BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.

BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.

BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract

Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract

processing output:
cycle 1
cycle 2
cycle 3
cycle 4
Repeat sequence:
   SW  perc perc perc  query                position in query    matching repeat        position in  repeat
score  div. del. ins.  sequence             begin  end (left)    repeat   class/family  begin  end (left)  ID

  531   0.0  0.0  0.0  'E07E05_I05_09.ab1'    188  246   (27) +  (A)n     Simple_repeat     1   59    (0)      

Alignments:
531  0.00  0.00  0.00  'E07E05_I05_09.ab1'  188  246  (27)  (A)n#Simple_repeat  1  59  (121)  5

  'E07E05_I05_09.    188 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 237    
                                                                           
  (A)n#Simple_rep      1 AAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAA 50

  'E07E05_I05_09.    238 AAAAAAAAA 246    
                                  
  (A)n#Simple_rep     51 AAAAAAAAA 59

Transitions / transversions = 1.00 (0 / 0)
Gap_init rate = 0.00 (0 / 59), avg. gap size = 0.00 (0 / 0)  

Masked Sequence:
>'E07E05_I05_09.ab1'
ATTACGGCCGGGNATTGGTACTATGGTTGGTGCCTTGTTGGTTGGTGCAA
CTAACTGGCAAGGGTTGTTCATTGTTTTCTTCTATTCCTTTCCCTCGTTT
TCCGATTGTTACAATGACAATAATTTAATGGTTATTATCAGTCTTGAACA
AAGAAATGCTGATTGTGAAGTATAATAATAATATATGNNNNNNNNNNNNN
NNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNNTTTN
NGGNCCCCCCCCCCCCCCCCCNT

Summary:
==================================================
file name: /repeatmasker/tmp/RM2seq
sequences:            1
total length:       273 bp
GC level:         32.09 %
bases masked:        59 bp ( 21.61 %)
==================================================
               number of      length   percentage
               elements*    occupied  of sequence
--------------------------------------------------
SINEs:                0            0 bp     0.00 %
      ALUs            0            0 bp     0.00 %
      MIRs            0            0 bp     0.00 %

LINEs:                0            0 bp     0.00 %
      LINE1           0            0 bp     0.00 %
      LINE2           0            0 bp     0.00 %
      L3/CR1          0            0 bp     0.00 %

LTR elements:         0            0 bp     0.00 %
      MaLRs           0            0 bp     0.00 %
      ERVL            0            0 bp     0.00 %
      ERV_classI      0            0 bp     0.00 %
      ERV_classII     0            0 bp     0.00 %

DNA elements:         0            0 bp     0.00 %
      MER1_type       0            0 bp     0.00 %
      MER2_type       0            0 bp     0.00 %

Unclassified:         0            0 bp     0.00 %

Total interspersed repeats:        0 bp     0.00 %


Small RNA:            0            0 bp     0.00 %

Satellites:           0            0 bp     0.00 %
Simple repeats:       1           59 bp    21.61 %
Low complexity:       0            0 bp     0.00 %
==================================================

* most repeats fragmented by insertions or deletions
  have been counted as one element

The sequence(s) were assumed to be of primate origin.
RepeatMasker version 07/16/2000               default
ProcessRepeats version 07/16/2000
Repbase version 03/31/2000


Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  'E07E05_I05_09.ab1'
        (273 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 12 Sequences     : less than 12 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 3194 698 |==========================================================
   6310 2496 499 |=========================================
   3980 1997 472 |=======================================
   2510 1525 363 |==============================
   1580 1162 263 |=====================
   1000  899 245 |====================
    631  654 179 |==============
    398  475 138 |===========
    251  337  99 |========
    158  238  52 |====
    100  186  87 |=======
   63.1   99  32 |==
   39.8   67  20 |=
   25.1   47  18 |=
   15.8   29  10 |:
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 19  <<<<<<<<<<<<<<<<<
   10.0   19   6 |:
   6.31   13   6 |:
   3.98    7   1 |:
   2.51    6   4 |:
   1.58    2   1 |:
   1.00    1   1 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|1498665|gb|AAB48958.1|(U63746) zinc knuckle region... -3    67  0.56      1
gi|1498667|gb|AAB48959.1|(U63747) zinc knuckle region... -3    65  0.77      1
gi|2353775|gb|AAB69127.1|(AF016259) KMT1 [Pasteurella... +2    50  0.82      2
gi|7498208|pir||T20369hypothetical protein D2045.1 - ... +3    48  0.86      3
gi|1498669|gb|AAB48960.1|(U63748) zinc knuckle region... -3    64  0.88      1
gi|12669897|gb|AAG21336.2|AF273733_1(AF273733) hypoth... +3    51  0.90      2
gi|3213204|gb|AAC23449.1|(AF019569) calcineurin A [Xe... +2    48  0.93      2
gi|12382252|gb|AAG53084.1|AF268617_1(AF268617) POU 5 ... -3    48  0.98      2
gi|284227|pir||S26939Ig heavy chain V region (DP-79) ... +1    34  0.993     2
gi|11349248|pir||D83446hypothetical protein PA1591 [i... +2    48  0.994     2
gi|8394381ref|NP_059011.1| sodium-coupled ascorbic ac... +3    56  0.997     2
gi|6755542ref|NP_035527.1| solute carrier family 23, ... +3    56  0.997     2
gi|8895708|gb|AAF81071.1|AF225910_1(AF225910) DAZ-ass... +3    48  0.998     2
gi|7432307|pir||S77331NADH dehydrogenase (ubiquinone)... +2    49  0.998     2
gi|9506537ref|NP_061832.1| DAZ associated protein 1 [... +3    48  0.998     2
gi|11426269ref|XP_009249.1| DAZ associated protein 1 ... +3    48  0.998     2
gi|8928002|sp|Q9Z4S2|ARGC_THENEN-ACETYL-GAMMA-GLUTAMY... +2    51  0.998     2
gi|116288|sp|P07365|CHEW_ECOLICHEMOTAXIS PROTEIN CHEW... +2    60  0.9997    1
gi|12515951|gb|AAG56877.1|AE005411_1(AE005411) positi... +2    60  0.9997    1

Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.


 >gi|1498665|gb|AAB48958.1|  (U63746) zinc knuckle region [Drosophila simulans]
            Length = 138

Frame -3 hits (HSPs):   _____________________                             
                        __________________________________________________
Database sequence:     |                 |                 |              | 138
                       0                50               100

  Minus Strand HSPs:

 Score = 67 (23.6 bits), Expect = 0.83, P = 0.56
 Identities = 19/57 (33%), Positives = 26/57 (45%), Frame = -3

Query:   169 FTISISLFKTDNNH*IIVIVTIGKRGKGIEENNEQPLPVSCTNQQGTNHSTNX--RP 5
             F + I + K  ++  II +  IG +   IE  N    PV C   QG  H+ N   RP
Sbjct:     1 FEVEIVMAKDGSHDKIISLKQIGGQRVDIERKNRTREPVQCYRCQGFRHAKNSCMRP 57


 >gi|1498667|gb|AAB48959.1|  (U63747) zinc knuckle region [Drosophila simulans]
            Length = 141

Frame -3 hits (HSPs):   ____________________                              
                        __________________________________________________
Database sequence:     |                 |                 |              | 141
                       0                50               100

  Minus Strand HSPs:

 Score = 65 (22.9 bits), Expect = 1.5, P = 0.77
 Identities = 19/57 (33%), Positives = 25/57 (43%), Frame = -3

Query:   169 FTISISLFKTDNNH*IIVIVTIGKRGKGIEENNEQPLPVSCTNQQGTNHSTNX--RP 5
             F + I + K  ++  II    IG +   IE  N    PV C   QG  H+ N   RP
Sbjct:     1 FEVEIVMAKDGSHDKIISFKQIGGQRVDIERKNRTREPVQCYRCQGFRHAKNSCMRP 57


 >gi|2353775|gb|AAB69127.1|  (AF016259) KMT1 [Pasteurella multocida]
            Length = 259

Frame  3 hits (HSPs):                     ___                             
Frame  2 hits (HSPs):                                       ______        
                        __________________________________________________
Database sequence:     |         |         |        |         |         | | 259
                       0        50       100      150       200       250

  Plus Strand HSPs:

 Score = 50 (17.6 bits), Expect = 1.7, Sum P(2) = 0.82
 Identities = 12/32 (37%), Positives = 19/32 (59%), Frame = +2

Query:    65 LFIVFFYSFPSFSDCYNDNNLMVIISLEQRNA 160
             LFIV++     FS C   N L+V + ++Q+ A
Sbjct:   189 LFIVYWLPILVFSSC--SNGLIVSVQMKQKVA 218

 Score = 36 (12.7 bits), Expect = 1.7, Sum P(2) = 0.82
 Identities = 7/14 (50%), Positives = 9/14 (64%), Frame = +3

Query:     6 GRXLVLWLVPCWLV 47
             G  ++LWLV   LV
Sbjct:    96 GNGIILWLVVSGLV 109


 >gi|7498208|pir||T20369  hypothetical protein D2045.1 - Caenorhabditis elegans
            >gi|4008344|emb|CAA84697.1| (Z35639) cDNA EST CEMSD23F comes from
            this gene~cDNA EST CEESE24F comes from this gene~cDNA EST yk34e9.3
            comes from this gene~cDNA EST yk34e9.5 comes from this gene~cDNA
            EST yk35h2.5 comes from this gene~cDNA EST yk63e6.5 comes from this
            gene~cDNA EST >
            Length = 1026

Frame  3 hits (HSPs):                        _                          __
Frame  2 hits (HSPs):     __                                              
                        __________________________________________________
Database sequence:     |       |      |      |       |      |      |      | 1026
                       0     150    300    450     600    750    900

  Plus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 2.0, Sum P(3) = 0.86
 Identities = 7/7 (100%), Positives = 7/7 (100%), Frame = +3

Query:   252 GPPPPPP 272
             GPPPPPP
Sbjct:  1003 GPPPPPP 1009

 Score = 37 (13.0 bits), Expect = 2.0, Sum P(3) = 0.86
 Identities = 7/16 (43%), Positives = 8/16 (50%), Frame = +2

Query:    92 PSFSDCYNDNNLMVII 139
             P   DC  DN L + I
Sbjct:    62 PKLFDCSTDNLLFIYI 77

 Score = 31 (10.9 bits), Expect = 2.0, Sum P(3) = 0.86
 Identities = 6/12 (50%), Positives = 9/12 (75%), Frame = +3

Query:   150 KEMLIVKYNNNI 185
             K+ML  + NNN+
Sbjct:   432 KQMLDPRPNNNV 443


 >gi|1498669|gb|AAB48960.1|  (U63748) zinc knuckle region [Drosophila simulans]
            Length = 145

Frame -3 hits (HSPs):    ____________________                             
                        __________________________________________________
Database sequence:     |                |                 |               | 145
                       0               50               100

  Minus Strand HSPs:

 Score = 64 (22.5 bits), Expect = 2.1, P = 0.88
 Identities = 19/57 (33%), Positives = 25/57 (43%), Frame = -3

Query:   169 FTISISLFKTDNNH*IIVIVTIGKRGKGIEENNEQPLPVSCTNQQGTNHSTNX--RP 5
             F + I   K  ++  II +  IG +   IE  N    PV C   QG  H+ N   RP
Sbjct:     4 FEVEIVTAKDGSHDKIISLKQIGGQKVDIERKNRTREPVQCYRCQGFRHTKNSCMRP 60


 >gi|12669897|gb|AAG21336.2|AF273733_1  (AF273733) hypothetical esophageal gland
            cell secretory protein 6 [Heterodera glycines]
            Length = 244

Frame  3 hits (HSPs):                               _________             
Frame  2 hits (HSPs):                           ___                       
                        __________________________________________________
Database sequence:     |          |         |         |         |         | 244
                       0         50       100       150       200

  Plus Strand HSPs:

 Score = 51 (18.0 bits), Expect = 2.3, Sum P(2) = 0.90
 Identities = 12/41 (29%), Positives = 21/41 (51%), Frame = +3

Query:    66 CSLFSSIPFPRFPIVTMTII*WLLSV-LNKEMLIVKYNNNI 185
             C +    PFP   + T T   W+LS  L+  +++  ++N I
Sbjct:   141 CVVSGRSPFPTLGLETPTFFQWMLSNRLSAALMLFLFSNAI 181

 Score = 33 (11.6 bits), Expect = 2.3, Sum P(2) = 0.90
 Identities = 7/13 (53%), Positives = 9/13 (69%), Frame = +2

Query:     8 PGIGTMVGALLVG 46
             PGI   VGA ++G
Sbjct:   120 PGILRTVGAQVIG 132


 >gi|3213204|gb|AAC23449.1|  (AF019569) calcineurin A [Xenopus laevis]
            Length = 518

Frame  3 hits (HSPs):                                 __                  
Frame  2 hits (HSPs):                           ___                       
                        __________________________________________________
Database sequence:     |              |             |              |      | 518
                       0            150           300            450

  Plus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 2.7, Sum P(2) = 0.93
 Identities = 7/21 (33%), Positives = 14/21 (66%), Frame = +2

Query:    77 FFYSFPSFSDCYNDNNLMVII 139
             +FYS+P+  +    NNL+ ++
Sbjct:   258 YFYSYPAVCEFLQHNNLLSVL 278

 Score = 43 (15.1 bits), Expect = 2.7, Sum P(2) = 0.93
 Identities = 7/17 (41%), Positives = 11/17 (64%), Frame = +3

Query:   135 LSVLNKEMLIVKYNNNI 185
             L V N +  ++KY NN+
Sbjct:   312 LDVYNNKAAVLKYENNV 328


 >gi|12382252|gb|AAG53084.1|AF268617_1  (AF268617) POU 5 domain protein [Homo
            sapiens]
            Length = 186

Frame -3 hits (HSPs):       __                   _______                  
                        __________________________________________________
Database sequence:     |             |            |             |         | 186
                       0            50          100           150

  Minus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 4.1, Sum P(2) = 0.98
 Identities = 9/24 (37%), Positives = 13/24 (54%), Frame = -3

Query:   103 GKRGKGIEENNEQPLPVSCTNQQG 32
             G+ G G+E N++   P  CT   G
Sbjct:    97 GEAGVGVESNSDGASPEPCTVPSG 120

 Score = 36 (12.7 bits), Expect = 4.1, Sum P(2) = 0.98
 Identities = 6/7 (85%), Positives = 6/7 (85%), Frame = -3

Query:   271 GGGGGGP 251
             GGGG GP
Sbjct:    16 GGGGDGP 22


 >gi|284227|pir||S26939  Ig heavy chain V region (DP-79) - human (fragment)
            Length = 39

Frame  3 hits (HSPs):                      ____________________           
Frame  1 hits (HSPs):          _____________                              
                        __________________________________________________
Database sequence:     |                        |                         | 39
                       0                       20

  Plus Strand HSPs:

 Score = 34 (12.0 bits), Expect = 5.0, Sum P(2) = 0.99
 Identities = 4/10 (40%), Positives = 8/10 (80%), Frame = +1

Query:     1 ITAGXWYYGW 30
             I++  +Y+GW
Sbjct:     7 ISSSSYYWGW 16

 Score = 33 (11.6 bits), Expect = 5.0, Sum P(2) = 0.99
 Identities = 7/16 (43%), Positives = 8/16 (50%), Frame = +3

Query:    39 WLVQLTGKGCSLFSSI 86
             W+ Q  GKG     SI
Sbjct:    16 WIRQPPGKGLEWIGSI 31


 >gi|11349248|pir||D83446  hypothetical protein PA1591 [imported] - Pseudomonas
            aeruginosa (strain PAO1) >gi|9947555|gb|AAG04980.1|AE004587_4
            (AE004587) hypothetical protein [Pseudomonas aeruginosa]
            Length = 254

Frame  3 hits (HSPs):      ___                                            
Frame  2 hits (HSPs):                           ______                    
                        __________________________________________________
Database sequence:     |         |         |         |         |         || 254
                       0        50       100       150       200       250

  Plus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 5.2, Sum P(2) = 0.99
 Identities = 10/25 (40%), Positives = 14/25 (56%), Frame = +2

Query:    65 LFIVFFYSFPSFSDCYNDNNLMVII 139
             L +VF Y+F +FS C    N   I+
Sbjct:   127 LAVVFVYAFFTFSWCMRQYNFAAIL 151

 Score = 33 (11.6 bits), Expect = 5.2, Sum P(2) = 0.99
 Identities = 4/8 (50%), Positives = 6/8 (75%), Frame = +3

Query:    21 LWLVPCWL 44
             LW + CW+
Sbjct:    20 LWFLFCWV 27


 >gi|8394381  ref|NP_059011.1| sodium-coupled ascorbic acid transporter  1
            [Rattus norvegicus] >gi|4836172|gb|AAD30367.1|AF080452_1 (AF080452)
            sodium-coupled ascorbic acid transporter SVCT1 [Rattus norvegicus]
            Length = 604

Frame  3 hits (HSPs):                      ____      _                    
                        __________________________________________________
Database sequence:     |            |           |            |           || 604
                       0          150         300          450         600

  Plus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 5.8, Sum P(2) = 1.0
 Identities = 19/45 (42%), Positives = 23/45 (51%), Frame = +3

Query:     3 YGRXLVLWLVPCWLVQLTGKGCSLFSSIPFPRFPIVTMTII*WLL 137
             Y R L  +L+P   V   GKG +LF    F  FPIV   +  WLL
Sbjct:   234 YLRNLT-FLLP---VYRWGKGLTLFRIQIFKMFPIVLAIMTVWLL 274

 Score = 33 (11.6 bits), Expect = 5.8, Sum P(2) = 1.0
 Identities = 5/6 (83%), Positives = 5/6 (83%), Frame = +3

Query:   252 GPPPPP 269
             G PPPP
Sbjct:   354 GAPPPP 359


 >gi|6755542  ref|NP_035527.1| solute carrier family 23, (nucleobase
            transporters) member 2; solute carrier family 23, (nucleobase
            transporters) member 1; DNA segment, Chr 18, University of
            California at Los Angeles 2 [Mus musculus]
            >gi|3789787|gb|AAC78805.1| (AF058318) yolk sac permease-like
            molecule 3 [Mus musculus]
            Length = 605

Frame  3 hits (HSPs):                      ____      _                    
                        __________________________________________________
Database sequence:     |            |           |            |           || 605
                       0          150         300          450         600

  Plus Strand HSPs:

 Score = 56 (19.7 bits), Expect = 5.8, Sum P(2) = 1.0
 Identities = 19/45 (42%), Positives = 23/45 (51%), Frame = +3

Query:     3 YGRXLVLWLVPCWLVQLTGKGCSLFSSIPFPRFPIVTMTII*WLL 137
             Y R L  +L+P   V   GKG +LF    F  FPIV   +  WLL
Sbjct:   234 YLRNLT-FLLP---VYRWGKGLTLFRVQIFKMFPIVLAIMTVWLL 274

 Score = 33 (11.6 bits), Expect = 5.8, Sum P(2) = 1.0
 Identities = 5/6 (83%), Positives = 5/6 (83%), Frame = +3

Query:   252 GPPPPP 269
             G PPPP
Sbjct:   354 GAPPPP 359


 >gi|8895708|gb|AAF81071.1|AF225910_1  (AF225910) DAZ-associated protein 1 [Mus
            musculus]
            Length = 405

Frame  3 hits (HSPs):                                       _             
Frame  2 hits (HSPs):   _____                                             
                        __________________________________________________
Database sequence:     |                  |                 |             | 405
                       0                150               300

  Plus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 6.3, Sum P(2) = 1.0
 Identities = 7/7 (100%), Positives = 7/7 (100%), Frame = +3

Query:   252 GPPPPPP 272
             GPPPPPP
Sbjct:   294 GPPPPPP 300

 Score = 37 (13.0 bits), Expect = 6.3, Sum P(2) = 1.0
 Identities = 9/31 (29%), Positives = 13/31 (41%), Frame = +2

Query:    26 VGALLVGATNW---QGLFIVFFYSFPSFSDC 109
             +G L VG  +W   Q     +F  +    DC
Sbjct:     9 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDC 39


 >gi|7432307|pir||S77331  NADH dehydrogenase (ubiquinone) (EC 1.6.5.3) chain 4.1a
            - Synechocystis sp. (strain PCC 6803) >gi|1652513|dbj|BAA17434.1|
            (D90906) NADH dehydrogenase subunit 4 [Synechocystis sp.]
            Length = 502

Frame  3 hits (HSPs):                                          ____       
Frame  2 hits (HSPs):                                        ____         
                        __________________________________________________
Database sequence:     |              |              |              |     | 502
                       0            150            300            450

  Plus Strand HSPs:

 Score = 49 (17.2 bits), Expect = 6.4, Sum P(2) = 1.0
 Identities = 12/28 (42%), Positives = 15/28 (53%), Frame = +2

Query:    17 GTMVGALLVGATNWQGLFIVFFYSFPSF 100
             G M  A + G   +   FIVF  SFP+F
Sbjct:   378 GGMASAGIPGLVGFAAEFIVFQGSFPTF 405

 Score = 38 (13.4 bits), Expect = 6.4, Sum P(2) = 1.0
 Identities = 11/29 (37%), Positives = 14/29 (48%), Frame = +3

Query:    90 FPRFPIVTMTII*WLLSVLNKEMLIVKYN 176
             FP FPI T+  I  L S L     ++  N
Sbjct:   402 FPTFPIPTLLCI--LASGLTAVYFVILLN 428


 >gi|9506537  ref|NP_061832.1| DAZ associated protein 1 [Homo sapiens]
            >gi|8671754|gb|AAF78364.1|AF181719_1 (AF181719) DAZ associated
            protein 1 [Homo sapiens]
            Length = 407

Frame  3 hits (HSPs):                                       _             
Frame  2 hits (HSPs):   _____                                             
                        __________________________________________________
Database sequence:     |                  |                 |             | 407
                       0                150               300

  Plus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 6.4, Sum P(2) = 1.0
 Identities = 7/7 (100%), Positives = 7/7 (100%), Frame = +3

Query:   252 GPPPPPP 272
             GPPPPPP
Sbjct:   295 GPPPPPP 301

 Score = 37 (13.0 bits), Expect = 6.4, Sum P(2) = 1.0
 Identities = 9/31 (29%), Positives = 13/31 (41%), Frame = +2

Query:    26 VGALLVGATNW---QGLFIVFFYSFPSFSDC 109
             +G L VG  +W   Q     +F  +    DC
Sbjct:     9 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDC 39


 >gi|11426269  ref|XP_009249.1| DAZ associated protein 1 [Homo sapiens]
            Length = 407

Frame  3 hits (HSPs):                                       _             
Frame  2 hits (HSPs):   _____                                             
                        __________________________________________________
Database sequence:     |                  |                 |             | 407
                       0                150               300

  Plus Strand HSPs:

 Score = 48 (16.9 bits), Expect = 6.4, Sum P(2) = 1.0
 Identities = 7/7 (100%), Positives = 7/7 (100%), Frame = +3

Query:   252 GPPPPPP 272
             GPPPPPP
Sbjct:   295 GPPPPPP 301

 Score = 37 (13.0 bits), Expect = 6.4, Sum P(2) = 1.0
 Identities = 9/31 (29%), Positives = 13/31 (41%), Frame = +2

Query:    26 VGALLVGATNW---QGLFIVFFYSFPSFSDC 109
             +G L VG  +W   Q     +F  +    DC
Sbjct:     9 IGKLFVGGLDWSTTQETLRSYFSQYGEVVDC 39


 >gi|8928002|sp|Q9Z4S2|ARGC_THENE  N-ACETYL-GAMMA-GLUTAMYL-PHOSPHATE REDUCTASE
            (N-ACETYL-GLUTAMATE SEMIALDEHYDE DEHYDROGENASE) (NAGSA
            DEHYDROGENASE) >gi|4468762|emb|CAB38109.1| (AJ009897)
            N-acetyl-gamma-glutamyl-phosphate reductase [Thermotoga
            neapolitana]
            Length = 339

Frame  2 hits (HSPs):   ___                                     ____      
                        __________________________________________________
Database sequence:     |                     |                      |     | 339
                       0                   150                    300

  Plus Strand HSPs:

 Score = 51 (18.0 bits), Expect = 6.5, Sum P(2) = 1.0
 Identities = 9/22 (40%), Positives = 14/22 (63%), Frame = +2

Query:    89 FPSFSDCYNDNNLMVIISLEQR 154
             FPS   CY  N++ + + LE+R
Sbjct:   274 FPSTKWCYGSNHVFIGMQLEER 295

 Score = 32 (11.3 bits), Expect = 6.5, Sum P(2) = 1.0
 Identities = 6/15 (40%), Positives = 10/15 (66%), Frame = +2

Query:    23 MVGALLVGATNWQGL 67
             M+   +VGAT + G+
Sbjct:     1 MIRVGIVGATGYTGI 15


 >gi|116288|sp|P07365|CHEW_ECOLI  CHEMOTAXIS PROTEIN CHEW >gi|72605|pir||QRECCW
            purine binding chemotaxis protein cheW - Escherichia coli
            >gi|145520|gb|AAA23565.1| (M13463) cheW peptide [Escherichia coli]
            >gi|1736540|dbj|BAA15703.1| (D90830) Chemotaxis protein CheW
            [Escherichia coli] >gi|1736546|dbj|BAA15708.1| (D90831) Chemotaxis
            protein CheW [Escherichia coli] >gi|1788196|gb|AAC74957.1|
            (AE000282) positive regulator of CheA protein activity [Escherichia
            coli K12]
            Length = 167

Frame  2 hits (HSPs):                  ______________                     
Annotated Domains:          ____________________________________________  
                        __________________________________________________
Database sequence:     |              |              |              |     | 167
                       0             50            100            150
__________________

Annotated Domains:
   DOMO                 DM01794: CHEMOTAXISCHEWPROTEIN           22..158
   Entrez               Domain: PURINE NUCLEOTIDE BINDING (BY SI 128..160
   PFAM                 CheW: CheW-like domain                   16..155
   PRODOM               PD149741: CHEW(7)                        16..56
   PRODOM               PD002343: CHEW(9)                        58..155
   PROSITE              LEUCINE_ZIPPER: Leucine zipper pattern.  137..158
__________________


  Plus Strand HSPs:

 Score = 60 (21.1 bits), Expect = 8.2, P = 1.0
 Identities = 14/44 (31%), Positives = 24/44 (54%), Frame = +2

Query:    32 ALLVGATNWQGLFIVFFYSFPSFSDC---YNDNNLMVIISLEQR 154
             A + G TN +G+ +        FS     YNDN ++++++L QR
Sbjct:    53 AFIKGVTNLRGVIVPIVDLRIKFSQVDVDYNDNTVVIVLNLGQR 96


 >gi|12515951|gb|AAG56877.1|AE005411_1  (AE005411) positive regulator of CheA
            protein activity [Escherichia coli O157:H7]
            Length = 167

Frame  2 hits (HSPs):                  ______________                     
                        __________________________________________________
Database sequence:     |              |              |              |     | 167
                       0             50            100            150

  Plus Strand HSPs:

 Score = 60 (21.1 bits), Expect = 8.2, P = 1.0
 Identities = 14/44 (31%), Positives = 24/44 (54%), Frame = +2

Query:    32 ALLVGATNWQGLFIVFFYSFPSFSDC---YNDNNLMVIISLEQR 154
             A + G TN +G+ +        FS     YNDN ++++++L QR
Sbjct:    53 AFIKGVTNLRGVIVPIVDLRIKFSQVDVDYNDNTVVIVLNLGQR 96


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.90

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.318   0.135   0.401    0.334   0.152   0.549  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.347   0.159   0.574  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.372   0.174   0.785  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.330   0.146   0.458  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.369   0.170   0.668  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.331   0.151   0.478  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0       90        67       10.  58 3  12 22  0.12    30
                                                    27  0.10    31
   +2      0       90        67       10.  58 3  12 22  0.12    30
                                                    27  0.10    31
   +1      0       91        67       10.  58 3  12 22  0.12    30
                                                    27  0.10    31
   -1      0       91        67       10.  58 3  12 22  0.12    30
                                                    27  0.10    31
   -2      0       90        65       10.  58 3  12 22  0.11    30
                                                    27  0.092   31
   -3      0       90        68       10.  58 3  12 22  0.12    30
                                                    27  0.10    31


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  19
  No. of states in DFA:  564 (56 KB)
  Total size of DFA:  121 KB (128 KB)
  Time to generate neighborhood:  0.00u 0.01s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  86.45u 0.93s 87.38t  Elapsed: 00:00:37
  Total cpu time:  86.46u 0.97s 87.43t  Elapsed: 00:00:37
  Start:  Fri Jan 18 17:40:17 2002   End:  Fri Jan 18 17:40:54 2002


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000