|
| Status |
Public on Nov 01, 2008 |
| Title |
CUMC07 |
| Sample type |
genomic |
| |
|
| Source Name |
Renal Cell Carcinoma, Clear Cell Type, DNA from Paraffin Embedded Tissue
|
| Organism(s) |
Homo sapiens |
| Characteristics |
Sex:F
AgeDecade:70-79
Tumor Size:6.5
Furhman Nuclear Grade:2
TNM Stage:T3aNxMx
LymphoVascular Invasion:N
|
| Extracted molecule |
genomic DNA |
| Extraction protocol |
Deparaffinization followed by Qiagen DNaasy Mini kit by manufacturer's instructions
|
| Label |
Biotin
|
| Label protocol |
Custom labeling protocol for FFPE tissue based on Affymetrix Mapping 10K Assay (Lyons-Weiler MA et al, Mol Diagn Pathol, 2008 Mar;17(1):3-13)
|
| |
|
| Hybridization protocol |
Affymetrix Mapping 10K Xba 2.0 Assay
|
| Scan protocol |
Affymetrix Mapping 10K Xba 2.0 Assay with an Affymetrix GeneChip 3000 7G scanner
|
| Description |
RenalCellCarcinoma_ClearCell_FFPE_Rep12
|
| Data processing |
Affymetrix GCOS 1.4, GTYPE 4.0 and GDAS 3.0
|
| |
|
| Submission date |
May 14, 2008 |
| Contact name |
Federico A Monzon |
| E-mail(s) |
famonzon@tmhs.org
|
| Organization name |
The Methodist Hospital Research Institute
|
| Department |
Pathology
|
| Street address |
6565 Fannin St., MS205
|
| City |
Houston |
| State/province |
TX |
| ZIP/Postal code |
77030 |
| Country |
USA |
| |
|
| Platform ID |
GPL2641 |
| Series (3) |
| GSE11447 |
Diagnosis of Morphologically Challenging Cases of Renal Epithelial Neoplasms by Virtual Karyotypes with SNP Arrays |
| GSE12808 |
Detection of chromosomal aberrations in renal tumors by virtual karyotyping with SNP microarrays |
| GSE14670 |
Virtual-Karyotyping with SNP microarrays in morphologically challenging renal cell neoplasms |
|
