Reference SNP(refSNP) Cluster Report: rs512732

Reference SNP(refSNP) Cluster Report: rs512732

refSNP ID: rs512732
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	83/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names

Links

, Linkout

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss682925 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs512732 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss682925	SC_JCM\|Z97197.3_68902	rev/T	A/G	cccccgagtgcacagactggctcttgggtc	gagcctgggttgcttcatctgaaatggagg	07/27/00	04/07/04	83	Genomic	unknown
ss954171	KWOK\|OVLP-000804-419205	fwd/B	C/T	cctccatttcagatgaagcaacccaggctc	gacccaagagccagtctgtgcactcggggg	09/01/00	10/10/03	86	Genomic	99 %
ss954574	KWOK\|OVLP-000804-422557	fwd/B	C/T	cctccatttcagatgaagcaacccaggctc	gacccaagagccagtctgtgcactcggggg	09/01/00	10/10/03	86	Genomic	99 %
ss963181	KWOK\|OVLP-000804-473190	fwd/B	C/T	cctccatttcagatgaagcaacccaggctc	gacccaagagccagtctgtgcactcggggg	09/01/00	10/10/03	86	Genomic	99 %
ss965402	KWOK\|OVLP-000804-484365	fwd/B	C/T	cctccatttcagatgaagcaacccaggctc	gacccaagagccagtctgtgcactcggggg	09/01/00	10/10/03	86	Genomic	99 %
ss1591634	KWOK\|OVLP-000925-269251	fwd/B	C/T	cctccatttcagatgaagcaacccaggctc	gacccaagagccagtctgtgcactcggggg	10/04/00	10/10/03	89	Genomic	99 %
ss1592157	KWOK\|OVLP-000925-273319	fwd/B	C/T	cctccatttcagatgaagcaacccaggctc	gacccaagagccagtctgtgcactcggggg	10/04/00	10/10/03	89	Genomic	99 %
ss2545777	SC_JCM\|AC063942.10_155792	fwd/B	C/T	cctccatttcagatgaagcaacccaggctc	gacccaagagccagtctgtgcactcggggg	11/03/00	10/10/03	92	Genomic	unknown

Fasta sequence (Legend)

 GTCAAAGGTA GCCGACTTGA GCCACACCGC TCCCAGCAGG GCAGAGGGCT GGAGTCAGCA
 CAGGCCGAGT GGCAGCCCTG GAGGGGTTTC TGCTTCTCAG ACCTGCCCAG GGCTCGTTCA
 GGTGGCCACG AAGAGCCTTT CCAGGAAGTG CAGCCTCGGA GGCCTGGGGT CCTCCATTTC
 AGATGAAGCA ACCCAGGCTC
 Y
 GACCCAAGAG CCAGTCTGTG CACTCGGGGG CTTTGAGGTG CCGTCGTGGG TCCGGGGTCT
 GTCCTTCGGT GAGGGAGAGT CGGCACAAAC CCTTGGCTTT GACGGGGTGC TGCCCGTTAG
 TGGAAGCTCC TCCTAACTTA GAACTGAATG TGGACTCTGC CCCCGGGCCA CTGGAGCCCG
 AACTGTCCTA GAGCCCATGC

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs512732 maps exactly once on NCBI human chromosome 12

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
12	NW_001838063.1	9853995	118189089	plus	C	alt_assembly_8	HuRef	HuRef	view	200
12	NT_009775.16	11749311	119664185	plus	C	ref_assembly	reference	reference	view	200
12	NW_925395.1	68437866	120814037	plus	C	alt_assembly_1	Celera	Celera	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
Z97197 AC063942 AC069214 AC069234 Z97197 Z97197.3 Z97197.4 Z97201 Z97201.7

dbSNP Blast Analysis
GenBank HTGS Draft:
Z97197.5 Z97201.10

Population Diversity

	Sample Ascertainment				Genotype Detail			Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	HWP	C	T
ss682925	SC_12_A	Asian	16	IG	1.000			1.000

	SC_12_AA	African American	24	IG	0.833	0.167	1.000	0.917	0.083

	SC_12_C	European	14	IG	1.000			1.000

	SC_95_C	European	92	IG	1.000			1.000

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.027+/-0.113	125	71	6	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .