proteins
| 7 proteins |
S | COG1617 | Uncharacterized conserved protein | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Methanococcus jannaschii (Methanococcales | Methanococci) | ||||
| MJ0187 | ||||
145 letters (r) 0
0 629 = ||| 1 MJ0187 (145) = 2
-2 102 = | 4 MTH722 (156) = 35
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= MJ0187
(145 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
MJ0187 246 8e-66
MTH722 44 1e-04
PAB1522 36 0.028
MA1150 31 0.69
PH0770 31 1.0
MK0270 30 1.2
APE0339 30 1.7
MK0588 30 1.7
CAC2718 30 1.7
MA0526 30 1.9
SPBC1685.02c 30 1.9
ECs1855 30 2.2
ZyciH 30 2.2
yciH 29 3.1
STM1641 28 5.0
Cgl0317 28 6.6
FN1866 28 8.7
AF1032 28 9.3
# >MJ0187
# Length = 145
#
# Score = 246 bits (629), Expect = 8e-66
# Identities = 145/145 (100%), Positives = 145/145 (100%)
#
# Query: 1 MIIRGIRGARINNEIFNLGLKFQILNADVVATKKHVLHAINQAKTKKPIAKSFWMEILVR 60
# MIIRGIRGARINNEIFNLGLKFQILNADVVATKKHVLHAINQAKTKKPIAKSFWMEILVR
# Sbjct: 1 MIIRGIRGARINNEIFNLGLKFQILNADVVATKKHVLHAINQAKTKKPIAKSFWMEILVR 60
#
# Query: 61 ASGQRQIHEAIKIIGAKDGNVCLICEDEETFRKIYELIGGEIDDSVLEINEDKERLIREI 120
# ASGQRQIHEAIKIIGAKDGNVCLICEDEETFRKIYELIGGEIDDSVLEINEDKERLIREI
# Sbjct: 61 ASGQRQIHEAIKIIGAKDGNVCLICEDEETFRKIYELIGGEIDDSVLEINEDKERLIREI 120
#
# Query: 121 FKIRGFGNVVERVLEKIALIELKKE 145
# FKIRGFGNVVERVLEKIALIELKKE
# Sbjct: 121 FKIRGFGNVVERVLEKIALIELKKE 145
#
#
# >MTH722
# Length = 156
#
# Score = 43.9 bits (102), Expect = 1e-04
# Identities = 41/154 (26%), Positives = 77/154 (49%), Gaps = 21/154 (13%)
#
# Query: 3 IRGIRG-----ARINNEIFNLGLKFQILNADVVATKKH----VLHAINQAKTKKPIAKSF 53
# +RG RG + +E+ Q+++A VA ++H +HA+ + + I+
# Sbjct: 5 VRGYRGVVRDLTGLLDEMKGFPCTVQLMDARAVAGREHAIHGAIHALKAFERGQNISSDM 64
#
# Query: 54 WMEILVRASGQRQIHEAIKIIGAKDG--NVCLICED--EETFRKIYELIGGEIDDSVLEI 109
# +EI +R +G RQI I+++G K+G +C + D +E + + + E DD VLE
# Sbjct: 65 GIEICLRVAGMRQISRTIELLGIKEGEMEICAVLVDCGDEVIKFLDSIF--ERDDGVLEP 122
#
# Query: 110 NEDKERLIREIFKIRGFGNVV---ERVLEKIALI 140
# +E+ +R I+ + G V E +LE+ ++
# Sbjct: 123 DEE---YLRRIYDLGGEAETVGVGEALLERTTML 153
#
#
# >PAB1522
# Length = 171
#
# Score = 35.8 bits (81), Expect = 0.028
# Identities = 24/65 (36%), Positives = 36/65 (54%), Gaps = 6/65 (9%)
#
# Query: 26 NADVVATKKH------VLHAINQAKTKKPIAKSFWMEILVRASGQRQIHEAIKIIGAKDG 79
# N +V+ K H + AI + + AK+ EIL+R +G +QI +AIKIIGA+ G
# Sbjct: 61 NCQIVSAKCHEEVIFATILAIKAFSSGRNTAKTIKGEILLRLAGVKQIKDAIKIIGARKG 120
#
# Query: 80 NVCLI 84
# +I
# Sbjct: 121 ENLII 125
#
#
# >MA1150
# Length = 176
#
# Score = 31.2 bits (69), Expect = 0.69
# Identities = 35/139 (25%), Positives = 67/139 (48%), Gaps = 17/139 (12%)
#
# Query: 23 QILNADVVATKKHVLHAINQA----KTKKPIAKSFWMEILVRASGQRQIHEAIKI---IG 75
# Q LNAD++A ++H+ A+ +A +AK +EI+ A+G+RQI + I G
# Sbjct: 38 QGLNADLIAGERHLHFAVGKALRAVAAGTNVAKDPGIEIMRYAAGERQIERSFSIGLHEG 97
#
# Query: 76 AKDGNVCLICEDEE---TFRKIYELIGGEIDDSVLEINEDKERLIREIFKI-------RG 125
# + L+ + F ++ + I + +L ++ K + I +F+I G
# Sbjct: 98 ENNAVFVLLGTMNDLLLAFSELRKFIEEKPCSELLAYSDSKRQGILSLFRITDAEIEASG 157
#
# Query: 126 FGNVVERVLEKIALIELKK 144
# ++ E V+E++AL + K
# Sbjct: 158 EEHIPELVIERVALADFLK 176
#
#
# >PH0770
# Length = 154
#
# Score = 30.8 bits (68), Expect = 1.0
# Identities = 15/41 (36%), Positives = 27/41 (65%)
#
# Query: 39 AINQAKTKKPIAKSFWMEILVRASGQRQIHEAIKIIGAKDG 79
# A+ +++ AK+ EIL+R +G +QI +A+K++GA G
# Sbjct: 63 ALKSFNSERNTAKTVRGEILLRLAGVKQIKDALKLVGASKG 103
#
#
# >MK0270
# Length = 146
#
# Score = 30.4 bits (67), Expect = 1.2
# Identities = 17/45 (37%), Positives = 24/45 (52%)
#
# Query: 27 ADVVATKKHVLHAINQAKTKKPIAKSFWMEILVRASGQRQIHEAI 71
# AD AI ++ + +A+S +E LVR +G RQI EAI
# Sbjct: 44 ADYRVIASAACRAIRAFESDRNLARSLDLEFLVRLTGTRQIREAI 88
#
#
# >APE0339
# Length = 366
#
# Score = 30.0 bits (66), Expect = 1.7
# Identities = 20/78 (25%), Positives = 41/78 (51%), Gaps = 5/78 (6%)
#
# Query: 30 VATKKHVLHAINQAKTKKPIA----KSFWMEILVRASGQRQIHEAIKIIGAKDGNVCLIC 85
# V+ + H+L I+ + PI+ KS W I+ A + +I A + G K G++ ++
# Sbjct: 213 VSGRFHLLAGISDGLPEGPISPLAPKSVW-RIMDPAPFEEKIGWATPVNGYKGGSLLVLL 271
#
# Query: 86 EDEETFRKIYELIGGEID 103
# +T +++Y ++ E+D
# Sbjct: 272 HGVDTEQQVYRVLAAELD 289
#
#
# >MK0588
# Length = 359
#
# Score = 30.0 bits (66), Expect = 1.7
# Identities = 22/71 (30%), Positives = 35/71 (48%), Gaps = 2/71 (2%)
#
# Query: 71 IKIIGAKDGNVCLICEDEETFRKIYELI--GGEIDDSVLEINEDKERLIREIFKIRGFGN 128
# +K GA+ G IC D E F + E + G ID+ LE +E ++ F + F +
# Sbjct: 155 VKFPGARGGRGYFICSDPEEFEEKAERLIEDGVIDEEDLEQAHIEEYVVGTNFCVHYFRS 214
#
# Query: 129 VVERVLEKIAL 139
# VVE +E + +
# Sbjct: 215 VVEDTVEVLGM 225
#
#
# >CAC2718
# Length = 451
#
# Score = 30.0 bits (66), Expect = 1.7
# Identities = 15/33 (45%), Positives = 22/33 (66%)
#
# Query: 87 DEETFRKIYELIGGEIDDSVLEINEDKERLIRE 119
# DEE ++KI L GE + +LE +EDK + IR+
# Sbjct: 81 DEEQYKKIKALTVGEFREFLLENDEDKIKEIRD 113
#
#
# >MA0526
# Length = 382
#
# Score = 30.0 bits (66), Expect = 1.9
# Identities = 20/58 (34%), Positives = 31/58 (52%), Gaps = 2/58 (3%)
#
# Query: 62 SGQRQIHEAIKIIGAKDGNVCLICEDEETFRKIYELIGGEIDDSVLEINEDKERLIRE 119
# +GQR I E K C C + F++IY + GE+D VL++++ ERL+ E
# Sbjct: 175 NGQRNIEEVRKRGAKILLTACPGC--FKAFKEIYPKMFGELDFEVLQVSQYLERLLGE 230
#
#
# >SPBC1685.02c
# Length = 148
#
# Score = 29.6 bits (65), Expect = 1.9
# Identities = 16/58 (27%), Positives = 31/58 (52%), Gaps = 2/58 (3%)
#
# Query: 58 LVRASGQRQIHEAIKIIGAKDGNVCLICE--DEETFRKIYELIGGEIDDSVLEINEDK 113
# LV R I EA K + + ++C++CE D+E + K+ E + E ++++ + K
# Sbjct: 44 LVHDGLARGIREASKALDRRQAHLCVLCESCDQEAYVKLVEALCAESQTPLVKVADPK 101
#
#
# >ECs1855
# Length = 109
#
# Score = 29.6 bits (65), Expect = 2.2
# Identities = 23/76 (30%), Positives = 35/76 (45%), Gaps = 9/76 (11%)
#
# Query: 59 VRASGQRQIHEAIKIIGAKDGNVCLIC----EDEETFRKIYEL-----IGGEIDDSVLEI 109
# VR+ G + + G K VCLI +D E + EL GG + D V+EI
# Sbjct: 26 VRSKGDGVVRIQRQTSGRKGKGVCLITGIDLDDAELTKLAAELKKKCGCGGAVKDGVIEI 85
#
# Query: 110 NEDKERLIREIFKIRG 125
# DK L++ + + +G
# Sbjct: 86 QGDKRDLLKSLLEAKG 101
#
#
# >ZyciH
# Length = 109
#
# Score = 29.6 bits (65), Expect = 2.2
# Identities = 23/76 (30%), Positives = 35/76 (45%), Gaps = 9/76 (11%)
#
# Query: 59 VRASGQRQIHEAIKIIGAKDGNVCLIC----EDEETFRKIYEL-----IGGEIDDSVLEI 109
# VR+ G + + G K VCLI +D E + EL GG + D V+EI
# Sbjct: 26 VRSKGDGVVRIQRQTSGRKGKGVCLITGIDLDDAELTKLAAELKKKCGCGGAVKDGVIEI 85
#
# Query: 110 NEDKERLIREIFKIRG 125
# DK L++ + + +G
# Sbjct: 86 QGDKRDLLKSLLEAKG 101
#
#
# >yciH
# Length = 109
#
# Score = 29.3 bits (64), Expect = 3.1
# Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 9/76 (11%)
#
# Query: 59 VRASGQRQIHEAIKIIGAKDGNVCLIC----EDEETFRKIYEL-----IGGEIDDSVLEI 109
# VR G + + G K VCLI +D E + EL GG + D V+EI
# Sbjct: 26 VRPKGDGVVRIQRQTSGRKGKGVCLITGVDLDDAELTKLAAELKKKCGCGGAVKDGVIEI 85
#
# Query: 110 NEDKERLIREIFKIRG 125
# DK L++ + + +G
# Sbjct: 86 QGDKRDLLKSLLEAKG 101
#
#
# >STM1641
# Length = 1300
#
# Score = 28.5 bits (62), Expect = 5.0
# Identities = 16/52 (30%), Positives = 29/52 (55%), Gaps = 4/52 (7%)
#
# Query: 72 KIIGAKDGNVCLICEDEETFRKIYELIGGEIDDSVLEINEDKERLIREIFKI 123
# K+I A G V E F ++E + E++D+V++I + ER++ +F I
# Sbjct: 1119 KLIDANGGPVW----SEAGFTALHEKVRAELNDTVVDIAKQVERILTTVFNI 1166
#
#
# >Cgl0317
# Length = 548
#
# Score = 28.1 bits (61), Expect = 6.6
# Identities = 21/57 (36%), Positives = 32/57 (55%), Gaps = 5/57 (8%)
#
# Query: 84 ICEDEETFRKIYELIG-GEIDDSVLEINEDKERLIREIFKIRGFGN--VVERVLEKI 137
# I D R++ E + G +D+S E+N+ +RL+ EIF++ F N V E EKI
# Sbjct: 410 IFSDMANPRRLLEAVAEGHLDES--ELNQPVQRLLEEIFQLGLFENPYVSEDEAEKI 464
#
#
# >FN1866
# Length = 425
#
# Score = 27.7 bits (60), Expect = 8.7
# Identities = 13/34 (38%), Positives = 20/34 (58%)
#
# Query: 85 CEDEETFRKIYELIGGEIDDSVLEINEDKERLIR 118
# C DEE F K+YE+ G + D L+++ + L R
# Sbjct: 378 CYDEEKFEKMYEISGVYMLDEGLKMSLEPSHLAR 411
#
#
# >AF1032
# Length = 886
#
# Score = 27.7 bits (60), Expect = 9.3
# Identities = 17/46 (36%), Positives = 30/46 (64%), Gaps = 1/46 (2%)
#
# Query: 100 GEIDDSVLEINEDKERLIREIFKIRGFGNVVERVLEKIALIELKKE 145
# GEI DS++ +E +ER+IR+I +I + N + + I ++E +KE
# Sbjct: 129 GEI-DSIIRDDESRERIIRQITRIEDYENAWKNLGAVIRMLEREKE 173
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.323 0.142 0.394
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 15,459,386
Number of Sequences: 192987
Number of extensions: 601344
Number of successful extensions: 2242
Number of sequences better than 10.0: 55
Number of HSP's better than 10.0 without gapping: 16
Number of HSP's successfully gapped in prelim test: 39
Number of HSP's that attempted gapping in prelim test: 2217
Number of HSP's gapped (non-prelim): 60
length of query: 145
length of database: 59,019,183
effective HSP length: 99
effective length of query: 46
effective length of database: 39,913,470
effective search space: 1836019620
effective search space used: 1836019620
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 60 (27.7 bits)
S2: 60 (27.7 bits)