R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 258 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|3834310|gb|AAC83026.1| (AC005679) Similar to Ubiquitin-conjugating enzyme
E2-17 KD gb|D83004 from Homo sapiens. ESTs gb|T88233, gb|Z24464,
gb|N37265, gb|H36151, gb|Z34711, gb|AA040983, and gb|T22122 come
from this gene. [Arabidopsis thaliana]
Length = 163
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 163
0 50 100 150
Plus Strand HSPs:
Score = 374 (131.7 bits), Expect = 1.7e-33, P = 1.7e-33
Identities = 75/96 (78%), Positives = 76/96 (79%), Frame = +2
Query: 35 MANSXLPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFL 214
MANS LPR II TQRLL EPAPGISASPSE NMRY + ILGPTQS YEGGV KL LFL
Sbjct: 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEDNMRYFNVMILGPTQSPYEGGVFKLELFL 60
Query: 215 PXXYPXGAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
P YP APK RFLTKIYHP IDKLG ICLD LKDK
Sbjct: 61 PEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK 96
>gi|9802775|gb|AAF99844.1|AC051629_11 (AC051629) Putative ubiquitin-conjugating
enzyme E2 [Arabidopsis thaliana]
Length = 153
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
Plus Strand HSPs:
Score = 374 (131.7 bits), Expect = 1.7e-33, P = 1.7e-33
Identities = 75/96 (78%), Positives = 76/96 (79%), Frame = +2
Query: 35 MANSXLPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFL 214
MANS LPR II TQRLL EPAPGISASPSE NMRY + ILGPTQS YEGGV KL LFL
Sbjct: 1 MANSNLPRRIIKETQRLLSEPAPGISASPSEENMRYFNVMILGPTQSPYEGGVFKLELFL 60
Query: 215 PXXYPXGAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
P YP APK RFLTKIYHP IDKLG ICLD LKDK
Sbjct: 61 PEEYPMAAPKVRFLTKIYHPNIDKLGRICLDILKDK 96
>gi|5381319|gb|AAD42941.1|AF091621_1 (AF091621) ubiquitin-conjugating enzyme E2
[Catharanthus roseus]
Length = 153
Frame 2 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
Plus Strand HSPs:
Score = 351 (123.6 bits), Expect = 4.6e-31, P = 4.6e-31
Identities = 71/96 (73%), Positives = 73/96 (76%), Frame = +2
Query: 35 MANSXLPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFL 214
MANS LP+ II TQRLL EPAPGISASPSE NMR + ILGP QS YEGGV KL LFL
Sbjct: 1 MANSNLPKRIIKETQRLLSEPAPGISASPSEDNMRDFNVMILGPAQSPYEGGVFKLELFL 60
Query: 215 PXXYPXGAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
P YP PK RFLTKIYHP IDKLG ICLD LKDK
Sbjct: 61 PEEYPMAPPKVRFLTKIYHPNIDKLGRICLDILKDK 96
>gi|464982|sp|P35128|UBC3_DROME UBIQUITIN-CONJUGATING ENZYME E2-17 KDA
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN) (BENDLESS
PROTEIN) >gi|422431|pir||S35793 gene bendless protein - fruit fly
(Drosophila melanogaster) >gi|304668|gb|AAA28392.1| (L20126) neural
protein [Drosophila melanogaster] >gi|546724|gb|AAB30753.1|
(S70118) ubiquitin-conjugating enzyme homolog=ben [Drosophila
melanogaster, pupa, Peptide, 151 aa] >gi|7292948|gb|AAF48338.1|
(AE003494) ben gene product [Drosophila melanogaster]
>gi|743005|prf||2011314A bendless gene [Drosophila melanogaster]
Length = 151
Frame 2 hits (HSPs): _______________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | || 151
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 44..91
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 1..148
Entrez binding site: UBIQUITIN (BY SIMILARITY). 87
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..146
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..145
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 76..90
__________________
Plus Strand HSPs:
Score = 307 (108.1 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 59/93 (63%), Positives = 65/93 (69%), Frame = +2
Query: 44 SXLPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXX 223
S LPR II TQRL+ EP PGI+A P E N RY + GP S +EGGV KL LFLP
Sbjct: 2 SSLPRRIIKETQRLMQEPVPGINAIPDENNARYFHVIVTGPNDSPFEGGVFKLELFLPED 61
Query: 224 YPXGAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
YP APK RF+TKIYHP ID+LG ICLD LKDK
Sbjct: 62 YPMSAPKVRFITKIYHPNIDRLGRICLDVLKDK 94
>gi|7323812|gb|AAF59575.1| (AC024817) contains similarity to SW:UBCC_HUMAN
[Caenorhabditis elegans]
Length = 428
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 428
0 150 300
Plus Strand HSPs:
Score = 307 (108.1 bits), Expect = 2.1e-26, P = 2.1e-26
Identities = 60/91 (65%), Positives = 64/91 (70%), Frame = +2
Query: 50 LPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYP 229
LPR II TQRLL +P PGISA+P E N RY I GP S + GGV KL LFLP YP
Sbjct: 282 LPRRIIKETQRLLADPVPGISANPDESNARYFHVMIAGPDDSPFAGGVFKLELFLPEEYP 341
Query: 230 XGAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
APK RF+TKIYHP IDKLG ICLD LKDK
Sbjct: 342 MAAPKVRFMTKIYHPNIDKLGRICLDILKDK 372
>gi|4507793 ref|NP_003339.1| ubiquitin-conjugating enzyme E2N (homologous to
yeast UBC13) [Homo sapiens] >gi|12737571 ref|XP_006823.2|
ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13) [Homo
sapiens] >gi|2501432|sp|Q16781|UBCC_HUMAN UBIQUITIN-CONJUGATING
ENZYME E2-17 KDA (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER
PROTEIN) (UBC13) >gi|2146981|pir||JC4894 ubiquitin--protein ligase
(EC 6.3.2.19) E2N - human >gi|1181558|dbj|BAA11675.1| (D83004)
ubiquitin-conjugating enzyme E2 UbcH-ben [Homo sapiens]
>gi|12653255|gb|AAH00396.1|AAH00396 (BC000396)
ubiquitin-conjugating enzyme E2N (homologous to yeast UBC13) [Homo
sapiens]
Length = 152
Frame 2 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
Plus Strand HSPs:
Score = 306 (107.7 bits), Expect = 2.7e-26, P = 2.7e-26
Identities = 59/91 (64%), Positives = 62/91 (68%), Frame = +2
Query: 50 LPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYP 229
LPR II TQRLL EP PGI A P E N RY I GP S +EGG KL LFLP YP
Sbjct: 4 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYP 63
Query: 230 XGAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
APK RF+TKIYHP +DKLG ICLD LKDK
Sbjct: 64 MAAPKVRFMTKIYHPNVDKLGRICLDILKDK 94
>gi|12249089|dbj|BAB20414.1| (AB032739) bendless protein [Rattus norvegicus]
Length = 152
Frame 2 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
Plus Strand HSPs:
Score = 306 (107.7 bits), Expect = 2.7e-26, P = 2.7e-26
Identities = 59/91 (64%), Positives = 62/91 (68%), Frame = +2
Query: 50 LPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYP 229
LPR II TQRLL EP PGI A P E N RY I GP S +EGG KL LFLP YP
Sbjct: 4 LPRRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGPQDSPFEGGTFKLELFLPEEYP 63
Query: 230 XGAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
APK RF+TKIYHP +DKLG ICLD LKDK
Sbjct: 64 MAAPKVRFMTKIYHPNVDKLGRICLDILKDK 94
>gi|7287841|gb|AAF44879.1|AE003406_84 (AE003416) hypothetical protein
[Drosophila melanogaster]
Length = 201
Frame 2 hits (HSPs): _______________________
__________________________________________________
Database sequence: | | | | || 201
0 50 100 150 200
Plus Strand HSPs:
Score = 280 (98.6 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 56/90 (62%), Positives = 63/90 (70%), Frame = +2
Query: 53 PRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPX 232
PR II TQRLL +P PGISA+P E N RY + GP S +EGG KL LFLP YP
Sbjct: 6 PR-IIKETQRLLEDPVPGISATPDECNARYFHVLVTGPKDSPFEGGNFKLELFLPEDYPM 64
Query: 233 GAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
APK RFLTKI+HP ID++G ICLD LKDK
Sbjct: 65 KAPKVRFLTKIFHPNIDRVGRICLDILKDK 94
>gi|7298165|gb|AAF53401.1| (AE003644) BG:DS01486.1 gene product [Drosophila
melanogaster]
Length = 151
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | || 151
0 50 100 150
Plus Strand HSPs:
Score = 280 (98.6 bits), Expect = 1.5e-23, P = 1.5e-23
Identities = 56/90 (62%), Positives = 63/90 (70%), Frame = +2
Query: 53 PRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPX 232
PR II TQRLL +P PGISA+P E N RY + GP S +EGG KL LFLP YP
Sbjct: 6 PR-IIKETQRLLEDPVPGISATPDECNARYFHVLVTGPKDSPFEGGNFKLELFLPEDYPM 64
Query: 233 GAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
APK RFLTKI+HP ID++G ICLD LKDK
Sbjct: 65 KAPKVRFLTKIFHPNIDRVGRICLDILKDK 94
>gi|6320297 ref|NP_010377.1| ubiquitin-conjugating enzyme; Ubc13p
[Saccharomyces cerevisiae] >gi|1717864|sp|P52490|UBCC_YEAST
UBIQUITIN-CONJUGATING ENZYME E2-17.5 KDA (UBIQUITIN-PROTEIN LIGASE)
(UBIQUITIN CARRIER PROTEIN) >gi|2131382|pir||S58092 hypothetical
protein YDR092w - yeast (Saccharomyces cerevisiae)
>gi|914876|emb|CAA90451.1| (Z50111) unknown [Saccharomyces
cerevisiae] >gi|1480355|emb|CAA67806.1| (X99443)
ubiquitin-conjugating enzyme [Saccharomyces cerevisiae]
Length = 153
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
Plus Strand HSPs:
Score = 276 (97.2 bits), Expect = 4.1e-23, P = 4.1e-23
Identities = 51/91 (56%), Positives = 64/91 (70%), Frame = +2
Query: 44 SXLPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXX 223
+ LP+ II T++L+ +P PGI+A P + N+RY I GP QS YE G+ +L L+LP
Sbjct: 2 ASLPKRIIKETEKLVSDPVPGITAEPHDDNLRYFQVTIEGPEQSPYEDGIFELELYLPDD 61
Query: 224 YPXGAPKXRFLTKIYHPXIDKLGXICLDXLK 316
YP APK RFLTKIYHP ID+LG ICLD LK
Sbjct: 62 YPMEAPKVRFLTKIYHPNIDRLGRICLDVLK 92
>gi|6996506|emb|CAB75567.1| (AL139794) ubiquitin-conjugating enzyme E2
[Leishmania major]
Length = 148
Frame 2 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 259 (91.2 bits), Expect = 2.6e-21, P = 2.6e-21
Identities = 50/91 (54%), Positives = 62/91 (68%), Frame = +2
Query: 50 LPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYP 229
L II T++L E PGI+A+P++ N RY I GP QS YEGG+ +L LFLP YP
Sbjct: 2 LTTRIIKETEKLQKECPPGITATPTKENPRYFMVTIQGPPQSCYEGGLFRLELFLPEEYP 61
Query: 230 XGAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK RFLT+IYHP +DK+G ICLD +KDK
Sbjct: 62 MKPPKVRFLTRIYHPNVDKVGRICLDIIKDK 92
>gi|7493571|pir||T37532 ubiquitin-conjugating enzyme - fission yeast
(Schizosaccharomyces pombe) >gi|2330662|emb|CAB11183.1| (Z98595)
ubiquitin-conjugating enzyme [Schizosaccharomyces pombe]
Length = 148
Frame 2 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 253 (89.1 bits), Expect = 1.1e-20, P = 1.1e-20
Identities = 49/89 (55%), Positives = 57/89 (64%), Frame = +2
Query: 50 LPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYP 229
LP+ II + L +P PGI A+P+E N+RY + GP QS YEGG L LFLP YP
Sbjct: 3 LPKRIIKEIETLTRDPPPGIVAAPTEDNLRYFKITMEGPQQSAYEGGKFHLELFLPDEYP 62
Query: 230 XGAPKXRFLTKIYHPXIDKLGXICLDXLK 316
P RFLTKIYHP +DKLG ICL LK
Sbjct: 63 MMPPNVRFLTKIYHPNVDKLGRICLSTLK 91
>gi|6941766|emb|CAB72341.1| (AL109622) dJ526F5.1 (novel protein similar to
UBE2N (ubiquitin-conjugating enzyme E2N (homologous to yeast
UBC13))) [Homo sapiens]
Length = 153
Frame 2 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | 153
0 50 100 150
Plus Strand HSPs:
Score = 249 (87.7 bits), Expect = 2.9e-20, P = 2.9e-20
Identities = 52/92 (56%), Positives = 57/92 (61%), Frame = +2
Query: 50 LPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQ-SXYEGGVXKLXLFLPXXY 226
LP II TQRLL EP PGI A P E N RY I G ++ S +EGG K L L Y
Sbjct: 4 LPHRIIKETQRLLAEPVPGIKAEPDESNARYFHVVIAGESKDSPFEGGTFKRELLLAEEY 63
Query: 227 PXGAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
P APK RF+TKIYHP +DKL I LD LKDK
Sbjct: 64 PMAAPKVRFMTKIYHPNVDKLERISLDILKDK 95
>gi|6690139|gb|AAF24004.1|AF083031_1 (AF083031) ubiquitin conjugating enzyme
[Guillardia theta] >gi|6690600|gb|AAF24208.1|AF165818_1 (AF165818)
ubiquitin-conjugating enzyme [Guillardia theta]
>gi|12580660|emb|CAC26977.1| (AJ010592) ubiquitin conjugating
enzyme [Guillardia theta] >gi|12580795|emb|CAC27113.1| (AJ010592)
ubiquitin conjugating enzyme [Guillardia theta]
Length = 147
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 190 (66.9 bits), Expect = 5.3e-14, P = 5.3e-14
Identities = 37/80 (46%), Positives = 48/80 (60%), Frame = +2
Query: 83 LLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTK 262
LL +P SA PS+ N+ + I+GP+ S Y GGV L + P YP PK +F TK
Sbjct: 13 LLKDPPSNCSAGPSDENLFRWTASIIGPSDSPYAGGVFFLSILFPPDYPFKPPKVQFTTK 72
Query: 263 IYHPXIDKLGXICLDXLKDK 322
IYHP I+ G ICLD L+D+
Sbjct: 73 IYHPNINSNGSICLDILRDQ 92
>gi|7296089|gb|AAF51384.1| (AE003586) CG5440 gene product [Drosophila
melanogaster]
Length = 164
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | | 164
0 50 100 150
Plus Strand HSPs:
Score = 185 (65.1 bits), Expect = 1.8e-13, P = 1.8e-13
Identities = 40/97 (41%), Positives = 51/97 (52%), Frame = +2
Query: 32 TMANSXLPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLF 211
T +NS + R I + +P SA P E N+ + I+GP S YE G+ KL +F
Sbjct: 17 TCSNSAVKR-IQKELDEITRDPPQYCSAGPKEDNLYEWTSTIIGPADSVYENGIFKLDIF 75
Query: 212 LPXXYPXGAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
P YP P F T IYH I +LG ICLD LK+K
Sbjct: 76 FPVEYPFAPPVVIFRTPIYHCNIHRLGFICLDILKEK 112
>gi|7661808 ref|NP_054895.1| HSPC150 protein similar to ubiquitin-conjugating
enzyme [Homo sapiens] >gi|11425469 ref|XP_001883.1| HSPC150 protein
similar to ubiquitin-conjugating enzyme [Homo sapiens]
>gi|6841522|gb|AAF29114.1|AF161499_1 (AF161499) HSPC150 [Homo
sapiens] >gi|7020639|dbj|BAA91211.1| (AK000504) unnamed protein
product [Homo sapiens] >gi|7416120|dbj|BAA93711.1| (AB032931)
ubiquitin-conjugating enzyme isolog [Homo sapiens]
>gi|7677072|gb|AAF67016.1|AF160215_1 (AF160215)
ubiquitin-conjugating enzyme E2 [Homo sapiens]
Length = 197
Frame 2 hits (HSPs): ____________________
__________________________________________________
Database sequence: | | | | | 197
0 50 100 150
Plus Strand HSPs:
Score = 177 (62.3 bits), Expect = 1.3e-12, P = 1.3e-12
Identities = 37/78 (47%), Positives = 43/78 (55%), Frame = +2
Query: 83 LLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTK 262
L EP PGI+ + M ILG + YE GV KL + +P YP P+ RFLT
Sbjct: 14 LATEPPPGITCWQDKDQMDDLRAQILGGANTPYEKGVFKLEVIIPERYPFEPPQIRFLTP 73
Query: 263 IYHPXIDKLGXICLDXLK 316
IYHP ID G ICLD LK
Sbjct: 74 IYHPNIDSAGRICLDVLK 91
>gi|6320264 ref|NP_010344.1| ubiquitin-conjugating enzyme; Ubc5p [Saccharomyces
cerevisiae] >gi|136646|sp|P15732|UBC5_YEAST UBIQUITIN-CONJUGATING
ENZYME E2-16 KD (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER
PROTEIN) >gi|101686|pir||S22858 ubiquitin--protein ligase (EC
6.3.2.19) UBC5 - yeast (Saccharomyces cerevisiae)
>gi|295934|emb|CAA35529.1| (X17494) ubiquitin-conjugating enzyme
[Saccharomyces cerevisiae] >gi|706825|emb|CAA58975.1| (X84162)
ubiquitin conjugating enzyme [Saccharomyces cerevisiae]
>gi|798910|emb|CAA89088.1| (Z49209) Ubc5p [Saccharomyces
cerevisiae] >gi|1431507|emb|CAA98877.1| (Z74355) ORF YDR059c
[Saccharomyces cerevisiae]
Length = 148
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 175 (61.6 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 34/77 (44%), Positives = 43/77 (55%), Frame = +2
Query: 92 EPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTKIYH 271
+P SA P ++ + I+GP+ S Y GGV L + P YP PK F TKIYH
Sbjct: 17 DPPASCSAGPVGDDLYHWQASIMGPSDSPYAGGVFFLSIHFPTDYPFKPPKVNFTTKIYH 76
Query: 272 PXIDKLGXICLDXLKDK 322
P I+ G ICLD LKD+
Sbjct: 77 PNINSSGNICLDILKDQ 93
>gi|4581117|gb|AAD24607.1|AC005825_14 (AC005825) putative ubiquitin-conjugating
enzyme E2 [Arabidopsis thaliana]
Length = 148
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 175 (61.6 bits), Expect = 2.0e-12, P = 2.0e-12
Identities = 35/89 (39%), Positives = 49/89 (55%), Frame = +2
Query: 56 RXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXG 235
R I+ + L +P SA P+ +M + I+GP +S Y GGV + + P YP
Sbjct: 4 RRILKELKELQRDPPVSCSAGPTGEDMFHWQATIMGPNESPYSGGVFLVNIHFPPDYPFK 63
Query: 236 APKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK F TK++HP I+ G ICLD LKD+
Sbjct: 64 PPKVVFRTKVFHPNINSNGNICLDILKDQ 92
>gi|6319556 ref|NP_009638.1| ubiquitin-conjugating enzyme; Ubc4p [Saccharomyces
cerevisiae] >gi|136645|sp|P15731|UBC4_YEAST UBIQUITIN-CONJUGATING
ENZYME E2-16 KDA (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER
PROTEIN) >gi|101685|pir||S22857 ubiquitin--protein ligase (EC
6.3.2.19) UBC4 - yeast (Saccharomyces cerevisiae)
>gi|5107650|pdb|1QCQ|A Chain A, Ubiquitin Conjugating Enzyme
>gi|295933|emb|CAA35528.1| (X17493) ubiquitin conjugating enzyme
[Saccharomyces cerevisiae] >gi|536344|emb|CAA85027.1| (Z35951) ORF
YBR082c [Saccharomyces cerevisiae] >gi|974207|emb|CAA53942.1|
(X76294) identical to UBC4 S.cerevisiae; ORF YBRO45 [Saccharomyces
cerevisiae]
Length = 148
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 34/77 (44%), Positives = 42/77 (54%), Frame = +2
Query: 92 EPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTKIYH 271
+P SA P ++ + I+GP S Y GGV L + P YP PK F TKIYH
Sbjct: 17 DPPTSCSAGPVGDDLYHWQASIMGPADSPYAGGVFFLSIHFPTDYPFKPPKISFTTKIYH 76
Query: 272 PXIDKLGXICLDXLKDK 322
P I+ G ICLD LKD+
Sbjct: 77 PNINANGNICLDILKDQ 93
>gi|464981|sp|P35135|UBC4_LYCES UBIQUITIN-CONJUGATING ENZYME E2-17 KD
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|388207|gb|AAA34125.1| (L23762) ubiquitin carrier protein
[Lycopersicon esculentum]
Length = 148
Frame 2 hits (HSPs): ______________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 42..89
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..144
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..143
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 34/89 (38%), Positives = 48/89 (53%), Frame = +2
Query: 56 RXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXG 235
+ I+ + L +P SA P +M + I+GPT S Y GGV + + P YP
Sbjct: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPTDSPYAGGVFLVSIHFPPDYPFK 63
Query: 236 APKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK F TK++HP I+ G ICLD LK++
Sbjct: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQ 92
>gi|1717850|sp|P52483|UB6B_MOUSE UBIQUITIN-CONJUGATING ENZYME E2-23 KDA
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|1072386|emb|CAA63352.1| (X92664) ubiquitin-conjugating enzyme
UbcM2 [Mus musculus]
Length = 207
Frame 2 hits (HSPs): _________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 102..149
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 59..206
Entrez binding site: UBIQUITIN (BY SIMILARITY). 145
PFAM UQ_con: Ubiquitin-conjugating enzyme 59..204
PRODOM PD073724: UB6B_MOUSE 1..50
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 52..203
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 134..148
__________________
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 40/101 (39%), Positives = 48/101 (47%), Frame = +2
Query: 17 LQSNSTMANSXLPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVX 196
L S +T S + I + +P P SA P N+ ILGP S YEGGV
Sbjct: 51 LSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVF 110
Query: 197 KLXLFLPXXYPXGAPKXRFLTKIYHPXIDKLGXICLDXLKD 319
L + YP PK F T+IYH I+ G ICLD LKD
Sbjct: 111 FLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKD 151
>gi|5454146 ref|NP_006348.1| ubiquitin-conjugating enzyme E2E 3 (homologous to
yeast UBC4/5) [Homo sapiens] >gi|6678477 ref|NP_033480.1|
ubiquitin-conjugating enzyme 4 [Mus musculus]
>gi|2190990|gb|AAB60948.1| (AF003346) ubiquitin-conjugating enzyme
UbcM2 [Mus musculus] >gi|4586930|dbj|BAA76544.1| (AB017644)
ubiquitin-conjugating enzyme E2 [Homo sapiens]
>gi|5114059|gb|AAD40197.1| (AF085362) UbcM2 [Homo sapiens]
Length = 207
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 207
0 50 100 150 200
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 40/101 (39%), Positives = 48/101 (47%), Frame = +2
Query: 17 LQSNSTMANSXLPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVX 196
L S +T S + I + +P P SA P N+ ILGP S YEGGV
Sbjct: 51 LSSKTTAKLSTSAKRIQKELAEITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVF 110
Query: 197 KLXLFLPXXYPXGAPKXRFLTKIYHPXIDKLGXICLDXLKD 319
L + YP PK F T+IYH I+ G ICLD LKD
Sbjct: 111 FLDITFSSDYPFKPPKVTFRTRIYHCNINSQGVICLDILKD 151
>gi|12643427|sp|P35134|UBCB_ARATH UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 11
(UBIQUITIN-PROTEIN LIGASE 11) (UBIQUITIN CARRIER PROTEIN 11)
>gi|12322738|gb|AAG51362.1|AC012562_23 (AC012562) putative
ubiquitin conjugating enzyme; 52410-53412 [Arabidopsis thaliana]
Length = 148
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 171 (60.2 bits), Expect = 5.4e-12, P = 5.4e-12
Identities = 34/89 (38%), Positives = 48/89 (53%), Frame = +2
Query: 56 RXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXG 235
+ I+ + L +P SA P +M + I+GP +S Y GGV + + P YP
Sbjct: 4 KRILKELKDLQKDPPSNCSAGPVAEDMFHWQATIMGPPESPYAGGVFLVSIHFPPDYPFK 63
Query: 236 APKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK F TK+YHP I+ G ICLD LK++
Sbjct: 64 PPKVSFKTKVYHPNINSNGSICLDILKEQ 92
>gi|464987|sp|P35133|UBCA_ARATH UBIQUITIN-CONJUGATING ENZYME E2-17 KD 10
(UBIQUITIN-PROTEIN LIGASE 10) (UBIQUITIN CARRIER PROTEIN 10)
>gi|421858|pir||S32672 ubiquitin--protein ligase (EC 6.3.2.19)
UBC10 - Arabidopsis thaliana >gi|297878|emb|CAA78715.1| (Z14991)
ubiquitin conjugating enzyme [Arabidopsis thaliana]
>gi|349213|gb|AAA32895.1| (L00640) ubiquitin conjugating enzyme
[Arabidopsis thaliana] >gi|9759177|dbj|BAB09792.1| (AB013388)
ubiquitin-conjugating enzyme E2-17 kD 10 (ubiquitin-protein ligase
10) (ubiquitin carrier protein 10) [Arabidopsis thaliana]
>gi|11692932|gb|AAG40069.1|AF324718_1 (AF324718) K19E1.10
[Arabidopsis thaliana] >gi|11762158|gb|AAG40357.1|AF325005_1
(AF325005) F17O14.16 [Arabidopsis thaliana]
>gi|11908050|gb|AAG41454.1|AF326872_1 (AF326872) putative
ubiquitin-conjugating enzyme E2-17 kD 10(ubiquitin-protein ligase
10)(ubiquitin carrier protein10) [Arabidopsis thaliana]
Length = 148
Frame 2 hits (HSPs): ______________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 42..89
DOMO DM00225: UBIQUITIN-CONJUGATINGENZYMES 1..146
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..144
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..143
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 169 (59.5 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 33/89 (37%), Positives = 49/89 (55%), Frame = +2
Query: 56 RXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXG 235
+ I+ + L +P SA P +M + I+GP++S Y GGV + + P YP
Sbjct: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSESPYAGGVFLVTIHFPPDYPFK 63
Query: 236 APKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK F TK++HP I+ G ICLD LK++
Sbjct: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQ 92
>gi|464985|sp|P35131|UBC8_ARATH UBIQUITIN-CONJUGATING ENZYME E2-17 KD 8
(UBIQUITIN-PROTEIN LIGASE 8) (UBIQUITIN CARRIER PROTEIN 8)
(UBCAT4A) >gi|398699|emb|CAA78713.1| (Z14989) ubiquitin conjugating
enzyme homolog [Arabidopsis thaliana] >gi|10178024|dbj|BAB11476.1|
(AB005233) ubiquitin-conjugating enzyme E2-17 kD 8
(ubiquitin-protein ligase 8) (ubiquitin carrier protein 8)
[Arabidopsis thaliana] >gi|11762166|gb|AAG40361.1|AF325009_1
(AF325009) F22C12.2 [Arabidopsis thaliana]
Length = 148
Frame 2 hits (HSPs): ______________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 42..89
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..144
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..143
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 169 (59.5 bits), Expect = 8.8e-12, P = 8.8e-12
Identities = 33/89 (37%), Positives = 48/89 (53%), Frame = +2
Query: 56 RXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXG 235
+ I+ + L +P SA P +M + I+GP +S Y GGV + + P YP
Sbjct: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPAESPYSGGVFLVTIHFPPDYPFK 63
Query: 236 APKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK F TK++HP I+ G ICLD LK++
Sbjct: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQ 92
>gi|464986|sp|P35132|UBC9_ARATH UBIQUITIN-CONJUGATING ENZYME E2-17 KD 9
(UBIQUITIN-PROTEIN LIGASE 9) (UBIQUITIN CARRIER PROTEIN 9)
(UBCAT4B) >gi|421857|pir||S32674 ubiquitin--protein ligase (EC
6.3.2.19) UBC9 - Arabidopsis thaliana >gi|297884|emb|CAA78714.1|
(Z14990) ubiquitin conjugating enzyme homolog [Arabidopsis
thaliana] >gi|349211|gb|AAA32894.1| (L00639) ubiquitin conjugating
enzyme [Arabidopsis thaliana] >gi|600391|emb|CAA51201.1| (X72626)
ubiquitin conjugating enzyme E2 [Arabidopsis thaliana]
>gi|4455355|emb|CAB36765.1| (AL035524) ubiquitin-protein ligase
UBC9 [Arabidopsis thaliana] >gi|7269650|emb|CAB79598.1| (AL161572)
ubiquitin-protein ligase UBC9 [Arabidopsis thaliana]
Length = 148
Frame 2 hits (HSPs): ______________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 42..89
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..144
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..143
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 168 (59.1 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/89 (37%), Positives = 48/89 (53%), Frame = +2
Query: 56 RXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXG 235
+ I+ + L +P SA P +M + I+GP+ S Y GGV + + P YP
Sbjct: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFK 63
Query: 236 APKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK F TK++HP I+ G ICLD LK++
Sbjct: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQ 92
>gi|5917672|gb|AAD55983.1|AF161722_1 (AF161722) ubiquitin-conjugating protein
[Magnaporthe grisea]
Length = 147
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 168 (59.1 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 32/77 (41%), Positives = 43/77 (55%), Frame = +2
Query: 92 EPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTKIYH 271
+P SA P ++ + I+GP+ S Y GGV L + P YP PK F T+IYH
Sbjct: 16 DPPSSCSAGPVGEDLFHWQATIMGPSDSPYAGGVFFLAIHFPTDYPFKPPKVNFTTRIYH 75
Query: 272 PXIDKLGXICLDXLKDK 322
P I+ G ICLD L+D+
Sbjct: 76 PNINSNGSICLDILRDQ 92
>gi|11762186|gb|AAG40371.1|AF325019_1 (AF325019) AT4g27960 [Arabidopsis
thaliana]
Length = 178
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | 178
0 50 100 150
Plus Strand HSPs:
Score = 168 (59.1 bits), Expect = 1.1e-11, P = 1.1e-11
Identities = 33/89 (37%), Positives = 48/89 (53%), Frame = +2
Query: 56 RXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXG 235
+ I+ + L +P SA P +M + I+GP+ S Y GGV + + P YP
Sbjct: 34 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPSDSPYSGGVFLVTIHFPPDYPFK 93
Query: 236 APKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK F TK++HP I+ G ICLD LK++
Sbjct: 94 PPKVAFRTKVFHPNINSNGSICLDILKEQ 122
>gi|441457|emb|CAA51821.1| (X73419) ubiquitin conjugating enzyme E2
[Lycopersicon esculentum]
Length = 148
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 167 (58.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 33/89 (37%), Positives = 47/89 (52%), Frame = +2
Query: 56 RXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXG 235
+ I+ + L +P SA P +M + I+GP S Y GGV + + P YP
Sbjct: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIMGPADSPYSGGVFLVTIHFPPDYPFK 63
Query: 236 APKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK F TK++HP I+ G ICLD LK++
Sbjct: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQ 92
>gi|477134|pir||A48145 ubiquitin-conjugating enzyme ubc-2 - Caenorhabditis
elegans
Length = 147
Frame 2 hits (HSPs): ____________________________
Annotated Domains: ______
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 167 (58.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 34/82 (41%), Positives = 45/82 (54%), Frame = +2
Query: 77 QRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFL 256
Q L EP SA P ++ + I+GP +S Y+GGV L + P YP PK F
Sbjct: 11 QDLGREPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 257 TKIYHPXIDKLGXICLDXLKDK 322
T+IYHP I+ G ICLD L+ +
Sbjct: 71 TRIYHPNINSNGSICLDILRSQ 92
>gi|1174849|sp|P46595|UBC4_SCHPO UBIQUITIN-CONJUGATING ENZYME E2-16 KD
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|7493572|pir||T39300 ubiquitin-conjugating enzyme - fission
yeast (Schizosaccharomyces pombe) >gi|2959363|emb|CAA17917.1|
(AL022117) ubiquitin-conjugating enzyme e2-16 kd
[Schizosaccharomyces pombe]
Length = 147
Frame 2 hits (HSPs): __________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 42..89
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..144
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..143
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 167 (58.8 bits), Expect = 1.4e-11, P = 1.4e-11
Identities = 32/77 (41%), Positives = 42/77 (54%), Frame = +2
Query: 92 EPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTKIYH 271
+P SA P ++ + I+GP S Y GGV L + P YP PK F T+IYH
Sbjct: 16 DPPSSCSAGPVGDDLFHWQATIMGPADSPYAGGVFFLSIHFPTDYPFKPPKVNFTTRIYH 75
Query: 272 PXIDKLGXICLDXLKDK 322
P I+ G ICLD L+D+
Sbjct: 76 PNINSNGSICLDILRDQ 92
>gi|4507777 ref|NP_003331.1| ubiquitin-conjugating enzyme E2D 3 (homologous to
yeast UBC4/5); UbcH5C [Homo sapiens] >gi|11435728 ref|XP_003400.1|
ubiquitin-conjugating enzyme E2D 3 (homologous to yeast UBC4/5)
[Homo sapiens] >gi|1351345|sp|P47986|UB5C_HUMAN
UBIQUITIN-CONJUGATING ENZYME E2-17 KDA 3 (UBIQUITIN-PROTEIN LIGASE)
(UBIQUITIN CARRIER PROTEIN) (E2(17)KB 3) >gi|1085588|pir||S53358
ubiquitin-conjugating enzyme E2.17kB - rat
>gi|595666|gb|AAA85100.1| (U13175) ubiquitin conjugating enzyme
[Rattus norvegicus] >gi|595670|gb|AAA85102.1| (U13177) ubiquitin
conjugating enzyme [Rattus norvegicus] >gi|1145691|gb|AAA91461.1|
(U39318) UbcH5C [Homo sapiens] >gi|6474928|dbj|BAA87330.1|
(AB006852) phosphoarginine phosphatase [Rattus norvegicus]
>gi|7012908|gb|AAF35234.1| (AF224669) ubiquitin-conjugating enzyme
E2D 3 [Homo sapiens]
Length = 147
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 33/80 (41%), Positives = 43/80 (53%), Frame = +2
Query: 83 LLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTK 262
L +P SA P +M + I+GP S Y+GGV L + P YP PK F T+
Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 72
Query: 263 IYHPXIDKLGXICLDXLKDK 322
IYHP I+ G ICLD L+ +
Sbjct: 73 IYHPNINSNGSICLDILRSQ 92
>gi|4507775 ref|NP_003330.1| ubiquitin-conjugating enzyme E2D 2 (homologous to
yeast UBC4/5); UbcH5B [Homo sapiens] >gi|9910600 ref|NP_064296.1|
ubiquitin conjugating enzyme 2e [Mus musculus]
>gi|1717849|sp|P51669|UB5B_HUMAN UBIQUITIN-CONJUGATING ENZYME E2-17
KDA 2 (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
(E2(17)KB 2) >gi|1085589|pir||S53359 ubiquitin conjugating enzyme
(E217kB) - rat >gi|595668|gb|AAA85101.1| (U13176) ubiquitin
conjugating enzyme [Rattus norvegicus] >gi|1145689|gb|AAA91460.1|
(U39317) UbcH5B [Homo sapiens] >gi|1480742|gb|AAB05772.1| (U62483)
ubiquitin conjugating enzyme [Mus musculus]
Length = 147
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 33/80 (41%), Positives = 43/80 (53%), Frame = +2
Query: 83 LLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTK 262
L +P SA P +M + I+GP S Y+GGV L + P YP PK F T+
Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 72
Query: 263 IYHPXIDKLGXICLDXLKDK 322
IYHP I+ G ICLD L+ +
Sbjct: 73 IYHPNINSNGSICLDILRSQ 92
>gi|2136339|pir||I59365 ubiquitin conjugating enzyme - human
>gi|765056|gb|AAC41750.1| (L40146) ubiquitin conjugating enzyme
[Homo sapiens] >gi|1096569|prf||2111484A ubiquitin-conjugating
enzyme [Homo sapiens]
Length = 147
Frame 2 hits (HSPs): ___________________________
Annotated Domains: ______
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 33/80 (41%), Positives = 43/80 (53%), Frame = +2
Query: 83 LLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTK 262
L +P SA P +M + I+GP S Y+GGV L + P YP PK F T+
Sbjct: 13 LARDPPAQCSAGPVGDDMFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTR 72
Query: 263 IYHPXIDKLGXICLDXLKDK 322
IYHP I+ G ICLD L+ +
Sbjct: 73 IYHPNINSNGSICLDILRSQ 92
>gi|2501435|sp|O00103|UBCD_SCHPO UBIQUITIN-CONJUGATING ENZYME E2-20 KDA
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|7493564|pir||T40902 ubiquitin conjugating enzyme - fission
yeast (Schizosaccharomyces pombe) >gi|2190255|dbj|BAA20375.1|
(D85545) UcbP4 [Schizosaccharomyces pombe]
>gi|4469325|emb|CAB38416.1| (AL034564) ubiquitin conjugating enzyme
[Schizosaccharomyces pombe]
Length = 176
Frame 2 hits (HSPs): _______________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | 176
0 50 100 150
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 70..117
Entrez binding site: UBIQUITIN (BY SIMILARITY). 113
PFAM UQ_con: Ubiquitin-conjugating enzyme 16..172
PRODOM PD159743: UBCD_SCHPO 1..25
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 27..163
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 102..116
__________________
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 33/81 (40%), Positives = 46/81 (56%), Frame = +2
Query: 83 LLXEPAPGISASP-SEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLT 259
L+ PGISA P S+ N+ + + I GP+ + YEG K+ + P YP P F +
Sbjct: 40 LMMSNTPGISAFPDSDSNLLHWAGTITGPSDTYYEGLKFKISMSFPANYPYSPPTIIFTS 99
Query: 260 KIYHPXIDKLGXICLDXLKDK 322
++HP +D G ICLD LKDK
Sbjct: 100 PMWHPNVDMSGNICLDILKDK 120
>gi|2668744|gb|AAB88617.1| (AF034946) ubiquitin conjugating enzyme [Zea mays]
Length = 148
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 33/89 (37%), Positives = 48/89 (53%), Frame = +2
Query: 56 RXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXG 235
+ I+ + L +P SA P+ +M + I+GP S Y GGV + + P YP
Sbjct: 4 KRILKELKDLQKDPPTSCSAGPAGEDMFHWQATIMGPPDSPYAGGVFLVNIHFPPDYPFK 63
Query: 236 APKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK F TK++HP I+ G ICLD LK++
Sbjct: 64 PPKVSFKTKVFHPNINSNGSICLDILKEQ 92
>gi|3323498|gb|AAC39499.1| (AF030296) ubiquitin conjugating enzyme UBC1
[Glomerella cingulata]
Length = 147
Frame 2 hits (HSPs): __________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 32/77 (41%), Positives = 42/77 (54%), Frame = +2
Query: 92 EPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTKIYH 271
+P SA P ++ + I+GP S Y GGV L + P YP PK F T+IYH
Sbjct: 16 DPPSSCSAGPVGEDLFHWQATIMGPGDSPYSGGVFFLAIHFPTDYPFKPPKVNFTTRIYH 75
Query: 272 PXIDKLGXICLDXLKDK 322
P I+ G ICLD L+D+
Sbjct: 76 PNINSNGSICLDILRDQ 92
>gi|9989034|gb|AAG10797.1|AC022284_2 (AC022284) Ubiquitin-conjugating enzyme
[Leishmania major] >gi|11022580|emb|CAC14238.1| (AL445678) probable
ubiquitin-conjugating enzyme e2-17 kda [Leishmania major]
Length = 148
Frame 2 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 166 (58.4 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 37/90 (41%), Positives = 47/90 (52%), Frame = +2
Query: 56 RXIIXXTQRLLXEPAPGISASP-SEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPX 232
R I + L +P S P SE ++ I+GP S Y GG+ L + P YP
Sbjct: 4 RRIQKELKDLEKDPPANTSGGPVSESDLFNWKATIIGPEDSPYAGGLFFLNIHFPSDYPF 63
Query: 233 GAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK +F TKIYHP I+ G ICLD LKD+
Sbjct: 64 KPPKLQFTTKIYHPNINNNGGICLDILKDQ 93
>gi|456568|gb|AAA64427.1| (L29077) ubiquitin conjugating enzyme [Pisum sativum]
Length = 148
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 165 (58.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 33/89 (37%), Positives = 47/89 (52%), Frame = +2
Query: 56 RXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXG 235
+ I+ + L +P SA P +M + I+GP S Y GGV + + P YP
Sbjct: 4 KRILKELKDLQKDPPTSCSAGPVAEDMFHWQATIVGPADSPYAGGVFLVTIHFPPDYPFK 63
Query: 236 APKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK F TK++HP I+ G ICLD LK++
Sbjct: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQ 92
>gi|4507773 ref|NP_003329.1| ubiquitin-conjugating enzyme E2D 1 (homologous to
yeast UBC4/5); UbcH5A [Homo sapiens]
>gi|1717848|sp|P51668|UB5A_HUMAN UBIQUITIN-CONJUGATING ENZYME E2-17
KDA 1 (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
(E2(17)KB 1) >gi|2136338|pir||I39202 ubiquitin conjugating enzyme -
human >gi|460810|emb|CAA55019.1| (X78140) ubiquitin conjugating
enzyme [Homo sapiens]
Length = 147
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 165 (58.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 33/80 (41%), Positives = 43/80 (53%), Frame = +2
Query: 83 LLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTK 262
L +P SA P ++ + I+GP S Y+GGV L + P YP PK F TK
Sbjct: 13 LQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTK 72
Query: 263 IYHPXIDKLGXICLDXLKDK 322
IYHP I+ G ICLD L+ +
Sbjct: 73 IYHPNINSNGSICLDILRSQ 92
>gi|1174848|sp|P43102|UBC4_CANAL UBIQUITIN-CONJUGATING ENZYME E2-16 KD
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
Length = 147
Frame 2 hits (HSPs): __________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 42..89
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..144
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 4..143
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 165 (58.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 33/77 (42%), Positives = 41/77 (53%), Frame = +2
Query: 92 EPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTKIYH 271
+P SA P ++ + I+GP S Y GGV L + P YP PK TKIYH
Sbjct: 16 DPPSSCSAGPVGDDLYHWQASIMGPPDSPYAGGVFFLSIHFPTDYPLKPPKIALTTKIYH 75
Query: 272 PXIDKLGXICLDXLKDK 322
P I+ G ICLD LKD+
Sbjct: 76 PNINSNGNICLDILKDQ 92
>gi|8393719 ref|NP_057067.1| ubiquitin-conjugating enzyme HBUCE1 [Homo sapiens]
>gi|4868140|gb|AAD31180.1|AF125044_1 (AF125044)
ubiquitin-conjugating enzyme HBUCE1 [Homo sapiens]
>gi|7022710|dbj|BAA91697.1| (AK001446) unnamed protein product
[Homo sapiens]
Length = 147
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
Plus Strand HSPs:
Score = 165 (58.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 33/80 (41%), Positives = 43/80 (53%), Frame = +2
Query: 83 LLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTK 262
L +P SA P ++ + I+GP S Y+GGV L + P YP PK F TK
Sbjct: 13 LQRDPPAQCSAGPVGDDLFHWQATIMGPNDSPYQGGVFFLTIHFPTDYPFKPPKVAFTTK 72
Query: 263 IYHPXIDKLGXICLDXLKDK 322
IYHP I+ G ICLD L+ +
Sbjct: 73 IYHPNINSNGSICLDILRSQ 92
>gi|12735788 ref|XP_005934.2| ubiquitin-conjugating enzyme E2D 1 (homologous to
yeast UBC4/5) [Homo sapiens]
Length = 141
Frame 2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | 141
0 50 100
Plus Strand HSPs:
Score = 165 (58.1 bits), Expect = 2.3e-11, P = 2.3e-11
Identities = 33/80 (41%), Positives = 43/80 (53%), Frame = +2
Query: 83 LLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTK 262
L +P SA P ++ + I+GP S Y+GGV L + P YP PK F TK
Sbjct: 7 LQRDPPAHCSAGPVGDDLFHWQATIMGPPDSAYQGGVFFLTVHFPTDYPFKPPKIAFTTK 66
Query: 263 IYHPXIDKLGXICLDXLKDK 322
IYHP I+ G ICLD L+ +
Sbjct: 67 IYHPNINSNGSICLDILRSQ 86
>gi|464979|sp|P35129|UBC2_CAEEL UBIQUITIN-CONJUGATING ENZYME E2-17 KDA
(UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|7506114|pir||T23820 hypothetical protein M7.1 - Caenorhabditis
elegans >gi|3878673|emb|CAA92745.1| (Z68337) contains similarity to
Pfam domain: PF00179 (Ubiquitin-conjugating enzyme), Score=320.8,
E-value=5.2e-93, N=1~cDNA EST yk119b8.5 comes from this gene~cDNA
EST CEMSE48F comes from this gene~cDNA EST EMBL:T00827 comes from
this gene~cDNA EST EMB> >gi|7327273|gb|AAB25489.2| (S56051)
ubiquitin-conjugating enzyme [Caenorhabditis elegans]
Length = 147
Frame 2 hits (HSPs): ____________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 147
0 50 100
__________________
Annotated Domains:
BLOCKS BL00183: Ubiquitin-conjugating enzymes p 42..89
Entrez binding site: UBIQUITIN (BY SIMILARITY). 85
PFAM UQ_con: Ubiquitin-conjugating enzyme 1..144
PRODOM PD000461: UBC2(10) UBC4(7) UBC7(7) 2..143
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 164 (57.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 33/82 (40%), Positives = 45/82 (54%), Frame = +2
Query: 77 QRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFL 256
Q L +P SA P ++ + I+GP +S Y+GGV L + P YP PK F
Sbjct: 11 QDLGRDPPAQCSAGPVGDDLFHWQATIMGPPESPYQGGVFFLTIHFPTDYPFKPPKVAFT 70
Query: 257 TKIYHPXIDKLGXICLDXLKDK 322
T+IYHP I+ G ICLD L+ +
Sbjct: 71 TRIYHPNINSNGSICLDILRSQ 92
>gi|4507779 ref|NP_003332.1| ubiquitin-conjugating enzyme E2E 1 (homologous to
yeast UBC4/5); UbcH6 [Homo sapiens] >gi|12729179 ref|XP_002869.2|
ubiquitin-conjugating enzyme E2E 1 (homologous to yeast UBC4/5)
[Homo sapiens] >gi|1717857|sp|P51965|UBC6_HUMAN
UBIQUITIN-CONJUGATING ENZYME E2-21 KDA UBCH6 (UBIQUITIN-PROTEIN
LIGASE) (UBIQUITIN CARRIER PROTEIN) >gi|1064914|emb|CAA63539.1|
(X92963) ubiquitin-conjugating enzyme UbcH6 [Homo sapiens]
Length = 193
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
Plus Strand HSPs:
Score = 164 (57.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 39/101 (38%), Positives = 49/101 (48%), Frame = +2
Query: 17 LQSNSTMANSXLPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVX 196
+ NS + ++ R I + +P P SA P N+ ILGP S YEGGV
Sbjct: 38 MSKNSKLLSTSAKR-IQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVF 96
Query: 197 KLXLFLPXXYPXGAPKXRFLTKIYHPXIDKLGXICLDXLKD 319
L + YP PK F T+IYH I+ G ICLD LKD
Sbjct: 97 FLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKD 137
>gi|6678479 ref|NP_033481.1| ubiquitin-conjugating enzyme 5 [Mus musculus]
>gi|1717858|sp|P52482|UBC6_MOUSE UBIQUITIN-CONJUGATING ENZYME E2-21
KD UBCH6 (UBIQUITIN-PROTEIN LIGASE) (UBIQUITIN CARRIER PROTEIN)
>gi|1072388|emb|CAA63353.1| (X92665) ubiquitin-conjugating enzyme
UbcM3 [Mus musculus]
Length = 193
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
Plus Strand HSPs:
Score = 164 (57.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 39/101 (38%), Positives = 49/101 (48%), Frame = +2
Query: 17 LQSNSTMANSXLPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVX 196
+ NS + ++ R I + +P P SA P N+ ILGP S YEGGV
Sbjct: 38 MSKNSKLLSTSAKR-IQKELADITLDPPPNCSAGPKGDNIYEWRSTILGPPGSVYEGGVF 96
Query: 197 KLXLFLPXXYPXGAPKXRFLTKIYHPXIDKLGXICLDXLKD 319
L + YP PK F T+IYH I+ G ICLD LKD
Sbjct: 97 FLDITFTPEYPFKPPKVTFRTRIYHCNINSQGVICLDILKD 137
>gi|12311787|emb|CAC24487.1| (AJ298327) putative ubiquitin-conjugating enzyme
[Platichthys flesus]
Length = 98
Frame 2 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | | | 98
0 20 40 60 80
Plus Strand HSPs:
Score = 164 (57.7 bits), Expect = 3.0e-11, P = 3.0e-11
Identities = 34/80 (42%), Positives = 41/80 (51%), Frame = +2
Query: 83 LLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTK 262
L +P SA P +M + I GP S Y GGV L + P YP PK F TK
Sbjct: 6 LQRDPPASCSAGPVGEDMFHWQATITGPNDSPYHGGVFFLSVHFPTDYPFKPPKISFTTK 65
Query: 263 IYHPXIDKLGXICLDXLKDK 322
IYHP I+ G ICLD L+ +
Sbjct: 66 IYHPNINSNGSICLDILRSQ 85
>gi|2130087|pir||S61417 ubiquitin--protein ligase (EC 6.3.2.19) - rice
Length = 148
Frame 2 hits (HSPs): __________________________
Annotated Domains: ______
__________________________________________________
Database sequence: | | | | 148
0 50 100
__________________
Annotated Domains:
PROSITE UBIQUITIN_CONJUGAT: Ubiquitin-conjugatin 74..88
__________________
Plus Strand HSPs:
Score = 163 (57.4 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 31/77 (40%), Positives = 42/77 (54%), Frame = +2
Query: 92 EPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXGAPKXRFLTKIYH 271
+P SA P +M + I+GP S Y GGV + + P YP PK F TK++H
Sbjct: 16 DPPTSCSAGPVAEDMFHWQATIMGPPDSPYAGGVFLVSIHFPPDYPFNRPKVAFKTKVFH 75
Query: 272 PXIDKLGXICLDXLKDK 322
P I+ G ICLD LK++
Sbjct: 76 PNINSNGSICLDILKEQ 92
>gi|5762457|gb|AAD51109.1|AF176040_1 (AF176040) ubiquitin-conjugating enzyme
UBC2 [Mesembryanthemum crystallinum]
Length = 148
Frame 2 hits (HSPs): ______________________________
__________________________________________________
Database sequence: | | | | 148
0 50 100
Plus Strand HSPs:
Score = 163 (57.4 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 32/89 (35%), Positives = 48/89 (53%), Frame = +2
Query: 56 RXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPXXYPXG 235
+ I+ + L +P SA P +M + I+GP+ S Y GG+ + + P YP
Sbjct: 4 KRILKELKDLQKDPPTSCSAGPVGEDMFHWQATIMGPSDSPYAGGLFLVTIHFPPDYPFK 63
Query: 236 APKXRFLTKIYHPXIDKLGXICLDXLKDK 322
PK F TK++HP I+ G ICLD LK++
Sbjct: 64 PPKVAFRTKVFHPNINSNGSICLDILKEQ 92
>gi|7294569|gb|AAF49909.1| (AE003541) CG10682 gene product [Drosophila
melanogaster]
Length = 178
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | | 178
0 50 100 150
Plus Strand HSPs:
Score = 163 (57.4 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 35/94 (37%), Positives = 45/94 (47%), Frame = +2
Query: 41 NSXLPRXIIXXTQRLLXEPAPGISASPSEXNMRYXSXXILGPTQSXYEGGVXKLXLFLPX 220
N + + + L+ GISA P N+ I GP + Y G +L L P
Sbjct: 30 NHAVSKRLHKELMNLMMANERGISAFPDGENIFKWVGTIAGPRNTVYSGQTYRLSLDFPN 89
Query: 221 XYPXGAPKXRFLTKIYHPXIDKLGXICLDXLKDK 322
YP AP +FLT +HP +D G ICLD LKDK
Sbjct: 90 SYPYAAPVVKFLTSCFHPNVDLQGAICLDILKDK 123
WARNING: HSPs involving 258 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.73
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.335 0.144 0.486
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.319 0.139 0.408
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.368 0.163 0.663
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.346 0.154 0.554
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.335 0.149 0.485
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.355 0.158 0.567
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 106 84 10. 61 3 12 22 0.12 31
28 0.096 33
+2 0 107 88 10. 63 3 12 22 0.12 31
28 0.11 33
+1 0 107 86 10. 62 3 12 22 0.12 31
28 0.10 33
-1 0 107 84 10. 61 3 12 22 0.12 31
28 0.096 33
-2 0 107 91 10. 64 3 12 22 0.094 32
28 0.11 33
-3 0 106 88 10. 63 3 12 22 0.12 31
28 0.11 33
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 308
No. of states in DFA: 584 (58 KB)
Total size of DFA: 125 KB (128 KB)
Time to generate neighborhood: 0.00u 0.01s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 77.87u 0.99s 78.86t Elapsed: 00:00:40
Total cpu time: 77.89u 1.04s 78.93t Elapsed: 00:00:40
Start: Wed Jan 16 20:51:04 2002 End: Wed Jan 16 20:51:44 2002
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000