = 87/312 (27%), Positives = 127/312 (40%), Gaps = 47/312 (15%)
Query: 10 YIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R S++ Q + S D Q F ++ G+ + + D S SA+ RP F++L+
Sbjct: 7 YARFSSDLQNDKSVDDQIAFCREVCARNGMTVVLTFEDRAVSASSAKNRPGFIALMR--A 64
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
+ F ++ D+ R R +A E +GI +H ++I A+
Sbjct: 65 AAARLFDVVVAEDMDRIFRDQADYHAARKE--LDFLGITIHTATGKV------TKIDGAL 116
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPA-GFGLRRLLLSADGSPKFELKTGDRK 187
+ Y L V G + +I G GG A G+ + GSP EL D +
Sbjct: 117 RALMGEMYLENLALHVRRGLEGVIRDGRHAGGRAYGYSI------VPGSPG-ELVIDDAQ 169
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVV- 246
+ KI+ +I+ F+ T R IA LNA I R TRW +
Sbjct: 170 A----------------KIVQRIFARFV-AGVTPRAIAAELNADRIAAPRGTRWNASTIN 212
Query: 247 ------HQILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEAIIPQPL 296
H +L+NE Y G VWNK K TGK + N + Q E II
Sbjct: 213 GNNARGHGMLLNELYAGRIVWNKVRMVKDPTTGKRISRINAKDQRRITEAPQLRIIDDVT 272
Query: 297 FNAAQAIIHQRS 308
+NAAQAI +RS
Sbjct: 273 WNAAQAIKLKRS 284
>gi|126460570|ref|YP_001056848.1| Resolvase, N-terminal domain [Pyrobaculum calidifontis JCM 11548]
gi|126250291|gb|ABO09382.1| Resolvase, N-terminal domain [Pyrobaculum calidifontis JCM 11548]
Length = 252
Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 35/82 (42%), Positives = 52/82 (63%), Gaps = 3/82 (3%)
Query: 7 AVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAE-KRPQFLSLIN 65
AV YIR+STE Q+ P+ QR +++K+A E GL + + Y+D G SG SA +RP F L++
Sbjct: 4 AVTYIRVSTEEQD--PENQRLYLEKWASEHGLAIVKHYVDVGVSGASAPWERPAFQRLMS 61
Query: 66 FVQSGNADFSHILVYDISRWGR 87
V++ +LVY+ SR R
Sbjct: 62 EVEALEPKPRVLLVYETSRLVR 83
>gi|114844657|ref|ZP_01455099.1| Recombinase [Thermoanaerobacter ethanolicus X514]
gi|114805344|gb|EAU57143.1| Recombinase [Thermoanaerobacter ethanolicus X514]
Length = 523
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 85/310 (27%), Positives = 136/310 (43%), Gaps = 41/310 (13%)
Query: 9 AYIRMSTE--HQEFSPDIQ----RRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLS 62
AY R+ST+ Q S ++Q FI+K ++ + + D+G SG + + R +F
Sbjct: 32 AYCRVSTDSDEQASSYEVQIEHYTEFIKKNSEWE---FAGIFADDGISGTNTKNRDEFNR 88
Query: 63 LINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGS 122
+I+ +G D I+ ISR+ R N + HY + I V++ E D
Sbjct: 89 MIDECMAGKIDM--IITKSISRFAR--NTLDCLHYIRKLKDKNIAVYFEKENINTLDAKG 144
Query: 123 QIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFR-QGGPAGFGLRRLLLSADGSPKFEL 181
+I + A + + L + V G + +R Q G R L G K E
Sbjct: 145 EIMLTIMASLAQQESQSLSQNVKLGYQ------YRYQQGEVMVNCSRFL----GYTKDEN 194
Query: 182 KTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDR-NTR 240
K R++++ PE E +I+ +IY +++ ++ I L A ILT R
Sbjct: 195 K----------RLVIV--PE-EAEIVKRIYREYLEGSSMDK-IKKGLEADGILTGAGKKR 240
Query: 241 WTKGVVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQPLFN 298
W + +IL NEKY+G + K+ T T K N VEN+ EAIIP+ +F
Sbjct: 241 WHTSTIRKILSNEKYIGDALLQKTYTVDFLTKKRVVNNGIVPQYYVENSHEAIIPREIFM 300
Query: 299 AAQAIIHQRS 308
Q + +RS
Sbjct: 301 QVQEELVRRS 310
>gi|113936240|ref|ZP_01422135.1| Resolvase-like:Recombinase [Caulobacter sp. K31]
gi|113729577|gb|EAU10652.1| Resolvase-like:Recombinase [Caulobacter sp. K31]
Length = 579
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 76/311 (24%), Positives = 130/311 (41%), Gaps = 35/311 (11%)
Query: 7 AVAYIRMST----EHQEFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLS 62
A Y+R+ST EH PD QRR + Y +G + EYL+ G + + +KRP F
Sbjct: 16 AAVYLRVSTGRQAEHDLSLPD-QRRQLDAYCAGKGWKVATEYLEPGNTA-TDDKRPAFQD 73
Query: 63 LINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGS 122
+I + A F ILV+ SR+ F + + Y + +K G+KV + G+D S
Sbjct: 74 MIEAAMTKPAPFDVILVHSFSRF--FRDQFQFEFYVRKLAKNGVKVVSITQEL-GDDPMS 130
Query: 123 QIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELK 182
+ + + +E G+ K +GF G G R ++ G+ +LK
Sbjct: 131 HMMRKIMTLFDEYQSKENGKHTLRAMKENARQGFWNGSRPPLGYRVIIAEQRGA---KLK 187
Query: 183 TGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTE-----RQIADSLNAQVILTDR 237
K L+ D + + + + +IY ++ + IA LN + T
Sbjct: 188 ----KKLEIDPI--------QAEKVRRIYKLALFGVDGSGPLGLKSIATYLNDNNVRTKD 235
Query: 238 NTRWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVRVENAFEAIIPQPLF 297
R+ VH++L Y G + +N + K R + P+ + + AI+ + +
Sbjct: 236 GGRFGIDAVHKVLTRTTYKGEHRFNFT----DHKNRARKPDEEHAVAK--IPAIVTEDEW 289
Query: 298 NAAQAIIHQRS 308
A Q + RS
Sbjct: 290 QAVQDHLKLRS 300
>gi|153812493|ref|ZP_01965161.1| hypothetical protein RUMOBE_02892 [Ruminococcus obeum ATCC 29174]
gi|149831418|gb|EDM86506.1| hypothetical protein RUMOBE_02892 [Ruminococcus obeum ATCC 29174]
Length = 542
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 77/327 (23%), Positives = 143/327 (43%), Gaps = 53/327 (16%)
Query: 5 NLAVAYIRMSTEH--QEFSPDI--QRRFIQKYA-KEQGLILTREYLDEGRSGLSAEKRPQ 59
N+A+ YIR+S E +E S + QR+ + +Y K IL Y+D+G +G + RP
Sbjct: 11 NVAI-YIRLSREDGDKEESDSVGNQRKLLTEYVNKHDDFILYDVYIDDGFTGTNF-NRPD 68
Query: 60 FLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGND 119
F +I ++ + ++V D+SR+GR ID + E+I ++ ++ +
Sbjct: 69 FHRMIADIEDNKVNC--VVVKDLSRFGRDY-IDTGRYLERIFPELNVRFISVTDNIDSMK 125
Query: 120 IGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKF 179
+ +K +Y R++ K+ K+ + G G +G ++ SP
Sbjct: 126 QAYDMLLPIKNIFNEQYARDISNKIQATVKSKQKAGEFIGAFTSYGYKK-------SP-- 176
Query: 180 ELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQ-IADSLNAQVILT--- 235
++ L D E+ +++ +++ +Y +Q IA LNA+ IL
Sbjct: 177 ----ANKNKLVID--------EYASEVVKRVFT--MYAQGIGKQSIAKILNAEGILCPSE 222
Query: 236 ---------------DRNTRWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQ 280
++ + WT + +L NE Y+G+ V K K R E+
Sbjct: 223 YKKLNGENYKNCNRLEKTSYWTYSTIKVMLQNELYIGNMVQGKKHQRMRSKQRPVEKEN- 281
Query: 281 WVRVENAFEAIIPQPLFNAAQAIIHQR 307
W+RVEN E II + L++ Q ++ ++
Sbjct: 282 WIRVENTHEPIIDRQLWDKVQKLLTKK 308
>gi|154248492|ref|YP_001419450.1| Resolvase domain [Xanthobacter autotrophicus Py2]
gi|154162577|gb|ABS69793.1| Resolvase domain [Xanthobacter autotrophicus Py2]
Length = 584
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 87/340 (25%), Positives = 150/340 (44%), Gaps = 45/340 (13%)
Query: 10 YIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R S+++Q + S Q R + +A++QG + EY D SG S RP +LI+
Sbjct: 6 YARYSSDNQRDASIADQLRICRLHAEKQGWQVVEEYTDHAISGASL-LRPGIQALISDAA 64
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
G F ++L + R R + ++ A + + +K+ +E ++ + + +
Sbjct: 65 RGR--FQYVLAEAMDRLSR--DQEDIAGLYKRMAYADVKIVTLSE----GEV-THLHVGL 115
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPA-GFGLRRLLLSADGSPKFELKTGDRK 187
K + ++L +K GQ+ +E G GG A G+ + + A G P
Sbjct: 116 KGTMNALFLKDLADKTRRGQRGRVEMGKSGGGNAYGYDVVKKF-DAGGEP---------- 164
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVH 247
++ DR I EF+ +I +I+ D+ K+ ++IA LN + I W ++
Sbjct: 165 -IRGDRTI----NEFQAGVIRRIFRDY-SAGKSAKRIAFELNKEGISAPGGGEWGFSTIN 218
Query: 248 Q-------ILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEAIIPQPL 296
IL NE YVG VWN+ K TGK + + NPE W+ + I+ L
Sbjct: 219 GNPKRGNGILNNEMYVGKLVWNRQRFIKDPDTGKRQARINPEEDWITQDVPELRILDDEL 278
Query: 297 FNAAQAIIHQRSIKLT---DEEMLDKLRTLLKVKGKLSGL 333
+ A + Q+++KL + E + R + K SGL
Sbjct: 279 WRAVKD--RQKAVKLNRSDNGETENHFRERRRPKYLFSGL 316
>gi|154483931|ref|ZP_02026379.1| hypothetical protein EUBVEN_01638 [Eubacterium ventriosum ATCC
27560]
gi|149734973|gb|EDM50859.1| hypothetical protein EUBVEN_01638 [Eubacterium ventriosum ATCC
27560]
Length = 548
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 82/319 (25%), Positives = 135/319 (42%), Gaps = 33/319 (10%)
Query: 9 AYIRMST--EHQEFSPDIQRRFIQ-KYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
AY+R+ST E Q S Q+++ Q K ++ + IL Y DEG +G +KR FL +IN
Sbjct: 33 AYVRVSTDDEEQLNSFTSQKQYYQEKISQSKEWILVGIYADEGITGTKTKKRDDFLRMIN 92
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
+G D IL ISR+ R N+ ++ Y ++ G+ V + E + + S++
Sbjct: 93 DCMNGKIDI--ILTKSISRFSR--NLVDTIQYVRMLKSKGVTVIFEKENINTSTMESEMQ 148
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
A+ A L V G K + RG L+ +G ++
Sbjct: 149 LALLSTLAQNEVESLSANVKMGVKMKMRRG-------------ELMGFNGCLGYDYH--- 192
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNT-RWTKG 244
+ D+ I + E E +++ D IA L Q L + +WT
Sbjct: 193 ----KEDKSITVNEEEAET---VRLIFDLYLSGMGGISIAKELKRQCRLNKKGVCKWTDS 245
Query: 245 VVHQILINEKYVGHNVWNKSCT-SKTGKLRGKNP-ESQWVRVENAFEAIIPQPLFNAAQA 302
V I+ NEKY G + K+ T K R +N E +EN E I+ + +++ AQ
Sbjct: 246 GVIGIIKNEKYKGDLLLGKTYTVDPISKRRLENRGEEDKFYIENHHEPIVSREVWDRAQE 305
Query: 303 IIHQRSIKLTDEEMLDKLR 321
I R + + + ++R
Sbjct: 306 IRKGRYRSAVNNDPVIRIR 324
>gi|76787538|ref|YP_329391.1| prophage LambdaSa04, site-specific recombinase, resolvase family
[Streptococcus agalactiae A909]
gi|76562595|gb|ABA45179.1| prophage LambdaSa04, site-specific recombinase, resolvase family
[Streptococcus agalactiae A909]
Length = 448
Score = 58.2 bits (139), Expect = 1e-06, Method: Composition-based stats.
Identities = 79/308 (25%), Positives = 124/308 (40%), Gaps = 39/308 (12%)
Query: 9 AYIRMSTEHQE--FSPDIQRRFIQKYA-KEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
AY R+ST+ E S + Q + + Y K + L Y DEG S + +KR F LI
Sbjct: 17 AYCRVSTDQDEQLSSYENQVSYYRDYILKHEDYELVDIYADEGISATNTKKREAFNRLIQ 76
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
++G D ILV ISR+ R N + Y + ++GI V + E D ++
Sbjct: 77 DCRAGKVD--RILVKSISRFAR--NTLDCIKYVRELKELGIGVTFEKENIDSLDSKGEVL 132
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
+ A + R + E G + ERG E++
Sbjct: 133 LTILSSLAQDESRSISENATWGIRKKFERG------------------------EVRVNT 168
Query: 186 RKSLQSDRV---ILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILT-DRNTRW 241
K + D+ L+ PE + +++ IYH F+ + E IA LN I W
Sbjct: 169 TKFMGYDKDENGKLVINPE-QAEVVKHIYHQFLKGYSPE-SIAKELNTNGIKGWSGKANW 226
Query: 242 TKGVVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQPLFNA 299
+ ++L NEKY G + K+ T T K + + V N EAII +++
Sbjct: 227 YPSSILKMLQNEKYKGDALLQKTYTVDFLTKKRTENDGQVNQYYVTNNHEAIIDTEMWDT 286
Query: 300 AQAIIHQR 307
Q + +R
Sbjct: 287 VQEELARR 294
>gi|92119298|ref|YP_579027.1| Recombinase [Nitrobacter hamburgensis X14]
gi|91802192|gb|ABE64567.1| Recombinase [Nitrobacter hamburgensis X14]
Length = 537
Score = 57.8 bits (138), Expect = 2e-06, Method: Composition-based stats.
Identities = 77/299 (25%), Positives = 123/299 (41%), Gaps = 46/299 (15%)
Query: 7 AVAYIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
A Y R S++ Q + S + Q + + +GLI+ Y D SG S R + L+
Sbjct: 3 AAIYARFSSDKQTDRSIEDQVALCRAICEREGLIVVAVYDDRAISGASTLNRLGWQRLMR 62
Query: 66 FVQSGNADFSHILVYD-ISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQI 124
++G D +LV + + R R + ++ A + GI++ + G+ I
Sbjct: 63 DAKAGKFD---VLVAEALDRISR--DQEDLAGIHKRLRFAGIEIRTAQDGIAGD-----I 112
Query: 125 FKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTG 184
VK Y ++L +K GQ +I G R G +G R + G
Sbjct: 113 HIGVKGLLGSLYLKDLAQKTRRGQAGVIRDG-RHNGGRSYGYRPI-------------PG 158
Query: 185 DRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKG 244
R L+ D E E + QI+ D++ ++ R IA +LN + + R W
Sbjct: 159 KRGELEID--------EAEAATVRQIFADYL-DARSPRDIAAALNKKGVPGPRGGVWNAS 209
Query: 245 VV-------HQILINEKYVGHNVWNKSCTSK---TGK-LRGKNPESQWVRVENAFEAII 292
+ + IL NE YVG VWN+ K TGK + +NP QW+ + II
Sbjct: 210 TIAGSRKRLNGILQNELYVGRIVWNRQTFIKDPETGKRISRENPREQWMSADAEHLRII 268
>gi|119880098|ref|ZP_01646457.1| Recombinase [Salinispora arenicola CNS205]
gi|119827099|gb|EAX29648.1| Recombinase [Salinispora arenicola CNS205]
Length = 656
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 55/195 (28%), Positives = 75/195 (38%), Gaps = 10/195 (5%)
Query: 124 IFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKT 183
+ + K+ A Y E+ EK ++G + +G+ G P L + + E K
Sbjct: 160 LLRRTKQGVAEWYMIEMLEKSWDGFEEHTTQGWNVGKPPYGYLAEKHKHPVPAKRAEGKH 219
Query: 184 GDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLN----AQVILTDRNT 239
+ + DR GP EQ +I YR ER D V T
Sbjct: 220 KTKLKIDPDR-----GPVVEQIYAWRIDEKLSYRAIAERLNTDPDRYPPPQPVDPTRAVG 274
Query: 240 RWTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQW-VRVENAFEAIIPQPLFN 298
RWT V +IL+N KY GH VWN+ T NP QW V + I+P F
Sbjct: 275 RWTGSAVREILVNPKYTGHMVWNRRSTKDKLHPGKVNPREQWVVSTQPTHPGIVPIETFL 334
Query: 299 AAQAIIHQRSIKLTD 313
AAQ + R D
Sbjct: 335 AAQNVSRSRERSRAD 349
>gi|154497872|ref|ZP_02036250.1| hypothetical protein BACCAP_01850 [Bacteroides capillosus ATCC
29799]
gi|150273370|gb|EDN00515.1| hypothetical protein BACCAP_01850 [Bacteroides capillosus ATCC
29799]
Length = 518
Score = 57.4 bits (137), Expect = 2e-06, Method: Composition-based stats.
Identities = 71/305 (23%), Positives = 121/305 (39%), Gaps = 33/305 (10%)
Query: 9 AYIRMSTEHQE----FSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLI 64
AY R+S++ + ++ I R + G L Y DEG +G +KR L+
Sbjct: 22 AYCRVSSDSSDQLHSYAAQI-RYYTDMIQNHDGWELVDVYADEGITGTRMDKREDLNRLL 80
Query: 65 NFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQI 124
+ + G D +LV ISR+ R N + + S++G+ V + E + +++
Sbjct: 81 SDCRKGKID--KVLVKSISRFAR--NTRDCLASLRELSRLGVSVQFEKENIDTGTLTTEL 136
Query: 125 FKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTG 184
+V A + + + + +ERG A FG R L G
Sbjct: 137 MVSVSGSLAQQESVSISQNQRMSYQRRMERGEFITCKAPFGYR-------------LIDG 183
Query: 185 DRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKG 244
R + SD E K++ +++ ++ H E V TD W
Sbjct: 184 KRLEVISD----------EAKLVRWMFNAYLSGHSLEWIAEQMTKTGVSTTDGKPYWQCT 233
Query: 245 VVHQILINEKYVGHNVWNKSCTSK-TGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAI 303
V L NEKY+G ++ K+ T+ R + E+ +EN AII + F Q +
Sbjct: 234 TVLYTLTNEKYMGDSLCQKTFTTAFPFTQRQNHGEADQYYIENTHPAIITKGTFEKVQEL 293
Query: 304 IHQRS 308
+ Q+S
Sbjct: 294 LRQKS 298
>gi|551136|gb|AAB51419.1| TnpX [Clostridium perfringens]
Length = 707
Score = 57.4 bits (137), Expect = 3e-06, Method: Composition-based stats.
Identities = 72/300 (24%), Positives = 125/300 (41%), Gaps = 53/300 (17%)
Query: 25 QRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQSGNADFSHILVYDISR 84
Q+++++ YA+ G R + D+G SG++ RP F SLI V++GN + ++V D+SR
Sbjct: 30 QKKYLEDYARRNGFENIRHFTDDGFSGVNF-NRPGFQSLIKEVEAGNVE--TLIVKDMSR 86
Query: 85 WGR-FLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAVKRWSAGEYCRELGEK 143
GR +L + + E + + ++ N+ F Y ++ K
Sbjct: 87 LGRNYLQV--GFYTEVLFPQKNVRFLAINNSIDSNNASDNDFAPFLNIMNEWYAKDTSNK 144
Query: 144 VFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRKSLQSDRVILIAGPEFE 203
+ ++ G R G +G R L SD+ L+ P
Sbjct: 145 IKAIFDARMKDGKRCSGSIPYGYNR--------------------LPSDKQTLVVDPVAS 184
Query: 204 Q--KIILQIYHDFIYRHKTERQIADSLNAQVILT---------------DRNTR---WTK 243
+ K I + +D K+ R IA+ L + +LT ++ T W
Sbjct: 185 EVVKRIFTLAND----GKSTRAIAEILTEEKVLTPAAYAKEYHPEQYNGNKFTNPYLWAM 240
Query: 244 GVVHQILINEKYVGHNVWNKSCTS--KTGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQ 301
+ IL ++Y+GH V KS ++ K K + + E Q+V N E II Q L+++ Q
Sbjct: 241 STIRNILGRQEYLGHTVLRKSVSTNFKLHKRKSTDEEEQYV-FPNTHEPIISQELWDSVQ 299
>gi|42779500|ref|NP_976747.1| DNA recombinase, putative [Bacillus cereus ATCC 10987]
gi|42735416|gb|AAS39355.1| DNA recombinase, putative [Bacillus cereus ATCC 10987]
Length = 523
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 87/309 (28%), Positives = 133/309 (43%), Gaps = 39/309 (12%)
Query: 9 AYIRMST--EHQEFSPDIQRRFIQKYAKE-QGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
AY R+ST E Q S DIQ Y K+ + L + D+G +G + +KR +F +I
Sbjct: 32 AYCRVSTDSEEQASSYDIQIEHYTNYIKKNKEWELAGIFADDGITGTNTKKRDEFNRMIE 91
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
+GN D I+ ISR+ R N + Y + I V + E D +I
Sbjct: 92 ECMAGNIDM--IITKSISRFAR--NTLDCLKYIRQLKDKNIAVFFEKENINTLDSKGEIM 147
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGD 185
+ A + + L + V G I+ ++Q G +R L G K E K
Sbjct: 148 LTIMASLAQQESQSLSQNVKLG----IQYRYQQ-GEVQVNHKRFL----GYTKDENKQ-- 196
Query: 186 RKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDR-NTRWTKG 244
L+ PE + ++ +IY +++ + QIA L A ILT +W
Sbjct: 197 ----------LVIDPEGAE-VVKRIYREYL-EGASLLQIARGLEADGILTAAGKAKWRPE 244
Query: 245 VVHQILINEKYVGHNVWNKSCT-----SKTGKLRGKNPESQWVRVENAFEAIIPQPLFNA 299
+ +IL NEKY+G + K+ T K K G P+ VEN+ E IIP+ LF
Sbjct: 245 TLKKILQNEKYIGDALLQKTYTVDFLSKKRVKNNGIVPQ---YYVENSHEPIIPRDLFMQ 301
Query: 300 AQAIIHQRS 308
Q + +R+
Sbjct: 302 VQEEMVRRA 310
>gi|86739623|ref|YP_480023.1| Recombinase [Frankia sp. CcI3]
gi|86566485|gb|ABD10294.1| Recombinase [Frankia sp. CcI3]
Length = 743
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 34/115 (29%), Positives = 64/115 (55%), Gaps = 11/115 (9%)
Query: 7 AVAYIRMSTEHQ---EFSPD-----IQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRP 58
A+AY R+S+ Q ++ P+ QR ++ A+E G++L EY+D G+SG + ++RP
Sbjct: 14 AIAYYRVSSSGQVNTDYDPEGISLPAQRVACKQRARELGVVLVDEYIDPGKSGKTIDQRP 73
Query: 59 QFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAE 113
F +I +++ + H+ VY +SR+ R N + A ++G+++H E
Sbjct: 74 AFQEMIARIKA-DRHIKHVFVYALSRFAR--NRYDDAIMMMTLERLGVQLHSATE 125
>gi|134269477|emb|CAL69885.1| TndX protein [Streptococcus pyogenes]
Length = 489
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 42/297 (14%)
Query: 25 QRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQSGNADFSHILVYDISR 84
QR +++YAKE + EY+D+G SG + RP + +++G + +LV D+SR
Sbjct: 34 QREMLKRYAKENKFYVYDEYIDDGFSG-TTFNRPALNRMFEDIEAGKVNV--VLVKDMSR 90
Query: 85 WGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQI--FKAVKRWSAGEYCRELGE 142
GR N + E++ + ++ + ++I FK+V Y R++ +
Sbjct: 91 LGRN-NALFMYYVEEVFPDLDVRFIAINDMVDTAQDDNEIMPFKSVLN---EYYARDISK 146
Query: 143 KVFNGQKNLIERGFRQGGPAGFGL-------RRLLLSADGSP----KFELKTGDRKSLQS 191
K+ + + G G A +G ++L++ + +P FEL + Q
Sbjct: 147 KIRSSIRTTALTGGFTGAFAPYGYLVDPENKKKLIVDPETAPIVKRIFELSQQGTSTHQI 206
Query: 192 DRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVHQILI 251
R++ G I YR K ++ I + TD W V IL
Sbjct: 207 ARILCKDG----------ILVPRAYRAK-KKGILEQSKGFTFPTD----WVGKNVKMILE 251
Query: 252 NEKYVGHNVWNKSCTSKTGKLRGKN----PESQWVRVENAFEAIIPQPLFNAAQAII 304
N+ Y+GH V +K S+T + K P+ W+ VEN EAII + F Q I
Sbjct: 252 NQVYLGHMVSHK---SQTKSFKNKKIVPVPKEDWIVVENTHEAIIDKETFEIVQKFI 305
>gi|126698093|ref|YP_001086990.1| conjugative transposon site-specific recombinase [Clostridium
difficile 630]
gi|7012695|gb|AAF35174.1| TndX [Clostridium difficile]
gi|115249530|emb|CAJ67346.1| conjugative transposon site-specific recombinase [Clostridium
difficile 630]
Length = 533
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 75/297 (25%), Positives = 126/297 (42%), Gaps = 42/297 (14%)
Query: 25 QRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQSGNADFSHILVYDISR 84
QR +++YAKE + EY+D+G SG + RP + +++G + +LV D+SR
Sbjct: 34 QREMLKRYAKENKFYVYDEYIDDGFSG-TTFNRPALNRMFEDIEAGKVNV--VLVKDMSR 90
Query: 85 WGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQI--FKAVKRWSAGEYCRELGE 142
GR N + E++ + ++ + ++I FK+V Y R++ +
Sbjct: 91 LGRN-NALFMYYVEEVFPDLDVRFIAINDMVDTAQDDNEIMPFKSVLN---EYYARDISK 146
Query: 143 KVFNGQKNLIERGFRQGGPAGFGL-------RRLLLSADGSP----KFELKTGDRKSLQS 191
K+ + + G G A +G ++L++ + +P FEL + Q
Sbjct: 147 KIRSSIRTTALTGGFTGAFAPYGYLVDPENKKKLIVDPETAPIVKRIFELSQQGTSTHQI 206
Query: 192 DRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVHQILI 251
R++ G I YR K ++ I + TD W V IL
Sbjct: 207 ARILCKDG----------ILVPRAYRAK-KKGILEQSKGFTFPTD----WVGKNVKMILE 251
Query: 252 NEKYVGHNVWNKSCTSKTGKLRGKN----PESQWVRVENAFEAIIPQPLFNAAQAII 304
N+ Y+GH V +K S+T + K P+ W+ VEN EAII + F Q I
Sbjct: 252 NQVYLGHMVSHK---SQTKSFKNKKIVPVPKEDWIVVENTHEAIIDKETFEIVQKFI 305
>gi|118739060|ref|ZP_01587136.1| Recombinase [Dinoroseobacter shibae DFL 12]
gi|118671663|gb|EAV78242.1| Recombinase [Dinoroseobacter shibae DFL 12]
Length = 558
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 92/345 (26%), Positives = 155/345 (44%), Gaps = 50/345 (14%)
Query: 7 AVAYIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
A Y R ST+ Q + S + Q R + G Y D G SG S RP + L+
Sbjct: 16 AAIYARYSTDLQSDSSIEDQHRLCARLITSNGWREAETYSDRGLSGAS-HLRPAYQRLLE 74
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKM---GIKVHYCAEPFKGNDIGS 122
+ GNA F ++ + R R + H +M GI V AE +I S
Sbjct: 75 DAR-GNA-FDIVVAEGLDRISR-----DQEHIAAFFKQMRFQGIPVFTVAE----GEI-S 122
Query: 123 QIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPA-GFGLRRLLLSADGSPKFEL 181
++ +K + + ++L +K G + + +G GG G+ + R + ADG+ L
Sbjct: 123 ELHIGLKGTMSSLFLKDLAQKTHRGLEGRVRKGKSAGGVTFGYDVLRQM-QADGT----L 177
Query: 182 KTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRW 241
TG+R ++ D+ ++ + IL+ Y + + + R IA +LNA+ + R T W
Sbjct: 178 ATGER-AINPDQAEVV-------RRILEDYKNGL----SPRAIASTLNAEGVPGPRGT-W 224
Query: 242 TKGVV---HQ----ILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEA 290
+ HQ IL NE Y+G VWN+ K TGK + + NP WV +
Sbjct: 225 GASTIYGNHQRGTGILNNELYIGRLVWNRQRFIKDPATGKRQARPNPPDAWVIEDVPHLR 284
Query: 291 IIPQPLFNAAQA-IIHQRSIKLTDEEMLDKLRTLLKVKGKLSGLI 334
I+ + L++A +A + R++ ++D + KL + + SG++
Sbjct: 285 IVDEDLWDAVKARQLQTRNMAISDG--IKKLGRARRARHLFSGML 327
>gi|154500164|ref|ZP_02038202.1| hypothetical protein BACCAP_03825 [Bacteroides capillosus ATCC
29799]
gi|150271120|gb|EDM98389.1| hypothetical protein BACCAP_03825 [Bacteroides capillosus ATCC
29799]
Length = 513
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 77/311 (24%), Positives = 129/311 (41%), Gaps = 39/311 (12%)
Query: 9 AYIRMSTEHQE--FSPDIQRRF-IQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLIN 65
AY R+ST+ +E S Q+ + QK + L + DEG +G S +KR +F +I
Sbjct: 3 AYCRVSTDSEEQINSYTAQKAYYTQKIEESPDWELAGIFADEGITGTSMKKRKEFNRMIT 62
Query: 66 FVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIF 125
+ G D IL +SR+ R N + ++ GI V + E S+
Sbjct: 63 ACKRGGIDL--ILTKSLSRFAR--NTVDCLETVRMLKARGIGVIFEKENINTLTESSEFL 118
Query: 126 KAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLL---LSADGSPKFELK 182
+ A L + G + ++ G F R +L ADG P+
Sbjct: 119 ITLFSGFAQAESESLSSNIQLGIRMAMKEG-----KVNFHYRSMLGYQRGADGKPEIV-- 171
Query: 183 TGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTR-W 241
PE E +++ +IY ++ +E QI L I T + + W
Sbjct: 172 -----------------PE-EAEVVRRIYRRYL-EGCSEGQIQRELTQDGIATAKGVKAW 212
Query: 242 TKGVVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQPLFNA 299
+ +VH IL NEKYVG + K+ T+ + K++ E +++ AIIP+ ++
Sbjct: 213 SHQIVHNILTNEKYVGDALLQKTFTTDCISKKVKKNTGELPQYYIKDNHPAIIPRDIYQR 272
Query: 300 AQAIIHQRSIK 310
Q + +R+ K
Sbjct: 273 VQEEMARRTSK 283
>gi|85717095|ref|ZP_01048055.1| recombinase [Nitrobacter sp. Nb-311A]
gi|85696055|gb|EAQ33953.1| recombinase [Nitrobacter sp. Nb-311A]
Length = 553
Score = 56.6 bits (135), Expect = 4e-06, Method: Composition-based stats.
Identities = 80/312 (25%), Positives = 139/312 (44%), Gaps = 40/312 (12%)
Query: 10 YIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R S+++Q + S + Q R + A +G + Y D SG S RP LI
Sbjct: 6 YARYSSDNQRDASIEDQLRLCRARADREGWKVVGSYTDRAISGASL-LRPGVQELI--AD 62
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
F IL + R R + ++ A + + +GI + +E ++ +++ +
Sbjct: 63 GLKRRFDLILTESLDRLSR--DQEDIAGFYKRMRFVGISIVTLSE----GEV-NELHIGL 115
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDRKS 188
K Y ++L +K G + + G GG L D +F+ + ++
Sbjct: 116 KGTMGALYLKDLADKTRRGLRGRVAEGKSGGG--------LCYGYDVVKQFD---ANGEA 164
Query: 189 LQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVHQ 248
++ DR I E E I+ +I+ D++ ++ R IA +LN + + + + W +H
Sbjct: 165 IRGDRTI----NEAEAAIVRRIFVDYL-AGQSSRTIAMTLNKEGVPGPQGSEWGPTTIHG 219
Query: 249 -------ILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEAIIPQPLF 297
IL NE YVG VWN+ K TGK + NPES+WV + I+ Q ++
Sbjct: 220 NPKRGVGILNNELYVGKLVWNRLRYLKDPDTGKRVSRLNPESEWVIQDVPELRIVDQEVW 279
Query: 298 NAAQAIIHQRSI 309
+AA+A Q+S+
Sbjct: 280 DAAKA--RQKSL 289
>gi|69937525|ref|ZP_00632159.1| Resolvase, N-terminal:Recombinase [Paracoccus denitrificans PD1222]
gi|119386043|ref|YP_917098.1| Recombinase [Paracoccus denitrificans PD1222]
gi|119376638|gb|ABL71402.1| Recombinase [Paracoccus denitrificans PD1222]
Length = 601
Score = 56.2 bits (134), Expect = 5e-06, Method: Composition-based stats.
Identities = 78/306 (25%), Positives = 133/306 (43%), Gaps = 39/306 (12%)
Query: 10 YIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R S++ Q + S Q R + A+++G + EY D SG S +RP +LI +
Sbjct: 6 YARYSSDQQRDASIADQFRMCRLRAEKEGWQVVEEYSDHAISGSSMIQRPGLQALI--MD 63
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
S F +L + R R + ++ A + +K+ +E +I S++ +
Sbjct: 64 SARGRFDMVLAEALDRVSR--DQEDIAGIYKRMRYADVKMFTLSE----GEI-SELHVGL 116
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRL-LLSADGSPKFELKTGDRK 187
K + ++L +K G + +E G + GG +G + A G P
Sbjct: 117 KGTMNALFIKDLADKTRRGLRGRVEDG-KSGGGNSYGYNVVKKFDASGEP---------- 165
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVH 247
++ DR+I + +I +I+ D+ + R IA +LN + + W +H
Sbjct: 166 -IRGDRMI----NAVQAAVIRRIFADY-DSGLSSRTIAMALNREGVPGPMGREWGPSTIH 219
Query: 248 -------QILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEAIIPQPL 296
IL NE YVG VWN+ K TG+ + NPES+WV + I+ Q L
Sbjct: 220 GNRERGTGILHNELYVGRLVWNRLRYVKDPDTGRRVSRLNPESEWVVQDVPDLRIVDQAL 279
Query: 297 FNAAQA 302
++A +A
Sbjct: 280 WDAVKA 285
>gi|154500946|ref|ZP_02038984.1| hypothetical protein BACCAP_04631 [Bacteroides capillosus ATCC
29799]
gi|150269970|gb|EDM97489.1| hypothetical protein BACCAP_04631 [Bacteroides capillosus ATCC
29799]
Length = 302
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 74/295 (25%), Positives = 121/295 (41%), Gaps = 32/295 (10%)
Query: 9 AYIRMSTEHQE--FSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINF 66
AY R+ST+H+E S +IQ R+ K ++ + E SGL +KR +F L+
Sbjct: 25 AYCRVSTDHEEQNSSLEIQERYYAKLIEQTPNWINAGIFSEKVSGLEVKKRQEFQKLLRC 84
Query: 67 VQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFK 126
++G D +L +SR+GR N +S + +GI V++ E +D Q+
Sbjct: 85 CRNGTIDL--VLTKSVSRFGR--NTLDSLRALRELQILGIDVYFEKENLWLHDDQMQVLM 140
Query: 127 AVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFELKTGDR 186
V A + + G I+ GFR G DG+ K +
Sbjct: 141 TVYFAFAQAESEGASQSIRWG----IKEGFRSGKSGYAEFVCFGYKQDGNGKLAID---- 192
Query: 187 KSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDR-NTRWTKGV 245
E + KI+ +I+ K+ I+D L Q IL+ RW++
Sbjct: 193 --------------EPDAKIVRKIF-KMRASEKSLSAISDWLYEQGILSPTGKCRWSRET 237
Query: 246 VHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQWVRVENAFEAIIPQPLFN 298
+ ++L NEKY G + K+ +GK E ++ AII + LF+
Sbjct: 238 ISKLLKNEKYTGDVLLQKTFVKDLFSGKQVKNMGERDRFLYQDHHPAIISRELFD 292
>gi|118725803|ref|ZP_01574439.1| Recombinase [Clostridium cellulolyticum H10]
gi|118664819|gb|EAV71445.1| Recombinase [Clostridium cellulolyticum H10]
Length = 535
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 83/309 (26%), Positives = 135/309 (43%), Gaps = 39/309 (12%)
Query: 2 EYKNLAVAYIRMSTEHQEFSPDIQRR---FIQKYAKEQGLILTREYLDEGRSGLSAEKRP 58
E K AY R+STE +E Q + + + I Y DEG SG + +KR
Sbjct: 25 EIKLRVAAYCRVSTELEEQQSSYQAQVDHYTRAIQTNPKWIFAGIYADEGISGTNTKKRV 84
Query: 59 QFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGN 118
+F +I +G D I+ ISR+ R N + Y + + I V++ E
Sbjct: 85 EFNRMIEDCMAGRIDM--IITKSISRFAR--NTLDCISYIRQLREKNIAVYFEKENINTL 140
Query: 119 DIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPK 178
D ++ + A E R L N + ++ R F+QG ++ ++ + K
Sbjct: 141 DGAGELLITILGSLAQEESRSLST---NTRWGVVHR-FQQG--------KIYVNHN---K 185
Query: 179 FELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILT-DR 237
F G K+ D VI+ PE E ++ +I+ ++ ++ I L + I T
Sbjct: 186 F---LGYTKNENGDLVIV---PE-EAALVKRIFRQYL-EGESIINIKKGLEEEGITTVTG 237
Query: 238 NTRWTKGVVHQILINEKYVGHNVWNKS-----CTSKTGKLRGKNPESQWVRVENAFEAII 292
+W+ V+ ++L NEKY+G + K+ T K K G P+ VE++ EAII
Sbjct: 238 RQKWSTSVIDKMLSNEKYMGDALLQKTYTVDYLTKKRVKNNGIVPQ---YYVEDSHEAII 294
Query: 293 PQPLFNAAQ 301
P+PLF Q
Sbjct: 295 PKPLFYRVQ 303
>gi|119384704|ref|YP_915760.1| Recombinase [Paracoccus denitrificans PD1222]
gi|119374471|gb|ABL70064.1| Recombinase [Paracoccus denitrificans PD1222]
Length = 578
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 78/306 (25%), Positives = 133/306 (43%), Gaps = 39/306 (12%)
Query: 10 YIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R S++ Q + S Q R + A+++G + EY D SG S +RP +LI +
Sbjct: 6 YARYSSDQQRDASIADQFRMCRLRAEKEGWQVVEEYSDHAISGSSMIQRPGLQALI--MD 63
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
S F +L + R R + ++ A + +K+ +E +I S++ +
Sbjct: 64 SARGRFDMVLAEALDRVSR--DQEDIAGIYKRMRYADVKMFTLSE----GEI-SELHVGL 116
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRL-LLSADGSPKFELKTGDRK 187
K + ++L +K G + +E G + GG +G + A G P
Sbjct: 117 KGTMNALFIKDLADKTRRGLRGRVEDG-KSGGGNSYGYNVVKKFDASGEP---------- 165
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVH 247
++ DR+I + +I +I+ D+ + R IA +LN + + W +H
Sbjct: 166 -IRGDRMI----NAVQAAVIRRIFADY-DSGLSSRTIAMALNREGVPGPMGREWGPSTIH 219
Query: 248 -------QILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEAIIPQPL 296
IL NE YVG VWN+ K TG+ + NPES+WV + I+ Q L
Sbjct: 220 GNRERGTGILHNELYVGRLVWNRLRYVKDPDTGRRVSRLNPESEWVVQDVPDLRIVDQAL 279
Query: 297 FNAAQA 302
++A +A
Sbjct: 280 WDAVKA 285
>gi|154252207|ref|YP_001413031.1| Resolvase domain [Parvibaculum lavamentivorans DS-1]
gi|154156157|gb|ABS63374.1| Resolvase domain [Parvibaculum lavamentivorans DS-1]
Length = 549
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 89/343 (25%), Positives = 150/343 (43%), Gaps = 51/343 (14%)
Query: 10 YIRMSTEHQ-EFSPDIQRRFIQKYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQ 68
Y R S+++Q + S + Q R + +A+ QG + Y D SG S RP LI+ Q
Sbjct: 7 YARYSSDNQRDASIEDQLRLCRLHAERQGWKVVDSYSDRAISGASL-LRPGIQELISDAQ 65
Query: 69 SGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAV 128
+ F +L + R R + ++ A + +++ +E ++ S++ +
Sbjct: 66 RQH--FDTVLTESLDRLSR--DQEDIAGLYKRMRFADVRIVTLSE----GEV-SELHIGL 116
Query: 129 KRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLL-LSADGSPKFELKTGDRK 187
K Y ++L +K G + +E G + GG +G + LS G P
Sbjct: 117 KGTMGALYLKDLADKTRRGLRGRVENG-KSGGGLCYGYDVVQRLSESGEP---------- 165
Query: 188 SLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVH 247
++ DR I E E I+ +I+ D++ + R IA LN + + W +H
Sbjct: 166 -VRGDRTI----NESEAAIVRRIFRDYV-AGSSSRTIAQVLNREGVPGPFGKAWGPSTIH 219
Query: 248 Q-------ILINEKYVGHNVWNKSCTSK---TGKLRGK-NPESQWVRVENAFEAIIPQPL 296
IL NE YVG VWN+ K TG+ + N ES+WV + I+ Q L
Sbjct: 220 GNPKRGTGILNNELYVGRLVWNRQRYIKDPDTGRRVSRANLESEWVVQDVPDLRIVEQAL 279
Query: 297 FNAAQAIIHQRSIKLTDEE-----MLDKLRTLLKVKGKLSGLI 334
++ A+A Q ++ L +E ++D+ R K LSGL+
Sbjct: 280 WDHAKA--RQETMALGPQEPGTNPLVDRRRP----KYLLSGLV 316
>gi|126699493|ref|YP_001088390.1| site-specific recombinase [Clostridium difficile 630]
gi|115250930|emb|CAJ68758.1| site-specific recombinase [Clostridium difficile 630]
Length = 501
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 69/279 (24%), Positives = 120/279 (43%), Gaps = 30/279 (10%)
Query: 31 KYAKEQGLILTREYLDEGRSGLSAEKRPQFLSLINFVQSGNADFSHILVYDISRWGRFLN 90
K A+EQ L + E +E SG S E RP+ L L+ +++ N D +LV DI R GR N
Sbjct: 34 KLAREQNLNVI-EIKEELVSGESIEYRPKMLELLGEIKNNNYD--AVLVMDIDRLGRG-N 89
Query: 91 IDESAHYEQICSKMGIKVHYCAEPFKGNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKN 150
+ + K K+ + + ND + + + + A + + + ++ G+
Sbjct: 90 MQDQGLILDTFKKSKTKIITPRKTYDLNDEFDEEYSEFEAFMARKELKLISRRMQRGKIK 149
Query: 151 LIERG--FRQGGPAGFGLRRLLLSADGSPKFELKTGDRKSLQSDRVILIAGPEFEQKIIL 208
IE G Q P G+ ++ L +RV++I ++ ++
Sbjct: 150 SIEEGKFIAQAPPYGYDIKYLN-------------------NKERVLVI---NEDKATVV 187
Query: 209 QIYHDFIYRHKTERQIADSLNAQVILTDRNTRWTKGVVHQILINEKYVGHNVWNKSCTSK 268
+I D + +I++ LN T W + + I+ N+ Y G+ VWNK K
Sbjct: 188 KIIFDMYLKGDGACKISNYLNELGYKTTTGRTWYEKGIRDIIKNKVYCGYIVWNK-VERK 246
Query: 269 TGKLRGKNPESQWVRVENAFEAIIPQPLFNAAQAIIHQR 307
R + E Q + V+ E II + ++N AQ I +R
Sbjct: 247 RNSSRTRGIEEQ-IEVKGKHEPIISEDIWNKAQNIRKKR 284
>gi|50914470|ref|YP_060442.1| Site-specific recombinase [Streptococcus pyogenes MGAS10394]
gi|40218587|gb|AAR83241.1| conserved hypothetical protein [Streptococcus pyogenes]
gi|50261632|gb|AAT72400.1| site-specific recombinase [Streptococcus pyogenes]
gi|50903544|gb|AAT87259.1| Site-specific recombinase [Streptococcus pyogenes MGAS10394]
Length = 521
Score = 55.8 bits (133), Expect = 8e-06, Method: Composition-based stats.
Identities = 79/315 (25%), Positives = 131/315 (41%), Gaps = 43/315 (13%)
Query: 4 KNLAVAYIRMSTEH--QEFSPDIQRRFIQKY-AKEQGLILTREYLDEGRSGLSAEKRPQF 60
K Y R+ST+H Q S + Q R+ +Y + + Y DEG SG + + R F
Sbjct: 25 KRRVAGYARVSTDHEDQTTSYESQMRYYAEYISTRSDWEFVKMYSDEGISGTNTKLRVGF 84
Query: 61 LSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAEPFKGNDI 120
S+I +G D I+ +SR+ R N +S + ++G+++++ E D
Sbjct: 85 KSMIEDALAGKIDL--IITKSVSRFAR--NTVDSLTTVRKLKEVGVEIYFEKENIWTLDS 140
Query: 121 GSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLSADGSPKFE 180
++ + A E R + E V +GLR+ A+G F
Sbjct: 141 KGELLITIMSSLAQEESRSISENV------------------TWGLRKQF--AEGKVHFP 180
Query: 181 LKT--GDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQVILTDR- 237
G K + V+ + E K + I+ + KT IA L Q IL+
Sbjct: 181 YTNVMGFEKGENGEIVV----NQEEAKTVRYIFQQALL-GKTPYSIAKDLTQQGILSPSG 235
Query: 238 NTRWTKGVVHQILINEKYVGHNVWNKSCT-----SKTGKLRGKNPESQWVRVENAFEAII 292
W+ + ++L NEKY G + K+ T K +G+ P+ VEN EAI+
Sbjct: 236 KNHWSSVTIKRMLRNEKYKGDALLQKTYTIDFLSKKKNINKGELPQ---YYVENNHEAIV 292
Query: 293 PQPLFNAAQAIIHQR 307
+ F+A QA + ++
Sbjct: 293 DKETFDAVQASLDRK 307
>gi|89897338|ref|YP_520825.1| hypothetical protein DSY4592 [Desulfitobacterium hafniense Y51]
gi|89336786|dbj|BAE86381.1| hypothetical protein [Desulfitobacterium hafniense Y51]
Length = 537
Score = 55.5 bits (132), Expect = 9e-06, Method: Composition-based stats.
Identities = 75/305 (24%), Positives = 131/305 (42%), Gaps = 44/305 (14%)
Query: 1 MEYKNLAVAYIRMSTEHQEFSPDIQRRFIQKYAKEQGLILTRE-------YLDEGRSGLS 53
++ K AY R+S++ E Q F + Q LI RE Y DE RSG+
Sbjct: 19 LQPKKRVCAYCRVSSDSWE----QQNSFTAQLEYYQPLIKGREDWQFAGIYADEARSGMK 74
Query: 54 AEKRPQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSKMGIKVHYCAE 113
+KR FL ++ + G D I+ ++R+ R N +S + ++GI V + E
Sbjct: 75 LQKRDDFLRMMKDCEKGRIDM--IITKSVTRFAR--NTVDSIQAIRRLKELGIAVFFEKE 130
Query: 114 PFKG-NDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAGFGLRRLLLS 172
++ Q+ + + GE E V + K I + F+ G ++S
Sbjct: 131 NINSLSEKSEQMLTILSSLAQGE-----AESVSSNNKWGILKRFQDG--------TYIIS 177
Query: 173 ADGSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQIADSLNAQV 232
+P + G K+ + +I E E ++ +I+ D++ K IA L+ +
Sbjct: 178 ---TPAY----GYTKNENGEMII----QEVEAAVVRRIFWDYL-NGKGTHIIAKELSEEG 225
Query: 233 ILTDRNTR-WTKGVVHQILINEKYVGHNVWNKSCTSKTGKLRGKNPESQWVR--VENAFE 289
+ T R W V+ +IL+N Y G+ + KS T++ + K Q + +E+
Sbjct: 226 VPTIRGAETWQDAVIKEILVNPVYTGNLLQQKSLTTEVIPFKRKRNRGQLPQYLIEDNHA 285
Query: 290 AIIPQ 294
AIIP+
Sbjct: 286 AIIPR 290
>gi|125974204|ref|YP_001038114.1| Recombinase [Clostridium thermocellum ATCC 27405]
gi|125714429|gb|ABN52921.1| Recombinase [Clostridium thermocellum ATCC 27405]
Length = 442
Score = 55.5 bits (132), Expect = 1e-05, Method: Composition-based stats.
Identities = 73/267 (27%), Positives = 118/267 (44%), Gaps = 30/267 (11%)
Query: 44 YLDEGRSGLSAEKRPQFLSLINFVQSGNADFSHILVYDISRWGRFLNIDESAHYEQICSK 103
Y DEG SG + +KR QF +I ++G D I+ ISR+ R N ++ +Y + +
Sbjct: 41 YADEGISGTNTKKREQFNKMIEDCKAGKIDM--IITKSISRFAR--NTLDTLNYVRQLKE 96
Query: 104 MGIKVHYCAEPFKGNDIGSQIFKAVKRWSAGEYCRELGEKVFNGQKNLIERGFRQGGPAG 163
+GI V + E D ++ + A + R + E G I R F QG
Sbjct: 97 LGIGVIFEKENINTLDSKGEVLLTILSSLAQDESRSISENSTWG----IRRRFEQG---- 148
Query: 164 FGLRRLLLSADGSPKFELKTGDRKSLQSDRVILIAGPEFEQKIILQIYHDFIYRHKTERQ 223
+L ++ KF G K + + VI E + KI+ +IY D++ K +
Sbjct: 149 ----KLHIN---HTKF---LGYDKDEEGNLVI----NEKQAKIVRRIYKDYL-DGKGANR 193
Query: 224 IADSLNAQVILT-DRNTRWTKGVVHQILINEKYVGHNVWNKSCTSK--TGKLRGKNPESQ 280
IA L + + + +W + + +IL NEKY G + K+ T T K N E
Sbjct: 194 IARELEEEGVPNWNGKPKWYESSIRKILSNEKYKGDALLQKTYTVDFLTKKRAVNNGEVP 253
Query: 281 WVRVENAFEAIIPQPLFNAAQAIIHQR 307
VE + AII + ++ A Q + +R
Sbjct: 254 MYYVEESHPAIIDKEIWEAVQLEMERR 280
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.320 0.137 0.403
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,956,184,413
Number of Sequences: 5470121
Number of extensions: 83707176
Number of successful extensions: 176592
Number of sequences better than 1.0e-05: 163
Number of HSP's better than 0.0 without gapping: 43
Number of HSP's successfully gapped in prelim test: 120
Number of HSP's that attempted gapping in prelim test: 176273
Number of HSP's gapped (non-prelim): 191
length of query: 526
length of database: 1,894,087,724
effective HSP length: 138
effective length of query: 388
effective length of database: 1,139,211,026
effective search space: 442013878088
effective search space used: 442013878088
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 132 (55.5 bits)