R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|320932|pir||A44971 hypothetical protein 1 - Plasmodium brasilianum
Length = 96
Frame -2 hits (HSPs): ______
Frame -3 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 96
0 20 40 60 80
Minus Strand HSPs:
Score = 68 (23.9 bits), Expect = 0.0053, Sum P(2) = 0.0052
Identities = 14/33 (42%), Positives = 17/33 (51%), Frame = -3
Query: 235 HTYISYIYIHLFHLIHVYISYIYNHTEHIK*KH 137
H+Y SY HL+H H Y SY H+ H H
Sbjct: 32 HSYHSYHSYHLYHSYHSYHSYHSYHSYHSHHSH 64
Score = 67 (23.6 bits), Expect = 0.019, Sum P(2) = 0.019
Identities = 13/28 (46%), Positives = 16/28 (57%), Frame = -3
Query: 235 HTYISYIYIHLFHLIHVYISYIYNHTEH 152
H+Y SY H +HL H Y SY H+ H
Sbjct: 29 HSYHSYHSYHSYHLYHSYHSYHSYHSYH 56
Score = 65 (22.9 bits), Expect = 0.061, Sum P(2) = 0.059
Identities = 13/33 (39%), Positives = 16/33 (48%), Frame = -3
Query: 235 HTYISYIYIHLFHLIHVYISYIYNHTEHIK*KH 137
H+Y SY H +H H Y SY H+ H H
Sbjct: 35 HSYHSYHLYHSYHSYHSYHSYHSYHSHHSHHSH 67
Score = 62 (21.8 bits), Expect = 0.33, Sum P(2) = 0.28
Identities = 12/28 (42%), Positives = 15/28 (53%), Frame = -3
Query: 235 HTYISYIYIHLFHLIHVYISYIYNHTEH 152
H Y SY H +H H+Y SY H+ H
Sbjct: 26 HPYHSYHSYHSYHSYHLYHSYHSYHSYH 53
Score = 61 (21.5 bits), Expect = 0.60, Sum P(2) = 0.45
Identities = 12/33 (36%), Positives = 16/33 (48%), Frame = -3
Query: 235 HTYISYIYIHLFHLIHVYISYIYNHTEHIK*KH 137
H+Y Y H +H H Y SY +H+ H H
Sbjct: 38 HSYHLYHSYHSYHSYHSYHSYHSHHSHHSHHSH 70
Score = 60 (21.1 bits), Expect = 0.89, Sum P(2) = 0.59
Identities = 12/33 (36%), Positives = 16/33 (48%), Frame = -3
Query: 235 HTYISYIYIHLFHLIHVYISYIYNHTEHIK*KH 137
H Y SY H +H H Y S+ +H+ H H
Sbjct: 41 HLYHSYHSYHSYHSYHSYHSHHSHHSHHSHHSH 73
Score = 42 (14.8 bits), Expect = 0.0053, Sum P(2) = 0.0052
Identities = 9/12 (75%), Positives = 9/12 (75%), Frame = -2
Query: 371 LTHFSQIFKFIF 336
L HFS IF FIF
Sbjct: 5 LAHFSCIFIFIF 16
>gi|862343|gb|AAA68426.1| (L10908) Gcap1 gene product [Mus musculus]
>gi|1092097|prf||2022314A granule cell marker protein [Mus
musculus] >gi|1092098|prf||2022315A granule cell marker protein
[Mus musculus]
Length = 85
Frame 3 hits (HSPs): _____________________________________
Frame -3 hits (HSPs): _______________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
Plus Strand HSPs:
Score = 62 (21.8 bits), Expect = 3.9, P = 0.98
Identities = 16/63 (25%), Positives = 34/63 (53%), Frame = +3
Query: 180 MYTCIKWKRCMYIY---EMYVCICFHL-IFMXYVLTL*FPLFLQSH*YG-VYVF*FVKYK 344
+Y C+ C+Y+Y +Y+CI +L I++ + L ++ +H + Y++ ++ Y
Sbjct: 3 VYMCLCVCLCVYVYACVSLYICISIYLSIYLSISIYLSIYTYIHTHTHTHTYIYIYI-YI 61
Query: 345 LKYL 356
YL
Sbjct: 62 YIYL 65
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 1.8, P = 0.83
Identities = 12/24 (50%), Positives = 17/24 (70%), Frame = -3
Query: 241 HMHTYIS---YIYIHLFHLIHVYI 179
H HTYI YIYI+L+ +H+Y+
Sbjct: 50 HTHTYIYIYIYIYIYLYLCMHIYV 73
>gi|8778738|gb|AAF79746.1|AC009317_5 (AC009317) T30E16.7 [Arabidopsis thaliana]
Length = 35
Frame -3 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | 35
0 20
Minus Strand HSPs:
Score = 61 (21.5 bits), Expect = 5.2, P = 0.99
Identities = 14/25 (56%), Positives = 19/25 (76%), Frame = -3
Query: 223 SYIYIHLFHL-IHVYISYIYNHTEHI 149
SY Y+++ L I++YI YIYNH HI
Sbjct: 11 SYAYVYICKLYIYIYI-YIYNHI-HI 34
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.97
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.371 0.165 0.633
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.382 0.175 0.649
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.374 0.175 0.630
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.371 0.173 0.598
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.375 0.170 0.587
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.365 0.168 0.600
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 151 150 10. 74 3 12 22 0.092 34
30 0.12 36
+2 0 151 150 10. 74 3 12 22 0.092 34
30 0.12 36
+1 0 152 151 10. 74 3 12 22 0.093 34
30 0.12 36
-1 0 152 151 10. 74 3 12 22 0.093 34
30 0.12 36
-2 0 151 150 10. 74 3 12 22 0.092 34
30 0.12 36
-3 0 151 150 10. 74 3 12 22 0.092 34
30 0.12 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 3
No. of states in DFA: 586 (58 KB)
Total size of DFA: 173 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 124.59u 1.11s 125.70t Elapsed: 00:00:31
Total cpu time: 124.61u 1.13s 125.74t Elapsed: 00:00:31
Start: Wed Jan 23 15:28:20 2002 End: Wed Jan 23 15:28:51 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000