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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs7204572          
refSNP ID: rs7204572
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:116/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_014700.2:c.714+9617A>G
NT_037887.4:g.426338A>G
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss10841931 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs7204572 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss10841931BCM_SSAHASNP|chr16.NT_037887.3_426338fwd/TA/Gtcaaagaagaagaaaagagatgggatctcatttgttgtctaggctggagtgcagtggtgt06/30/0311/07/03116Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs7204572|allelePos=498|totalLen=998|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130
 AAATATACAA AATACATCTA AAGAAACTTG GATTTTCTAG TAAATTAAAG AACTAGATAG
 AACATTGAAT TTGCATCTGC AGATGCTTTA TGAAGATGGG CTATTTTTAC TGATATTTGG
 AGAAATGCAT ATTAGAAAAT GCCTGTAATT CCTGCTTCTT GGAGAAGGAA AAAAAGAGAT
 GGGATCATTG GCCAGGCACG GTGACTCACA CCTGTAATCC CAGCACTTTG GGAGGCCGAC
 GCCGGCGACT CACAAGGTCA GGAGTTCGAG ACCAGCCTGG CTAACATGGT GAAACCCTGT
 CCCTGCTAAA AGTACAAAAA ATTAGCCGGG CGTGGTGGCA GGCGCCTGTA ATTCCAGCTA
 CTCGGGGGTT GAGGCAGGAG AATTGCTTGA ATCCGAGAGG CGGAGGTTAC AGTGAGCCAA
 GATCGCGCCA CCGCACTCCA GCCCAGGCGA AAGTGCAAGA CTGTGTCTCA AAGAAGAAGA
 AAAGAGATGG GATCTCA
 R
 TTTGTTGTCT AGGCTGGAGT GCAGTGGTGT GATCATGGTT CACTGCAGCC TTGAAGTCCT
 GGGGTGGGTT CAAGGGATTC TCCCACCTCA GCCTCCAGGG GCATGCCCCC ACACCCAGCC
 AATGTTTCAT TTATTTATTT ATTTATTTGT TTATTTATTT TTGAGACAGG GTTTGGCCCT
 GTTGCCCAGG GTGGAGTGCA GTGGCATGAT CTGAGCTCAC TGCAAGCTCC ACCTCCCAGG
 TTCAAGAGAT TCTCCTGCCT CAGCCTCCTG AGTAGCTGGG ACTATAAATG CCTGCCAGCA
 CACCCAGCTA ACTTTTGTGT TTTTTGTAGA GGCGAGGTTT TGCCATGTTG TTAGCCTGCT
 AAGCTCAAAG GATCTGCCCA CCTCGGCGTC CGAAAGTGCT GGGATTACAG ATATGAGCTA
 CCGCGCCCAG CCTTATTTTT ATTTTTCGTA GAGACGAGTT CTCACTGTTA CCCGGATGAA
 CCCCTGGCCT CAAGCAGTCC

  GeneView back to top
GeneView via analysis of contig annotation: RAB11FIP3 RAB11 family interacting protein 3 (class II)
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_037887->NM_014700
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_037887->NM_014700->NP_055515426338forwardintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs7204572 maps exactly once on NCBI human chromosome 16
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
16NW_001838339.22218414405603minusCalt_assembly_8HuRefHuRefview497
16NT_037887.4426338426338plusAref_assemblyreferencereferenceview497
16NW_926018.1402390686740plusAalt_assembly_1CeleraCeleraview497

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_037887
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
with2hit
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .