Handout     NAR 2006 Paper     NAR 2002 Paper     FAQ     MIAME     Email GEO  
   NCBI > GEO > Accession Display Not logged in | Login
GEO help: Mouse over screen elements for information.
Scope:    Format:    Amount:   GEO accession:    Go
Sample GSM299202 Query DataSets for GSM299202
Status Public on Sep 15, 2008
Title NormOvary7 (single-channel-Median-Norm-Intensity)
Sample type RNA
 
Source Name normal tissue
Organism(s) Homo sapiens
Characteristics none
Extracted molecule total RNA
Extraction protocol Trizol
Label Cy3 or Cy5
Label protocol Agilent lowRNA input labeling
 
Hybridization protocol Agilent In-situ hybridization
Scan protocol Agilent scanner.
Description Pancreatic Tumor samples with mix of human normals arrayed on Agilent oligo (v1:18K probes&v2:22k probes)platform, single channel extracted median standardized, control removes,common arrays combined to reduced number (~17l)
Data processing The data were obtained with the Agilent Feature Extration Algorithm/Software v5.x,v6.x,v7.x,v8.x,v9.x. The raw data was standardized by each chip median value to cross compare arrays. Common probes taken from tow versions (Agilent human v1&v2) chips, repeating Q/Cl probes replaced by median values other control probes removed.
 
Submission date Jun 20, 2008
Contact name Yoga Balagurunathan
E-mail(s) yoga@tgen.org
Organization name TGEN
Street address 445 N. Fifth street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL6977
Series (1)
GSE11838 Pancreatic Tumor vs Various Tissue Normals

Data table header descriptions
ID_REF
VALUE Normalized signal intensity [scale based (median) normalization]

Data table
ID_REF VALUE
A_23_P146576 0.335202
A_23_P125016 0.233184
A_23_P28555 1.095291
A_23_P23227 1.625561
A_23_P137543 0.924888
A_23_P27247 0.043722
A_23_P258433 0.033072
A_23_P28649 19.394619
A_23_P96529 1.457399
A_23_P2322 0.090583
A_23_P203419 1.782511
A_23_P122674 0.405269
A_23_P250800 0.255045
A_23_P23611 5.504484
A_23_P68884 2.197309
A_23_P111402 0.335202
A_23_P136095 0.219731
A_23_P81867 15.919283
A_23_P165457 0.54148
A_23_P72372 0.262332

Total number of rows: 17084

Table truncated, full table size 357 Kbytes.




Supplementary data files not provided
Raw data is available on Series record
Processed data included within Sample table

| NLM | NIH | GEO Help | Disclaimer | Section 508 |
NCBI Home NCBI Search NCBI SiteMap