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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs334064          
refSNP ID: rs334064
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:79/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:G
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss1698747 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs334064 during BLAST analysis for the current build.

NCBI
Assay ID
Handle|Submitter IDValidation
Status
ss to rs
Orientation
/Strand
Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date
Update
Date
Build
Added
Molecule
Type
Freq
Warning
Ancestral
Allele
Success
Rate
ss426344KWOK|OVLP-000621-314847fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct06/30/0010/10/0379Genomic99 %
ss506463SC_JCM|AC011238.4_106366fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct07/12/0010/10/0380Genomicunknown
ss699653SC_JCM|AC011238.5_106667fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct07/27/0010/10/0385Genomicunknown
ss1164707KWOK|OVLP-000804-517725fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct09/02/0010/10/0386Genomic99 %
ss1698747KWOK|OVLP-000925-429413byFreqfwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct10/05/0010/25/0687Genomic99 %
ss21578256SSAHASNP|WGSA-200403-chr2.chr2.NT_005403.14_29210932fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct03/20/0403/20/04121Genomicunknown
ss67294231ILLUMINA|HumanHap550v1.1_rs334064fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct11/14/0611/14/06127Genomicunknown
ss67698232ILLUMINA|HumanHap650Yv1.0_rs334064fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct11/14/0611/14/06127Genomicunknown
ss68219027ILLUMINA|HumanHap250Sv1.0_rs334064fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct12/06/0612/07/06127Genomicunknown
ss70772843ILLUMINA|HumanHap550v3.0__rs334064rev/BC/Tagcaggtggtcaaaggtgttagactcatttatttccccaggaaatcccaggaggtccatc04/20/0703/30/08130Genomicunknown
ss71348386ILLUMINA|HumanHap650Yv3.0_rs334064fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct04/23/0704/23/07127Genomicunknown
ss75761307ILLUMINA|ILMN_Human_1M_rs334064fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct08/28/0708/29/07129Genomicunknown
ss77364290HGSV|Cor12156_SNV_20070510.chr2_178827022fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct10/09/0710/12/07129Genomicunknown
ss81375736HGSV|Cor18507_SNV_20070510.chr2_178827022fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct11/26/0711/29/07130Genomicunknown
ss83430598KRIBB_YJKIM|KHS459850fwd/TA/Ggatggacctcctgggatttcctggggaaataaatgagtctaacacctttgaccacctgct12/04/0712/05/07130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs334064|allelePos=201|totalLen=554|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130
 CATAACCAGC ACAGAAAGAT GTCTTAGCCT CTGCACATCA GCTGATTTAG AATACTTATG
 TAGATAGCGG TTGGGGTCGG GGGGGTGCGG AATGTTCTTT TCAGCTTCTT TGCCCTGAGA
 ACTTTGATCT TATTGCAAGG AAGTCCCTTA CCCTCTTCTA CCCTAGATCT GATGGACCTC
 CTGGGATTTC CTGGGGAAAT
 R
 AAATGAGTCT AACACCTTTG ACCACCTGCT GGATATTATA TCAGCACTTA CTTAAGTAAG
 CTGTGGAAGA GCTGAAAGCA GTATTCAGAG TCTGACAGTT CTCTGCAATT GGCCTAGATA
 AACTCATTGT GAAATAAGTA ACTaaatggg caaaagattt gaacaagcac ttcacaaaag
 aagaCCAAGA AGAGGGCAGG GTTTTTTGTT TGGGGAgttt tatttagttt tgttttgggg
 ttgttttgtt ttgGCAGGGG ACAGGAGTAG TGGATAGATT CATTTTGTAA AGAAATATTA
 AAATATTCTT TTTAATTTGA TAGTTAATAT AAGCTTAAGA ATCTTTTAAA ACT

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs334064 maps exactly once on NCBI human chromosome 2
ChromosomeContig
accession
Contig
position
Chromosome
position
Hit
orientation
Contig
Allele
Assembly
Type
Group
label
Contig
label
Neighbor
SNP
SNP_flank
position
2NW_001838863.14428296170871990plusAalt_assembly_8HuRefHuRefview200
2NW_921585.146794218172604415plusAalt_assembly_1CeleraCeleraview200
2NT_005403.1629210933178709761plusGref_assemblyreferencereferenceview200

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_005403 AC016715 AC016715.4
dbSNP Blast Analysis

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group
Chrom.
Sample Cnt.
SourceA/G
G/G
HWPA
G
ss1698747HapMap-CEUEuropean 120IG 0.233 0.767 0.317 0.117 0.883
HapMap-HCBAsian 88IG 1.000 1.000
HapMap-JPTAsian 90IG 1.000 1.000
HapMap-YRISub-Saharan African 120IG 0.217 0.783 0.371 0.108 0.892

SummaryAverage
Het.+/- std err:
Individual
Count
Founders
Count
Individual
Overlap
Genotype
Conflict
0.121+/-0.21427021000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation
PCR results confirmed
in multiple reactions
Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreq
DoubleHit found by:  BCM_SSAHASNP
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .