NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs9773192          
refSNP ID: rs9773192
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:119/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_005671.2:c.528+643C>G
NT_007995.14:g.935821C>G
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss13591357 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs9773192 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss13591357BCM_SSAHASNP|chr8.NT_007995.13_935821fwd/BC/Gcaagattgcaccattgcactccagcctggaaacagtagtgaaactccatctcaaaaacaa11/05/0311/22/03119Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs9773192|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='C/G'|mol=Genomic|build=119
 CCCAGAATAg gccgggcatg gtggctgaca tctgtaatcc caacactttg ggaggccgag
 gccgatggag gttgaggcca ggagtttgag accagcctgg ccaacatggt gaaaccccat
 ctctatttaa aaaaaaaaaa AAAGAATAAT TTTCCCTGTT CAATATTAAT GATGTTCTGA
 ATCCAACTTG GAAGCAATAA AGACAAATGA TAATAGGTTT AGAAAATACT CAATTCTTag
 ccaggcactg tggctcatgc ctgtaatccc agcactttgg gacatgaagg caggcagatc
 acctgaggtc aggagttcaa gaccagcctg gccaacatgg tgaaacccca tctctactaa
 aaatacaaaa aaattagctg ggcgtggtgg caggcacctg taatcccagc tactgaggag
 gctgagacag gagaatcgct tgaacctggg aggtggaggt tgcagtgagc caagattgca
 ccattgcact ccagcctgga
 S
 aacagtagtg aaactccatc tcaaaaacaa aaaacaaaaa acaaaaaGgg ctgggcatgg
 tggctcatgc ctgtaatccc agtagtttgg gaggccgagg tgggtggatc acgaggtcac
 gagttcaaga ccagcctggc taagatggta aaaccccatc tctactaaaa atacaaaaat
 tagccaggtg cagtggcagg cgcctgtaat cccagctact caggaggctg aagcaggaga
 atctcttgaa cccagcgggg tggaggttgc agtgagccta gattgcgcca ctgcactcca
 gcctgcgcga cagagtgaga ctccgtctca aaaaaaaaaa aaaaaaagaa TTGATAtttt
 ttctttgttt ttttgagacg gagtctcact ctgtcgccca gactggaata cagtggtgaa
 atctcagctc actgcaggct ctgcctcctg ggttcacacc attctcacca ttctcctgcc
 tcagcctccc gagtagctgg

  GeneView back to top
GeneView via analysis of contig annotation: UBXN8 UBX domain protein 8
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_007995->NM_005671
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_007995->NM_005671->NP_005662935821forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs9773192 maps exactly once on NCBI human chromosome 8
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
8NW_001839128.2814963229161374minusGalt_assembly_8HuRefHuRefview500
8NW_923907.11814297129575133plusCalt_assembly_1CeleraCeleraview500
8NT_007995.1493582130734589plusCref_assemblyreferencereferenceview500

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_007995
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .