BLASTP 2.2.17 [Aug-26-2007]


Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden, 
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= pPI0112 
         (565 letters)

Database: nr 
           5,470,121 sequences; 1,894,087,724 total letters

Searching..................................................done



                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|24379878|ref|NP_721833.1|  putative endonuclease [Strepto...   278   8e-73
gi|148985147|ref|ZP_01818386.1|  endonuclease, putative [Str...   263   3e-68
gi|15901112|ref|NP_345716.1|  endonuclease, putative [Strept...   262   5e-68
gi|149012303|ref|ZP_01833372.1|  endonuclease, putative [Str...   261   9e-68
gi|149007086|ref|ZP_01830755.1|  endonuclease, putative [Str...   260   2e-67
gi|149002619|ref|ZP_01827551.1|  endonuclease, putative [Str...   259   2e-67
gi|148989274|ref|ZP_01820654.1|  endonuclease, putative [Str...   259   2e-67
gi|148998683|ref|ZP_01826122.1|  endonuclease, putative [Str...   257   1e-66
gi|148993860|ref|ZP_01823262.1|  endonuclease, putative [Str...   257   1e-66
gi|15903173|ref|NP_358723.1|  hypothetical protein spr1130 [...   257   2e-66
gi|116515594|ref|YP_816579.1|  endonuclease, putative [Strep...   257   2e-66
gi|149019243|ref|ZP_01834605.1|  endonuclease, putative [Str...   188   1e-45
gi|57237146|ref|YP_178158.1|  McrBC restriction endonuclease...   166   6e-39
gi|121612502|ref|YP_999863.1|  McrBC restriction endonucleas...   149   5e-34
gi|153951772|ref|YP_001397398.1|  putative McrBC restriction...   145   9e-33
gi|21232164|ref|NP_638081.1|  McrB-related protein [Xanthomo...   137   2e-30
gi|15791527|ref|NP_281350.1|  putative endonuclease [Campylo...   137   2e-30
gi|34540720|ref|NP_905199.1|  McrBC restriction endonuclease...   136   4e-30
gi|86153849|ref|ZP_01072052.1|  McrBC restriction endonuclea...   134   1e-29
gi|32266942|ref|NP_860974.1|  putative endonuclease [Helicob...   134   2e-29
gi|57640944|ref|YP_183422.1|  putative 5-methylcytosine rest...   133   3e-29
gi|146294002|ref|YP_001184426.1|  ATPase associated with var...   132   7e-29
gi|124004104|ref|ZP_01688951.1|  5-methylcytosine-specific r...   131   1e-28
gi|85711475|ref|ZP_01042533.1|  hypothetical protein OS145_0...   130   3e-28
gi|45358318|ref|NP_987875.1|  ATP/GTP-binding site motif A (...   126   3e-27
gi|78060551|ref|YP_367126.1|  GTPase subunit of restriction ...   125   5e-27
gi|148926310|ref|ZP_01809994.1|  putative endonuclease [Camp...   125   9e-27
gi|90410149|ref|ZP_01218166.1|  GTPase subunit of restrictio...   123   3e-26
gi|57240286|ref|ZP_00368235.1|  endonuclease, probable [Camp...   121   1e-25
gi|88597447|ref|ZP_01100682.1|  McrBC restriction endonuclea...   118   9e-25
gi|75212130|ref|ZP_00712170.1|  COG1401: GTPase subunit of r...   115   8e-24
gi|66046953|ref|YP_236794.1|  ATPas [Pseudomonas syringae pv...   113   3e-23
gi|77974092|ref|ZP_00829635.1|  COG1401: GTPase subunit of r...   112   6e-23
gi|22127668|ref|NP_671091.1|  hypothetical protein y3797 [Ye...   111   1e-22
gi|16120721|ref|NP_404034.1|  hypothetical protein YPO0387 [...   111   2e-22
gi|1854380|dbj|BAA19243.1|  NcrB [Escherichia coli]               111   2e-22
gi|145600497|ref|YP_001164573.1|  hypothetical protein YPDSF...   111   2e-22
gi|153807704|ref|ZP_01960372.1|  hypothetical protein BACCAC...   110   2e-22
gi|86130664|ref|ZP_01049264.1|  putative endonuclease [Cellu...   110   4e-22
gi|146796|gb|AAA24145.1|  mcrB >gi|537188|gb|AAA97243.1| CG ...   109   5e-22
gi|89111055|ref|AP_004835.1|  5-methylcytosine-specific rest...   109   5e-22
gi|154507700|ref|ZP_02043342.1|  hypothetical protein ACTODO...   109   7e-22
gi|146790|gb|AAA24142.1|  mcrB protein                            108   7e-22
gi|86149519|ref|ZP_01067749.1|  5-methylcytosine-specific re...   108   9e-22
gi|146791|gb|AAA24143.1|  33kD protein (put.); putative           108   1e-21
gi|116669427|ref|YP_830360.1|  ATPase associated with variou...   107   3e-21
gi|125621518|gb|EAZ49851.1|  sensor histidine kinase [Vibrio...   107   3e-21
gi|116220782|ref|ZP_01486205.1|  hypothetical protein VchoV5...   106   3e-21
gi|86741527|ref|YP_481927.1|  AAA_5 ATPase associated with v...   106   4e-21
gi|153000505|ref|YP_001366186.1|  GTPase subunit of restrict...   105   6e-21
gi|119962222|ref|YP_946857.1|  hypothetical protein AAur_106...   105   6e-21
gi|150401934|ref|YP_001329228.1|  hypothetical protein MmarC...   103   4e-20
gi|149173165|ref|ZP_01851796.1|  ATPase associated with vari...   100   3e-19
gi|81096279|ref|ZP_00874626.1|  ATPas [Streptococcus suis 89...    98   1e-18
gi|83645100|ref|YP_433535.1|  GTPase subunit of restriction ...    98   2e-18
gi|146318514|ref|YP_001198226.1|  GTPase subunit of restrict...    97   2e-18
gi|57640730|ref|YP_183208.1|  putative 5-methylcytosine rest...    97   2e-18
gi|28868859|ref|NP_791478.1|  hypothetical protein PSPTO_165...    97   3e-18
gi|124519812|ref|ZP_01695282.1|  ATPase associated with vari...    97   3e-18
gi|94970780|ref|YP_592828.1|  ATPase associated with various...    97   4e-18
gi|146320708|ref|YP_001200419.1|  GTPase subunit of restrict...    96   6e-18
gi|145223785|ref|YP_001134463.1|  ATPase associated with var...    96   7e-18
gi|149019244|ref|ZP_01834606.1|  endonuclease, putative [Str...    95   1e-17
gi|119714076|ref|YP_919218.1|  ATPase associated with variou...    95   2e-17
gi|110799098|ref|YP_695439.1|  McrB domain protein [Clostrid...    95   2e-17
gi|108797806|ref|YP_638003.1|  ATPase associated with variou...    95   2e-17
gi|48477100|ref|YP_022806.1|  5-methylcytosine-specific rest...    94   3e-17
gi|153012112|ref|YP_001373323.1|  GTPase subunit of restrict...    93   4e-17
gi|104782352|ref|YP_608850.1|  hypothetical protein PSEEN330...    93   4e-17
gi|118031290|ref|ZP_01502745.1|  ATPase associated with vari...    93   5e-17
gi|109671972|ref|ZP_01374215.1|  putative endonuclease [Camp...    92   1e-16
gi|148549822|ref|YP_001269924.1|  ATPase associated with var...    92   1e-16
gi|113866039|ref|YP_724528.1|  5-Methylcytosine-specific res...    92   1e-16
gi|23126777|ref|ZP_00108663.1|  COG1401: GTPase subunit of r...    91   2e-16
gi|126656651|ref|ZP_01727865.1|  putative restriction enzyme...    91   2e-16
gi|156449126|ref|ZP_02055509.1|  ATPase associated with vari...    91   2e-16
gi|56479205|ref|YP_160794.1|  AAA ATPase superfamily protein...    91   3e-16
gi|115378762|ref|ZP_01465907.1|  ATPase family associated wi...    91   3e-16
gi|118444185|ref|YP_877506.1|  endonuclease, putative [Clost...    90   4e-16
gi|49482329|ref|YP_039553.1|  putative restriction enzyme [S...    89   7e-16
gi|55379062|ref|YP_136912.1|  hypothetical protein rrnAC2392...    89   9e-16
gi|145294212|ref|YP_001137033.1|  hypothetical protein cgR_0...    88   1e-15
gi|92109628|ref|YP_571915.1|  ATPase associated with various...    87   3e-15
gi|119490044|ref|ZP_01622668.1|  component of 5-methylcytosi...    87   3e-15
gi|126438633|ref|YP_001060513.1|  AAA_5 ATPase [Burkholderia...    87   3e-15
gi|145954110|ref|ZP_01803117.1|  hypothetical protein CdifQ_...    87   4e-15
gi|134297904|ref|YP_001111400.1|  ATPase associated with var...    87   4e-15
gi|86748715|ref|YP_485211.1|  AAA_5 ATPase [Rhodopseudomonas...    86   5e-15
gi|30250447|ref|NP_842517.1|  AAA ATPase superfamily [Nitros...    86   5e-15
gi|67922732|ref|ZP_00516235.1|  ATPaseATPas [Crocosphaera wa...    86   6e-15
gi|119486444|ref|ZP_01620502.1|  putative restriction enzyme...    86   6e-15
gi|126699711|ref|YP_001088608.1|  putative restriction enzym...    86   7e-15
gi|149369914|ref|ZP_01889765.1|  5-Methylcytosine-specific r...    86   8e-15
gi|84390144|ref|ZP_00991406.1|  GTPase subunit of restrictio...    84   2e-14
gi|77458885|ref|YP_348391.1|  GTPase subunit of restriction ...    81   2e-13
gi|73670717|ref|YP_306732.1|  hypothetical protein Mbar_A327...    81   2e-13
gi|20090962|ref|NP_617037.1|  hypothetical protein MA2119 [M...    81   2e-13
gi|75198123|ref|ZP_00708193.1|  COG1401: GTPase subunit of r...    81   2e-13
gi|10957435|ref|NP_051672.1|  McrB-related protein [Deinococ...    80   3e-13
gi|89891074|ref|ZP_01202582.1|  putative GTPase subunit of r...    80   5e-13
gi|113477076|ref|YP_723137.1|  ATPase associated with variou...    78   1e-12
gi|75187706|ref|ZP_00700973.1|  COG1401: GTPase subunit of r...    78   2e-12
gi|88602580|ref|YP_502758.1|  ATPase associated with various...    77   3e-12
gi|93005767|ref|YP_580204.1|  ATPase associated with various...    75   1e-11
gi|91216791|ref|ZP_01253755.1|  GTPase subunit of restrictio...    74   2e-11
gi|93005083|ref|YP_579520.1|  ATPase associated with various...    72   1e-10
gi|148653828|ref|YP_001280921.1|  GTPase subunit of restrict...    67   3e-09
gi|71064806|ref|YP_263533.1|  probable endonuclease [Psychro...    66   8e-09
gi|148653161|ref|YP_001280254.1|  ATPase associated with var...    65   1e-08
gi|1149676|emb|CAA60208.1|  mcrB [Clostridium perfringens]         62   8e-08
gi|87125171|ref|ZP_01081018.1|  AAA ATPase superfamily prote...    62   9e-08
gi|94311600|ref|YP_584810.1|  ATPase associated with various...    62   9e-08
gi|77977894|ref|ZP_00833332.1|  COG1401: GTPase subunit of r...    62   9e-08
gi|111020925|ref|YP_703897.1|  probable 5-methylcytosine-spe...    62   1e-07
gi|91976450|ref|YP_569109.1|  ATPase associated with various...    61   2e-07
gi|116217130|ref|ZP_01482944.1|  hypothetical protein VchoR_...    57   3e-06
gi|15611234|ref|NP_222885.1|  putative restriction enzyme [H...    57   4e-06
gi|150421004|gb|EDN13289.1|  GTPase subunit of restriction e...    57   4e-06
gi|109672659|ref|ZP_01374895.1|  restriction endonuclease [C...    56   6e-06
gi|30019094|ref|NP_830725.1|  Type II restriction-modificati...    56   7e-06
>gi|24379878|ref|NP_721833.1| putative endonuclease [Streptococcus mutans UA159]
 gi|24377853|gb|AAN59139.1|AE014980_6 putative endonuclease [Streptococcus mutans UA159]
          Length = 567

 Score =  278 bits (710), Expect = 8e-73,   Method: Composition-based stats.
 Identities = 219/590 (37%), Positives = 317/590 (53%), Gaps = 71/590 (12%)

Query: 10  RYWCVGHIFNKTEEQQPRFIEEGIWE-AWFIDTADAQRQ--LKLAKEIKKGDIVILRAL- 65
           +Y+ VG  F + +  +  + EEG WE  W+ D  +AQ Q  LK+  +IK GDI++ +   
Sbjct: 7   KYYFVGTKFGEYDNLE-HYKEEGKWELGWYNDEENAQYQKMLKVFNKIKSGDILLAKTSY 65

Query: 66  ---------KGNNENPSIPFICVSASGEVISDEKSINIVGKYTKVSYKVNYFWQGEE--- 113
                    K N+   S+  I   A  + + D+K   IV      S +  YF+ G+E   
Sbjct: 66  TKKNNLPFEKKNDMTVSVMKIRGMAIVKEVLDDKHTVIVDWKENYSEREWYFFTGQETIW 125

Query: 114 ---NFNDPEYKHYQGI-------INECKNIEIVN--YINSVRN--AEPTRKYAKYIELLE 159
              N  + E +  Q I       I E      +N  Y N  +    E   K   Y ++L+
Sbjct: 126 VPSNIKNREKETSQLIDFATSEKIKEQNYDYFLNHPYWNKYKKIETEENLKLQNYKDILK 185

Query: 160 QNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDSD- 217
            +KNL+L GAPGTGKT++A+ IA+E+   ++D++ FVQFHPSYDYTDFVEGLRP    D 
Sbjct: 186 TSKNLILRGAPGTGKTYLAKQIAEELTDGNEDQIGFVQFHPSYDYTDFVEGLRPSSGDDG 245

Query: 218 NFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAID---EGTKFK 274
             GF+L++G+F++FC KA        K       + +  E  + F E   D   +G+   
Sbjct: 246 QIGFKLQDGIFREFCKKA--------KKATESGGQDNFDEAWDKFFEAVNDVDPDGSYDI 297

Query: 275 TSGTKNSFSIVE--NNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSGKDIQAHF 332
            + T     ++    NE +  +E    + +  +  +KA+  ++   +  V  G       
Sbjct: 298 KTLTGKPMHLIAYMRNEMSGVME----KGSASLFYNKAQCYNIYKGDSGVPKGG---LDN 350

Query: 333 HRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFF 392
           +RK   +     + L N +K                K +VFIIDEINRG+ISKIFGELFF
Sbjct: 351 YRKAVVKHLKEKYGLVNYVKP---------TETTTDKKFVFIIDEINRGEISKIFGELFF 401

Query: 393 AIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRR 452
           +IDP YRGE+G V+TQY N+ E  + F    ++PENVYIIGTMNDIDRSV+  DFAMRRR
Sbjct: 402 SIDPDYRGEKGAVSTQYANLHETDEKF----YIPENVYIIGTMNDIDRSVDTFDFAMRRR 457

Query: 453 FSWVEVTPNDTESML---DELSC--VEEAKETMERLNKAIEETEGLGSAYMIGPAYFRKL 507
           F +VE+   DT  M    DE     +EEA+  +  LNKAI  TEGL S Y IGP+YF KL
Sbjct: 458 FRFVEIKAADTMGMWENNDEFDNDKIEEARIRLTNLNKAISNTEGLNSHYHIGPSYFLKL 517

Query: 508 GENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAYVGEKEEEHSN 557
            +   D+D LW   +EPLL++YLRG     + +++L++AY  E+E + ++
Sbjct: 518 KDLDYDYDILWSDYLEPLLKDYLRGSYDETDSLDKLKDAYNNEEETDETH 567
>gi|148985147|ref|ZP_01818386.1| endonuclease, putative [Streptococcus pneumoniae SP3-BS71]
 gi|147922592|gb|EDK73710.1| endonuclease, putative [Streptococcus pneumoniae SP3-BS71]
          Length = 668

 Score =  263 bits (671), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 180/411 (43%), Positives = 243/411 (59%), Gaps = 57/411 (13%)

Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLR 211
           +Y  +L Q+KNL+L GAPGTGKT++A+ IAKE+   ++D++ FVQFHPSYDYTDFVEGLR
Sbjct: 273 EYKNILLQSKNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLR 332

Query: 212 PVRDSDN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEG 270
           PV + D    F L++G+FKDFC KA           +  Q  G      +D  +EA D  
Sbjct: 333 PVSNGDGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSY 376

Query: 271 TKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG----- 325
            ++                  I V   A EK  + K S   +    + +++  SG     
Sbjct: 377 LEY------------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWS 415

Query: 326 ---KDIQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEI 378
              K +   +  K+  +Q+ Y      +   ++K+   K  V  +++DT K +VFIIDEI
Sbjct: 416 LPSKYVYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYVSPTEIDTDKKFVFIIDEI 475

Query: 379 NRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDI 438
           NRG+ISKIFGELFF+IDPGYRGE+G V+TQY N+ E  +     F++PENVYIIGTMNDI
Sbjct: 476 NRGEISKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDI 531

Query: 439 DRSVENMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSA 496
           DRSV+  DFAMRRRF +VEVT      MLD EL+   EEAK  +  LN AIE  + L S 
Sbjct: 532 DRSVDTFDFAMRRRFRFVEVTAEGQVGMLDKELNIHAEEAKIRLRNLNAAIENVQELNSH 591

Query: 497 YMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
           Y IGP+YF KL +   D++ LW   I+PLL +YLRG     E +  L++A+
Sbjct: 592 YHIGPSYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 642
>gi|15901112|ref|NP_345716.1| endonuclease, putative [Streptococcus pneumoniae TIGR4]
 gi|111658426|ref|ZP_01409105.1| hypothetical protein SpneT_02000397 [Streptococcus pneumoniae
           TIGR4]
 gi|14972734|gb|AAK75356.1| putative endonuclease [Streptococcus pneumoniae TIGR4]
          Length = 643

 Score =  262 bits (669), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 178/406 (43%), Positives = 240/406 (59%), Gaps = 57/406 (14%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
           L ++ NL+L GAPGTGKT++A+ IAKE+   ++D++ FVQFHPSYDYTDFVEGLRPV + 
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312

Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
           D    F L++G+FKDFC KA           +  Q  G      +D  +EA D   ++  
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354

Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
                           I V   A EK  + K S   +    + +++  SG        K 
Sbjct: 355 ----------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKY 395

Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
           +   +  K+  +Q+ Y      +   ++K+   K  V  +++DT KN+VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYVSPTEIDTDKNFVFIIDEINRGEI 455

Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
           SKIFGELFF+IDPGYRGE+G V+TQY N+ E  +     F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511

Query: 444 NMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGP 501
             DFAMRRRF +VEVT      MLD EL+   EEAK  +  LN AIE  + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTVEGQAGMLDKELNIHAEEAKIRLRNLNAAIENIQELNSHYHIGP 571

Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
           +YF KL +   D++ LW   I+PLL +YLRG     E +  L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|149012303|ref|ZP_01833372.1| endonuclease, putative [Streptococcus pneumoniae SP19-BS75]
 gi|147763629|gb|EDK70564.1| endonuclease, putative [Streptococcus pneumoniae SP19-BS75]
          Length = 643

 Score =  261 bits (667), Expect = 9e-68,   Method: Composition-based stats.
 Identities = 176/395 (44%), Positives = 241/395 (61%), Gaps = 35/395 (8%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
           L ++ NL+L GAPGTGKT++A+ IAKE+   ++D++ FVQFHPSYDYTDFVEGLRP  + 
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPDSNE 312

Query: 217 D-NFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
           D +  F+L+ G+FK FC    QN  DS+K I         R++  +++   IDE      
Sbjct: 313 DGSIFFKLKEGIFKKFC----QNAIDSKK-IGGQDNFDEARDLYLEYVNN-IDEKEYL-- 364

Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSGKDIQAHFHRK 335
                 FS +  N R     +    K +   L+K+ + +L  +   +K     Q ++H +
Sbjct: 365 ----TEFSYLTVNSRN-NFNINYETKAKGTVLTKSYVYELYKDENYLK-----QPYYHNQ 414

Query: 336 HRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDISKIFGELFFAI 394
            +         +   +KK+   K  +   +V+T KN+VFIIDEINRG+ISKIFGELFF+I
Sbjct: 415 GKK--------VLETLKKRFGLKDYISPEEVETDKNFVFIIDEINRGEISKIFGELFFSI 466

Query: 395 DPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFS 454
           DPGYRGE+G V+TQY N+ E  +     F++PENVYIIGTMNDIDRSV+  DFAMRRRF 
Sbjct: 467 DPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVDTFDFAMRRRFR 522

Query: 455 WVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGD 512
           +VEVT      MLD EL+   EEAK  +  LN AIE  + L S Y IGP+YF KL +   
Sbjct: 523 FVEVTVEGQAGMLDKELNIHAEEAKIRLRNLNAAIENIQELNSHYHIGPSYFLKLKDVDF 582

Query: 513 DFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
           D++ LW   I+PLL +YLRG     E +  L++A+
Sbjct: 583 DYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|149007086|ref|ZP_01830755.1| endonuclease, putative [Streptococcus pneumoniae SP18-BS74]
 gi|147761390|gb|EDK68356.1| endonuclease, putative [Streptococcus pneumoniae SP18-BS74]
          Length = 643

 Score =  260 bits (664), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 177/406 (43%), Positives = 239/406 (58%), Gaps = 57/406 (14%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
           L ++ NL+L GAPGTGKT++A+ IAKE+   ++D++ FVQFHPSYDYTDFVEGLRPV + 
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312

Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
           D    F L++G+FKDFC KA           +  Q  G      +D  +EA D   ++  
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354

Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
                           I V   A EK  + K S   +    + +++  SG        K 
Sbjct: 355 ----------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKY 395

Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
           +   +  K+  +Q+ Y      +   ++K+   K  V  +++DT K +VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYVSPTEIDTDKKFVFIIDEINRGEI 455

Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
           SKIFGELFF+IDPGYRGE+G V+TQY N+ E  +     F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511

Query: 444 NMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGP 501
             DFAMRRRF +VEVT      MLD EL+   EEAK  +  LN AIE  + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTAEGQVGMLDKELNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 571

Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
           +YF KL +   D++ LW   I+PLL +YLRG     E +  L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|149002619|ref|ZP_01827551.1| endonuclease, putative [Streptococcus pneumoniae SP14-BS69]
 gi|147759230|gb|EDK66223.1| endonuclease, putative [Streptococcus pneumoniae SP14-BS69]
          Length = 643

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 177/406 (43%), Positives = 239/406 (58%), Gaps = 57/406 (14%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
           L ++ NL+L GAPGTGKT++A+ IAKE+   ++D++ FVQFHPSYDYTDFVEGLRPV + 
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312

Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
           D    F L++G+FKDFC KA           +  Q  G      +D  +EA D   ++  
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354

Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
                           I V   A EK  + K S   +    + +++  SG        K 
Sbjct: 355 ----------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKY 395

Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
           +   +  K+  +Q+ Y      +   ++K+   K  V  +++DT K +VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYVSPTEIDTDKKFVFIIDEINRGEI 455

Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
           SKIFGELFF+IDPGYRGE+G V+TQY N+ E  +     F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511

Query: 444 NMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGP 501
             DFAMRRRF +VEVT      MLD EL+   EEAK  +  LN AIE  + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTAEGQVGMLDKELNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 571

Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
           +YF KL +   D++ LW   I+PLL +YLRG     E +  L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|148989274|ref|ZP_01820654.1| endonuclease, putative [Streptococcus pneumoniae SP6-BS73]
 gi|147925252|gb|EDK76331.1| endonuclease, putative [Streptococcus pneumoniae SP6-BS73]
          Length = 643

 Score =  259 bits (663), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 177/406 (43%), Positives = 239/406 (58%), Gaps = 57/406 (14%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
           L ++ NL+L GAPGTGKT++A+ IAKE+   ++D++ FVQFHPSYDYTDFVEGLRPV + 
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312

Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
           D    F L++G+FKDFC KA           +  Q  G      +D  +EA D   ++  
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354

Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
                           I V   A EK  + K S   +    + +++  SG        K 
Sbjct: 355 ----------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKY 395

Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
           +   +  K+  +Q+ Y      +   ++K+   K  V  +++DT K +VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYVSPTEIDTDKKFVFIIDEINRGEI 455

Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
           SKIFGELFF+IDPGYRGE+G V+TQY N+ E  +     F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511

Query: 444 NMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGP 501
             DFAMRRRF +VEVT      MLD EL+   EEAK  +  LN AIE  + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTAEGQVGMLDKELNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 571

Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
           +YF KL +   D++ LW   I+PLL +YLRG     E +  L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|148998683|ref|ZP_01826122.1| endonuclease, putative [Streptococcus pneumoniae SP11-BS70]
 gi|147755520|gb|EDK62568.1| endonuclease, putative [Streptococcus pneumoniae SP11-BS70]
          Length = 643

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 176/406 (43%), Positives = 238/406 (58%), Gaps = 57/406 (14%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
           L ++ NL+L GAPGTGKT++A+ IAKE+   ++D++ FVQFHPSYDYTDFVEGLRPV + 
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312

Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
           D    F L++G+FKDFC KA           +  Q  G      +D  +EA D   ++  
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354

Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
                           I V   A EK  + K S   +    + +++  SG        K 
Sbjct: 355 ----------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKY 395

Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
           +   +  K+  +Q+ Y      +   ++K+   K  +   +V+T K +VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYISPEEVETDKKFVFIIDEINRGEI 455

Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
           SKIFGELFF+IDPGYRGE+G V+TQY N+ E  +     F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511

Query: 444 NMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGP 501
             DFAMRRRF +VEVT      MLD EL+   EEAK  +  LN AIE  + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTAEGQVGMLDKELNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 571

Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
           +YF KL +   D++ LW   I+PLL +YLRG     E +  L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|148993860|ref|ZP_01823262.1| endonuclease, putative [Streptococcus pneumoniae SP9-BS68]
 gi|147927685|gb|EDK78710.1| endonuclease, putative [Streptococcus pneumoniae SP9-BS68]
          Length = 643

 Score =  257 bits (657), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 176/406 (43%), Positives = 238/406 (58%), Gaps = 57/406 (14%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
           L ++ NL+L GAPGTGKT++A+ IAKE+   ++D++ FVQFHPSYDYTDFVEGLRPV + 
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312

Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
           D    F L++G+FKDFC KA           +  Q  G      +D  +EA D   ++  
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354

Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
                           I V   A EK  + K S   +    + +++  SG        K 
Sbjct: 355 ----------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKY 395

Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
           +   +  K+  +Q+ Y      +   ++K+   K  V  +++DT K +VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYVSPTEIDTDKKFVFIIDEINRGEI 455

Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
           SKIFGELFF+I PGYRGE+G V+TQY N+ E  +     F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIGPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511

Query: 444 NMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGP 501
             DFAMRRRF +VEVT      MLD EL+   EEAK  +  LN AIE  + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTAEGQVGMLDKELNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 571

Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
           +YF KL +   D++ LW   I+PLL +YLRG     E +  L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|15903173|ref|NP_358723.1| hypothetical protein spr1130 [Streptococcus pneumoniae R6]
 gi|15458758|gb|AAK99933.1| Hypothetical protein [Streptococcus pneumoniae R6]
          Length = 644

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 174/406 (42%), Positives = 237/406 (58%), Gaps = 57/406 (14%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
           L ++ NL+L GAPGTGKT++A+ IAKE+   ++D++ FVQFHPSYDYTDFVEGLRPV + 
Sbjct: 254 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 313

Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
           D    F L++G+FKDFC KA           +  Q  G      +D  +EA D   ++  
Sbjct: 314 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 355

Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
                           I V   A EK  + K S   +    + +++  SG        K 
Sbjct: 356 ----------------INV---AEEKEYITKTSDLSVNSRQNLSVNYDSGVPGWSLPSKY 396

Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
           +   +  K+  +Q+ Y      +   ++K+   K  +   +V+T K +VFIIDEINRG+I
Sbjct: 397 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYISPEEVETDKKFVFIIDEINRGEI 456

Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
           SKIFGELFF+IDPGYRGE+G V+TQY N+ E  +     F++PENVYIIGTMNDIDRSV+
Sbjct: 457 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 512

Query: 444 NMDFAMRRRFSWVEVTPNDTESMLDELSCV--EEAKETMERLNKAIEETEGLGSAYMIGP 501
             DFAMRRRF +VEVT      MLD+   +  EEAK  +  LN AIE  + L S Y IGP
Sbjct: 513 TFDFAMRRRFRFVEVTAEGQVGMLDKDLNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 572

Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
           +YF KL +   D++ LW   I+PLL +YLRG     E +  L++A+
Sbjct: 573 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 618
>gi|116515594|ref|YP_816579.1| endonuclease, putative [Streptococcus pneumoniae D39]
 gi|116076170|gb|ABJ53890.1| endonuclease, putative [Streptococcus pneumoniae D39]
          Length = 643

 Score =  257 bits (656), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 174/406 (42%), Positives = 237/406 (58%), Gaps = 57/406 (14%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
           L ++ NL+L GAPGTGKT++A+ IAKE+   ++D++ FVQFHPSYDYTDFVEGLRPV + 
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312

Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
           D    F L++G+FKDFC KA           +  Q  G      +D  +EA D   ++  
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354

Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
                           I V   A EK  + K S   +    + +++  SG        K 
Sbjct: 355 ----------------INV---AEEKEYITKTSDLSVNSRQNLSVNYDSGVPGWSLPSKY 395

Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
           +   +  K+  +Q+ Y      +   ++K+   K  +   +V+T K +VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYISPEEVETDKKFVFIIDEINRGEI 455

Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
           SKIFGELFF+IDPGYRGE+G V+TQY N+ E  +     F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511

Query: 444 NMDFAMRRRFSWVEVTPNDTESMLDELSCV--EEAKETMERLNKAIEETEGLGSAYMIGP 501
             DFAMRRRF +VEVT      MLD+   +  EEAK  +  LN AIE  + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTAEGQVGMLDKDLNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 571

Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
           +YF KL +   D++ LW   I+PLL +YLRG     E +  L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|149019243|ref|ZP_01834605.1| endonuclease, putative [Streptococcus pneumoniae SP23-BS72]
 gi|147931113|gb|EDK82092.1| endonuclease, putative [Streptococcus pneumoniae SP23-BS72]
          Length = 307

 Score =  188 bits (477), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 109/200 (54%), Positives = 139/200 (69%), Gaps = 7/200 (3%)

Query: 351 IKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQY 409
           ++K+   K  V  +++DT K +VFIIDEINRG+ISKIFGELFF+IDPGYRGE+G V+TQY
Sbjct: 86  LRKRFGLKDYVSPTEIDTDKKFVFIIDEINRGEISKIFGELFFSIDPGYRGEKGSVSTQY 145

Query: 410 QNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLD- 468
            N+ E  +     F++PENVYIIGTMNDIDRSV+  DFAMRRRF +VEVT      MLD 
Sbjct: 146 ANLHETDEK----FYIPENVYIIGTMNDIDRSVDTFDFAMRRRFRFVEVTAEGQVGMLDK 201

Query: 469 ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLR 527
           EL+   EEAK  +  LN AIE  + L S Y IGP+YF KL +   D++ LW   I+PLL 
Sbjct: 202 ELNIHAEEAKIRLRNLNTAIENVQELNSHYHIGPSYFLKLKDVDFDYELLWSDYIKPLLE 261

Query: 528 EYLRGFRKTNEIMNQLREAY 547
           +YLRG     E +  L++A+
Sbjct: 262 DYLRGSYDEVETLETLKKAF 281
>gi|57237146|ref|YP_178158.1| McrBC restriction endonuclease system, McrB subunit, putative
           [Campylobacter jejuni RM1221]
 gi|57165950|gb|AAW34729.1| McrBC restriction endonuclease system, McrB subunit, putative
           [Campylobacter jejuni RM1221]
          Length = 662

 Score =  166 bits (419), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 141/422 (33%), Positives = 215/422 (50%), Gaps = 49/422 (11%)

Query: 163 NLVLTGAPGTGKTFMAQAIAKEM-----------------GCSDDEMAFVQFHPSYDYTD 205
           N +L G PGTGKT+     A E+                    + ++ F  FH SY Y +
Sbjct: 211 NQILYGPPGTGKTYHTIDKALEILGENLENRDEKKAKFDEYVKNGQIVFTTFHQSYGYEE 270

Query: 206 FVEGLRPVRDSDN----FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILED 261
           FVEG++P  DS        +E+++G+FK+ C KAL N+K S    E   K   +   +E 
Sbjct: 271 FVEGIKPRIDSKENSKEVEYEIKDGIFKELCKKALDNYKVSLLTQEEFVKSEDLENKIEI 330

Query: 262 FIEEAIDEGTKFKTSGTKNSFSIVENNE--RTITVEVPANEKTRLVKLSKAELIDLMDNN 319
           F++E +D+  KF        F + E NE  R IT +  AN     + L+      L++N 
Sbjct: 331 FLDELVDQ-QKFIEKIQSGGFKLEEYNEKYRIITDDTNAN-----LYLNLEIFKTLLENK 384

Query: 320 ISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKK--QAAKKPSVEVSKVDTKNYVFIIDE 377
             + +G+ I+   + KHR Q DSY F L  + K+  Q  K  +    K + K Y+ IIDE
Sbjct: 385 DKIINGRSIKQILNNKHRRQIDSYYFQLVKLFKEREQDYKVDNNPSEKPELKPYIIIIDE 444

Query: 378 INRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGT 434
           INRG++SKIFGEL   I+P  R    E  KV   Y           + F VP+NVYIIGT
Sbjct: 445 INRGNVSKIFGELITLIEPSKRIGEKEELKVTLPYSG---------EKFGVPKNVYIIGT 495

Query: 435 MNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEGLG 494
           MN  DRS+ ++D A+RRRF ++E+ P+ ++  +D        +E ++ +N  IE    L 
Sbjct: 496 MNTADRSITSLDTALRRRFEFIEMMPDVSKLSMDCEGI--NLQELLKAINTRIEYL--LD 551

Query: 495 SAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL-RGFRKTNEIMNQLREAYVGEKEE 553
               IG A+F  + EN +D  K+++  I PLL+EY    +   NE++N     +  +K++
Sbjct: 552 REKTIGHAFFVSV-ENLEDLKKVFQNKIIPLLQEYFYNDYALINEVLNDNGMIFEDKKDD 610

Query: 554 EH 555
           ++
Sbjct: 611 KY 612
>gi|121612502|ref|YP_999863.1| McrBC restriction endonuclease system, McrB subunit, putative
           [Campylobacter jejuni subsp. jejuni 81-176]
 gi|121504171|gb|EAQ73019.2| McrBC restriction endonuclease system, McrB subunit, putative
           [Campylobacter jejuni subsp. jejuni 81-176]
          Length = 603

 Score =  149 bits (376), Expect = 5e-34,   Method: Composition-based stats.
 Identities = 130/410 (31%), Positives = 213/410 (51%), Gaps = 58/410 (14%)

Query: 160 QNKNL----VLTGAPGTGKTFMA-----QAIAKEMGCSDDEMA------------FVQFH 198
           +NKN+    +L G+PGTGKT+       + + K +   DD+ A            F  FH
Sbjct: 154 ENKNMPLNQILYGSPGTGKTYHTIDKALEILGKNLESRDDKKAKFDEYVKKGQIVFTTFH 213

Query: 199 PSYDYTDFVEGLRPVRDSDN----FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGS 254
            SY Y +FVEG++P  DS        +++++G+FK+ C KAL N+++S    + L K+  
Sbjct: 214 QSYGYEEFVEGIKPRIDSKENSKEIEYKIKDGIFKELCEKALDNYENSILNADELNKKIE 273

Query: 255 VREILEDFIEEAIDEGTKF-KTSGTKNSFSIVENNERTITVEVPANEK-TRLVKLSKAEL 312
           ++E +E+F+   ++      KT G   +F +VE + +TI +     E+   +  L+ +  
Sbjct: 274 LKEKVENFLNWLLETNEPIGKTKG--GNFFVVEIDNKTIVIYSEGVERFDGIFNLNLSIF 331

Query: 313 IDLMDNNISVKSGKDI-QAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDT--- 368
           ++L+       +  ++ +  F+R +  +  +Y F   N++KK  A +     +K++    
Sbjct: 332 MELLKCKDEFNNATEMFKKVFNRDYADRTHTYYF---NLVKKFKAYEEKQLAAKIENNKN 388

Query: 369 -----KNYVFIIDEINRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFK 420
                K Y+ IIDEINRG++SKIFGEL   I+P  R    E  KV   Y           
Sbjct: 389 NDNSLKPYIIIIDEINRGNLSKIFGELITLIEPSKRIGEKEELKVTLPYSG--------- 439

Query: 421 DGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETM 480
           + F VP+NVYIIGTMN  DRS+ ++D A+RRRF +VE+ P+ ++  +D        +E +
Sbjct: 440 EKFGVPKNVYIIGTMNTADRSITSLDTALRRRFEFVEMMPDVSKLSIDCEGI--NLQELL 497

Query: 481 ERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
           + +N  IE    L     IG A+F  + EN +   K++K  I PLL+EY 
Sbjct: 498 KAINTRIEYL--LDREKTIGHAFFISV-ENLESLKKVFKNRIIPLLQEYF 544
>gi|153951772|ref|YP_001397398.1| putative McrBC restriction endonuclease system, McrB subunit
           [Campylobacter jejuni subsp. doylei 269.97]
 gi|152939218|gb|ABS43959.1| putative McrBC restriction endonuclease system, McrB subunit
           [Campylobacter jejuni subsp. doylei 269.97]
          Length = 598

 Score =  145 bits (365), Expect = 9e-33,   Method: Composition-based stats.
 Identities = 134/432 (31%), Positives = 224/432 (51%), Gaps = 62/432 (14%)

Query: 111 GEENFNDPEYKHYQGIINE-CKNIE-IVNYINSV-RNAEPTR-KYAKYIELLEQNKNLVL 166
           G+  + D +YK ++   N+  K+ + ++NY N   +N    R +++ +I L     N +L
Sbjct: 146 GKLRYFDFKYKDFEKETNQIVKDFQDMINYFNIFDKNDFKLRAEFSTFIPL-----NQIL 200

Query: 167 TGAPGTGKTFMA-----QAIAKE----MGCSDD---------------EMAFVQFHPSYD 202
            G PGTGKT+       + I+KE    +   DD               ++ F  FH SY 
Sbjct: 201 YGPPGTGKTYHTIDKALEIISKEEKIQIPSEDDRINRKKLFDEYVKNGQIVFTTFHQSYG 260

Query: 203 YTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDF 262
           Y +FVEG++P  +S    +++ NGVFK+FC KAL N+++S    + L K+  ++E  E+F
Sbjct: 261 YEEFVEGIKPDINSKEVKYKIENGVFKEFCEKALDNYENSILNADELNKKIELKEKFENF 320

Query: 263 IEEAIDEGTKF-KTSGTKNSFSIVENNERTITVEVPANEK-TRLVKLSKAELIDLMDNNI 320
           +   ++      KT G   +F +V+ N++T+ +     E+      LS +  ++L+    
Sbjct: 321 LNWLLETNEPIGKTKG--GNFFVVDINDKTVMIYSEGVERFDGNFNLSISIFMELLKCKD 378

Query: 321 SVKSGKDI-QAHFHRKHRTQQDSYIFVLYNIIKK-QAAKKPSVEVSKVDTKN------YV 372
              +  ++ +  F+R +  +  +Y F   N++KK +A +K SV   + +  N      YV
Sbjct: 379 EFNNAAEMFKKVFNRDYADRTHTYYF---NLVKKFKAYEKQSVAKIENNKNNDNSLKPYV 435

Query: 373 FIIDEINRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFKDGFFVPENV 429
            IIDEINRG++SKIFGEL   I+P  R    E  KV   Y          K  F VP+NV
Sbjct: 436 IIIDEINRGNVSKIFGELITLIEPSKRIGVEEELKVTLPYS---------KKEFGVPKNV 486

Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLD--ELSCVEEAKETMERLNKAI 487
           YIIGTMN  DRS+ ++D A+RRRF ++E+ P+ ++  +D   ++  E  K    R+   +
Sbjct: 487 YIIGTMNTADRSITSLDTALRRRFEFIEMMPDVSKLSMDCEGINLQELLKAINTRIEYLL 546

Query: 488 EETEGLGSAYMI 499
           +  + +G A+ I
Sbjct: 547 DREKTIGHAFFI 558
>gi|21232164|ref|NP_638081.1| McrB-related protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66767707|ref|YP_242469.1| McrB-related protein [Xanthomonas campestris pv. campestris str.
           8004]
 gi|21113917|gb|AAM42005.1| McrB-related protein [Xanthomonas campestris pv. campestris str.
           ATCC 33913]
 gi|66573039|gb|AAY48449.1| McrB-related protein [Xanthomonas campestris pv. campestris str.
           8004]
          Length = 842

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 136/477 (28%), Positives = 211/477 (44%), Gaps = 114/477 (23%)

Query: 163 NLVLTGAPGTGKTFMAQAIAKEMGCSD-----------------------DEMA------ 193
           N +L G PGTGKT+  +AI K +   D                       DE+A      
Sbjct: 333 NQILFGPPGTGKTY--EAIEKALEILDPSFLLQLGDDESNERRRALKRRYDELAKEGLVQ 390

Query: 194 FVQFHPSYDYTDFVEGLRPVRDSD--NFGFELRNGVFKDFCAKALQNF--KDSEKPIE-- 247
           FV FH S+ Y +FVEGL    D D     +E+ +GVFK+ C  A      +  + P+E  
Sbjct: 391 FVTFHQSFSYENFVEGLSASSDPDTKQVRYEVEDGVFKELCESARTRLVRRSDDAPLELS 450

Query: 248 --RLQKEGSVREILEDFI-EEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANE---- 300
             R+ K      I E  I EE +++G      G    FS  ++ E    +   + E    
Sbjct: 451 GRRIWKLSLGDSITEGHIFEECMEKGLALMGFGNNADFSQCQSREDIQKMFAASGEPLSL 510

Query: 301 --------KTRLVKLSKAELIDLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIK 352
                   KT + ++   +LI + + N+  ++  +I   +    R   DS  +     ++
Sbjct: 511 GAYPITAIKTFVCQMKLGDLIVVSEGNLKFRAIGEITGDYQLLPR---DSDTYSQARPVR 567

Query: 353 KQAAKKPSV-----------------------------EVSKVDT------KNYVFIIDE 377
                KP++                             E+ K +       + +V IIDE
Sbjct: 568 WLRGYKPALPYGALMENRFSQMTVYELRAGSIDHDKFRELLKSECIATGADRPHVLIIDE 627

Query: 378 INRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KDGFFVPENVYIIGTMN 436
           INRG++S+IFGEL   I+P  R    +        +E   P+ KD F VP+NVY+IGTMN
Sbjct: 628 INRGNVSRIFGELITLIEPSKRSGAAEA-------LEVLLPYSKDPFSVPDNVYLIGTMN 680

Query: 437 DIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAK----ETMERLNKAIEETEG 492
             DRS+  +D A+RRRF +VE+ P       D+L+ V+ A+      +E +N+ IE    
Sbjct: 681 TADRSLAGLDIALRRRFDFVEMAPRP-----DKLTGVKVAEIDISAVLETMNRRIEVL-- 733

Query: 493 LGSAYMIGPAYFRKLGENGDDFDKL---WKMNIEPLLREY-LRGFRKTNEIMNQLRE 545
           L   + +G AYF  L EN +D  +L   ++  I PLL+EY    +++   I+N  R+
Sbjct: 734 LDREHRLGHAYFMSL-ENSNDLSRLSNIFRQQIIPLLQEYFFEDWQRIAWILNDHRK 789
>gi|15791527|ref|NP_281350.1| putative endonuclease [Campylobacter jejuni subsp. jejuni NCTC
           11168]
 gi|112359526|emb|CAL34310.1| putative endonuclease [Campylobacter jejuni subsp. jejuni NCTC
           11168]
          Length = 783

 Score =  137 bits (345), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 122/424 (28%), Positives = 216/424 (50%), Gaps = 47/424 (11%)

Query: 163 NLVLTGAPGTGKTFMA-----QAIAKEMGCSDDEMA------------FVQFHPSYDYTD 205
           N +L G PGTGKT+       + + + +   D++ A            F  FH SY Y +
Sbjct: 326 NQILYGPPGTGKTYHTIDKALEILGENLESRDEKKAKFDEYVRKGQIVFTTFHQSYGYEE 385

Query: 206 FVEGLRPVRDSDN----FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILED 261
           FVEG++P+ D+D       +++++G+FK+ C K+L+N+  S +    +  +  + E    
Sbjct: 386 FVEGIKPIIDNDENSQEVKYDVKDGIFKELCDKSLKNYILSMQNENEIDLDKLIFEFANY 445

Query: 262 FIEEAIDEGTKFKTSGTKNSFSIVENNE---RTITVEVPANEKTRL-VKLSKAELIDLMD 317
             ++ +++G +F      +   I+ N +   R+ ++         L + + K + ++   
Sbjct: 446 INQDFLNKGNEFPLENKVSIKKILLNFKDEYRSFSLGGSIKSPQSLTIDIIKRDYLNF-- 503

Query: 318 NNISVKSGKDIQAHFHRKHRTQQDS-YIFVLYNIIKK-QAAKKPSVEVSKVDTKNYVFII 375
            N  + S KDI+  +  +     ++ Y F+ YN +K+ +  +    ++ K   K+Y+ II
Sbjct: 504 KNKKILSFKDIKPKYDSQSDYHGNAIYYFMFYNKLKEFENIQNEKFKIKKEILKSYIIII 563

Query: 376 DEINRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFKDGFFVPENVYII 432
           DEINRG++SKIFGEL   I+P  R    E  KV   Y           + F VP+NVYII
Sbjct: 564 DEINRGNVSKIFGELITLIEPSKRIGEKEELKVTLPYSG---------EKFGVPKNVYII 614

Query: 433 GTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEG 492
           GTMN  DRS+ ++D A+RRRF +VE+ P+ ++  +D        +E ++ +N  IE    
Sbjct: 615 GTMNTADRSITSLDTALRRRFEFVEMMPDVSKLSMDCEGI--NLQELLKAINTRIEYL-- 670

Query: 493 LGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL-RGFRKTNEIMNQLREAYVGEK 551
           L     IG A+F  + EN +D  K+++  I PLL+EY    +   N ++N     +  +K
Sbjct: 671 LDREKTIGHAFFVSV-ENLEDLKKVFQNKIIPLLQEYFYNDYALINAVLNDNDMIFEDKK 729

Query: 552 EEEH 555
           ++++
Sbjct: 730 DDKY 733
>gi|34540720|ref|NP_905199.1| McrBC restriction endonuclease system, McrB subunit, putative
           [Porphyromonas gingivalis W83]
 gi|34397034|gb|AAQ66098.1| McrBC restriction endonuclease system, McrB subunit, putative
           [Porphyromonas gingivalis W83]
          Length = 571

 Score =  136 bits (343), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 106/345 (30%), Positives = 165/345 (47%), Gaps = 61/345 (17%)

Query: 147 PTRKYAK---YIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDD------------- 190
           P  +Y++   Y +LLE  KN++L GAPGTGKT+   +IA  M C+ +             
Sbjct: 142 PIEEYSQLKEYAQLLESKKNIILQGAPGTGKTYTTASIAVHM-CNKNFTDYTDHSKVIEE 200

Query: 191 --------EMAFVQFHPSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDS 242
                   ++AF  FH S DY DFVEGL+P   S+N  + + NG+FK  C +A       
Sbjct: 201 YERLRDTGQIAFCTFHQSMDYEDFVEGLKPEVKSNNVEYNVENGIFKSICEQA------- 253

Query: 243 EKPIERLQKEGSVREILEDFIE--EAIDEGTKFKTSGTKNSFSI--VENNERTITVEVPA 298
                + ++E  +   ++ +++  +  +   K  T   ++   +  +E N+   T     
Sbjct: 254 -----KTKEEADIITCIDKYLQSIKGYENKKKIPTISGRSDLWVWWIEGNDTIST----- 303

Query: 299 NEKTRLVKLSKAELIDLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKK 358
             ++ + K  K E   L   NI     + I        R    ++I          A KK
Sbjct: 304 --RSAISKSEKGEQYSLSPLNIEKVKLQAIGEAIENNWRQYAQAFI---------NAVKK 352

Query: 359 PSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDP 418
                 ++  K YV IIDEINRG++SKIFGEL   ++   R   G  +    ++I    P
Sbjct: 353 EYQLDKQISDKPYVLIIDEINRGNVSKIFGELITLLEADKRSGAGSDSNHCISLIL---P 409

Query: 419 F-KDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPND 462
           + K+ F VP N+YIIGTMN  DRS   +D+A+RRRF++V +  +D
Sbjct: 410 YSKENFSVPSNLYIIGTMNTTDRSTGTIDYAVRRRFAFVTLKSSD 454
>gi|86153849|ref|ZP_01072052.1| McrBC restriction endonuclease system, McrB subunit, putative
           [Campylobacter jejuni subsp. jejuni HB93-13]
 gi|85842810|gb|EAQ60022.1| McrBC restriction endonuclease system, McrB subunit, putative
           [Campylobacter jejuni subsp. jejuni HB93-13]
          Length = 773

 Score =  134 bits (338), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 122/407 (29%), Positives = 204/407 (50%), Gaps = 57/407 (14%)

Query: 163 NLVLTGAPGTGKTFMA-----QAIAKE----MGCSDD---------------EMAFVQFH 198
           N +L G+PGTGKT+       + I+KE    +   DD               ++ F  FH
Sbjct: 326 NQILYGSPGTGKTYHTIDKALEIISKEEKIQIPSEDDRINRKKIFDEYVKNGQIVFTTFH 385

Query: 199 PSYDYTDFVEGLRPVRDSDN----FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGS 254
            SY Y +FVEG++P+ D+D       +++++G+FK+ C K+L+N+  S +    +  +  
Sbjct: 386 QSYGYEEFVEGIKPIIDNDENSQEVKYDVKDGIFKELCDKSLKNYILSMQNENEIDLDKL 445

Query: 255 VREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELID 314
           + E      ++ +++G +F      +   I+ N +     E  +      +K  ++  ID
Sbjct: 446 IFEFANYINQDFLNKGNEFPLENKVSIKKILLNFKD----EYRSFSLGGSIKSPQSLTID 501

Query: 315 LMD------NNISVKSGKDIQAHFHRKHRTQQDS-YIFVLYNIIKK-QAAKKPSVEVSKV 366
           ++        N  + S KDI+  +  +     ++ Y F+ YN +K+ +  +    ++ K 
Sbjct: 502 IIKRDYLNFKNKKILSFKDIKPKYDSQSDYHGNAIYYFMFYNKLKEFENIQNEKFKIKKE 561

Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFKDGF 423
             K+Y+ IIDEINRG++SKIFGEL   I+P  R    E  KV   Y             F
Sbjct: 562 ILKSYIIIIDEINRGNVSKIFGELITLIEPSKRIGEKEELKVTLPYSG---------KEF 612

Query: 424 FVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERL 483
            VP+NVYIIGTMN  DRS+ ++D A+RRRF ++E+ P+ ++  +D        +E ++ +
Sbjct: 613 GVPKNVYIIGTMNTADRSITSLDTALRRRFEFIEMMPDVSKLSIDCEGI--NLQELLKAI 670

Query: 484 NKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
           N  IE    L     IG A+F  + EN +   K++K  I PLL+EY 
Sbjct: 671 NTRIEYL--LDREKTIGHAFFISV-ENLESLKKVFKNRIIPLLQEYF 714
>gi|32266942|ref|NP_860974.1| putative endonuclease [Helicobacter hepaticus ATCC 51449]
 gi|32262994|gb|AAP78040.1| putative endonuclease [Helicobacter hepaticus ATCC 51449]
          Length = 670

 Score =  134 bits (337), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 108/367 (29%), Positives = 208/367 (56%), Gaps = 31/367 (8%)

Query: 191 EMAFVQFHPSYDYTDFVEGLRPVRDS-DNFGFELRNGVFKDFCAKALQNFKDSEKPIERL 249
           ++AF+ FH S+ Y +F+EG++P  D+  N  +E++NG+FK+ C +AL+N+++ +    + 
Sbjct: 257 QIAFITFHQSFSYEEFIEGIKPNTDNPQNMTYEVQNGIFKEICEEALKNYQEHQISNNKT 316

Query: 250 QK-EGSVREILEDF---IEEAIDEG--TKFKTSGTKNSFSIVENNE-RTITVEVPANEKT 302
           +  + + +EI + +   +++ +D G    F       S +I +N E ++I++ V  +   
Sbjct: 317 RDLQINAKEIFQSYALELKQKLDNGESINFLNKMKIQSVNINQNGEIKSISIGVDESPFQ 376

Query: 303 RLVK-LSKAELIDLMDNNISVKSGKDIQAHFHRKHRTQQDS-YIFVLYNIIKK---QAAK 357
            L + +   + ++  +N I  K+ KDI+  +  + +   ++ Y F LY  +++      K
Sbjct: 377 SLTQEIISRDYLNFKNNKI--KTYKDIKPRYESQSQWHGNAIYYFELYKKLQEFEETEYK 434

Query: 358 KPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDS 416
           +    + KV  K Y+ IIDEINRG+ISKI GEL   ++P  R G + +++          
Sbjct: 435 QDFKPMQKVSLKPYILIIDEINRGNISKILGELITLLEPSKRIGSKEELSVTL------- 487

Query: 417 DPF-KDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEE 475
            P+ K+ F VP+N+YIIGTMN  DRS+  +D A+RRRF ++E+ P+ T  +L++     +
Sbjct: 488 -PYGKENFGVPKNLYIIGTMNTADRSIALLDTALRRRFEFIEMMPDFT--LLNKDCEGMD 544

Query: 476 AKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL-RGFR 534
            +E ++++N  IE    L   + IG ++F ++ ++ ++   ++   I PLL+EY    + 
Sbjct: 545 LQELLQKMNARIEFL--LDREHTIGHSFFMEI-QSINELKGVFTKKIIPLLQEYFYEDYA 601

Query: 535 KTNEIMN 541
           K + ++N
Sbjct: 602 KIDAVLN 608
>gi|57640944|ref|YP_183422.1| putative 5-methylcytosine restriction system, GTPase subunit
           [Thermococcus kodakarensis KOD1]
 gi|57159268|dbj|BAD85198.1| putative 5-methylcytosine restriction system, GTPase subunit
           [Thermococcus kodakarensis KOD1]
          Length = 828

 Score =  133 bits (335), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 115/404 (28%), Positives = 201/404 (49%), Gaps = 61/404 (15%)

Query: 157 LLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
           LL++ K ++L G PGTGKTFMA+   + +   +   +FV FH SY Y DFVEG RP+   
Sbjct: 414 LLDEYKQVILYGPPGTGKTFMARMFLRCINVPNTHYSFVTFHKSYSYEDFVEGYRPLTRE 473

Query: 217 DNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAI--DEGTKFK 274
               + +++G+FK    KA                   + E++ D I+E +  +  T+ +
Sbjct: 474 GKIEYAVKDGIFKKLAIKA-------------------IYELMSDTIKEQLLPNYETQIE 514

Query: 275 TSGTKNSFSIVENN---ERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSGK----- 326
               K ++  + ++    R I  ++  ++K R+     AE      +++  K+ K     
Sbjct: 515 NHAKKIAWERLISDLKANRIIRNDIRVDDKGRMYV---AEYTIYDGDDLITKAEKLRELL 571

Query: 327 -DIQAHFHR-KHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKN--------YVFIID 376
            D+++ F   K   + +   F++   +    +K  +  +S  D  N        +  +ID
Sbjct: 572 GDLESIFMTYKEEAEYEGVKFLVQRFLGILDSKISNGALSTEDINNLFTNNPKKFYLVID 631

Query: 377 EINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KDGFFVPENVYIIGTM 435
           EINR D+S +FGEL   ++   R     ++   +N I    P+ ++ F VP N+YIIGTM
Sbjct: 632 EINRADVSHVFGELITLLEKDKR-----ISEDNKNPIIVQLPYSRELFAVPSNLYIIGTM 686

Query: 436 NDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVE-EAKETMERLNKAIEETEGLG 494
           N  DR +  +D A+RRRF+++EV P+   ++L+EL+       + ++ +N  I  ++G  
Sbjct: 687 NSADRGISLLDVALRRRFAFLEVQPD--YNVLEELNLYGIRIDKLLKAINDRIIHSKG-S 743

Query: 495 SAYMIGPAYFRKLGE---NGDDFD------KLWKMNIEPLLREY 529
             Y IG +YF +L E   NG++ D      ++W   I PLL++Y
Sbjct: 744 KDYQIGHSYFLELKEALSNGNEDDALQKLIRIWYNRILPLLQDY 787
>gi|146294002|ref|YP_001184426.1| ATPase associated with various cellular activities, AAA_5
           [Shewanella putrefaciens CN-32]
 gi|145565692|gb|ABP76627.1| ATPase associated with various cellular activities, AAA_5
           [Shewanella putrefaciens CN-32]
          Length = 900

 Score =  132 bits (332), Expect = 7e-29,   Method: Composition-based stats.
 Identities = 118/395 (29%), Positives = 188/395 (47%), Gaps = 63/395 (15%)

Query: 163 NLVLTGAPGTGKTFM---AQAIAKEMG----------------CSDDEMAFVQFHPSYDY 203
           N +  G PGTGKT++   A   A + G                 +   + FV FH SY Y
Sbjct: 467 NQIFFGPPGTGKTYITIEAAVKAADPGYVWEDRDDLKAHYDRLVNSGRIRFVTFHQSYSY 526

Query: 204 TDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFI 263
            DFVEGL          +E + GVF+      L N     +  E  +   S  +  + FI
Sbjct: 527 EDFVEGLSASATDGEISYEKKLGVFRK-----LVNAAREYRTTEVRKASESFSDCWQAFI 581

Query: 264 EEAIDE---GTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNI 320
           ++ +DE   G   KT  ++   + VE+N    T+    N+   +  L+ + +  + D   
Sbjct: 582 KQ-LDESQNGVAIKTKRSQFVITEVEDN----TIRFDKNQGNSVHTLALSTVQAVFDGQR 636

Query: 321 SVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINR 380
           +V  G  +Q ++        D+ I  + ++ ++ +A       ++V  +NYV +IDEINR
Sbjct: 637 TVHGG--LQPYY--------DALIAHIRDLGQQLSA-------TEVVRQNYVLVIDEINR 679

Query: 381 GDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFK-DGFFVPENVYIIGTMNDID 439
           G+IS+IFGEL   I+P  R    +        +E + P   D F VP+N++IIGTMN  D
Sbjct: 680 GNISRIFGELITLIEPSKRIGAAEA-------LEVTLPLTGDKFGVPDNLHIIGTMNTAD 732

Query: 440 RSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEE--TEGLGSAY 497
           RS+  +D A+RRRF++VE+ P     +LD L    +    + ++ + + +  T  L   +
Sbjct: 733 RSLAGLDLALRRRFTFVEMPPK--PELLDGLVVAGDDGIDIGQMLRVMNQRITALLDRDH 790

Query: 498 MIGPAYFRKLGENG--DDFDKLWKMNIEPLLREYL 530
            IG AYF  L +N   D    ++  NI PLL+EY 
Sbjct: 791 CIGHAYFMPLQDNPSLDLLADIFAQNILPLLQEYF 825
>gi|124004104|ref|ZP_01688951.1| 5-methylcytosine-specific restriction enzyme B [Microscilla marina
           ATCC 23134]
 gi|123990683|gb|EAY30163.1| 5-methylcytosine-specific restriction enzyme B [Microscilla marina
           ATCC 23134]
          Length = 433

 Score =  131 bits (329), Expect = 1e-28,   Method: Composition-based stats.
 Identities = 120/400 (30%), Positives = 188/400 (47%), Gaps = 51/400 (12%)

Query: 162 KNLVLTGAPGTGKTFMAQAIAKEMGCSDD-----------------------EMAFVQFH 198
           KN++L G PGTGKT+     A  M  +                         ++AF+ FH
Sbjct: 34  KNMILYGPPGTGKTYQTVNYALAMIENKSLEELAEEPRADLIKRFNAYKEKLQIAFITFH 93

Query: 199 PSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKD-SEKPIERLQKEGSVRE 257
            SY Y DF++GLRP  +     FE R+G+FK    +A +NF   S++ + + + E  + E
Sbjct: 94  QSYSYEDFIQGLRPNTNMGTLHFERRDGIFKRMADRARKNFDTFSQQQVFKKRFEDLLNE 153

Query: 258 ILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAEL-IDLM 316
           +L   I+   +E   +  S  +   SI+       T+      K  ++K    E+ ID +
Sbjct: 154 LLIKNIDPETEEIEVYLDSSHRIYQSIIIFEMTDTTLFYKRRTKRDIIKNESKEMNIDTL 213

Query: 317 DNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIID 376
            N       +D+      K    Q  Y  V+  + + +   KP  E S    +NYV IID
Sbjct: 214 KNIY-----EDVT---FVKDAINQKYYEAVVQAVRQYEENHKP--EKSLQQLQNYVVIID 263

Query: 377 EINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMN 436
           EINR +IS++FGEL   I+   R           N +  + P  + F VP N+YI+GTMN
Sbjct: 264 EINRANISRVFGELITLIESDKR-------YGSDNGLSVTLPSGENFTVPANLYILGTMN 316

Query: 437 DIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEGLGSA 496
             DRS+  +D A+RRRF +  + P+ +      L   +E K+  + LN+ I + E     
Sbjct: 317 TADRSIALIDTALRRRFVFEAIYPDAS------LIADKEVKKVFKDLNEKILQ-EKNSPD 369

Query: 497 YMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKT 536
           Y+IG A+F  +G+  +D  +++   + PLL EY    R T
Sbjct: 370 YLIGQAFF--IGKAMEDLPQVFNYQLIPLLLEYFPNRRDT 407
>gi|85711475|ref|ZP_01042533.1| hypothetical protein OS145_08853 [Idiomarina baltica OS145]
 gi|85694627|gb|EAQ32567.1| hypothetical protein OS145_08853 [Idiomarina baltica OS145]
          Length = 678

 Score =  130 bits (326), Expect = 3e-28,   Method: Composition-based stats.
 Identities = 121/399 (30%), Positives = 180/399 (45%), Gaps = 62/399 (15%)

Query: 158 LEQNKNLVLTGAPGTGKTF-------------MAQAIAKEMGCSDDEMA------FVQFH 198
           + Q  N +L G PGTGKTF              + A   E+     E+       FV FH
Sbjct: 246 VSQPLNQILFGPPGTGKTFTTIERAVRAAEPNFSWANRDELKAKYQELIREGRIRFVTFH 305

Query: 199 PSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREI 258
            S+ Y DFVEGL    D +   +E R G+F+     A ++     +  E      S  + 
Sbjct: 306 QSFSYEDFVEGLTAHTDDEKLVYEKRLGIFRQIVRDAKEH-----QNTEVKNPTNSFSDC 360

Query: 259 LEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDN 318
            + F+ E  D     + S  ++ F I E +  TI  +   N+   +  LS + L  + + 
Sbjct: 361 WDAFLTEFEDHPEGVQISMKRSKFIITEVDGNTIRFD--KNQGDSVNTLSVSTLEAIFNG 418

Query: 319 NISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEI 378
                 G        + +     S++  L   + K+A K+          +NYV IIDEI
Sbjct: 419 ERRFNGGL-------KPYYQSLISHLESLGEQLDKKAVKR----------QNYVLIIDEI 461

Query: 379 NRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFK-DGFFVPENVYIIGTMND 437
           NRG+IS+IFGEL   I+P  R       +     +E + P   D F VP+N+YIIGTMN 
Sbjct: 462 NRGNISRIFGELITLIEPSKR-------SGTTEALEVTLPLTGDRFSVPDNLYIIGTMNT 514

Query: 438 IDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEE--TEGLGS 495
            DRS+  +D A+RRRF ++E+ P     + +EL  V      +E++   I    T  L  
Sbjct: 515 ADRSLAGLDLALRRRFDFIEMPP-----LPEELKGVSVDGINVEKMLDVINRRITALLDK 569

Query: 496 AYMIGPAYFRKLGENGD----DFDKLWKMNIEPLLREYL 530
            + IG AYF  L +  D    D  +++K  I PLL+EY 
Sbjct: 570 DHCIGHAYFIHLKDRSDVALTDLAEIFKQKIIPLLQEYF 608
>gi|45358318|ref|NP_987875.1| ATP/GTP-binding site motif A (P-loop) [Methanococcus maripaludis
           S2]
 gi|44921076|emb|CAF30311.1| ATP/GTP-binding site motif A (P-loop) [Methanococcus maripaludis
           S2]
          Length = 604

 Score =  126 bits (317), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 125/401 (31%), Positives = 195/401 (48%), Gaps = 78/401 (19%)

Query: 163 NLVLTGAPGTGKTF--MAQAIA--------------------KEMGCSDDEMAFVQFHPS 200
           N +L G PGTGKT+  + +A+A                    KE G    ++ F+ FH S
Sbjct: 165 NTILYGPPGTGKTYRVIEEAVAIIDGKIPKGRVNLVKRYKELKERG----QIEFITFHQS 220

Query: 201 YDYTDFVEGLRPV---RDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVRE 257
           Y Y DF+EG++PV    D ++  +++ +G+FK    KA++  K S    E+  K      
Sbjct: 221 YCYEDFIEGIKPVLENSDENSIEYKIEDGIFKKMVNKAIE-VKSSSNFDEKYAK------ 273

Query: 258 ILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMD 317
            +ED +E+   +G + +T   K  F +  N+  T  V +P  E    + ++K  L D + 
Sbjct: 274 FVEDVLEQ---DGIELETLAQKKPFRVRINSNET-AVAIPKTEAATRLSVTKEMLRDYIV 329

Query: 318 NNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDE 377
           N+       +IQ    + +      Y+   Y I         +VE +    K +V IIDE
Sbjct: 330 ND-------NIQGW--KPYTPAIGEYLKNKYGI---------TVENTDNTNKKFVLIIDE 371

Query: 378 INRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPF-KDGFFVPENVYIIGTM 435
           INRG+ISKIFGEL   I+P  R GE  ++            P+ K  F +P N+YI+GTM
Sbjct: 372 INRGNISKIFGELITLIEPDKRIGELNELTVTL--------PYSKKDFGLPSNLYILGTM 423

Query: 436 NDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEGLGS 495
           N  DRS+  +D A+RRRF + E+ P D + +  ++  + +    +E +NK IE     G 
Sbjct: 424 NTADRSIALVDTALRRRFEFNEMMP-DVKKLGFDIKGI-QIDIMLESINKRIEYFR--GR 479

Query: 496 AYMIGPAYFRKLGENGDD---FDKL---WKMNIEPLLREYL 530
            + IG AYF  L    ++   F KL   ++  + PLL+EY 
Sbjct: 480 DHTIGHAYFMDLINETNEQVRFKKLQEIFQYKVIPLLQEYF 520
>gi|78060551|ref|YP_367126.1| GTPase subunit of restriction endonuclease-like [Burkholderia sp.
           383]
 gi|77965101|gb|ABB06482.1| GTPase subunit of restriction endonuclease-like [Burkholderia sp.
           383]
          Length = 696

 Score =  125 bits (315), Expect = 5e-27,   Method: Composition-based stats.
 Identities = 130/484 (26%), Positives = 205/484 (42%), Gaps = 113/484 (23%)

Query: 163 NLVLTGAPGTGKTF---------------------MAQAIAKEMGCSD------DEMA-- 193
           N +L G PGTGKT+                     ++ A A  +          DE+A  
Sbjct: 175 NTILYGPPGTGKTYATIDETLRVLDPELLAQYPEPVSNAAADNLNRRSALKTRFDELAQA 234

Query: 194 ----FVQFHPSYDYTDFVEGLRPVRDSD-NFGFELRNGVFKDFC-----AKALQNFKDSE 243
               FV FH S+ Y DFVEG+R V  S+    +++ +GVFK  C     A A     ++E
Sbjct: 235 GRVRFVTFHQSFSYEDFVEGIRAVSHSNGQISYQVVDGVFKALCDRARGAAATNTSVETE 294

Query: 244 KPIE----RLQK------EGSVREILEDFIEEA---IDEGTKFKTSGTKN----SFSIVE 286
            PI+    R+ K      EG    + +D I++    +  G     +G  +    S  + E
Sbjct: 295 PPIKLSGRRIWKMSLGAAEGDDAYVYDDCIKQGMALLGYGYALDYTGCVSRADVSARMRE 354

Query: 287 NNERTITVEVPANEKTRLVKLSK-AELIDLMDNNISVKSGKDIQAHFHRKHRTQQDSY-- 343
           +  +    +  A      + + K  +L+ + D N+  ++  +I   +    R + D Y  
Sbjct: 355 HGHQPDVNDYAATAVNIFINVMKMGDLLVVTDGNLKFRALGEITGPYRHIEREEGDDYRQ 414

Query: 344 -------------------------IFVLY-------NIIKKQAAKKPSVEVSKVDTKNY 371
                                       LY       ++ K  A   P+   + VD   Y
Sbjct: 415 SRAVRWLRSYEPSLAFGELMNNRFSQMTLYELRDGSIDMTKLDALLAPAPPPTGVDATPY 474

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
           V IIDEINRG++S+IFGEL   I+P  R   G        +     PF     VP+NVY+
Sbjct: 475 VLIIDEINRGNVSRIFGELITLIEPSKRA--GNPEALTVTLPYSQTPFT----VPDNVYL 528

Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMER----LNKAI 487
           +GTMN  DRS+  +D A+RRRF++ E+ P       D L  V+ A   + R    +N+ I
Sbjct: 529 LGTMNTADRSLTGLDIALRRRFTFREMAPRP-----DFLDDVDVAGVNIGRMLAVMNERI 583

Query: 488 EETEGLGSAYMIGPAYFRKLGENG----DDFDKLWKMNIEPLLREY-LRGFRKTNEIMNQ 542
           E    L   +M+G AYF  L   G    +   ++++  + PLL+EY    + +   ++N 
Sbjct: 584 ELL--LDRDHMLGHAYFMPLAAEGGNTLETLARIFRHQVFPLLQEYFFEDWERIIWVLND 641

Query: 543 LREA 546
            R+A
Sbjct: 642 HRKA 645
>gi|148926310|ref|ZP_01809994.1| putative endonuclease [Campylobacter jejuni subsp. jejuni CG8486]
 gi|145844702|gb|EDK21807.1| putative endonuclease [Campylobacter jejuni subsp. jejuni CG8486]
          Length = 531

 Score =  125 bits (313), Expect = 9e-27,   Method: Composition-based stats.
 Identities = 121/395 (30%), Positives = 189/395 (47%), Gaps = 66/395 (16%)

Query: 163 NLVLTGAPGTGKTFMA-----QAIAKEMGCSDDEMA------------FVQFHPSYDYTD 205
           N +L G+PGTGKT+       + + + +   D++ A            F  FH SY Y +
Sbjct: 117 NQILYGSPGTGKTYHTIDKALEILGENLESRDEKKAKFDEYVKNGQIVFTTFHQSYGYEE 176

Query: 206 FVEGLRPVRDSDN----FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILED 261
           FVEG++P  DS+       +E+++G+FK+ C KAL+N +DS K                +
Sbjct: 177 FVEGIKPHIDSEENSKEIKYEIKDGIFKELCEKALEN-RDSIKNF--------------N 221

Query: 262 FIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNIS 321
           F  + + E  K   +  +  F +  N + +I      N KT  +K       D+  N+  
Sbjct: 222 FYIDKLKEKVKIDDNNPEKYFEL-PNTKYSIQYR---NGKTFRIKFD-----DMSKNHKD 272

Query: 322 VKSGKDIQAHFHRKHRTQQ---DSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEI 378
                D     ++     +    +Y+  + N +K Q  +    +  KV+   Y+ IIDEI
Sbjct: 273 YPVSIDNIEKLYKTSNIDEIYNSAYVRAILNYLKLQGLEDYKEKDEKVNLP-YIIIIDEI 331

Query: 379 NRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTM 435
           NRG++SKIFGEL   I+   R    E  KV   Y             F VP+NVYIIGTM
Sbjct: 332 NRGNVSKIFGELITLIEASKRIGEKEELKVTLPYSG---------KEFGVPKNVYIIGTM 382

Query: 436 NDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEGLGS 495
           N  DRS+ ++D A+RRRF ++E+ P+ ++  +D        +E ++ +N  IE    L  
Sbjct: 383 NTADRSITSLDTALRRRFEFIEMMPDVSKLSMDCEGI--NLQELLKAINTRIEYL--LDR 438

Query: 496 AYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
              IG A+F  + EN +D  K++K  I PLL+EY 
Sbjct: 439 EKTIGHAFFISV-ENLEDLKKVFKNKIIPLLQEYF 472
>gi|90410149|ref|ZP_01218166.1| GTPase subunit of restriction endonuclease [Photobacterium
           profundum 3TCK]
 gi|90329502|gb|EAS45759.1| GTPase subunit of restriction endonuclease [Photobacterium
           profundum 3TCK]
          Length = 846

 Score =  123 bits (308), Expect = 3e-26,   Method: Composition-based stats.
 Identities = 121/416 (29%), Positives = 187/416 (44%), Gaps = 71/416 (17%)

Query: 146 EPTRKYAKYIELLEQNKNLVLTGAPGTGKTF-------------MAQAIAKEMGCSDDEM 192
           EPT      IE +    N +L G PGTGKT+                A   E+    DE+
Sbjct: 364 EPTMN----IESVATPLNQILYGPPGTGKTYHTIEASVKAAEPNFTFANRNELKGKYDEL 419

Query: 193 A------FVQFHPSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPI 246
                  FV FH SY Y +FVEGL    + D   +  ++G+FK    +A     D  +  
Sbjct: 420 VMANRIRFVTFHQSYGYEEFVEGLSAKTEGDQVSYYEKDGIFKVISEEA-----DKYRET 474

Query: 247 ERLQKEGSVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVK 306
           + ++ +     +   FI E     +  + +  +  F++ + +  TI  E    + T    
Sbjct: 475 KTVKGDSDFDSLWSYFIAELSQIESGIRVNTIRTFFTVTDVDNNTIRFEKDKGDST---- 530

Query: 307 LSKAELIDLMDNNISVKSGKDIQAHFHRKHRTQQ--DSYIFVLYNIIKKQAAKKPSVEVS 364
                      +++SVK+   ++A F+R+   +   + Y   L   IK  A      E  
Sbjct: 531 -----------HSLSVKT---LKAIFNREREIKGGLNPYYSAL---IKHLAIYSNRTEEV 573

Query: 365 KVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFF 424
               KN+V +IDEINRG+ISKIFGEL   I+P    +R     Q   ++  +    D F 
Sbjct: 574 HTQRKNFVLVIDEINRGNISKIFGELITLIEPS---KRKGATEQIDVVLPHTG---DNFS 627

Query: 425 VPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVE-EAKETMERL 483
           VP+N++IIGTMN  DRS+  MD A+RRRF +VE+ P     +L  +S    + ++ +  L
Sbjct: 628 VPDNLHIIGTMNTADRSLAMMDTALRRRFDFVEMMPK--PELLSGVSVNGIDLQKLLTVL 685

Query: 484 NKAIEETEGLGSAYMIGPAYFRKLGENGDDFDK---------LWKMNIEPLLREYL 530
           N+ IE        + +G A+F  + E  D  D+         ++K  I PLL EY 
Sbjct: 686 NQRIEVL--YDREHTLGHAFFMTVKEKRDQVDENAAFDELQSVFKNKIIPLLEEYF 739
>gi|57240286|ref|ZP_00368235.1| endonuclease, probable [Campylobacter lari RM2100]
 gi|57018627|gb|EAL55400.1| endonuclease, probable [Campylobacter lari RM2100]
          Length = 638

 Score =  121 bits (304), Expect = 1e-25,   Method: Composition-based stats.
 Identities = 81/206 (39%), Positives = 125/206 (60%), Gaps = 21/206 (10%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           Y FI DEINR ++S++FGEL +A++  YRGE+GK+ TQY ++  D D     F+VPENV+
Sbjct: 438 YFFIADEINRAELSRVFGELLYALE--YRGEKGKIKTQYASMRNDED-----FYVPENVF 490

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDEL--SCVEEAKETMERLNKAIE 488
            +GTMND+D+S+++ D A+RRRF W E+   D   + DE+  + +EE  +  ++LN  I 
Sbjct: 491 FLGTMNDLDKSIDSFDLALRRRFIWQEME-CDYNVIRDEIYANNIEEYAQACKKLNDKI- 548

Query: 489 ETEGLGSAYMIGPAYFRKLGENGD-----DFDKLWKMNIEPLLREYLRGFRKTNEI---M 540
            ++ +G  Y +G +YF K+    D     D  KL+    E LL+EYLR      EI   +
Sbjct: 549 -SKNIGEKYQLGHSYFLKIEFKNDEIKDSDMKKLFSNRFEALLKEYLRSEYSEKEIQKHL 607

Query: 541 NQLREAYVGEK-EEEHSNIPELTDEN 565
           + L++ +V EK  E   N P+  ++N
Sbjct: 608 DGLKKLFVIEKPNEPKPNEPKTNEKN 633

 Score = 72.4 bits (176), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 5/109 (4%)

Query: 154 YIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEMAFVQFHPSYDYTDFVEGLRPV 213
           + +LL+ +KN++  G PGTGKT+      K +  ++++M   QFHPS+ Y DF+EG++P 
Sbjct: 331 FKKLLKTHKNIIFHGIPGTGKTYTIVNNVKNIIKNENQMLITQFHPSFSYEDFIEGIKPA 390

Query: 214 R-DSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILED 261
             ++     EL+NG+F++FC KA    K+ EK      ++G+  E L D
Sbjct: 391 GIENGQLKLELKNGIFREFCDKA----KEEEKGFLEKLEKGNFNEALSD 435
>gi|88597447|ref|ZP_01100682.1| McrBC restriction endonuclease system, McrB subunit, putative
           [Campylobacter jejuni subsp. jejuni 84-25]
 gi|88190508|gb|EAQ94482.1| McrBC restriction endonuclease system, McrB subunit, putative
           [Campylobacter jejuni subsp. jejuni 84-25]
          Length = 591

 Score =  118 bits (296), Expect = 9e-25,   Method: Composition-based stats.
 Identities = 100/323 (30%), Positives = 159/323 (49%), Gaps = 56/323 (17%)

Query: 163 NLVLTGAPGTGKTFMA-----QAIAKEMGCSDDEMA------------FVQFHPSYDYTD 205
           N +L G+PGTGKT+       + + + +   D++ A            F  FH SY Y +
Sbjct: 117 NQILYGSPGTGKTYHTIDKALEILGENLESRDEKKAKFDEYVKNGQIVFTTFHQSYGYEE 176

Query: 206 FVEGLRPVRDSD---NFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDF 262
           FVEG++P  +SD      +++++G+FK+ C KAL+N  D E           + ++ E  
Sbjct: 177 FVEGIKPSLNSDENSQINYKVKDGIFKELCKKALENRDDIE------SFNFYINDLKEKT 230

Query: 263 IEEAIDEGTKFKTSGTKNSFSIVENNERTITV---EVPANEKTRLVKLSKAELIDLMDNN 319
            E+A +    F+   TK  +SI     +T  +   ++  N K   V +   E +    N 
Sbjct: 231 KEDANNPEKYFQLPNTK--YSIQYRGGKTFRIKFDDMSKNHKDYPVSIDNIEKLYKTSNI 288

Query: 320 ISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEIN 379
             + +                 +Y+  + N +K Q  K    +  K++   Y+ IIDEIN
Sbjct: 289 DEIYN----------------SAYVKAILNYLKSQGLKDYKEKDEKINLP-YIIIIDEIN 331

Query: 380 RGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFK-DGFFVPENVYIIGTMNDI 438
           RG++SKIFGEL   I+P  R          +  +E + P+  + F VP+NVYIIGTMN  
Sbjct: 332 RGNVSKIFGELITLIEPSKR-------LGNEEALELTLPYSGEKFGVPKNVYIIGTMNTA 384

Query: 439 DRSVENMDFAMRRRFSWVEVTPN 461
           DRS+ ++D A+RRRF +VE+ PN
Sbjct: 385 DRSITSLDTALRRRFEFVEMMPN 407
>gi|75212130|ref|ZP_00712170.1| COG1401: GTPase subunit of restriction endonuclease [Escherichia
           coli B171]
          Length = 549

 Score =  115 bits (288), Expect = 8e-24,   Method: Composition-based stats.
 Identities = 110/405 (27%), Positives = 180/405 (44%), Gaps = 66/405 (16%)

Query: 162 KNLVLTGAPGTGKTFMAQAIAKEMG---------------------------CSDDEMAF 194
           KN +L G PGTGKT+    IA ++                              D+ + F
Sbjct: 94  KNTILYGPPGTGKTYRTIEIAVQICDPIAYSLQEGKDESEKRRELKKIYDQLIKDNRVRF 153

Query: 195 VQFHPSYDYTDFVEGLRP-VRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
           + FH S+ Y +F+EGLR    D  N  +E++ G+FK  C  A      +++ ++      
Sbjct: 154 ITFHQSFGYEEFIEGLRAETTDDGNVKYEIKAGIFKQICEDAAFGHAGAQEMLD------ 207

Query: 254 SVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELI 313
           S    L++ + E   E    +T   K +F +   ++    +    ++K  L +   A L 
Sbjct: 208 SALTRLQERLSEG--ENITLETQQGK-AFQLTYKSQTNFGIFPSQSKKEDLGQGYNAYLK 264

Query: 314 DLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYN-IIKKQAAKKPSVEVSKVDTKNYV 372
           D+             Q +   + +    SY+  + N +I ++     +  V+    +NYV
Sbjct: 265 DIR------------QVYQDPRAKVHNPSYVRSILNYLINQRYLPLNTQSVASEKKENYV 312

Query: 373 FIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYII 432
            IIDEINRG+ISKIFGEL   I+P  R   G+  +    +   S PF     VP N+Y+I
Sbjct: 313 LIIDEINRGNISKIFGELITLIEPSKRA--GEPESLSVLLPYSSTPFS----VPNNLYLI 366

Query: 433 GTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEG 492
           GTMN  D S+  +D A+RRRF +  + P D   + D +    +    ++ LN  I+    
Sbjct: 367 GTMNTADHSLTALDTALRRRFDFEAMLP-DITVLKDTVIKGIDLPRLLQTLNDRIQVL-- 423

Query: 493 LGSAYMIGPAYFRKLGENGDD-------FDKLWKMNIEPLLREYL 530
               +M+G A+F  + +  +D       F ++ +  I PLL EY 
Sbjct: 424 YDREHMLGHAFFIPVVQAKEDEALAFERFKRIMRNKILPLLEEYF 468
>gi|66046953|ref|YP_236794.1| ATPas [Pseudomonas syringae pv. syringae B728a]
 gi|63257660|gb|AAY38756.1| ATPas [Pseudomonas syringae pv. syringae B728a]
          Length = 517

 Score =  113 bits (283), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 118/426 (27%), Positives = 199/426 (46%), Gaps = 85/426 (19%)

Query: 163 NLVLTGAPGTGKT--------------FMAQAIAKEMGCS---DDEMA-----FVQFHPS 200
           N +  G PGTGKT              F+A+ +          D+ +A     FV FH S
Sbjct: 5   NQIFFGPPGTGKTYATVEATLQILDQPFLAKNLDNRSALKARFDELLAAGDVRFVTFHQS 64

Query: 201 YDYTDFVEGLRPVRDSD-NFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREIL 259
           + Y DFVEGLR   D      +E+ +GVFK  C              E +  E S +   
Sbjct: 65  FSYEDFVEGLRATTDEQGQIRYEVVSGVFKSLC--------------ESIASELSGKY-- 108

Query: 260 EDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNN 319
                 A   G ++ T      + ++  N+  + +E P  +   L       L++ + ++
Sbjct: 109 -----RAFKVGERYGTG-----YKVIRANDDILELEKPKGKNFGLA----MSLLNALADD 154

Query: 320 IS--VKSGKDIQ-AHFHRK-HRTQQDSYIFVLY---------NIIKKQAAKKPSVEVSKV 366
           +S  V S  D+   ++  K   +  D Y+   Y         +++ K+     + EV++ 
Sbjct: 155 VSQGVLSVNDLSTGNWEEKLPNSTYDPYLVKGYRNIVPVLIEHMLSKRNEDFRTAEVAQS 214

Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KDGFFV 425
           + +  V IIDEINRG++S+IFGEL   I+P  R    +        +E + P+ K+ F +
Sbjct: 215 E-RPKVLIIDEINRGNVSRIFGELITLIEPSKRAGASEA-------LEVTLPYSKERFCI 266

Query: 426 PENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEA-KETMERLN 484
           P N+++IGTMN  DRS+  +D A+RRRF+++EV PN    +L+++     A  E +  +N
Sbjct: 267 PSNIHLIGTMNTSDRSLAALDIALRRRFTFIEVPPN--PELLEDIEVDGIAIDELLSVMN 324

Query: 485 KAIEETEGLGSAYMIGPAYFRKLGENGDDFDKL---WKMNIEPLLREY-LRGFRKTNEIM 540
           + I     L   + +G AYF  L E+    ++L   ++  I PLL+EY    +++   ++
Sbjct: 325 QRIAVL--LDQDHCLGHAYFMPL-ESDPTLERLAGIFQEQILPLLQEYFFEDWQRIQWVL 381

Query: 541 NQLREA 546
           N  R+A
Sbjct: 382 NDQRKA 387
>gi|77974092|ref|ZP_00829635.1| COG1401: GTPase subunit of restriction endonuclease [Yersinia
           frederiksenii ATCC 33641]
          Length = 687

 Score =  112 bits (280), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 114/406 (28%), Positives = 180/406 (44%), Gaps = 68/406 (16%)

Query: 162 KNLVLTGAPGTGKTFMA----------QAIAKEMGCSDDE-----------------MAF 194
           KN +L G PGTGKT+             A + + G  ++E                 + F
Sbjct: 229 KNTILYGPPGTGKTYRTIELAVRACEPAAYSLQEGKEENEKRRELKKIYDRLIAEKRVRF 288

Query: 195 VQFHPSYDYTDFVEGLRP-VRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
           + FH S+ Y +F+EGLR    D  N  +E++ G+FK  C  A       ++ ++      
Sbjct: 289 ITFHQSFGYEEFIEGLRAETTDDGNVRYEIKAGIFKQICEDAAFGHAGVQQKLD------ 342

Query: 254 SVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELI 313
              E L    E   + G+    +    +F +   ++ T  +    ++K  L +   A L 
Sbjct: 343 ---EALARLQERLSESGSITLETLQGKAFQLAYKSQTTFGIFPSQSKKEDLGQGYNAYL- 398

Query: 314 DLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAA--KKPSVEVSKVDTKNY 371
                NIS+   ++ QA  H        SY+  + N + KQ      P   VS+   +NY
Sbjct: 399 ----KNISLVY-QNPQAKVHNP------SYVRSILNYLIKQEGLPSNPQESVSE-KRQNY 446

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPF-KDGFFVPENV 429
           V IIDEINRG+ISKIFGEL   I+   R GE   ++           P+    F VP N+
Sbjct: 447 VLIIDEINRGNISKIFGELITLIETSKRAGEPEALSVML--------PYSSSSFSVPNNL 498

Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNKA 486
           Y+IGTMN  DRS+  +D A+RRRF +  + P+ T   E+++  +      +   +R+   
Sbjct: 499 YLIGTMNTADRSLTALDTALRRRFEFEAMLPDITVLKETVVKGIDLPRLLQTLNDRIEVL 558

Query: 487 IEETEGLGSAYMIGPAYFRKLGEN--GDDFDKLWKMNIEPLLREYL 530
            +    LG A+ I P    K  E+   +   ++ +  + PLL EY 
Sbjct: 559 YDREHTLGHAFFI-PVVQVKEDEDLAFERLKRIMRNKVLPLLEEYF 603
>gi|22127668|ref|NP_671091.1| hypothetical protein y3797 [Yersinia pestis KIM]
 gi|21960783|gb|AAM87342.1|AE013982_9 hypothetical [Yersinia pestis KIM]
          Length = 688

 Score =  111 bits (277), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 115/405 (28%), Positives = 181/405 (44%), Gaps = 66/405 (16%)

Query: 162 KNLVLTGAPGTGKTFMA----------QAIAKEMGCSDDE-----------------MAF 194
           KN +L G PGTGKT+             A + + G  ++E                 + F
Sbjct: 230 KNTILYGPPGTGKTYCTIELAVRACEPAAYSLQEGKEENEKRRELKKVYDRLIAEKRVRF 289

Query: 195 VQFHPSYDYTDFVEGLRP-VRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
           + FH S+ Y +F+EGLR    D  N  +E++ G+FK  C  A       ++ ++      
Sbjct: 290 ITFHQSFGYEEFIEGLRAETTDDGNVRYEVKAGIFKQICEDAAFGHAGVQQKLD------ 343

Query: 254 SVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELI 313
              E L    E   + G+    +    +F +   ++ T  +    ++K  L +   A L 
Sbjct: 344 ---EALARLQERLSESGSITLETLQGKAFQLAYKSQTTFGIFPSQSKKEDLGQGYNAYL- 399

Query: 314 DLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAA--KKPSVEVSKVDTKNY 371
                NIS+   ++ QA  H        SY+  + N + KQ      P   VS+   +NY
Sbjct: 400 ----KNISLVY-QNPQAKVHNP------SYVRSILNYLIKQEGLPSNPQESVSE-KRQNY 447

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           V IIDEINRG+ISKIFGEL   I+   R GE   ++     I+  S      F VP N+Y
Sbjct: 448 VLIIDEINRGNISKIFGELITLIETSKRAGEPEALSV----ILPYS---SSSFSVPNNLY 500

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNKAI 487
           +IGTMN  DRS+  +D A+RRRF +  + P+ T   E+++  +      +   +R+    
Sbjct: 501 LIGTMNTADRSLTALDTALRRRFEFEAMLPDITVLKETVVKGIDLPRLLQTLNDRIEVLY 560

Query: 488 EETEGLGSAYMIGPAYFRKLGEN--GDDFDKLWKMNIEPLLREYL 530
           +    LG A+ I P    K  E+   +   ++ +  + PLL EY 
Sbjct: 561 DREHTLGHAFFI-PVVQVKEDEDLAFERLKRIMRNKVLPLLEEYF 604
>gi|16120721|ref|NP_404034.1| hypothetical protein YPO0387 [Yersinia pestis CO92]
 gi|45443526|ref|NP_995065.1| GTPase subunit of restriction endonuclease [Yersinia pestis biovar
           Microtus str. 91001]
 gi|77632991|ref|ZP_00795151.1| COG1401: GTPase subunit of restriction endonuclease [Yersinia
           pestis Angola]
 gi|89103250|ref|ZP_01175836.1| COG1401: GTPase subunit of restriction endonuclease [Yersinia
           pestis biovar Orientalis str. IP275]
 gi|108809887|ref|YP_653803.1| hypothetical protein YPA_3897 [Yersinia pestis Antiqua]
 gi|108810424|ref|YP_646191.1| hypothetical protein YPN_0258 [Yersinia pestis Nepal516]
 gi|150260570|ref|ZP_01917298.1| hypothetical protein YPE_2882 [Yersinia pestis CA88-4125]
 gi|45438395|gb|AAS63942.1| GTPase subunit of restriction endonuclease [Yersinia pestis biovar
           Microtus str. 91001]
 gi|108774072|gb|ABG16591.1| hypothetical protein YPN_0258 [Yersinia pestis Nepal516]
 gi|108781800|gb|ABG15858.1| hypothetical protein YPA_3897 [Yersinia pestis Antiqua]
 gi|115346200|emb|CAL19068.1| hypothetical protein [Yersinia pestis CO92]
 gi|149289978|gb|EDM40055.1| hypothetical protein YPE_2882 [Yersinia pestis CA88-4125]
          Length = 687

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 115/405 (28%), Positives = 181/405 (44%), Gaps = 66/405 (16%)

Query: 162 KNLVLTGAPGTGKTFMA----------QAIAKEMGCSDDE-----------------MAF 194
           KN +L G PGTGKT+             A + + G  ++E                 + F
Sbjct: 229 KNTILYGPPGTGKTYCTIELAVRACEPAAYSLQEGKEENEKRRELKKVYDRLIAEKRVRF 288

Query: 195 VQFHPSYDYTDFVEGLRP-VRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
           + FH S+ Y +F+EGLR    D  N  +E++ G+FK  C  A       ++ ++      
Sbjct: 289 ITFHQSFGYEEFIEGLRAETTDDGNVRYEVKAGIFKQICEDAAFGHAGVQQKLD------ 342

Query: 254 SVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELI 313
              E L    E   + G+    +    +F +   ++ T  +    ++K  L +   A L 
Sbjct: 343 ---EALARLQERLSESGSITLETLQGKAFQLAYKSQTTFGIFPSQSKKEDLGQGYNAYL- 398

Query: 314 DLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAA--KKPSVEVSKVDTKNY 371
                NIS+   ++ QA  H        SY+  + N + KQ      P   VS+   +NY
Sbjct: 399 ----KNISLVY-QNPQAKVHNP------SYVRSILNYLIKQEGLPSNPQESVSE-KRQNY 446

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           V IIDEINRG+ISKIFGEL   I+   R GE   ++     I+  S      F VP N+Y
Sbjct: 447 VLIIDEINRGNISKIFGELITLIETSKRAGEPEALSV----ILPYS---SSSFSVPNNLY 499

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNKAI 487
           +IGTMN  DRS+  +D A+RRRF +  + P+ T   E+++  +      +   +R+    
Sbjct: 500 LIGTMNTADRSLTALDTALRRRFEFEAMLPDITVLKETVVKGIDLPRLLQTLNDRIEVLY 559

Query: 488 EETEGLGSAYMIGPAYFRKLGEN--GDDFDKLWKMNIEPLLREYL 530
           +    LG A+ I P    K  E+   +   ++ +  + PLL EY 
Sbjct: 560 DREHTLGHAFFI-PVVQVKEDEDLAFERLKRIMRNKVLPLLEEYF 603
>gi|1854380|dbj|BAA19243.1| NcrB [Escherichia coli]
          Length = 465

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 77/199 (38%), Positives = 107/199 (53%), Gaps = 29/199 (14%)

Query: 346 VLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKV 405
           + YN  + QA ++P         K YVFIIDEINR ++SK+FGE+   ++   RGE   V
Sbjct: 264 IFYNFCQ-QAKEQPE--------KKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSV 314

Query: 406 NTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTE 464
              Y      S+  ++ F+VPENVYIIG MN  DRS+  +D+A+RRRFS++++ P  DT 
Sbjct: 315 PLTY------SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTP 368

Query: 465 SMLD-------ELSCVEEAKETMERLNKAI-EETEGLGSAYMIGPAYFRKLGENGDDFDK 516
              +       E S VE   + M  LN+ I +E   LG  + IG +YF    E+G   D 
Sbjct: 369 QFRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCSGLEDGTSPDT 428

Query: 517 LW-----KMNIEPLLREYL 530
            W       +I PLL EY 
Sbjct: 429 QWLKEIVMTDIAPLLEEYF 447

 Score = 62.8 bits (151), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)

Query: 147 PTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGC--SDDEMAFVQFHPSYDYT 204
           P       ++ L   KN++L G PG GKTF+A+ +A  +    +   +  VQFH SY Y 
Sbjct: 186 PETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 245

Query: 205 DFVEGLRPVRDSDNFGFELRNGVFKDFCAKA 235
           DF++G RP    +  GF  ++G+F +FC +A
Sbjct: 246 DFIQGYRP----NGVGFRRKDGIFYNFCQQA 272
>gi|145600497|ref|YP_001164573.1| hypothetical protein YPDSF_3243 [Yersinia pestis Pestoides F]
 gi|145212193|gb|ABP41600.1| hypothetical protein YPDSF_3243 [Yersinia pestis Pestoides F]
          Length = 687

 Score =  111 bits (277), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 114/405 (28%), Positives = 181/405 (44%), Gaps = 66/405 (16%)

Query: 162 KNLVLTGAPGTGKTFMAQAIA---------------------KEMG------CSDDEMAF 194
           KN +L G PGTGKT+    +A                     +E+        ++  + F
Sbjct: 229 KNTILYGPPGTGKTYCTIELAVRACEPAAYLLQEGKEENEKRRELKKVYDRLIAEKRVRF 288

Query: 195 VQFHPSYDYTDFVEGLRP-VRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
           + FH S+ Y +F+EGLR    D  N  +E++ G+FK  C  A       ++ ++      
Sbjct: 289 ITFHQSFGYEEFIEGLRAETTDDGNVRYEVKAGIFKQICEDAAFGHAGVQQKLD------ 342

Query: 254 SVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELI 313
              E L    E   + G+    +    +F +   ++ T  +    ++K  L +   A L 
Sbjct: 343 ---EALARLQERLSESGSITLETLQGKAFQLAYKSQTTFGIFPSQSKKEDLGQGYNAYL- 398

Query: 314 DLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAA--KKPSVEVSKVDTKNY 371
                NIS+   ++ QA  H        SY+  + N + KQ      P   VS+   +NY
Sbjct: 399 ----KNISLVY-QNPQAKVHNP------SYVRSILNYLIKQEGLPSNPQESVSE-KRQNY 446

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           V IIDEINRG+ISKIFGEL   I+   R GE   ++     I+  S      F VP N+Y
Sbjct: 447 VLIIDEINRGNISKIFGELITLIETSKRAGEPEALSV----ILPYS---SSSFSVPNNLY 499

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNKAI 487
           +IGTMN  DRS+  +D A+RRRF +  + P+ T   E+++  +      +   +R+    
Sbjct: 500 LIGTMNTADRSLTALDTALRRRFEFEAMLPDITVLKETVVKGIDLPRLLQTLNDRIEVLY 559

Query: 488 EETEGLGSAYMIGPAYFRKLGEN--GDDFDKLWKMNIEPLLREYL 530
           +    LG A+ I P    K  E+   +   ++ +  + PLL EY 
Sbjct: 560 DREHTLGHAFFI-PVVQVKEDEDLAFERLKRIMRNKVLPLLEEYF 603
>gi|153807704|ref|ZP_01960372.1| hypothetical protein BACCAC_01986 [Bacteroides caccae ATCC 43185]
 gi|149129313|gb|EDM20527.1| hypothetical protein BACCAC_01986 [Bacteroides caccae ATCC 43185]
          Length = 580

 Score =  110 bits (276), Expect = 2e-22,   Method: Composition-based stats.
 Identities = 75/195 (38%), Positives = 105/195 (53%), Gaps = 33/195 (16%)

Query: 346 VLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKV 405
           V YN  +K A   P         K Y FIIDEINRG++SKIFGEL   I+  YRGE+ K+
Sbjct: 388 VFYNFCRK-AQSDPD--------KKYFFIIDEINRGNMSKIFGELLMLIENDYRGEKHKI 438

Query: 406 NTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN---- 461
              Y +         + F VPEN+YIIG MN  DRS+  +D+A+RRRFS+ ++TP     
Sbjct: 439 RLAYND---------EYFSVPENLYIIGMMNTADRSLAMIDYALRRRFSFFDMTPGFDSV 489

Query: 462 DTESMLDELSC--VEEAKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWK 519
             +   ++L C    +  + ++ LN  I + + LG  + IG +YF     N +  D +W 
Sbjct: 490 GFKKYQEDLDCEVFNKVIDAVKALNIEIAKDDSLGKGFCIGHSYFC----NRESIDNMWL 545

Query: 520 MN-----IEPLLREY 529
            N     I P+LREY
Sbjct: 546 ENVIEYDIAPMLREY 560

 Score = 75.9 bits (185), Expect = 8e-12,   Method: Composition-based stats.
 Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 5/90 (5%)

Query: 148 TRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDD--EMAFVQFHPSYDYTD 205
           + +Y K   LL   KN++L GAPG GKT+ A+ +A  +   +D  ++ F+QFH +Y Y D
Sbjct: 310 SEEYTKLRSLLLAKKNIILQGAPGVGKTYSAKRLAYSIIGEEDRTKVEFIQFHQNYSYED 369

Query: 206 FVEGLRPVRDSDNFGFELRNGVFKDFCAKA 235
           FV G +P  D    GFELR GVF +FC KA
Sbjct: 370 FVMGYKPKEDG---GFELRRGVFYNFCRKA 396
>gi|86130664|ref|ZP_01049264.1| putative endonuclease [Cellulophaga sp. MED134]
 gi|85819339|gb|EAQ40498.1| putative endonuclease [Dokdonia donghaensis MED134]
          Length = 936

 Score =  110 bits (274), Expect = 4e-22,   Method: Composition-based stats.
 Identities = 130/466 (27%), Positives = 205/466 (43%), Gaps = 106/466 (22%)

Query: 151 YAKYIELLEQNKNLVLTGAPGTGKTF--MAQAIAKEMGCSDDEMA--------------- 193
           +AK  + +    N +  G PGTGKT+  +++A +   G + D  A               
Sbjct: 489 FAKAKKTMVAPLNQLFYGPPGTGKTYRTISEAASIIQGQAIDNYATAKAIFQENLGERIE 548

Query: 194 FVQFHPSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
           F+ FH +Y Y DF++GLRP   +    FE  +G+FK    KAL  F        R+ KE 
Sbjct: 549 FITFHQNYSYEDFIQGLRPDVTNQALSFERTDGIFKKIATKALFEFY-------RVYKER 601

Query: 254 SVREILEDFIEEAIDEGTK--FKTSGTKNSFSIVENNERTITVEVPAN------------ 299
            ++  LE+       +  K   KT  +  SF  +  N  T+ ++  +N            
Sbjct: 602 ELQSSLEEPQILPFSDVYKAFLKTLKSGQSFETITGN--TVILDAISNNNLRFKHFEGGQ 659

Query: 300 ----EKTRLVKLSKA----------------------------ELIDLMDNNISVKSGKD 327
                + RL KL +A                             L +++    +++S +D
Sbjct: 660 SYVVSEKRLTKLYQAYDDIDKIININNDIRNAIGGSNSTVYYVALREIIAFKKTLESNQD 719

Query: 328 IQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSV----EVSKVDTKNYVFIIDEINRGDI 383
           I  H   + +  +  Y    Y   +K+A K   +     VS  D  +YV IIDEINR +I
Sbjct: 720 I--HISNEDKIAELKYEEFDYEQ-QKEALKDIDLNLLKSVSSQDVPSYVIIIDEINRANI 776

Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
           S++FGEL   I+P  R   G V       +  + P  + F VP N++IIGTMN  D+S+ 
Sbjct: 777 SRVFGELITLIEPDKRSH-GDVP------LTCTLPSGERFIVPSNLHIIGTMNTADKSIA 829

Query: 444 NMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEGLGSA-YMIGPA 502
            +D A+RRRF ++ + P+ T      +S V+ A    + LNK  E+   L +  + +G +
Sbjct: 830 LLDIALRRRFEFIPMYPDST------ISGVQRA----DILNKINEQITHLKTRDFTVGHS 879

Query: 503 YFRKLGENGDDFDKLWKMN--IEPLLREYLRGFRKTNEIMNQLREA 546
           YF      GD+F     +N  + PLL EY        E+ + L+EA
Sbjct: 880 YFM-----GDNFQLSSTINNKVIPLLLEYF--MNDEEEVKSILKEA 918
>gi|146796|gb|AAA24145.1| mcrB
 gi|537188|gb|AAA97243.1| CG Site No. 4978; alternate gene name rglB [Escherichia coli]
          Length = 465

 Score =  109 bits (273), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 76/199 (38%), Positives = 107/199 (53%), Gaps = 29/199 (14%)

Query: 346 VLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKV 405
           + YN  + QA ++P         K Y+FIIDEINR ++SK+FGE+   ++   RGE   V
Sbjct: 264 IFYNFCQ-QAKEQPE--------KKYIFIIDEINRANLSKVFGEVMMLMEHDKRGENWSV 314

Query: 406 NTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTE 464
              Y      S+  ++ F+VPENVYIIG MN  DRS+  +D+A+RRRFS++++ P  DT 
Sbjct: 315 PLTY------SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTP 368

Query: 465 SMLD-------ELSCVEEAKETMERLNKAI-EETEGLGSAYMIGPAYFRKLGENGDDFDK 516
              +       E S VE   + M  LN+ I +E   LG  + IG +YF    E+G   D 
Sbjct: 369 QFRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSPDT 428

Query: 517 LW-----KMNIEPLLREYL 530
            W       +I PLL EY 
Sbjct: 429 QWLNEIVMTDIAPLLEEYF 447

 Score = 63.2 bits (152), Expect = 5e-08,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)

Query: 147 PTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGC--SDDEMAFVQFHPSYDYT 204
           P       ++ L   KN++L G PG GKTF+A+ +A  +    +   +  VQFH SY Y 
Sbjct: 186 PETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 245

Query: 205 DFVEGLRPVRDSDNFGFELRNGVFKDFCAKA 235
           DF++G RP    +  GF  ++G+F +FC +A
Sbjct: 246 DFIQGYRP----NGVGFRRKDGIFYNFCQQA 272
>gi|89111055|ref|AP_004835.1| 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB
           [Escherichia coli W3110]
 gi|90111737|ref|NP_418766.4| 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB
           [Escherichia coli K12]
 gi|3915756|sp|P15005|MCRB_ECOLI 5-methylcytosine-specific restriction enzyme B (EcoKMcrBC)
 gi|85677086|dbj|BAE78336.1| 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB
           [Escherichia coli W3110]
 gi|87082429|gb|AAC77302.2| 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB
           [Escherichia coli K12]
          Length = 459

 Score =  109 bits (272), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 76/199 (38%), Positives = 107/199 (53%), Gaps = 29/199 (14%)

Query: 346 VLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKV 405
           + YN  + QA ++P         K Y+FIIDEINR ++SK+FGE+   ++   RGE   V
Sbjct: 258 IFYNFCQ-QAKEQPE--------KKYIFIIDEINRANLSKVFGEVMMLMEHDKRGENWSV 308

Query: 406 NTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTE 464
              Y      S+  ++ F+VPENVYIIG MN  DRS+  +D+A+RRRFS++++ P  DT 
Sbjct: 309 PLTY------SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTP 362

Query: 465 SMLD-------ELSCVEEAKETMERLNKAI-EETEGLGSAYMIGPAYFRKLGENGDDFDK 516
              +       E S VE   + M  LN+ I +E   LG  + IG +YF    E+G   D 
Sbjct: 363 QFRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSPDT 422

Query: 517 LW-----KMNIEPLLREYL 530
            W       +I PLL EY 
Sbjct: 423 QWLNEIVMTDIAPLLEEYF 441

 Score = 62.8 bits (151), Expect = 6e-08,   Method: Composition-based stats.
 Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)

Query: 147 PTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGC--SDDEMAFVQFHPSYDYT 204
           P       ++ L   KN++L G PG GKTF+A+ +A  +    +   +  VQFH SY Y 
Sbjct: 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239

Query: 205 DFVEGLRPVRDSDNFGFELRNGVFKDFCAKA 235
           DF++G RP    +  GF  ++G+F +FC +A
Sbjct: 240 DFIQGYRP----NGVGFRRKDGIFYNFCQQA 266
>gi|154507700|ref|ZP_02043342.1| hypothetical protein ACTODO_00181 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797334|gb|EDN79754.1| hypothetical protein ACTODO_00181 [Actinomyces odontolyticus ATCC
           17982]
          Length = 472

 Score =  109 bits (272), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 18/172 (10%)

Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVP 426
           +  +Y FIIDEINRG++SKIFGELF  I+   RG + K+   Y          ++ F VP
Sbjct: 290 EENDYFFIIDEINRGNLSKIFGELFMLIESDKRGPKNKLQLLYS---------RELFSVP 340

Query: 427 ENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAK-----ETM 480
            NV+IIG MN  DRS+  +D+A+RRRF++VE+ P  D++   D  S ++  +       +
Sbjct: 341 ANVHIIGMMNTADRSLAMLDYALRRRFAFVELCPAFDSDGFRDYCSGLDNPRFEALVREV 400

Query: 481 ERLNKAIEETEGLGSAYMIGPAYFRKLG-ENGDDFDKLWKMNIE--PLLREY 529
           E LN+ I E E LG  + IG +YF  +  E   D      ++ E  P+L+EY
Sbjct: 401 ESLNREIAEDESLGEGFCIGHSYFCNMKPETCTDASLALIVDYELIPMLKEY 452

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 8/100 (8%)

Query: 138 YINSVRNAEPTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKE-MGCSD-DEMAFV 195
           ++N V  +E   +Y   + LL+  KN++L GAPG GKT+ A+ +A   MG  D   +  V
Sbjct: 193 FLNEVYMSE--ERYDAIVGLLKTKKNIILQGAPGVGKTYAAKRLAYSMMGVKDVSRVKLV 250

Query: 196 QFHPSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKA 235
           QFH SY Y DF+EG RP       GFEL  G F  FC KA
Sbjct: 251 QFHQSYSYEDFIEGYRP----SGAGFELVKGAFYSFCKKA 286
>gi|146790|gb|AAA24142.1| mcrB protein
          Length = 455

 Score =  108 bits (271), Expect = 7e-22,   Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 107/198 (54%), Gaps = 29/198 (14%)

Query: 347 LYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVN 406
           +YN  + QA ++P         K Y+FIIDEINR ++SK+FGE+   ++   RGE   V 
Sbjct: 255 IYNFCQ-QAKEQPE--------KKYIFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVP 305

Query: 407 TQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTES 465
             Y      S+  ++ F+VPENVYIIG MN  DRS+  +D+A+RRRFS++++ P  DT  
Sbjct: 306 LTY------SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQ 359

Query: 466 MLD-------ELSCVEEAKETMERLNKAI-EETEGLGSAYMIGPAYFRKLGENGDDFDKL 517
             +       E S VE   + M  LN+ I +E   LG  + IG +YF    E+G   D  
Sbjct: 360 FRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSPDTQ 419

Query: 518 W-----KMNIEPLLREYL 530
           W       +I PLL EY 
Sbjct: 420 WLNEIVMTDIAPLLEEYF 437
>gi|86149519|ref|ZP_01067749.1| 5-methylcytosine-specific restriction enzyme B [Campylobacter
           jejuni subsp. jejuni CF93-6]
 gi|85839787|gb|EAQ57046.1| 5-methylcytosine-specific restriction enzyme B [Campylobacter
           jejuni subsp. jejuni CF93-6]
          Length = 452

 Score =  108 bits (270), Expect = 9e-22,   Method: Composition-based stats.
 Identities = 89/280 (31%), Positives = 139/280 (49%), Gaps = 43/280 (15%)

Query: 191 EMAFVQFHPSYDYTDFVEGLRPVRDSD---NFGFELRNGVFKDFCAKALQNFKDSEKPIE 247
           ++ F  FH SY Y +FVEG++P  +SD      +++++G+FK+ C KAL+N  D E    
Sbjct: 23  QIVFTTFHQSYGYEEFVEGIKPSLNSDENSQINYKVKDGIFKELCKKALENRDDIE---- 78

Query: 248 RLQKEGSVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITV---EVPANEKTRL 304
                  + ++ E   E+A +    F+   TK  +SI     +T  +   ++  N K   
Sbjct: 79  --SFNFYINDLKEKTKEDANNPEKYFQLPNTK--YSIQYRGGKTFRIKFDDMSKNHKDYP 134

Query: 305 VKLSKAELIDLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVS 364
           V +   E +    N   + +                 +Y+  + N +K Q  K    +  
Sbjct: 135 VSIDNIEKLYKTSNIDEIYN----------------SAYVKAILNYLKSQGLKDYKEKDE 178

Query: 365 KVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFKD 421
           K++   Y+ IIDEINRG++SKIFGEL   I+P  R    E  ++   Y           +
Sbjct: 179 KINLP-YIIIIDEINRGNVSKIFGELITLIEPSKRLGNEEALELTLAYSG---------E 228

Query: 422 GFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN 461
            F VP+NVYIIGTMN  DRS+ ++D A+RRRF +VE+ PN
Sbjct: 229 KFGVPKNVYIIGTMNTADRSITSLDTALRRRFEFVEMMPN 268
>gi|146791|gb|AAA24143.1| 33kD protein (put.); putative
          Length = 294

 Score =  108 bits (270), Expect = 1e-21,   Method: Composition-based stats.
 Identities = 76/198 (38%), Positives = 107/198 (54%), Gaps = 29/198 (14%)

Query: 347 LYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVN 406
           +YN  + QA ++P         K Y+FIIDEINR ++SK+FGE+   ++   RGE   V 
Sbjct: 94  IYNFCQ-QAKEQPE--------KKYIFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVP 144

Query: 407 TQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTES 465
             Y      S+  ++ F+VPENVYIIG MN  DRS+  +D+A+RRRFS++++ P  DT  
Sbjct: 145 LTY------SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQ 198

Query: 466 MLD-------ELSCVEEAKETMERLNKAI-EETEGLGSAYMIGPAYFRKLGENGDDFDKL 517
             +       E S VE   + M  LN+ I +E   LG  + IG +YF    E+G   D  
Sbjct: 199 FRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSPDTQ 258

Query: 518 W-----KMNIEPLLREYL 530
           W       +I PLL EY 
Sbjct: 259 WLNEIVMTDIAPLLEEYF 276
>gi|116669427|ref|YP_830360.1| ATPase associated with various cellular activities, AAA_5
           [Arthrobacter sp. FB24]
 gi|116609536|gb|ABK02260.1| ATPase associated with various cellular activities, AAA_5
           [Arthrobacter sp. FB24]
          Length = 743

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 85/266 (31%), Positives = 132/266 (49%), Gaps = 38/266 (14%)

Query: 284 IVENNERTITVEVPANEKTRLVKLSKAELI-DLMDNNISVKSGKDIQAH--FHRKHRTQQ 340
           ++E N + +    P   KT L K   A+L  D  D  + +       A+  F    R  +
Sbjct: 476 LLEENRQLVLYGPPGTGKTYLAKHLAAQLAGDSTDERVKLVQFHPSYAYEDFFEGFRPDK 535

Query: 341 DSYIFVLYNIIK------KQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAI 394
                V + ++        + A KP  E      K Y  IIDE+NR +++K+FGEL+F +
Sbjct: 536 TDEGQVSFKLVAGPLRRLAEEAAKPGNE-----NKPYFLIIDEMNRANLAKVFGELYFLL 590

Query: 395 DPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFS 454
           +  YR +R  +  QY      ++PF     +P+N+YIIGTMN  DRS+  MD A+RRRFS
Sbjct: 591 E--YRDDR--IYLQYS----PNEPFT----LPDNLYIIGTMNTADRSIAMMDAAIRRRFS 638

Query: 455 WVEVTPNDTESMLDELSCVEEAKE-------TMERLNKAIEETEGLGSAYMIGPAYF-RK 506
           ++E+ P  TE +   L    +A+         ++ LN AI+E +      MIGP+YF +K
Sbjct: 639 FIELHPK-TEPVKGSLLRFLQARNLDTTPALLLDALNDAIDEWD---RDLMIGPSYFMKK 694

Query: 507 LGENGDDFDKLWKMNIEPLLREYLRG 532
             +      ++WK  + PLL E+  G
Sbjct: 695 AAQTPAGLRRIWKYELMPLLEEHYHG 720

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 6/93 (6%)

Query: 146 EPTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMG--CSDDEMAFVQFHPSYDY 203
           EP ++ A   ELLE+N+ LVL G PGTGKT++A+ +A ++    +D+ +  VQFHPSY Y
Sbjct: 468 EPLQEIA---ELLEENRQLVLYGPPGTGKTYLAKHLAAQLAGDSTDERVKLVQFHPSYAY 524

Query: 204 TDFVEGLRPVR-DSDNFGFELRNGVFKDFCAKA 235
            DF EG RP + D     F+L  G  +    +A
Sbjct: 525 EDFFEGFRPDKTDEGQVSFKLVAGPLRRLAEEA 557
>gi|125621518|gb|EAZ49851.1| sensor histidine kinase [Vibrio cholerae V51]
          Length = 688

 Score =  107 bits (266), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 126/465 (27%), Positives = 185/465 (39%), Gaps = 123/465 (26%)

Query: 163 NLVLTGAPGTGKTFMAQAIA-------------KEMGCSDDEMA------FVQFHPSYDY 203
           N +L G PGTGKT+     A             +E+    D +       FV FH S+ Y
Sbjct: 171 NQILYGPPGTGKTYHTIEAAVKAAEPTYSWENREELKSKYDALVDAKRIRFVTFHQSFGY 230

Query: 204 TDFVEGLRPVRDSD-NFGFELRNGVFKDFCAKALQNFKDSEKPIE------RLQKEGSVR 256
            DFVEGL      D    + +++GVFK  C  A  +   ++  IE      +L  EG+ +
Sbjct: 231 EDFVEGLVAETTEDKQVAYRIKDGVFKKICDDAAVSEMHADPAIETNGRVWKLSIEGAHQ 290

Query: 257 EILEDFIEE----AIDEGTK-----------FKTSGTKNSFSI---------------VE 286
              + +  E    AI  G             FK+ GT N  S+               ++
Sbjct: 291 NATKTYCLENNLGAIGWGDTGDLSKDARNEYFKSQGTNNQNSLMYFCHEMAIGDLVLCID 350

Query: 287 NNERTITVEVPANE--------KTR-----------LVKLSKAELIDLMDNN-------- 319
           +      V V   E         TR           L K    +   L DN         
Sbjct: 351 SKTSVEAVGVVTGEYRYAEEGLPTRDDYCHQLPIKWLAKGFSVDFKSLNDNKQFSLPTCY 410

Query: 320 -ISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEI 378
            +S  S  D+ +H    H                 Q  + P+  V+    +N+V +IDEI
Sbjct: 411 PLSRLSVGDVLSHLQSHH----------------VQVGETPAASVT-AQKQNFVLVIDEI 453

Query: 379 NRGDISKIFGELFFAIDPGYRG---ERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTM 435
           NRG+ISKIFGEL   I+   RG   E   +   Y N      PF     VP+N+YIIGTM
Sbjct: 454 NRGNISKIFGELITLIEDSKRGGAEEAVSLTLPYSN-----KPFS----VPDNLYIIGTM 504

Query: 436 NDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNKAIEETEG 492
           N  DRS+  MD A+RRRF +VE+ PN +    +++  +      K   ER+    +    
Sbjct: 505 NTADRSLAMMDTALRRRFDFVEMMPNPSLLHGAVVKGIHLETLLKTLNERIEILYDREHT 564

Query: 493 LGSAYMIGPAYFRKLGENGDDFDK-------LWKMNIEPLLREYL 530
           LG A+ +    F    +  +  D+       +++  + PLL+EY 
Sbjct: 565 LGHAFFMPVKAFLDADDEHEQEDRAFAKLVSVFQNKVIPLLQEYF 609
>gi|116220782|ref|ZP_01486205.1| hypothetical protein VchoV5_02001207 [Vibrio cholerae V51]
          Length = 638

 Score =  106 bits (265), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 126/465 (27%), Positives = 185/465 (39%), Gaps = 123/465 (26%)

Query: 163 NLVLTGAPGTGKTFMAQAIA-------------KEMGCSDDEMA------FVQFHPSYDY 203
           N +L G PGTGKT+     A             +E+    D +       FV FH S+ Y
Sbjct: 121 NQILYGPPGTGKTYHTIEAAVKAAEPTYSWENREELKSKYDALVDAKRIRFVTFHQSFGY 180

Query: 204 TDFVEGLRPVRDSD-NFGFELRNGVFKDFCAKALQNFKDSEKPIE------RLQKEGSVR 256
            DFVEGL      D    + +++GVFK  C  A  +   ++  IE      +L  EG+ +
Sbjct: 181 EDFVEGLVAETTEDKQVAYRIKDGVFKKICDDAAVSEMHADPAIETNGRVWKLSIEGAHQ 240

Query: 257 EILEDFIEE----AIDEGTK-----------FKTSGTKNSFSI---------------VE 286
              + +  E    AI  G             FK+ GT N  S+               ++
Sbjct: 241 NATKTYCLENNLGAIGWGDTGDLSKDARNEYFKSQGTNNQNSLMYFCHEMAIGDLVLCID 300

Query: 287 NNERTITVEVPANE--------KTR-----------LVKLSKAELIDLMDNN-------- 319
           +      V V   E         TR           L K    +   L DN         
Sbjct: 301 SKTSVEAVGVVTGEYRYAEEGLPTRDDYCHQLPIKWLAKGFSVDFKSLNDNKQFSLPTCY 360

Query: 320 -ISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEI 378
            +S  S  D+ +H    H                 Q  + P+  V+    +N+V +IDEI
Sbjct: 361 PLSRLSVGDVLSHLQSHH----------------VQVGETPAASVT-AQKQNFVLVIDEI 403

Query: 379 NRGDISKIFGELFFAIDPGYRG---ERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTM 435
           NRG+ISKIFGEL   I+   RG   E   +   Y N      PF     VP+N+YIIGTM
Sbjct: 404 NRGNISKIFGELITLIEDSKRGGAEEAVSLTLPYSN-----KPFS----VPDNLYIIGTM 454

Query: 436 NDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNKAIEETEG 492
           N  DRS+  MD A+RRRF +VE+ PN +    +++  +      K   ER+    +    
Sbjct: 455 NTADRSLAMMDTALRRRFDFVEMMPNPSLLHGAVVKGIHLETLLKTLNERIEILYDREHT 514

Query: 493 LGSAYMIGPAYFRKLGENGDDFDK-------LWKMNIEPLLREYL 530
           LG A+ +    F    +  +  D+       +++  + PLL+EY 
Sbjct: 515 LGHAFFMPVKAFLDADDEHEQEDRAFAKLVSVFQNKVIPLLQEYF 559
>gi|86741527|ref|YP_481927.1| AAA_5 ATPase associated with various cellular activities [Frankia
           sp. CcI3]
 gi|86568389|gb|ABD12198.1| AAA_5 ATPase associated with various cellular activities [Frankia
           sp. CcI3]
          Length = 741

 Score =  106 bits (265), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 65/170 (38%), Positives = 101/170 (59%), Gaps = 23/170 (13%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           +  IIDEINRGD+++IFGEL+F ++  YRGE   V TQY +   D+  F+    +P+N++
Sbjct: 542 FFLIIDEINRGDLARIFGELYFLLE--YRGE--AVTTQYAS--ADTRDFQ----LPKNLF 591

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPN--DTESMLDELSCV----EEAKETMERLN 484
           IIGTMN  DRS+   D A+RRRF++V + P+   T S+L          +EA   +  LN
Sbjct: 592 IIGTMNSADRSIAAFDQALRRRFTFVGLHPDVEPTASVLRRWLAAGDLPDEAARLLGELN 651

Query: 485 KAIEETEGLGSAYMIGPAYFR--KLGENGDDFDKLWKMNIEPLLREYLRG 532
           + I++ +       IGP+Y    ++ ++ D  D++W+  I PLL E+  G
Sbjct: 652 RRIDDPDA-----RIGPSYLMRDRVHQSADGLDRVWEHQILPLLAEHHVG 696

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 14/96 (14%)

Query: 155 IELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDE---MAFVQFHPSYDYTDFVEGLR 211
           +ELL     L+  G PGTGKT++A+ +A  +  +DD    +  VQFHPSY Y DF +G R
Sbjct: 444 VELLRDRPQLIFYGPPGTGKTYLARRLAWHL--ADDRRENVTLVQFHPSYMYEDFFQGFR 501

Query: 212 PVR---------DSDNFGFELRNGVFKDFCAKALQN 238
           PV+          ++   FEL +G  +     A  N
Sbjct: 502 PVQVKGGDGDAATTNRMSFELVDGPLRRLATAAELN 537
>gi|153000505|ref|YP_001366186.1| GTPase subunit of restriction endonuclease-like protein [Shewanella
           baltica OS185]
 gi|151365123|gb|ABS08123.1| GTPase subunit of restriction endonuclease-like protein [Shewanella
           baltica OS185]
          Length = 605

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 102/343 (29%), Positives = 147/343 (42%), Gaps = 78/343 (22%)

Query: 157 LLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDE------------------------M 192
           +L    N +L G PGTGKT+    I K +   D E                        +
Sbjct: 164 MLNSPLNQILYGPPGTGKTY--NTINKSLSIVDPEYLSEYGHDRTKVKDRFDELVIENRI 221

Query: 193 AFVQFHPSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKA------LQNFKDSEKPI 246
            FV FH S+ Y DFVEGL+   D+    + +  GVFK FC +A      + +    E  +
Sbjct: 222 GFVTFHQSFSYEDFVEGLKANSDNGLLSYSVEPGVFKIFCDRASSSNSQVISVDAFENAV 281

Query: 247 ERLQKEGSVREILEDFIEEAIDEGTKFKTS-GTKNSFSIVENNERTIT---VEVPANEKT 302
            +LQ++    E  ED IE     G  F+       +F I  ++  +     V   AN + 
Sbjct: 282 LQLQEK---YEEAEDRIEMETIRGKTFEIEYAGGATFKIFPHSTESTDPKYVASIANVRK 338

Query: 303 RLVKLSKAELIDLMDNNISVKSG--KDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPS 360
             +  SK  +      N S   G    ++ HF  K           + +++  ++  +P 
Sbjct: 339 LYLTGSKKGIY-----NTSYVEGFLVYLKKHFGLKE---------YVADVVNHESTSQP- 383

Query: 361 VEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRG---ERGKVNTQYQNIIEDSD 417
                     +V IIDEINRG+IS IFGEL   I+P  R    E   V   Y        
Sbjct: 384 ----------FVLIIDEINRGNISNIFGELITLIEPSKRAGGAEALSVKLPYS------- 426

Query: 418 PFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTP 460
             K+ F VP N+YIIGTMN  D+S+  +D A+RRRF + E+ P
Sbjct: 427 --KESFSVPSNLYIIGTMNTADKSLAQVDIALRRRFEFTEMMP 467
>gi|119962222|ref|YP_946857.1| hypothetical protein AAur_1069 [Arthrobacter aurescens TC1]
 gi|119949081|gb|ABM07992.1| hypothetical protein AAur_1069 [Arthrobacter aurescens TC1]
          Length = 718

 Score =  105 bits (263), Expect = 6e-21,   Method: Composition-based stats.
 Identities = 83/262 (31%), Positives = 135/262 (51%), Gaps = 30/262 (11%)

Query: 284 IVENNERTITVEVPANEKTRLVKLSKAELI-DLMDNNISVKSGKDIQAH--FHRKHRTQQ 340
           ++E N + +    P   KT L K   AEL  D  D  + +       A+  F   +R  +
Sbjct: 451 LLEENRQLVLYGPPGTGKTYLAKHLAAELAGDHTDERVKLVQFHPSYAYEDFFEGYRPDK 510

Query: 341 DSYIFVLYNIIKKQAAKKPSVEVSKVDT--KNYVFIIDEINRGDISKIFGELFFAIDPGY 398
                V + ++     ++ + E +K +   K Y  IIDE+NR +++K+FGEL+F ++  Y
Sbjct: 511 TDDGQVSFKLVAG-PLRRLAEEAAKPENAHKPYFLIIDEMNRANLAKVFGELYFLLE--Y 567

Query: 399 RGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEV 458
           R +R  +  QY      ++PF     +P+N+YIIGTMN  DRS+  MD A+RRRF+++E+
Sbjct: 568 RDDR--IYLQYS----PNEPFS----LPDNLYIIGTMNTADRSIAMMDAAIRRRFAFIEL 617

Query: 459 TPNDTESMLDELSCVEEAK-------ETMERLNKAIEETEGLGSAYMIGPAYFRK-LGEN 510
            P + E +   L    EA+       + ++ LN AI++ +      MIGP+YF K    N
Sbjct: 618 HPKE-EPIRGTLRRYLEARGLDTLNADLLDALNDAIDDWD---RDLMIGPSYFMKNAARN 673

Query: 511 GDDFDKLWKMNIEPLLREYLRG 532
                ++WK  + PLL E+  G
Sbjct: 674 PTGLRRIWKYELMPLLEEHYHG 695

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 7/103 (6%)

Query: 146 EPTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGC--SDDEMAFVQFHPSYDY 203
           EP ++ A   ELLE+N+ LVL G PGTGKT++A+ +A E+    +D+ +  VQFHPSY Y
Sbjct: 443 EPLKEIA---ELLEENRQLVLYGPPGTGKTYLAKHLAAELAGDHTDERVKLVQFHPSYAY 499

Query: 204 TDFVEGLRPVRDSD-NFGFELRNGVFKDFCAKALQNFKDSEKP 245
            DF EG RP +  D    F+L  G  +    +A +  +++ KP
Sbjct: 500 EDFFEGYRPDKTDDGQVSFKLVAGPLRRLAEEAAKP-ENAHKP 541
>gi|150401934|ref|YP_001329228.1| hypothetical protein MmarC7_0004 [Methanococcus maripaludis C7]
 gi|150032964|gb|ABR65077.1| hypothetical protein MmarC7_0004 [Methanococcus maripaludis C7]
          Length = 845

 Score =  103 bits (256), Expect = 4e-20,   Method: Composition-based stats.
 Identities = 103/334 (30%), Positives = 157/334 (47%), Gaps = 26/334 (7%)

Query: 242 SEKPIERLQKEGSVREILEDFIEEAID---EGTKFKTSGTKNSFSIVENNERTITVEVPA 298
           S+  I +L KE  + E L+D I    D      +F    TK   +    N  TI +++  
Sbjct: 471 SQMSIYKLSKEDLLIENLKDLISNNSDVENNKPRFDEVFTKLIGNTDFENGETIRIDMKN 530

Query: 299 NEKTRLVKLSKAELIDLMDNNISVKSGKDIQAHFHRKHRTQQDSYIF-----VLYNIIKK 353
                L+K    + I     N+S +    I     R + T +++ I        YN +  
Sbjct: 531 PNSHYLIKKVNEKTIFYDKGNVSGEYNLSINT-LKRMYDTGENNIITGGGLESYYNGLLT 589

Query: 354 QAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNI 412
           +  K       K D KNYV IIDEINRG+ISKIFGEL   I+   R G + ++ T     
Sbjct: 590 RINKIAEQLSVKTDEKNYVLIIDEINRGNISKIFGELITLIEDDKRLGTKNQITTTL--- 646

Query: 413 IEDSDPF-KDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELS 471
                P+ KD F VP+N+Y++GTMN  DRS+  MD A+RRRF + E+ P D E +   + 
Sbjct: 647 -----PYSKDTFGVPKNLYLLGTMNTADRSIALMDTALRRRFHFEELMP-DPELLNGIIV 700

Query: 472 CVEEAKETMERLNKAIE----ETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLR 527
                K+ +E+LN+ +E        +G AY +   Y     E      +++K  I PLL+
Sbjct: 701 KGINLKQMLEKLNERVEFLYDRDHEIGHAYFLPLKYIENEEEQFKKLCQIFKNKIIPLLQ 760

Query: 528 EYLRGFRKTNEIM--NQLREAYVGEKEEEHSNIP 559
           EY     +  +I+  +  R+    E+ E + +IP
Sbjct: 761 EYFYDNYEKIQIVLGDHFRQLNRMEETENYEDIP 794
>gi|149173165|ref|ZP_01851796.1| ATPase associated with various cellular activities, AAA_5
           [Planctomyces maris DSM 8797]
 gi|148847971|gb|EDL62303.1| ATPase associated with various cellular activities, AAA_5
           [Planctomyces maris DSM 8797]
          Length = 267

 Score =  100 bits (249), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 66/181 (36%), Positives = 99/181 (54%), Gaps = 29/181 (16%)

Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVP 426
           +++NYVFIIDEINRG++SKIFGEL   I+   RG    +   Y      +    + FF+P
Sbjct: 81  ESENYVFIIDEINRGNLSKIFGELLMLIEADKRGSEFSIPLTY------AKDQSERFFIP 134

Query: 427 ENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTP-------------NDTESMLDELSCV 473
           +N++IIG MN  DRS+  +D+A+RRRF+++++ P             N+ ES + +L   
Sbjct: 135 QNLHIIGMMNTADRSLSMVDYALRRRFTFIDLQPEFETASFRHFMEKNEVESQIIDLLV- 193

Query: 474 EEAKETMERLNKAIE-ETEGLGSAYMIGPAYFRKLG---ENGDD-FDKLWKMNIEPLLRE 528
                 M +LN  I  E   LG  + +G ++F   G   E G D +  + +  I PLLRE
Sbjct: 194 ----NRMHQLNGKIRAEKTNLGPGFEVGHSFFCPQGTEDELGMDWYRSIIRTEIAPLLRE 249

Query: 529 Y 529
           Y
Sbjct: 250 Y 250

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 5/80 (6%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDE--MAFVQFHPSYDYTDFVEGLRPVRD 215
           + + KN++L G PG GKT++A+ +A  +    DE  +  VQFH SY Y DF++G RP   
Sbjct: 1   MARKKNVILQGPPGVGKTYIAKRLAYSLLGYKDESKVEMVQFHQSYSYEDFIQGYRP--- 57

Query: 216 SDNFGFELRNGVFKDFCAKA 235
            +  GF+ ++G+F  FC KA
Sbjct: 58  KETGGFQRQDGIFHQFCGKA 77
>gi|81096279|ref|ZP_00874626.1| ATPas [Streptococcus suis 89/1591]
 gi|80977623|gb|EAP41159.1| ATPas [Streptococcus suis 89/1591]
          Length = 565

 Score = 98.2 bits (243), Expect = 1e-18,   Method: Composition-based stats.
 Identities = 65/171 (38%), Positives = 97/171 (56%), Gaps = 20/171 (11%)

Query: 368 TKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPE 427
           + +Y FIIDEINRG++SKIFGELF  I+   RG+        Q +  D     + F +PE
Sbjct: 386 SHDYFFIIDEINRGNLSKIFGELFMLIENDKRGK------SLQLLYSD-----EQFSIPE 434

Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAK-----ETME 481
           N+YIIG MN  DRS+  +D+A+RRRF++ ++ P   T    D  + ++  K       +E
Sbjct: 435 NLYIIGMMNTADRSLALLDYALRRRFAFFDIKPGFSTAGFKDYQTNLKNEKFDRLISCIE 494

Query: 482 RLNKAIEETEGLGSAYMIGPAYFRKLGENGDD---FDKLWKMNIEPLLREY 529
           +LN+AI   E LG ++ IG +YF  L     D    + + +  + PLL+EY
Sbjct: 495 KLNQAISTEEVLGDSFCIGHSYFCGLSAEVLDQGLLEAIVEYELIPLLKEY 545

 Score = 72.8 bits (177), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 25/149 (16%)

Query: 150 KYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIA-KEMGCSDDEMAF-VQFHPSYDYTDFV 207
           +Y +   +L+  KN++L GAPG GKTF+A+ +A   MG  D E    +QFH SY Y DF+
Sbjct: 298 EYDQLTSILQMKKNIILQGAPGVGKTFVAERLAFSLMGKPDLERVMTIQFHQSYSYEDFI 357

Query: 208 EGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAI 267
            G RP       GFELR G F  FC KA     +S+K  +              FI + I
Sbjct: 358 MGFRP----STSGFELRRGAFYTFCKKA-----ESDKSHDYF------------FIIDEI 396

Query: 268 DEGTKFKTSGTKNSFSIVENNERTITVEV 296
           + G   K  G    F ++EN++R  ++++
Sbjct: 397 NRGNLSKIFG--ELFMLIENDKRGKSLQL 423
>gi|83645100|ref|YP_433535.1| GTPase subunit of restriction endonuclease [Hahella chejuensis KCTC
           2396]
 gi|83633143|gb|ABC29110.1| GTPase subunit of restriction endonuclease [Hahella chejuensis KCTC
           2396]
          Length = 777

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 17/174 (9%)

Query: 364 SKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGF 423
           S+   +NYV IIDEINRG+IS+IFGEL   ++P  R  +G  + +   +    +P     
Sbjct: 541 SRAKKRNYVLIIDEINRGNISRIFGELITLLEPDKR--KGGEDERSVTLPYSKEPIT--- 595

Query: 424 FVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVE-EAKETMER 482
            VP+N+Y++GTMN  D+S+  +D A+RRRF +VE+ P     +L  +S  + +  E ++ 
Sbjct: 596 -VPDNLYVLGTMNTADKSLAQLDLALRRRFEFVELMPQ--PELLTGISVHDVDMGELLDV 652

Query: 483 LNKAIEETEGLGSAYMIGPAYFRKLGE-NGDD-----FDKLWKMNIEPLLREYL 530
           +N+ IE    L   +M+G AYF  L + N DD        ++   I PLL+EY 
Sbjct: 653 MNQRIEAL--LDRDHMLGHAYFWPLRDANSDDERESLLADIFARRIVPLLQEYF 704
>gi|146318514|ref|YP_001198226.1| GTPase subunit of restriction endonuclease [Streptococcus suis
           05ZYH33]
 gi|145689320|gb|ABP89826.1| GTPase subunit of restriction endonuclease [Streptococcus suis
           05ZYH33]
          Length = 569

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 22/172 (12%)

Query: 368 TKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPE 427
           + NY FIIDEINRG++SKIFGELF  I+   RG+        Q +  D     + F +PE
Sbjct: 390 SHNYFFIIDEINRGNLSKIFGELFMLIENDKRGK------SLQLLYSD-----EQFSIPE 438

Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAK-----ETME 481
           N+YIIG MN  DRS+  +D+A+RRRF++ ++ P   T    D  + ++  K       +E
Sbjct: 439 NLYIIGMMNTADRSLALLDYALRRRFAFFDIKPGFSTTGFKDYQANLKNEKFDRLISCVE 498

Query: 482 RLNKAIEETEGLGSAYMIGPAYFRKLG----ENGDDFDKLWKMNIEPLLREY 529
           +LN+AI   E LG ++ IG +YF  L     E G   + + +  + PLL+EY
Sbjct: 499 KLNQAISTEEVLGDSFCIGHSYFCGLSAEVLEQG-LLEAIVEYELIPLLKEY 549

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 6/88 (6%)

Query: 150 KYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIA-KEMGCSDDEMAF-VQFHPSYDYTDFV 207
           +Y +   +L+  KN++L GAPG GKTF+A+ +A   MG  D E    +QFH SY Y DF+
Sbjct: 302 EYDQLTSILQMKKNIILQGAPGVGKTFIAERLAFSLMGKPDLERVMTIQFHQSYSYEDFI 361

Query: 208 EGLRPVRDSDNFGFELRNGVFKDFCAKA 235
            G RP       GFELR G F  FC KA
Sbjct: 362 MGFRP----STSGFELRRGAFYTFCKKA 385
>gi|57640730|ref|YP_183208.1| putative 5-methylcytosine restriction system, GTPase subunit
           [Thermococcus kodakarensis KOD1]
 gi|57159054|dbj|BAD84984.1| putative 5-methylcytosine restriction system, GTPase subunit
           [Thermococcus kodakarensis KOD1]
          Length = 700

 Score = 97.4 bits (241), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 16/168 (9%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KDGFFVPENV 429
           +  IIDEINRG+IS+I GE+   +DP  R     +  +Y+  I  + P+ ++ F +P N+
Sbjct: 503 FYLIIDEINRGNISRILGEVITLLDPDKR-----LGMEYETKI--TLPYSREPFALPPNL 555

Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEE 489
           YIIGTMN  DRS+  +D A+RRRF+++E+ P   E    E+  V   +  +  LN+ IEE
Sbjct: 556 YIIGTMNSTDRSIAFLDMALRRRFAFLEILPRPEELGDIEVGGV-NLQHLLSTLNRVIEE 614

Query: 490 TEGLGSAYMIGPAYFR-----KLGENGDDFDKLWKMNIEPLLREYLRG 532
               G  Y IG  YFR     K  E       ++   I PLL+EY  G
Sbjct: 615 ER--GKDYTIGHGYFREVIKAKPEERAKALKDVFYYKILPLLQEYFYG 660

 Score = 58.9 bits (141), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 5/112 (4%)

Query: 150 KYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEMAFVQFHPSYDYTDFVEG 209
           ++ +  E+L +   ++L G PGTGKT +A  ++++     D++  V FH SY Y DFVEG
Sbjct: 384 QFTQLEEVLRRFGGVILYGPPGTGKTKLALDLSRDA----DKVEVVTFHQSYSYEDFVEG 439

Query: 210 LRPVRDSDNFGFELRNGVFKDFCAKAL-QNFKDSEKPIERLQKEGSVREILE 260
            RPV       + + +G+ K    +A+ +     E   +  +K+ +V E L+
Sbjct: 440 FRPVEKEGKLLYVVEDGILKRLAVEAIFRGLHPDEGEADYKKKKEAVLEYLQ 491
>gi|28868859|ref|NP_791478.1| hypothetical protein PSPTO_1653 [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|28852098|gb|AAO55173.1| conserved domain protein [Pseudomonas syringae pv. tomato str.
           DC3000]
          Length = 517

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 64/180 (35%), Positives = 103/180 (57%), Gaps = 16/180 (8%)

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KDGFFVPENVY 430
           V IIDEINRG++S+IFGEL   I+P  R    +        +E + P+ K+ F +P N++
Sbjct: 219 VLIIDEINRGNVSRIFGELITLIEPSKRAGADEA-------LEVTLPYSKERFSIPGNIH 271

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEA-KETMERLNKAIEE 489
           +IGTMN  DRS+  +D A+RRRF+++EV PN    +LDE+     A  E +  +N+ I  
Sbjct: 272 LIGTMNTADRSLAALDIALRRRFTFIEVPPN--PELLDEVEVDGIAIDELLSLMNQRIAA 329

Query: 490 TEGLGSAYMIGPAYFRKLGENG--DDFDKLWKMNIEPLLREY-LRGFRKTNEIMNQLREA 546
              L   + +G AYF  L +    +  + +++  I PLL+EY    +++   ++N  R+A
Sbjct: 330 L--LDRDHCLGHAYFMPLKDEPTLERLEGIFREQILPLLQEYFFEDWQRIQWVLNDQRKA 387
>gi|124519812|ref|ZP_01695282.1| ATPase associated with various cellular activities, AAA_5 [Bacillus
           coagulans 36D1]
 gi|124497909|gb|EAY45460.1| ATPase associated with various cellular activities, AAA_5 [Bacillus
           coagulans 36D1]
          Length = 804

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 20/167 (11%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           + FIIDEINRG++SKIFGEL   I+  YRG   K    Y  +     PF     VP+N+Y
Sbjct: 627 FFFIIDEINRGNMSKIFGELLMLIEKDYRGT--KATLAYNGL-----PFT----VPKNLY 675

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTP-------NDTESMLDELSCVEEAKETMERL 483
           +IG MN  DRS+  +D+A+RRRFS+ E+ P          +S LD         E ++ L
Sbjct: 676 LIGMMNTADRSLAMIDYALRRRFSFFEIEPGFHSAGFQSYQSALDH-DTFNTLIERIKEL 734

Query: 484 NKAIEETEGLGSAYMIGPAYFRKLGENGDDFDK-LWKMNIEPLLREY 529
           N+ I     LG  + IG +YF    E  D++ K + + +I P+L EY
Sbjct: 735 NQEIAADSSLGPGFRIGHSYFCGQAECTDEWLKEVVEFDILPMLHEY 781

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 6/88 (6%)

Query: 150 KYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKE-MGCSDD-EMAFVQFHPSYDYTDFV 207
           +Y     LL+  KNL+L GAPG GKTF A+ +A   MG  DD  +  +QFH +Y Y DF+
Sbjct: 536 RYETLTSLLKHKKNLILQGAPGVGKTFTAKRLAYAMMGLKDDSRIELIQFHQNYSYEDFM 595

Query: 208 EGLRPVRDSDNFGFELRNGVFKDFCAKA 235
            G +P  +    GF+L+ G+F  FC KA
Sbjct: 596 MGYKPKEE----GFQLQYGIFYKFCQKA 619
>gi|94970780|ref|YP_592828.1| ATPase associated with various cellular activities, AAA_5
           [Acidobacteria bacterium Ellin345]
 gi|94552830|gb|ABF42754.1| ATPase associated with various cellular activities, AAA_5
           [Acidobacteria bacterium Ellin345]
          Length = 805

 Score = 96.7 bits (239), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 23/194 (11%)

Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVP 426
           D + ++FIIDEINRG++SKI GE+   I+P  RG    +   Y    +++      FFVP
Sbjct: 620 DKRPFIFIIDEINRGNLSKILGEVMMLIEPDKRGPEFAIPLAYSGSADET------FFVP 673

Query: 427 ENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETM-----E 481
            NV++IG MN  DRS+  +D+A+RRRF ++ + P               AK+ +      
Sbjct: 674 SNVFVIGLMNTADRSLAMVDYALRRRFRFIGLKPEFKSERFSGFLLQAGAKQPLIKKIVS 733

Query: 482 RLNKAIEETEG----LGSAYMIGPAYFRKLGENGDDFDKLW-----KMNIEPLLREY-LR 531
           RL+   +E  G    LG  Y IG ++F  +  +G   D++W        I+PLL EY L 
Sbjct: 734 RLSTLNDEISGDEKNLGPGYRIGHSFFCPM--DGRAPDEVWYRAVINSEIKPLLDEYWLD 791

Query: 532 GFRKTNEIMNQLRE 545
              K N ++  L E
Sbjct: 792 DEDKVNSLIAALTE 805

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 9/85 (10%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIA----KEMGCSDDEMAFVQFHPSYDYTDFVEGLRPV 213
           L+  KN++L G PG GKT++A+ +A    KE+  +  +M  VQFH SY Y DF++G RP 
Sbjct: 539 LQDKKNVILQGPPGVGKTYVAKKLAYLLMKEVDSARVQM--VQFHQSYSYEDFIQGYRP- 595

Query: 214 RDSDNFGFELRNGVFKDFCAKALQN 238
             SD+  FELRNG F  FC KA ++
Sbjct: 596 --SDDGHFELRNGHFFQFCRKAQRD 618
>gi|146320708|ref|YP_001200419.1| GTPase subunit of restriction endonuclease [Streptococcus suis
           98HAH33]
 gi|145691514|gb|ABP92019.1| GTPase subunit of restriction endonuclease [Streptococcus suis
           98HAH33]
          Length = 223

 Score = 96.3 bits (238), Expect = 6e-18,   Method: Composition-based stats.
 Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 22/172 (12%)

Query: 368 TKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPE 427
           + NY FI+DEINRG++SKI GE F  I+   RG+        Q +  D     + F +PE
Sbjct: 44  SHNYFFIMDEINRGNLSKILGEWFMLIENDKRGK------SLQLLYSD-----EQFSIPE 92

Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAK-----ETME 481
           N+YIIG MN  DRS+  +D+A+RRRF++ ++ P   T    D  + ++  K       +E
Sbjct: 93  NLYIIGMMNTADRSLALLDYALRRRFAFFDIKPGFSTTGFKDYQANLKNEKFDRLISCVE 152

Query: 482 RLNKAIEETEGLGSAYMIGPAYFRKLG----ENGDDFDKLWKMNIEPLLREY 529
           +LN+AI   E LG ++ IG +YF  L     E G   + + +  + PLL+EY
Sbjct: 153 KLNQAISTEEVLGDSFCIGHSYFCGLSAEVLEQG-LLEAIVEYELIPLLKEY 203
>gi|145223785|ref|YP_001134463.1| ATPase associated with various cellular activities, AAA_5
           [Mycobacterium gilvum PYR-GCK]
 gi|145216271|gb|ABP45675.1| ATPase associated with various cellular activities, AAA_5
           [Mycobacterium gilvum PYR-GCK]
          Length = 700

 Score = 95.9 bits (237), Expect = 7e-18,   Method: Composition-based stats.
 Identities = 64/163 (39%), Positives = 90/163 (55%), Gaps = 17/163 (10%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           YV +IDEINRG+I KIFGEL   I+   RG    +  Q   + +   PF     VP+NVY
Sbjct: 507 YVVVIDEINRGNIPKIFGELITLIEKDKRG----LTVQ---LPQSGAPFA----VPKNVY 555

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEET 490
           IIGTMN  DRS+  +D A+RRRF ++E+ P D++ +             ++ LN AI + 
Sbjct: 556 IIGTMNTADRSIHLLDTALRRRFQFIELLP-DSDLLEGHTVGALALDAFLDGLNDAIRQK 614

Query: 491 EGLGSAYMIGPAYFRKLGE---NGDDFDKLWKMNIEPLLREYL 530
              G    IG A F + GE     +DF  +++  + PLL+EYL
Sbjct: 615 --FGRDKQIGHAMFFQHGEIIDKPEDFAAVFRYELLPLLQEYL 655
>gi|149019244|ref|ZP_01834606.1| endonuclease, putative [Streptococcus pneumoniae SP23-BS72]
 gi|147931114|gb|EDK82093.1| endonuclease, putative [Streptococcus pneumoniae SP23-BS72]
          Length = 342

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Composition-based stats.
 Identities = 47/83 (56%), Positives = 67/83 (80%), Gaps = 2/83 (2%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
           L ++ NL+L+GAPGTGKT++A+ IAKE+   ++D++ FVQFHPSYDYTDFVEGLRPV + 
Sbjct: 253 LLKSPNLILSGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312

Query: 217 DN-FGFELRNGVFKDFCAKALQN 238
           D    F L++G+FKDF +++ +N
Sbjct: 313 DGAIEFRLQDGIFKDFLSESKRN 335
>gi|119714076|ref|YP_919218.1| ATPase associated with various cellular activities, AAA_5
           [Nocardioides sp. JS614]
 gi|119525985|gb|ABL79355.1| ATPase associated with various cellular activities, AAA_5
           [Nocardioides sp. JS614]
          Length = 899

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 22/179 (12%)

Query: 362 EVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKD 421
           E    + K +V +IDEINR +I+K+FGEL+F ++  YRG   +V   Y           +
Sbjct: 695 EARNAEGKPFVLVIDEINRANIAKVFGELYFLLE--YRGS--EVELLYSE--------GE 742

Query: 422 GFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELS--CVEEAK-- 477
            F +P+N++IIGTMN  DRS+  +D AMRRRF ++ +   D  ++   L+  C +  +  
Sbjct: 743 RFSLPDNLFIIGTMNTADRSIALLDAAMRRRFVFLSMD-TDEPALSGVLARWCADNQRPP 801

Query: 478 ---ETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDD-FDKLWKMNIEPLLREYLRG 532
              +  +RLN  + +  GL  +   GP+YF + G +     ++LW+  + P+L E+  G
Sbjct: 802 GLAQLRDRLNAEMVK-RGLDKSLAFGPSYFMRDGSDTQGALERLWRRELRPMLVEHHYG 859

 Score = 70.1 bits (170), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 31/78 (39%), Positives = 44/78 (56%)

Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEMAFVQFHPSYDYTDFVEGLRPVRDSD 217
           L + K +VL G PGTGKT++ Q + +  G  + + A VQFHP+Y Y DFVEG RP  +  
Sbjct: 619 LNERKQVVLDGPPGTGKTYLVQHLLEACGVVEGQSALVQFHPTYSYEDFVEGFRPTTEGG 678

Query: 218 NFGFELRNGVFKDFCAKA 235
                +R G  +    +A
Sbjct: 679 GATLAVRPGPLRRIADEA 696
>gi|110799098|ref|YP_695439.1| McrB domain protein [Clostridium perfringens ATCC 13124]
 gi|110673745|gb|ABG82732.1| McrB domain protein [Clostridium perfringens ATCC 13124]
          Length = 587

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 68/167 (40%), Positives = 93/167 (55%), Gaps = 16/167 (9%)

Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYR-GERG--KVNTQYQNIIEDSDPFKDGFFV 425
           KNYV IIDEINRG+ISKIFGEL   I+   R GE+   KV   Y N         + F V
Sbjct: 368 KNYVLIIDEINRGNISKIFGELITLIEDDKRLGEKNELKVTLPYSN---------ERFGV 418

Query: 426 PENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNK 485
           P+N+YI+GTMN  DRS+  +D A+RRRF + E  P   E +L E +C    +E +  +N+
Sbjct: 419 PKNLYILGTMNTADRSIALLDTALRRRFEFFEYMPK--EELLPEDACGINLREFLRVINE 476

Query: 486 AIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRG 532
            IE        + IG +YF K     ++   + K  + PL++EY  G
Sbjct: 477 RIEYL--FDREHTIGHSYFLKEDLTFEELVSIMKNKVIPLVQEYFYG 521
>gi|108797806|ref|YP_638003.1| ATPase associated with various cellular activities, AAA_5
           [Mycobacterium sp. MCS]
 gi|119866899|ref|YP_936851.1| ATPase associated with various cellular activities, AAA_5
           [Mycobacterium sp. KMS]
 gi|108768225|gb|ABG06947.1| ATPase associated with various cellular activities, AAA_5
           [Mycobacterium sp. MCS]
 gi|119692988|gb|ABL90061.1| ATPase associated with various cellular activities, AAA_5
           [Mycobacterium sp. KMS]
          Length = 609

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Composition-based stats.
 Identities = 95/331 (28%), Positives = 146/331 (44%), Gaps = 61/331 (18%)

Query: 239 FKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFK-TSGTKNSFS-------------- 283
           F++++  +ER   E    E++++  +E I+E T    T G KN  +              
Sbjct: 281 FRNTDPWVERFGDEAP--EVIDEGDDETIEEETATSITYGIKNIIADGCFLSEQTLTGYL 338

Query: 284 -IVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSGKDIQAH-------FHRK 335
             VE  +  I    P   KT L K     LI   D++  ++S   +Q H       F R 
Sbjct: 339 DAVERKKNLILQGPPGTGKTWLAKRLGRALIG-QDSSDLLQS---VQFHPTLSYEDFVRG 394

Query: 336 HRTQQD---SYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFF 392
            R   D   S +  L+  I K+A   P           Y+ +I+EINRG++++IFGEL  
Sbjct: 395 WRPAGDGRLSLVDGLFLDIIKKAESNPG--------SKYILVIEEINRGNLAQIFGELLT 446

Query: 393 AIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRR 452
            ++   R     +   Y+   E         ++PEN+YIIGTMN  DRS+  +DFA+RRR
Sbjct: 447 LLEADKRDPAEALTLTYRRTGEPP------VYIPENLYIIGTMNLADRSLAIVDFALRRR 500

Query: 453 FSWVEVTPN---------DTESMLDELSCVEEAKETMERLNKAIEETEGLGSAYMIGPAY 503
           F++ ++ P           T + +DE   +    E +  LN+ I E   LG  Y IG ++
Sbjct: 501 FAFADLAPQFNSSWRQWVSTRNGIDE-EILASLAERIGVLNQKITEDRSLGEQYRIGHSF 559

Query: 504 FRKLGENGDDFDKLW-----KMNIEPLLREY 529
           F    +   D    W     +  I PLL EY
Sbjct: 560 FTPGHDTKVDDPSQWIRHVVEQEIRPLLAEY 590

 Score = 67.8 bits (164), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 5/87 (5%)

Query: 154 YIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSD--DEMAFVQFHPSYDYTDFVEGLR 211
           Y++ +E+ KNL+L G PGTGKT++A+ + + +   D  D +  VQFHP+  Y DFV G R
Sbjct: 337 YLDAVERKKNLILQGPPGTGKTWLAKRLGRALIGQDSSDLLQSVQFHPTLSYEDFVRGWR 396

Query: 212 PVRDSDNFGFELRNGVFKDFCAKALQN 238
           P  D       L +G+F D   KA  N
Sbjct: 397 PAGDGR---LSLVDGLFLDIIKKAESN 420
>gi|48477100|ref|YP_022806.1| 5-methylcytosine-specific restriction enzyme B [Picrophilus
           torridus DSM 9790]
 gi|48429748|gb|AAT42613.1| 5-methylcytosine-specific restriction enzyme B [Picrophilus
           torridus DSM 9790]
          Length = 523

 Score = 93.6 bits (231), Expect = 3e-17,   Method: Composition-based stats.
 Identities = 73/202 (36%), Positives = 114/202 (56%), Gaps = 26/202 (12%)

Query: 370 NYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENV 429
           NYV IIDEINRGDIS+IFGEL   ID   R +        +  I     F+  F VP+N+
Sbjct: 310 NYVMIIDEINRGDISRIFGELITLIDEDKRSDDSSGGFSIKLPI-----FQKDFSVPKNL 364

Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAK-----ETMER-- 482
           YIIGTMND DRS+  +D A+RRRF ++++ P+   +++ + + + + K     ET+ +  
Sbjct: 365 YIIGTMNDTDRSIALLDLALRRRFVFLKIEPDI--NVVKKWTGIYDDKYPGFSETVSKFF 422

Query: 483 --LNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWK----MNIEPLLREYLRGFRKT 536
             LN+ I +T+  GS ++IG  +F+ L    DD  ++ +      I PLL+E   G   +
Sbjct: 423 MTLNEMILKTK--GSDFLIGHGFFKDLTLKADDPYRILRYIFVYKIIPLLQEIYYG---S 477

Query: 537 NEIMNQL-REAYVGEKEEEHSN 557
           N+I+ ++  +    EK+E   N
Sbjct: 478 NDILYEIVLKGKFFEKKENDGN 499
>gi|153012112|ref|YP_001373323.1| GTPase subunit of restriction endonuclease-like protein
           [Ochrobactrum anthropi ATCC 49188]
 gi|151564000|gb|ABS17494.1| GTPase subunit of restriction endonuclease-like protein
           [Ochrobactrum anthropi ATCC 49188]
          Length = 722

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 73/193 (37%), Positives = 107/193 (55%), Gaps = 21/193 (10%)

Query: 363 VSKVDTKNYVF-----IIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDS 416
           + +  TKN VF     IIDEINRG+ISKI GE    I+P  R G +  + T    I+  S
Sbjct: 485 LERTPTKNDVFRKRVLIIDEINRGNISKILGETITLIEPSKRLGTKEALTT----ILPYS 540

Query: 417 DPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEA 476
              K  F VP  ++IIGTMN  DRS+ ++D A+RRRF + E+ P  T+    E++ V+ A
Sbjct: 541 ---KTTFGVPVGLHIIGTMNTADRSLASIDMALRRRFVFEEIEPQTTQLEGVEIAGVDLA 597

Query: 477 KETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKM---NIEPLLREY-LRG 532
            + +  +N  IE    L   + +G AYF  L +  DD D+L ++    I PLL+EY    
Sbjct: 598 -QLLSVMNARIEAL--LDRDHRLGHAYFLNL-QASDDIDQLKELFSRRIVPLLKEYFFDD 653

Query: 533 FRKTNEIMNQLRE 545
           +R+   ++N  R+
Sbjct: 654 WRRIRLVLNDQRK 666
>gi|104782352|ref|YP_608850.1| hypothetical protein PSEEN3305 [Pseudomonas entomophila L48]
 gi|95111339|emb|CAK16059.1| conserved hypothetical protein [Pseudomonas]
          Length = 675

 Score = 93.2 bits (230), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 18/222 (8%)

Query: 342 SYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGE 401
           S+  +L  + K+  A    + V + + K +V IIDEINRG++S+IFGEL   I+   R  
Sbjct: 347 SWADLLSYLEKQGVAPVVPLVVKQDERKPHVLIIDEINRGNVSRIFGELITLIEASKR-- 404

Query: 402 RGKVNTQYQNIIEDSDPF-KDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTP 460
                   Q  +    P+ K  F VP NVYIIGTMN  DRS+  +D A+RRRF + E+ P
Sbjct: 405 -----EGAQEALSVELPYSKKPFSVPSNVYIIGTMNTADRSLAGLDIALRRRFVFREMPP 459

Query: 461 NDTESMLDELSCVE--EAKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENG--DDFDK 516
                +LD +  VE  +    +  LN  IE    L   + +G AYF  L E+   +    
Sbjct: 460 R--AELLDGV-MVEGVDIGLLLRALNLRIEAL--LDRDHCLGHAYFMPLREDARLERLAL 514

Query: 517 LWKMNIEPLLREY-LRGFRKTNEIMNQLREAYVGEKEEEHSN 557
           +++  I PLL+EY    +++   +MN  R+A      +E +N
Sbjct: 515 IFRNQILPLLQEYFFEDWQRIQWVMNDHRKADSDRFVQEQAN 556
>gi|118031290|ref|ZP_01502745.1| ATPase associated with various cellular activities, AAA_5
           [Burkholderia phymatum STM815]
 gi|117983179|gb|EAU97562.1| ATPase associated with various cellular activities, AAA_5
           [Burkholderia phymatum STM815]
          Length = 798

 Score = 93.2 bits (230), Expect = 5e-17,   Method: Composition-based stats.
 Identities = 91/330 (27%), Positives = 142/330 (43%), Gaps = 60/330 (18%)

Query: 240 KDSEKPIERLQKEGSVREILEDFI-------------------EEAIDEGTKFKTSGTKN 280
           KD EK   R Q  GS  E L D I                   E  I++G          
Sbjct: 470 KDFEK---RWQIRGSAVEALADIIAVPQAVDSSSAGVSAMYTVESIIEDGCFIPQEELSA 526

Query: 281 SFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNN--ISVKSGKDIQAH-FHRKHR 337
              +++N    I    P   KT L K     L++  D +  +SV+    +    F R  R
Sbjct: 527 MLRLLKNKSNLILQGPPGTGKTWLAKRLGYALLNRKDYSRLVSVQFQPSLSYEDFVRGWR 586

Query: 338 TQQDSYIFVLYNIIKK---QAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAI 394
              D  + ++  +  +   QA + P         + YV +I+EINRG+ +++FGEL   +
Sbjct: 587 PGADGRLDLIDGVFLEAIAQAQRSP---------EPYVVVIEEINRGNPAQVFGELLTLL 637

Query: 395 DPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFS 454
           +   R E   +   Y    E+        ++P+N+Y+IGTMN  DRS+  +D A+RRRF+
Sbjct: 638 EHDKRKEEEALRPAYVRSPEER------IYIPKNLYVIGTMNVADRSLALIDLALRRRFA 691

Query: 455 WVEVTPNDTESMLDELSCV-------EEAKET---MERLNKAIEETEGLGSAYMIGPAYF 504
           +  +TP       D   C+       ++A +    ++RLN+ I +   LG  + IG ++ 
Sbjct: 692 FATLTPALGSQWRD--WCMTHGGFSNDDANDISMRIQRLNERITKDRSLGEQFRIGHSFV 749

Query: 505 RKLGENGDDFDKLW-----KMNIEPLLREY 529
               E   D  + W     K  IEPLLREY
Sbjct: 750 TPAQEAKIDNARAWFAEVVKSEIEPLLREY 779

 Score = 60.5 bits (145), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 5/91 (5%)

Query: 147 PTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDD--EMAFVQFHPSYDYT 204
           P  + +  + LL+   NL+L G PGTGKT++A+ +   +    D   +  VQF PS  Y 
Sbjct: 520 PQEELSAMLRLLKNKSNLILQGPPGTGKTWLAKRLGYALLNRKDYSRLVSVQFQPSLSYE 579

Query: 205 DFVEGLRPVRDSDNFGFELRNGVFKDFCAKA 235
           DFV G RP  D      +L +GVF +  A+A
Sbjct: 580 DFVRGWRPGADGR---LDLIDGVFLEAIAQA 607
>gi|109671972|ref|ZP_01374215.1| putative endonuclease [Campylobacter concisus 13826]
 gi|112800840|gb|EAT98184.1| thiamine-phosphate pyrophosphorylase [Campylobacter concisus 13826]
          Length = 590

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 33/218 (15%)

Query: 361 VEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGK---------------- 404
           +E +K   K Y F+ DEINR ++S++FGEL   ++   R    K                
Sbjct: 359 LEKNKEKAKKYYFVADEINRAELSRVFGELLLCLEEDKRLRFDKDGNLQGMLVKTANSSL 418

Query: 405 VNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSW--------- 455
            N +   +  D +  +  F VPEN+Y IGTMNDID+S+++ D A+RRRF W         
Sbjct: 419 WNNEKHAVYVDKETGEGYFGVPENLYFIGTMNDIDKSIDSFDMALRRRFVWKRYRCDYDV 478

Query: 456 -----VEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEGLG--SAYMIGPAYFRKLG 508
                 ++  + + +  D  + ++   E  + +N+ I   +GLG   +Y +G +YF K  
Sbjct: 479 IADHFAKLINSKSNAKPDTETYIQTYIELCKDINEYITSEKGLGLDDSYELGHSYFLKPK 538

Query: 509 E-NGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLRE 545
           +    +  +LW  +I PLL+EYLR      +I  +L +
Sbjct: 539 KLTKSEISRLWNEHISPLLKEYLRTQYSGKDIETRLND 576

 Score = 73.2 bits (178), Expect = 5e-11,   Method: Composition-based stats.
 Identities = 43/95 (45%), Positives = 61/95 (64%), Gaps = 6/95 (6%)

Query: 160 QNKNLVLTGAPGTGKTFMAQAI--AKEMGCSDDEMAFVQFHPSYDYTDFVEGLRPVR-DS 216
           ++KN++L GAPGTGKT+  +    AK+    + E   VQFHPSY Y DF++G++P+  ++
Sbjct: 277 ESKNIILYGAPGTGKTYQTKQTIEAKKQIKENCEYKIVQFHPSYSYEDFMDGVKPIGIEN 336

Query: 217 DNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQK 251
               FELRNGVFK  C  A   FK+ EK  E+ +K
Sbjct: 337 GAMKFELRNGVFKQMCIDA---FKELEKNKEKAKK 368
>gi|148549822|ref|YP_001269924.1| ATPase associated with various cellular activities, AAA_5
           [Pseudomonas putida F1]
 gi|148513880|gb|ABQ80740.1| ATPase associated with various cellular activities, AAA_5
           [Pseudomonas putida F1]
          Length = 862

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 19/178 (10%)

Query: 358 KPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDS 416
           KP    +  D +  V IIDEINRG+IS+IFGEL   I+P  R GE   ++          
Sbjct: 618 KPQASSAVTDAR--VLIIDEINRGNISRIFGELITLIEPSKRAGEEEALSVVL------- 668

Query: 417 DPF-KDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVE- 474
            P+ K  F VP N+++IGTMN  DRS+  +D A+RRRF + E+ P     +LD++     
Sbjct: 669 -PYSKQRFSVPSNLHLIGTMNTTDRSLAGLDMALRRRFVFQEMPPR--PELLDDVVVQGL 725

Query: 475 EAKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENG--DDFDKLWKMNIEPLLREYL 530
              + +  +N+ IE    L   + +G AYF  L ++G  +  + +++  I PLL+EY 
Sbjct: 726 NIGQLLRVMNQRIEVL--LDRDHCLGHAYFMPLQDDGSLEHLEAIFRSQILPLLQEYF 781
>gi|113866039|ref|YP_724528.1| 5-Methylcytosine-specific restriction enzyme B [Ralstonia eutropha
           H16]
 gi|113524815|emb|CAJ91160.1| 5-Methylcytosine-specific restriction enzyme B [Ralstonia eutropha
           H16]
          Length = 792

 Score = 91.7 bits (226), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 64/174 (36%), Positives = 90/174 (51%), Gaps = 19/174 (10%)

Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPEN 428
           + +  +IDEINRG+ISKIFGEL   I+P  R           N +  + P  DGF VP N
Sbjct: 552 QRFAMVIDEINRGNISKIFGELITLIEPDKR-------EGADNAVSVTLPSGDGFSVPSN 604

Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCV-----EEAKETMERL 483
           V IIGTMN  DRS+  +D A+RRRF +V V P+  +     L+ +     E+  +    L
Sbjct: 605 VDIIGTMNTADRSLALLDTALRRRFEFVPVMPDARDESGAPLAGLRVTLGEQVIDVPRML 664

Query: 484 NKAIEETEGL-GSAYMIGPAYFRKLGE--NGDD----FDKLWKMNIEPLLREYL 530
           +   +  E L    + IG AYF  L +  +GD+      +++   I PLL EY 
Sbjct: 665 DAINQRVEALYDRDHCIGHAYFTTLAKFPDGDERLVALQQVFSTRILPLLEEYF 718
>gi|23126777|ref|ZP_00108663.1| COG1401: GTPase subunit of restriction endonuclease [Nostoc
           punctiforme PCC 73102]
          Length = 529

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 29/165 (17%)

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDG--FFVPENV 429
           V IIDEINR +++++FGEL + +             +Y+N      P   G  F +PENV
Sbjct: 367 VLIIDEINRANLAQVFGELMYLL-------------EYRN---REIPLAGGNTFRIPENV 410

Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELS--CVEEAKETMERLNKA 486
            IIGTMN  DRS+ N+D A+RRRF+++E+ PN D      +     VE     +++LN+A
Sbjct: 411 RIIGTMNTADRSIANIDHALRRRFAFIELRPNYDVLRRYHQKRGFAVEGLINILQQLNQA 470

Query: 487 IEETEGLGSAYMIGPAYFRKLGEN-GDDFDKLWKMNIEPLLREYL 530
           I +       Y IG ++F  L +N  +D D +W M IEP L EY 
Sbjct: 471 IADKN-----YEIGISFF--LTDNLREDMDDIWPMEIEPYLEEYF 508

 Score = 72.8 bits (177), Expect = 7e-11,   Method: Composition-based stats.
 Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)

Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLR 211
           ++I  + + K ++L+G+PGTGKTF+A+ +A+ + G SD     +QFHP+Y Y DF++G+R
Sbjct: 276 RWIRTINRKKQIILSGSPGTGKTFIAKHLAEHLIGGSDGFSELLQFHPTYSYEDFIQGIR 335

Query: 212 PVRDSDNFGFELRNGVFKDFCAKA 235
           P        + L  G F  FC +A
Sbjct: 336 PQSQDGQLTYPLVPGRFLKFCKEA 359
>gi|126656651|ref|ZP_01727865.1| putative restriction enzyme [Cyanothece sp. CCY0110]
 gi|126621871|gb|EAZ92579.1| putative restriction enzyme [Cyanothece sp. CCY0110]
          Length = 540

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 64/177 (36%), Positives = 94/177 (53%), Gaps = 31/177 (17%)

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
           + IIDEINR ++S++FGEL + ++  YR E  K+    Q            F +P+NVYI
Sbjct: 369 ILIIDEINRANLSQVFGELMYLLE--YREEEIKLAGSDQK-----------FKIPKNVYI 415

Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPN--------DTESMLDELSCVEEAKETMERL 483
           IGTMN  DRS+  +D A+RRRF+++ + PN                +  +E     +E L
Sbjct: 416 IGTMNTADRSIALVDHALRRRFAFIPIKPNYDILRRYHQKHKTNYNIEFIESLINILEEL 475

Query: 484 NKAIEETEGLGSAYMIGPAYFRKLGEN-GDDFDKLWKMNIEPLLREYLRGFRKTNEI 539
           NK I +++     Y IG ++F  L E   DD + +W M IEP L EY   F +T +I
Sbjct: 476 NKTINDSD-----YEIGVSFF--LTETLKDDLEDIWTMEIEPYLEEYF--FDETGKI 523

 Score = 79.0 bits (193), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 15/221 (6%)

Query: 142 VRNAEPTRKY------AKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEM-AF 194
           +R+ +P   Y       +YI+ L++ K+++  G+PGTGKT++A+ IAK +  S D     
Sbjct: 260 IRDMKPQETYIEETQLEQYIDTLKRKKHIIFQGSPGTGKTYLAKHIAKHLTSSGDGFHEL 319

Query: 195 VQFHPSYDYTDFVEGLRPVRDSD-NFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
           +QFHPSY Y DF++G+RP    D N  + +  G F  FC +A +        I+ + +  
Sbjct: 320 IQFHPSYSYEDFIQGIRPQTSPDKNLNYSMVPGRFLTFCEEAEEKEGMCILIIDEINR-A 378

Query: 254 SVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELI 313
           ++ ++  + +        + K +G+   F I +N    + +    N   R + L    L 
Sbjct: 379 NLSQVFGELMYLLEYREEEIKLAGSDQKFKIPKN----VYIIGTMNTADRSIALVDHALR 434

Query: 314 DLMDNNISVKSGKDIQAHFHRKHRTQQD-SYIFVLYNIIKK 353
                 I +K   DI   +H+KH+T  +  +I  L NI+++
Sbjct: 435 RRF-AFIPIKPNYDILRRYHQKHKTNYNIEFIESLINILEE 474
>gi|156449126|ref|ZP_02055509.1| ATPase associated with various cellular activities, AAA_5
           [Methylobacterium chloromethanicum CM4]
 gi|156191663|gb|EDO23849.1| ATPase associated with various cellular activities, AAA_5
           [Methylobacterium chloromethanicum CM4]
          Length = 723

 Score = 90.9 bits (224), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 15/163 (9%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPFKDGFFVPENV 429
           +V +IDEINR +ISK+FGEL   I+P  R G  G++  +            D F +P+N+
Sbjct: 516 FVLVIDEINRANISKVFGELITLIEPDKRLGRPGEITVRLP-------ASGDSFGIPDNL 568

Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELS--CVEEAKETMERLNKAI 487
           +I+GTMN  DRS+  +D A+RRRFS+VE+ P+    +L E    C  +    +  +N  I
Sbjct: 569 HIVGTMNTADRSIALLDTALRRRFSFVELMPD--PGLLAEAGERCGVDLVALLTGINARI 626

Query: 488 EETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
           E        + IG AYF        D D + +  + PLL EY 
Sbjct: 627 EYL--FDREHQIGHAYFMHCASR-TDVDDVMRHRVIPLLAEYF 666

 Score = 58.5 bits (140), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 38/100 (38%), Positives = 47/100 (47%), Gaps = 22/100 (22%)

Query: 163 NLVLTGAPGTGKTFMAQAIAKEM--GCSDD----------------EMAFVQFHPSYDYT 204
           NL+L G PGTGKT+   A A  +  G + D                ++ FV FH SY Y 
Sbjct: 232 NLILYGPPGTGKTYRTAAEAVRLCDGATPDTREGTMARYRGLVEAGQIRFVTFHQSYAYE 291

Query: 205 DFVEGLRP----VRDSDNFGFELRNGVFKDFCAKALQNFK 240
           DFVEGLRP      D   F  E R G+F++    A Q  K
Sbjct: 292 DFVEGLRPETGTSEDGTGFRLEPRRGIFREIATLAEQARK 331
>gi|56479205|ref|YP_160794.1| AAA ATPase superfamily protein, fragment [Azoarcus sp. EbN1]
 gi|56315248|emb|CAI09893.1| AAA ATPase superfamily protein, fragment [Azoarcus sp. EbN1]
          Length = 353

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 25/190 (13%)

Query: 353 KQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNI 412
           K A+K PS          +V +I+EINRG+ ++IFGEL   ++ G R     +   Y   
Sbjct: 157 KAASKDPSAR--------FVVVIEEINRGNPAQIFGELLTLLEAGKRTPNEALELCY--- 205

Query: 413 IEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLD---- 468
             D+D  +    +PEN+Y++GTMN  DRS+  +D A+RRRF++V + P  + +  D    
Sbjct: 206 -PDADGKRRPVHIPENLYVVGTMNIADRSLALVDLALRRRFAFVGLEPRLSPAWRDWVVK 264

Query: 469 ----ELSCVEEAKETMERLNKAIEETEGLGSAYMIG-----PAYFRKLGENGDDFDKLWK 519
               + + V + +  +  LN  I     LG  + IG     PA+  + G+  + F ++ +
Sbjct: 265 ECAVDPALVADIERRIAELNDQIAADARLGKQFRIGHSYVTPAHRLEAGDTKNWFRQIVE 324

Query: 520 MNIEPLLREY 529
             I PLL EY
Sbjct: 325 TEIGPLLDEY 334

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 5/78 (6%)

Query: 155 IELLEQNKNLVLTGAPGTGKTFMAQAIA-KEMGCSDD-EMAFVQFHPSYDYTDFVEGLRP 212
           ++ L   KNL+L G PGTGKT++A+ +A   MG  DD ++  VQFHP+  Y DFV G RP
Sbjct: 80  LDRLRTKKNLILQGPPGTGKTWLAKRLAFALMGQKDDSKVRAVQFHPNLSYEDFVRGWRP 139

Query: 213 VRDSDNFGFELRNGVFKD 230
             +       L +GVF +
Sbjct: 140 TGEGK---LSLADGVFME 154
>gi|115378762|ref|ZP_01465907.1| ATPase family associated with various cellular activities (AAA),
           putative [Stigmatella aurantiaca DW4/3-1]
 gi|115364246|gb|EAU63336.1| ATPase family associated with various cellular activities (AAA),
           putative [Stigmatella aurantiaca DW4/3-1]
          Length = 948

 Score = 90.5 bits (223), Expect = 3e-16,   Method: Composition-based stats.
 Identities = 56/187 (29%), Positives = 98/187 (52%), Gaps = 26/187 (13%)

Query: 368 TKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPE 427
           T+ +V +IDEINRG + ++FGEL + ++  YR ER ++               D F +P 
Sbjct: 769 TERFVLLIDEINRGALPRVFGELLYLLE--YREERVRLAGS-----------GDFFELPT 815

Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDEL-------SCVEEAKETM 480
           N+Y+IGTMN  DRS+  +D A+RRRF +V + P D E +   L          + A + +
Sbjct: 816 NLYLIGTMNSADRSIAQIDVALRRRFHFVRMDP-DAEILRRNLLKWDVAPDVCDWAVQGL 874

Query: 481 ERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIM 540
           E +N  I  +   G  + IG ++F     +    +++W+ +I P+L +    F  + +++
Sbjct: 875 EAVNARIARSP--GREFCIGHSFFMDKDLDPGRVERIWRHDIAPMLEDC---FYDSPQVV 929

Query: 541 NQLREAY 547
            +LR  +
Sbjct: 930 PELRALF 936

 Score = 76.6 bits (187), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 9/96 (9%)

Query: 157 LLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
           LLE  + L+L G PGTGKT++A+ +A+    ++     VQFHP+Y Y DFVEGLRP  D+
Sbjct: 683 LLEHRRQLILYGPPGTGKTYIARELARYQAGAETRCERVQFHPAYSYEDFVEGLRPQVDA 742

Query: 217 DNFG---FELRNGVFKDFCAKALQNFKDSEKPIERL 249
              G   +E R G+ K    +A         P ER 
Sbjct: 743 QAPGGLRYEYRPGILKSLAERA------QASPTERF 772
>gi|118444185|ref|YP_877506.1| endonuclease, putative [Clostridium novyi NT]
 gi|118134641|gb|ABK61685.1| endonuclease, putative [Clostridium novyi NT]
          Length = 301

 Score = 89.7 bits (221), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 69/176 (39%), Positives = 95/176 (53%), Gaps = 16/176 (9%)

Query: 360 SVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR-GERG--KVNTQYQNIIEDS 416
           S  + + +  NYV +IDEINRG+ISKIFGEL   I+   R GE+   KV   Y N     
Sbjct: 72  SNSIEESENNNYVLVIDEINRGNISKIFGELITLIEDDKRIGEKNELKVVLPYSN----- 126

Query: 417 DPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEA 476
                 F VP N+YI+GTMN  DRS+  +D A+RRRF ++E  PN  ES+L E       
Sbjct: 127 ----KKFGVPNNLYILGTMNTADRSIALLDNALRRRFDFIEYMPN--ESILPENVDGINL 180

Query: 477 KETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRG 532
           K+ ++ +N  IE        + IG AYF K   + +    + K  + PL++EY  G
Sbjct: 181 KKFLKVINDRIEYL--FDREHTIGHAYFIKDNIDFNSLVLIMKNKVIPLIQEYFYG 234
>gi|49482329|ref|YP_039553.1| putative restriction enzyme [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49240458|emb|CAG39114.1| putative restriction enzyme [Staphylococcus aureus subsp. aureus
           MRSA252]
          Length = 567

 Score = 89.4 bits (220), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 18/166 (10%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           Y  IIDEINRG++SKIFGELF  I+   R E  ++   Y           + F VP N+Y
Sbjct: 391 YFLIIDEINRGNLSKIFGELFMLIESDKRDE--ELILLYSG---------ERFSVPRNIY 439

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDEL------SCVEEAKETMERLN 484
           I+G MN  DRS+  +D+A+RRRF++  + P    +   +L      + +E     +E LN
Sbjct: 440 IVGMMNTADRSLAILDYALRRRFAFYNMQPAFHTTKFKKLLKAINNTELESVINCIEGLN 499

Query: 485 KAIEETEGLGSAYMIGPAYFRKLG-ENGDDFDKLWKMNIEPLLREY 529
           K I + + LG+ ++IG +YF  +   + D+   + +  I P+L EY
Sbjct: 500 KEIVQDDMLGNGFVIGHSYFSNIECIDKDELSNIIEFEIIPMLEEY 545

 Score = 72.4 bits (176), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 7/95 (7%)

Query: 151 YAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCS--DDEMAFVQFHPSYDYTDFVE 208
           Y + ++LL + +N++L G PG GKTF+A+ +A  +  S   + +  +QFH SY Y DF+ 
Sbjct: 301 YDRLVQLLRRKRNVILQGPPGVGKTFLAKRLAYSLIGSKCKERIKLIQFHQSYSYEDFIM 360

Query: 209 GLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSE 243
           G RP       GFEL  G F DFC KA ++ +D+E
Sbjct: 361 GYRPTSS----GFELTTGTFYDFCKKADKD-RDNE 390
>gi|55379062|ref|YP_136912.1| hypothetical protein rrnAC2392 [Haloarcula marismortui ATCC 43049]
 gi|55231787|gb|AAV47206.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 544

 Score = 89.0 bits (219), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 32/217 (14%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           YV +IDEINRG++++IFGE    ++   RG      T + ++      F     +P N+Y
Sbjct: 330 YVLLIDEINRGNLAQIFGETITLLEEDKRG------TLHVDLAHSGGSFT----IPPNLY 379

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPN----------DTESMLD-----ELSCVEE 475
           +IGTMN  DRSV  +D A+RRRF +++  P+          DTE  L      E S +E+
Sbjct: 380 VIGTMNTADRSVALVDAALRRRFRFIDFPPDYGVARSRFGFDTEYDLTSAARGERSDLEQ 439

Query: 476 AK----ETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLR 531
            +    + +E+LN+ I E   LG    IG +Y     ++       W+  I PLL EY  
Sbjct: 440 LQALSIQAVEQLNETIIELPDLGKGKQIGHSYLLVDPDDEQALVDAWRYEILPLLEEYFY 499

Query: 532 G--FRKTNEIMNQLREAYVG-EKEEEHSNIPELTDEN 565
           G   R   E+ NQ  ++ V  E+E+     PE   E+
Sbjct: 500 GQLSRIRQELFNQNGDSLVDWEREQIKDFDPETLRES 536

 Score = 59.3 bits (142), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 6/98 (6%)

Query: 151 YAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAK------EMGCSDDEMAFVQFHPSYDYT 204
           YA     LE+   +V  G PGTGKT+ AQ  A+      +    + ++  V FHPSY Y 
Sbjct: 224 YANIARQLEEVGQVVFYGPPGTGKTYNAQQFARWWLHNLQSEPRESQVRSVTFHPSYTYE 283

Query: 205 DFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDS 242
           DF+EGL      ++  ++++ G FK  C  A   ++++
Sbjct: 284 DFIEGLTANATENSVSYDIKPGKFKAICEDARVAYQET 321
>gi|145294212|ref|YP_001137033.1| hypothetical protein cgR_0169 [Corynebacterium glutamicum R]
 gi|57158026|dbj|BAD84000.1| hypothetical protein [Corynebacterium glutamicum]
 gi|140844132|dbj|BAF53131.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 473

 Score = 88.2 bits (217), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 31/175 (17%)

Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPEN 428
           + Y FIIDEINRG+ISKIFGEL   I+   RG+  ++   Y+N         + F +P N
Sbjct: 296 RPYFFIIDEINRGNISKIFGELLMLIESDKRGQ--ELRLLYKN---------ETFSIPAN 344

Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTP------------NDTESMLDELSCVEEA 476
           V+IIG MN  DRS+  +D+A+RRRF + E+ P            +    ML+ L  V   
Sbjct: 345 VHIIGMMNTADRSLAVLDYALRRRFGFFELAPAYESAGFAQWIQSADNPMLNRLVSV--- 401

Query: 477 KETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDD--FDKLWKMNIEPLLREY 529
              +  LN+ I +   LG  + IG ++  +   N D+     + +  I PLL EY
Sbjct: 402 ---ILDLNREIIDDPTLGQGFAIGHSFLSQPVGNADEAWLYSVVEDEIIPLLNEY 453

 Score = 70.5 bits (171), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 14/146 (9%)

Query: 150 KYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKE-MGCSD-DEMAFVQFHPSYDYTDFV 207
           +Y +   LL + KN++L G PG GKT+ A+ +A   MG  D   +  +QFH SY Y DF+
Sbjct: 205 RYVRLRSLLGRKKNVILAGPPGVGKTYAAKRLAYSIMGTKDPSRVQMIQFHQSYSYEDFM 264

Query: 208 EGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKP----IERLQKEGSVREILEDFI 263
            G RP   ++N GF +  G F  FC KA  +  D+++P    I+ + + G++ +I  + +
Sbjct: 265 MGYRP---TENGGFIISEGPFYRFCEKARAD--DADRPYFFIIDEINR-GNISKIFGELL 318

Query: 264 E--EAIDEGTKFKTSGTKNSFSIVEN 287
              E+   G + +      +FSI  N
Sbjct: 319 MLIESDKRGQELRLLYKNETFSIPAN 344
>gi|92109628|ref|YP_571915.1| ATPase associated with various cellular activities, AAA_5
           [Nitrobacter hamburgensis X14]
 gi|91802710|gb|ABE65083.1| ATPase associated with various cellular activities, AAA_5
           [Nitrobacter hamburgensis X14]
          Length = 734

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 81/295 (27%), Positives = 136/295 (46%), Gaps = 34/295 (11%)

Query: 263 IEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNN--I 320
           +E  IDEG   + +  + +  +++  +  +    P   KT L K     LI   D +  +
Sbjct: 445 VEAIIDEGCFLERATLEQAIDLLKTKKNLVLQGPPGTGKTWLAKRLGYALIGEKDPSRLM 504

Query: 321 SVKSGKDIQAH-FHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVD-TKNYVFIIDEI 378
           +V+    +    F R +R    + + ++        A   +V V+K +  + YV +I+EI
Sbjct: 505 AVQFQPSLSYEDFVRGYRPNGTTGLQLV------DGAFLEAVAVAKAEPARPYVLVIEEI 558

Query: 379 NRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDI 438
           NRG+ ++IFGEL   ++   R E   +   Y   I  ++       VP N+Y++GTMN  
Sbjct: 559 NRGNPAQIFGELLTLLEADKRSESEALRLAYP--ISQTERVH----VPPNLYVVGTMNLA 612

Query: 439 DRSVENMDFAMRRRFSWVEVTPN---------DTESMLDELSCVEEAKETMERLNKAIEE 489
           DRS+  +D A+RRRF++V + PN               DEL  ++   + +  LN+ I  
Sbjct: 613 DRSLALVDLALRRRFAFVNLNPNFGAAWQQYCKARGAPDEL--LQAIGQAIVALNEVIAA 670

Query: 490 TEGLGSAYMIGPAYFRKLGENGDDFD-KLWKMN-----IEPLLREYLRGFRKTNE 538
            + LG+ + +G ++     EN D    K W  N     I+PLL EY    R   E
Sbjct: 671 DQSLGAQFSVGHSFLTP-AENMDAARWKTWIGNVILTEIKPLLLEYWYDARAKAE 724

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 5/83 (6%)

Query: 155 IELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDD--EMAFVQFHPSYDYTDFVEGLRP 212
           I+LL+  KNLVL G PGTGKT++A+ +   +    D   +  VQF PS  Y DFV G RP
Sbjct: 464 IDLLKTKKNLVLQGPPGTGKTWLAKRLGYALIGEKDPSRLMAVQFQPSLSYEDFVRGYRP 523

Query: 213 VRDSDNFGFELRNGVFKDFCAKA 235
              +   G +L +G F +  A A
Sbjct: 524 ---NGTTGLQLVDGAFLEAVAVA 543
>gi|119490044|ref|ZP_01622668.1| component of 5-methylcytosine-specific restriction enzyme McrBC
           [Lyngbya sp. PCC 8106]
 gi|119454196|gb|EAW35348.1| component of 5-methylcytosine-specific restriction enzyme McrBC
           [Lyngbya sp. PCC 8106]
          Length = 531

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 20/180 (11%)

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
           V IIDEINRG++++IFGEL + ++  YR E   + +  Q            F + ENV I
Sbjct: 369 VLIIDEINRGNVARIFGELMYLLE--YRNEEIYLTSGEQ------------FGISENVRI 414

Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETE 491
           IGTMN  DRS+  +D A+RRRF+++ ++PN  E +      ++ + E + +  K + +  
Sbjct: 415 IGTMNTADRSIALVDHALRRRFAFISLSPN-YEVLRRYHRGIDFSVEGLIKTLKQVNQQI 473

Query: 492 GLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAYVGEK 551
           G  S Y IG ++F +  +   + + +WK+ IEP L EY   F      +NQ R   V ++
Sbjct: 474 G-NSHYEIGISFFLQ-PDITQEIESIWKLEIEPYLEEY---FFDQASTVNQFRWEQVKQQ 528

 Score = 73.6 bits (179), Expect = 4e-11,   Method: Composition-based stats.
 Identities = 32/83 (38%), Positives = 56/83 (67%), Gaps = 1/83 (1%)

Query: 154 YIELLEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRP 212
           +++ LE+ + ++ +G PGTGKT++A+ +AK +    +  +  VQFHP+Y Y DFV+G+RP
Sbjct: 279 WLQALERKQQIIFSGPPGTGKTYIAKKLAKYLVSGGNGFIDVVQFHPAYAYEDFVQGIRP 338

Query: 213 VRDSDNFGFELRNGVFKDFCAKA 235
            ++ +   + L NG F +FC +A
Sbjct: 339 QKNGEQLDYPLVNGRFLNFCQQA 361
>gi|126438633|ref|YP_001060513.1| AAA_5 ATPase [Burkholderia pseudomallei 668]
 gi|126218126|gb|ABN81632.1| AAA_5 ATPase [Burkholderia pseudomallei 668]
          Length = 666

 Score = 87.0 bits (214), Expect = 3e-15,   Method: Composition-based stats.
 Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 19/170 (11%)

Query: 370 NYVFIIDEINRGDISKIFGELFFAIDPGYRGERG---KVNTQYQNIIEDSDPFKDGFFVP 426
           NYV +IDEINRGD+S++ G L  +++   R           QY    ED        ++P
Sbjct: 413 NYVIVIDEINRGDLSRVLGPLISSLEADKRAGSDFPIGYELQYPQNGEDGR-----LYLP 467

Query: 427 ENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT--ESMLDEL--SCVEEAKETMER 482
            N++I+GTMN  DR+V  +D+A+RRRF +VE+ P      + +DEL   C    +   +R
Sbjct: 468 SNLHILGTMNSTDRNVALVDYALRRRFDFVEIPPEPELLATTVDELPIDCAALLRTLNQR 527

Query: 483 LNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRG 532
           +   +++   LG  +++G         N D  ++L K  I P LREY  G
Sbjct: 528 IAYLLDDNHRLGHGFLMG------CRNNRDVCERLAKKVI-PQLREYFFG 570
>gi|145954110|ref|ZP_01803117.1| hypothetical protein CdifQ_04002412 [Clostridium difficile
           QCD-32g58]
          Length = 550

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 14/165 (8%)

Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVP 426
           +++NYV IIDEINRG++SKIFGEL   +      E  K  T+    I      K+ F +P
Sbjct: 334 ESENYVLIIDEINRGNVSKIFGELITLL------EDDKRLTKSNQTIVKLPYSKEKFSLP 387

Query: 427 ENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAKETMERLNK 485
            N+YI+GTMN  D+S+  +D A+RRRF++ E+ P+ D  S++D +    + ++ +  +NK
Sbjct: 388 PNLYIVGTMNTSDKSIALLDIALRRRFNFEEIMPDYDLLSIVDGI----DIRKMLYTINK 443

Query: 486 AIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
            IE        ++IG AY   + EN +D   +++  I PLL+EY 
Sbjct: 444 RIEFL--YDRDHVIGQAYLLAV-ENINDIVVVFRSKIIPLLQEYF 485
>gi|134297904|ref|YP_001111400.1| ATPase associated with various cellular activities, AAA_5
           [Desulfotomaculum reducens MI-1]
 gi|134050604|gb|ABO48575.1| ATPase associated with various cellular activities, AAA_5
           [Desulfotomaculum reducens MI-1]
          Length = 629

 Score = 86.7 bits (213), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 35/168 (20%)

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDG--FFVPENV 429
           V IIDEINR ++S++FGEL + ++  YR              +   P   G  F +P NV
Sbjct: 467 VLIIDEINRANLSRVFGELMYLLE--YR--------------DAEIPLASGGTFSLPRNV 510

Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-------DTESMLDELSCVEEAKETMER 482
            IIGTMN  DRS+  +DFA+R RF+++ + PN        T++ L     VE   ET+ +
Sbjct: 511 RIIGTMNTADRSIALVDFALRIRFAFIPLQPNYEVLRRYHTKTGLG----VEGLIETLMK 566

Query: 483 LNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
           LN+ I +       Y+IG ++F +  + G+  + +W+M IEP + E+ 
Sbjct: 567 LNRRINDPN-----YVIGVSFFLR-ADLGEQLEDIWRMEIEPYIEEFF 608

 Score = 72.8 bits (177), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)

Query: 149 RKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFV 207
           R+  ++I+ +E+    +L G PGTGKTF+A+A+A+ + G SD  +  VQFHP+Y Y DF+
Sbjct: 371 RELERWIKAIERKGQAILYGPPGTGKTFLAKALARHLIGGSDGLVDLVQFHPAYAYEDFI 430

Query: 208 EGLRPVRDSDN-FGFELRNGVFKDFCAKA 235
           +G+RP  D++    + +  G    FC KA
Sbjct: 431 QGIRPQVDNEGILKYPVLPGRLLQFCQKA 459
>gi|86748715|ref|YP_485211.1| AAA_5 ATPase [Rhodopseudomonas palustris HaA2]
 gi|86571743|gb|ABD06300.1| AAA_5 ATPase [Rhodopseudomonas palustris HaA2]
          Length = 834

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 14/163 (8%)

Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFK-DGFFVPE 427
           +++V IIDEINR +ISK+FGEL   ++P  R  R        N ++   P+  D F VP 
Sbjct: 622 ESFVLIIDEINRANISKVFGELITLLEPDKRIGR-------PNALKVRLPYSGDLFGVPA 674

Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAI 487
           N++IIGTMN  DRS+  +D A+RRRF + E+ P+   S+L  +  V+ ++  +  +N+ I
Sbjct: 675 NLHIIGTMNTADRSIALLDTALRRRFEFRELMPD--PSLLGIVDGVDLSR-LLATINQRI 731

Query: 488 EETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
           E        + IG AYF        D D++ +  + PLL EY 
Sbjct: 732 EYL--FDREHQIGHAYFISCKSRA-DIDEVMRCKVIPLLAEYF 771
>gi|30250447|ref|NP_842517.1| AAA ATPase superfamily [Nitrosomonas europaea ATCC 19718]
 gi|30139288|emb|CAD86440.1| AAA ATPase superfamily [Nitrosomonas europaea ATCC 19718]
          Length = 740

 Score = 86.3 bits (212), Expect = 5e-15,   Method: Composition-based stats.
 Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 25/190 (13%)

Query: 353 KQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNI 412
           K A+K PS          +V +I+EINRG+ ++IFGEL   ++ G R     +   Y   
Sbjct: 544 KAASKDPS--------SKFVVVIEEINRGNPAQIFGELLTLLEAGKRTPNEALELCY--- 592

Query: 413 IEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLD---- 468
             D+D  +    +PEN+Y++GTMN  DRS+  +D A+RRRF++V + P   +   D    
Sbjct: 593 -PDADGKRRPVHIPENLYVVGTMNIADRSLALVDLALRRRFAFVGLEPRLGQVWRDWVVK 651

Query: 469 ----ELSCVEEAKETMERLNKAIEETEGLGSAYMIG-----PAYFRKLGENGDDFDKLWK 519
               +   V + +  +  LN  I     LG  + IG     PA+  + G+    F ++ +
Sbjct: 652 ECAVDPGLVADIERRIAELNDQIAADARLGKQFRIGHSYVTPAHRLEAGDTKKWFLQVVE 711

Query: 520 MNIEPLLREY 529
             I PLL EY
Sbjct: 712 TEIGPLLDEY 721

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 5/80 (6%)

Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIA-KEMGCSDD-EMAFVQFHPSYDYTDFVEGL 210
           + ++ L   KNL+L G PGTGKT++A+ +A   MG  DD ++  VQFHP+  Y DFV G 
Sbjct: 465 RLLDRLRTKKNLILQGPPGTGKTWLAKRLAFALMGQKDDSKVRAVQFHPNLSYEDFVRGW 524

Query: 211 RPVRDSDNFGFELRNGVFKD 230
           RP  +       L +GVF +
Sbjct: 525 RPTGEGK---LSLADGVFME 541
>gi|67922732|ref|ZP_00516235.1| ATPaseATPas [Crocosphaera watsonii WH 8501]
 gi|67855442|gb|EAM50698.1| ATPaseATPas [Crocosphaera watsonii WH 8501]
          Length = 506

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 28/174 (16%)

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
           + IIDEINR ++S++FGEL + ++  YR E  ++    Q            F +PENVYI
Sbjct: 347 ILIIDEINRANLSQVFGELMYLLE--YREEEIQLAGSDQT-----------FKIPENVYI 393

Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSC----VEEAKETMERLNKA 486
           IGTMN  DRS+  +D A+RRRF+++ + PN D      + +     +E     +  LNK 
Sbjct: 394 IGTMNTADRSIALVDHALRRRFAFIPIKPNYDILRKYHQKNSPNYDIESLINILIELNKT 453

Query: 487 IEETEGLGSAYMIGPAYFRKLGEN-GDDFDKLWKMNIEPLLREYLRGFRKTNEI 539
           I +       Y IG ++F  L E+  D+ + +W M IEP L EY   F +T++I
Sbjct: 454 INDPH-----YEIGVSFF--LTESLLDELEDIWTMEIEPYLEEYF--FDETDKI 498

 Score = 75.1 bits (183), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 31/255 (12%)

Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDE--MAFVQFHPSYDYTDFVEGL 210
           +YI+ L++ K+++  G+PGTGKT++A+ IA  +  S++      +QFHPSY Y DF++G+
Sbjct: 254 QYIKTLKRKKHIIFQGSPGTGKTYLAKHIANHLTSSENNGFYELIQFHPSYSYEDFIQGI 313

Query: 211 RPVRDSD-NFGFELRNGVFKDFCAKALQNFKDSE-------KPIERL---QKEGSVREIL 259
           RP   +D N  + +  G F +FC KA    KD E         I R    Q  G +  +L
Sbjct: 314 RPQTSTDGNLEYSMIPGRFLNFCEKA----KDCEGMCILIIDEINRANLSQVFGELMYLL 369

Query: 260 EDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNN 319
           E + EE I      + +G+  +F I EN    + +    N   R + L    L       
Sbjct: 370 E-YREEEI------QLAGSDQTFKIPEN----VYIIGTMNTADRSIALVDHALRRRF-AF 417

Query: 320 ISVKSGKDIQAHFHRKHRTQQD--SYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDE 377
           I +K   DI   +H+K+    D  S I +L  + K        + VS   T++ +  +++
Sbjct: 418 IPIKPNYDILRKYHQKNSPNYDIESLINILIELNKTINDPHYEIGVSFFLTESLLDELED 477

Query: 378 INRGDISKIFGELFF 392
           I   +I     E FF
Sbjct: 478 IWTMEIEPYLEEYFF 492
>gi|119486444|ref|ZP_01620502.1| putative restriction enzyme [Lyngbya sp. PCC 8106]
 gi|119456346|gb|EAW37477.1| putative restriction enzyme [Lyngbya sp. PCC 8106]
          Length = 508

 Score = 85.9 bits (211), Expect = 6e-15,   Method: Composition-based stats.
 Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 31/187 (16%)

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
           V IIDEINR ++S++FGEL + ++  YR E+         +   ++PF     +P NVYI
Sbjct: 342 VLIIDEINRANLSQVFGELMYLLE--YRREK-------ICLAGSNEPFG----IPPNVYI 388

Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPN-------DTESMLDELSCVEEAKETMERLN 484
           IGTMN  DRS+  +D A+RRRFS++ ++PN            + E   +EE  + ++ LN
Sbjct: 389 IGTMNTADRSIALVDHALRRRFSFITLSPNYDVLRNYHEHRFISEF--IEELIDILKYLN 446

Query: 485 KAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLR 544
           + I++       + +G ++F  + +  ++ + +W M IEP L EY   F    +I+   R
Sbjct: 447 QTIDDPH-----HELGISFFL-VDDLENNIEDIWTMEIEPYLEEY---FYDQRDIIKNFR 497

Query: 545 EAYVGEK 551
            + +  K
Sbjct: 498 WSEIKNK 504

 Score = 70.1 bits (170), Expect = 4e-10,   Method: Composition-based stats.
 Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)

Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLR 211
           ++++++ + K ++  G PGTGKTF+A+ IAK + G +      VQFHP+Y Y DF+ G+R
Sbjct: 251 RWVKIINRKKQVIFQGPPGTGKTFIAKKIAKHLIGGTQGFSELVQFHPAYTYEDFMLGIR 310

Query: 212 PVRDSDNFGFELRNGVFKDFCAKA 235
           P        + + +G F +FC KA
Sbjct: 311 PDTKDGQLTYSMVSGRFLEFCKKA 334
>gi|126699711|ref|YP_001088608.1| putative restriction enzyme [Clostridium difficile 630]
 gi|115251148|emb|CAJ68979.1| putative restriction enzyme [Clostridium difficile 630]
          Length = 646

 Score = 85.9 bits (211), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 14/165 (8%)

Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVP 426
           +++NYV IIDEINRG++SKIFGEL   +      E  K  T+    I      K+ F +P
Sbjct: 430 ESENYVLIIDEINRGNVSKIFGELITLL------EDDKRLTKSNQTIVKLPYSKEKFSLP 483

Query: 427 ENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAKETMERLNK 485
            N+YI+GTMN  D+S+  +D A+RRRF++ E+ P+ D  S++D +    + ++ +  +NK
Sbjct: 484 PNLYIVGTMNTSDKSIALLDIALRRRFNFEEIMPDYDLLSIVDGI----DIRKMLYTINK 539

Query: 486 AIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
            IE        ++IG AY   + EN +D   +++  I PLL+EY 
Sbjct: 540 RIEFL--YDRDHVIGQAYLLAV-ENINDIVVVFRSKIIPLLQEYF 581
>gi|149369914|ref|ZP_01889765.1| 5-Methylcytosine-specific restriction enzyme B [unidentified
            eubacterium SCB49]
 gi|149356405|gb|EDM44961.1| 5-Methylcytosine-specific restriction enzyme B [unidentified
            eubacterium SCB49]
          Length = 1091

 Score = 85.5 bits (210), Expect = 8e-15,   Method: Composition-based stats.
 Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 20/167 (11%)

Query: 370  NYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KDGFFVPEN 428
            NY   IDEINRG++S IFGEL   I+   R           N +E   P+ KD F VP N
Sbjct: 878  NYAIFIDEINRGNVSAIFGELITLIEKDKRAGA-------TNALEVQLPYSKDKFSVPIN 930

Query: 429  VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNK 485
            ++I GTMN  DRSVE +D A+RRRF++ E+ PN++   +   ++ +  E  K   +R+  
Sbjct: 931  LHIYGTMNTADRSVEALDSALRRRFTFKELMPNESLLYDKQFEDFTLEEVLKTINDRIEI 990

Query: 486  AIEETEGLGSAYMIGPAYFRKLGENGD--DFDKLWKMNIEPLLREYL 530
             ++    +G +Y +         E+GD      ++K  I PLL+EY 
Sbjct: 991  LVDRDHTIGHSYFMAV-------ESGDTESLSIVFKDKIIPLLQEYF 1030
>gi|84390144|ref|ZP_00991406.1| GTPase subunit of restriction endonuclease-like [Vibrio splendidus
           12B01]
 gi|84376798|gb|EAP93673.1| GTPase subunit of restriction endonuclease-like [Vibrio splendidus
           12B01]
          Length = 829

 Score = 84.0 bits (206), Expect = 2e-14,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 20/173 (11%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           Y   IDEINRG+ISKIFGEL   ++   R  +   +    N+     PF+    VP NV 
Sbjct: 571 YAMFIDEINRGNISKIFGELISLVETDKR--KDGAHPMSVNLAYSGRPFR----VPSNVD 624

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPN----DTESMLD-----ELSCVEEAKETME 481
           IIGTMN  DRS+  MD A+RRRF ++E+ P+    +++ ++D      +   E  K   +
Sbjct: 625 IIGTMNTADRSIALMDTALRRRFEFIEMMPDIRLFESDGLIDIGNNQHIDLAELLKSLND 684

Query: 482 RLNKAIEETEGLGSAYMIGPAYFRKLGENGDD----FDKLWKMNIEPLLREYL 530
           R+    +    LG A+   PAY      N D+      K +   I PLL+EY 
Sbjct: 685 RIEALYDREHTLGHAFFF-PAYNAAKAGNHDEALSNLAKAFIGKIVPLLQEYF 736
>gi|77458885|ref|YP_348391.1| GTPase subunit of restriction endonuclease-like [Pseudomonas
           fluorescens PfO-1]
 gi|77382888|gb|ABA74401.1| GTPase subunit of restriction endonuclease-like [Pseudomonas
           fluorescens PfO-1]
          Length = 678

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 18/171 (10%)

Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFK-DGFFVPE 427
           + Y  +IDEINRG+ISKIFGEL   I+   R        +Y+  +  + P+    F VP 
Sbjct: 443 QQYAMVIDEINRGNISKIFGELITLIEADKRK-----GGEYE--VTLTLPYSGKSFSVPS 495

Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKE-TMERLNKA 486
           NV +IGTMN  DRS+  +D A+RRRF +VE+ P+    +L E+  V    E  ++RL  A
Sbjct: 496 NVDVIGTMNTADRSLALVDTALRRRFEFVELMPD--PRVLTEIKVVSGEHEIQLDRLLTA 553

Query: 487 IE-ETEGL-GSAYMIGPAYFRKLGE-----NGDDFDKLWKMNIEPLLREYL 530
           +    E L    + IG AYF  L         +    +++  I PLL EY 
Sbjct: 554 LNARIEALYDREHTIGHAYFTPLKNLVPEARFEALVTIFRTRILPLLEEYF 604
>gi|73670717|ref|YP_306732.1| hypothetical protein Mbar_A3271 [Methanosarcina barkeri str.
           Fusaro]
 gi|72397879|gb|AAZ72152.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
          Length = 705

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 17/165 (10%)

Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPFKDGFFVPE 427
           K YV IIDEINR +ISK+FGEL   ++   R G + ++        E++D     F VP 
Sbjct: 526 KKYVLIIDEINRANISKVFGELITLLEEDKRLGAKNELRVSIPG--EETD-----FGVPP 578

Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAI 487
           N+Y+IGTMN  D+S+  +D A+RRRF +    P+  +  +DELS      + ++ +NK I
Sbjct: 579 NLYVIGTMNTADKSIAMIDIALRRRFEFRGYFPDYDK--VDELS-----GKILKHINKQI 631

Query: 488 EETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRG 532
            E +   + Y+IG  YF    +  + F K+ +  + PLL EY  G
Sbjct: 632 YERKK-SADYLIGHGYFMNGDKTPETF-KVIENKVIPLLMEYFSG 674
>gi|20090962|ref|NP_617037.1| hypothetical protein MA2119 [Methanosarcina acetivorans C2A]
 gi|19916046|gb|AAM05517.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
           C2A]
          Length = 700

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 18/189 (9%)

Query: 346 VLYNIIKKQAAKK-PSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGK 404
           + Y I K+       S++  +V  + YV IIDEINR +ISK+FGEL   ++   R     
Sbjct: 495 IFYRICKRAKQNYLQSLDQPEVPLERYVLIIDEINRANISKVFGELITLLEEDKR----- 549

Query: 405 VNTQYQNIIEDSDPFKD-GFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT 463
                +N +  S P ++ GF +P NVY+IGTMN  D+S+  +D A+RRRF +    P+  
Sbjct: 550 --LGAKNELRLSIPGEETGFGIPPNVYVIGTMNTADKSIAMIDIALRRRFEFQGYFPD-- 605

Query: 464 ESMLDELSCVEEAKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIE 523
            S +D LS      E +  +N  I   +   + Y+IG  YF   G+   +  K+ +  + 
Sbjct: 606 YSKVDGLS-----GEILRYINNEIYNRKK-SADYLIGHGYFMN-GDEPPETSKVLQNKVI 658

Query: 524 PLLREYLRG 532
           PLL EY  G
Sbjct: 659 PLLMEYFSG 667
>gi|75198123|ref|ZP_00708193.1| COG1401: GTPase subunit of restriction endonuclease [Escherichia
           coli HS]
 gi|157069430|gb|ABV08685.1| putative ATPase family associated with various cellular activities
           (AAA) [Escherichia coli HS]
          Length = 691

 Score = 80.9 bits (198), Expect = 2e-13,   Method: Composition-based stats.
 Identities = 66/174 (37%), Positives = 84/174 (48%), Gaps = 28/174 (16%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           Y   IDEINRG+ISKIFGEL   I+   R   G  N     +    D F     VP NV 
Sbjct: 446 YAIFIDEINRGNISKIFGELISLIEVDKRA--GMPNAMSLQLAYSGDHFS----VPGNVD 499

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAK-------ETMERL 483
           IIG MN  DRS+  MD A+RRRF +VE+ P        +LS + EAK         +E+L
Sbjct: 500 IIGAMNTADRSLALMDTALRRRFDFVEMMP--------DLSLLSEAKVKGIELESLLEKL 551

Query: 484 NKAIE----ETEGLGSAYMIGPAYFRKLGENGDDFDKL---WKMNIEPLLREYL 530
           N  IE        LG A+ +        G+    F +L   ++  I PLL+EY 
Sbjct: 552 NSRIEALYDREHTLGHAFFMPVKNALDAGDEEAAFKQLKIAFQKKIIPLLQEYF 605
>gi|10957435|ref|NP_051672.1| McrB-related protein [Deinococcus radiodurans R1]
 gi|6460864|gb|AAF12568.1|AE001826_37 McrB-related protein [Deinococcus radiodurans R1]
          Length = 969

 Score = 80.5 bits (197), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 63/195 (32%), Positives = 92/195 (47%), Gaps = 10/195 (5%)

Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPEN 428
           + +V IIDEINRG+ISKIFGEL   ++ G R   G        +     P      VP++
Sbjct: 752 RPHVLIIDEINRGNISKIFGELITLLESGKR--TGAPEALTVTLPLSRRPLS----VPQS 805

Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAKETMERLNKAI 487
           +Y+IGTMN  DRS+  +D A+RRRF +  V P  +   +LD      + ++ +  +N  I
Sbjct: 806 LYVIGTMNTADRSLTLLDAALRRRFVFRPVWPQPEVLPVLDLGGTALDLRKFLHVINDRI 865

Query: 488 EETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREY-LRGFRKTNEIMNQLREA 546
           E    L    +IG AY   L           +  I PLL EY    + K  E++    +A
Sbjct: 866 ERL--LSREQVIGHAYLLGLPATLGGVSSALRERILPLLEEYFFEDWSKIREVLGDESKA 923

Query: 547 YVGEKEEEHSNIPEL 561
              +      + PEL
Sbjct: 924 EALQFIHRSGSGPEL 938
>gi|89891074|ref|ZP_01202582.1| putative GTPase subunit of restriction endonuclease [Flavobacteria
           bacterium BBFL7]
 gi|89516718|gb|EAS19377.1| putative GTPase subunit of restriction endonuclease [Flavobacteria
           bacterium BBFL7]
          Length = 989

 Score = 79.7 bits (195), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 21/207 (10%)

Query: 364 SKVDTKN-YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KD 421
           +K D++N Y   IDEINRG++S IFGEL   I+   R          +N +    P+ K 
Sbjct: 763 AKNDSENRYAIFIDEINRGNVSAIFGELITLIETDKR-------KGCKNELAIKLPYSKK 815

Query: 422 GFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKE 478
            F VP N+ I GTMN  DRSVE +D A+RRRF + E+ PN        ++++   E  + 
Sbjct: 816 EFSVPSNLDIYGTMNTADRSVEALDTALRRRFEFKEMMPNYNVIENEKVNDIKLSEVLET 875

Query: 479 TMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNE 538
             ER+   I+    +G +Y +G     KL    ++        I PLL+EY  G     +
Sbjct: 876 INERIELLIDRDHTIGHSYFVGVDTVEKLANAFNN-------KIVPLLQEYFYG--DYGK 926

Query: 539 IMNQLREAYVGEKEEEHSNIPELTDEN 565
           I   L + +V +KE +  +  +   +N
Sbjct: 927 IGLVLGKGFVEKKENKQISFADFKYDN 953
>gi|113477076|ref|YP_723137.1| ATPase associated with various cellular activities, AAA_5
           [Trichodesmium erythraeum IMS101]
 gi|110168124|gb|ABG52664.1| ATPase associated with various cellular activities, AAA_5
           [Trichodesmium erythraeum IMS101]
          Length = 539

 Score = 78.2 bits (191), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 28/166 (16%)

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
           V IIDEINR ++S++FGEL + ++  YR  +  +               + F +P+NV I
Sbjct: 371 VLIIDEINRANLSQVFGELMYLLE--YRDAKIPLAGS-----------AELFSIPKNVRI 417

Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELS------CVEEAKETMERLNK 485
           IGTMN  DRS+  +D A+RRRF+++ ++P   E +L           VE   + +E +N+
Sbjct: 418 IGTMNTADRSIALVDHALRRRFAFITLSPK-YEILLQYYKEIETNFSVEGLTQLLEAVNQ 476

Query: 486 AIEETEGLGSAYMIGPAYFRKLGEN-GDDFDKLWKMNIEPLLREYL 530
            I +       Y +G ++F  L +N  ++   +W+M IEP L EY 
Sbjct: 477 EINDPN-----YQVGVSFF--LRKNIAEEIPDIWQMEIEPYLEEYF 515

 Score = 63.5 bits (153), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)

Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEM-AFVQFHPSYDYTDFVEGLR 211
           ++I  + + K  +  G PGTGKTF++Q +A+ +    D     +QFH +Y Y DF++G+R
Sbjct: 280 QWIRAINRKKQAIFQGPPGTGKTFLSQKLAQHLISRGDGFWELIQFHSAYTYEDFIQGIR 339

Query: 212 PVRDSDNFGFELRNGVFKDFCAKALQN 238
           P        + +  G F  FC KA  N
Sbjct: 340 PQSQDGKLTYPVVPGRFLQFCQKAALN 366
>gi|75187706|ref|ZP_00700973.1| COG1401: GTPase subunit of restriction endonuclease [Escherichia
           coli E24377A]
 gi|157077307|gb|ABV17015.1| putative ATPase family associated with various cellular activities
           (AAA) [Escherichia coli E24377A]
          Length = 685

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 64/171 (37%), Positives = 84/171 (49%), Gaps = 22/171 (12%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           Y   IDEINRG+ISKIFGEL   I+   R   G  N     +    D F     VP NV 
Sbjct: 440 YAIFIDEINRGNISKIFGELISLIEVDKRA--GMPNAMSLQLSYSGDYFS----VPANVD 493

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVE----EAKETMERLNKA 486
           IIG MN  DRS+  +D A+RRRF +VE+ P+     L  LS  +    E +  +E+LN  
Sbjct: 494 IIGAMNTADRSLALLDTALRRRFDFVEMMPD-----LSLLSGAKVKGIELESLLEKLNSR 548

Query: 487 IE----ETEGLGSAYMIGPAYFRKLGENGDDFDKL---WKMNIEPLLREYL 530
           IE        LG A+ +        G+    F +L   ++  I PLL+EY 
Sbjct: 549 IEALYDREHTLGHAFFMPVKNALDTGDEETAFKQLKIAFQKKIIPLLQEYF 599
>gi|88602580|ref|YP_502758.1| ATPase associated with various cellular activities, AAA_5
           [Methanospirillum hungatei JF-1]
 gi|88188042|gb|ABD41039.1| ATPase associated with various cellular activities, AAA_5
           [Methanospirillum hungatei JF-1]
          Length = 999

 Score = 77.0 bits (188), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
           +  +IDEINRGDIS+IFGEL   +      E+ K       I       +  F +P N++
Sbjct: 779 FYLVIDEINRGDISRIFGELITLL------EKDKRLLAPHEITTKLPSSRTRFGIPPNLF 832

Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPN----------DTESMLDELSCVEEAKETM 480
           +IGTMN  D+S+  +D A+RRRF ++E+ P+          D ES+L+  S       T+
Sbjct: 833 LIGTMNTADKSIALIDIALRRRFGFIEMMPDYDLLYRTLSSDDESLLEVYSIAIALLRTI 892

Query: 481 -ERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
            +R+ +  +    +G ++++     R   +   +   +W   I PLL EY 
Sbjct: 893 NQRILEEHDREHQIGHSFLLKLKDARTRDQAISELSMIWYHEIIPLLHEYF 943
>gi|93005767|ref|YP_580204.1| ATPase associated with various cellular activities, AAA_5
           [Psychrobacter cryohalolentis K5]
 gi|92393445|gb|ABE74720.1| ATPase associated with various cellular activities, AAA_5
           [Psychrobacter cryohalolentis K5]
          Length = 810

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 23/174 (13%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDG--FFVPEN 428
           YV +I+EINRG+ +++FGE+   ++   R     +   Y+          DG   ++P N
Sbjct: 626 YVIVIEEINRGNPAQVFGEMLTLLETDKRTPDEALELSYRKF--------DGERVYIPSN 677

Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLD--------ELSCVEEAKETM 480
           +Y+IGTMN  DRS+  +D A+RRRF+++++ P   +   D        + + +      +
Sbjct: 678 LYVIGTMNIADRSLALVDLALRRRFAFIDLEPTLGKPWHDWVQSKNGIDSTILNAIDSRI 737

Query: 481 ERLNKAIEETEGLGSAYMIGPAYFR-KLGENGDD----FDKLWKMNIEPLLREY 529
             LN+ I     LG+ + IG +Y    +G N  D    F ++ +  I PLL EY
Sbjct: 738 RALNEDIAADTSLGAQFQIGHSYVTPAVGMNITDAKEWFSEVVQTEIGPLLDEY 791

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)

Query: 147 PTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIA-KEMGCSDD-EMAFVQFHPSYDYT 204
           P  K    ++     KNL+L G PGTGKT++A+ +A   MG  DD ++  VQFHP+  Y 
Sbjct: 531 PKAKIEMILKRFRAKKNLILQGPPGTGKTWLAKRLAFALMGQRDDSKIRAVQFHPNLSYE 590

Query: 205 DFVEGLRP 212
           DF+ G RP
Sbjct: 591 DFIRGWRP 598
>gi|91216791|ref|ZP_01253755.1| GTPase subunit of restriction endonuclease-like protein
           [Psychroflexus torquis ATCC 700755]
 gi|91184952|gb|EAS71331.1| GTPase subunit of restriction endonuclease-like protein
           [Psychroflexus torquis ATCC 700755]
          Length = 641

 Score = 74.3 bits (181), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 21/175 (12%)

Query: 364 SKVDTKN-YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KD 421
           + +D  N Y   IDEINRG++S IFGEL   I+   R  +G  N     +     P+ K+
Sbjct: 415 AAIDPHNRYAIFIDEINRGNVSAIFGELITLIETDKR--KGAANEMRITL-----PYSKN 467

Query: 422 GFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESM----LDELSCVEEAK 477
            F VP N+ I GTMN  DRSVE +D A+RRRF + E+ P D E +    +D +   +  K
Sbjct: 468 IFSVPLNLDIYGTMNTADRSVEALDTALRRRFEFKEMMP-DLEVIENEEVDGILLTDVLK 526

Query: 478 ETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRG 532
              ER+   I+    +G +Y +     ++L    D F+      I PLL+EY  G
Sbjct: 527 TINERIELLIDRDHTIGHSYFVDVDTAQRL---ADAFNN----KIVPLLQEYFYG 574
>gi|93005083|ref|YP_579520.1| ATPase associated with various cellular activities, AAA_5
           [Psychrobacter cryohalolentis K5]
 gi|92392761|gb|ABE74036.1| ATPase associated with various cellular activities, AAA_5
           [Psychrobacter cryohalolentis K5]
          Length = 498

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 17/135 (12%)

Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPEN 428
           + Y  +IDEINR ++S++FGEL   I+P  R   G  N    ++      F     VP N
Sbjct: 246 QRYAMLIDEINRANVSRVFGELLSLIEPDKRA--GTPNAMTVSLAYSGRAFS----VPAN 299

Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTP----------NDTESMLDELSCVEEAKE 478
           V I  TMN  D S+  +D A+RRRF ++   P          N    ++DE  C+  AK 
Sbjct: 300 VDIYATMNTQDHSLAPLDMALRRRFRFINCPPQPELLPIINLNKGLEIVDEAECINLAK- 358

Query: 479 TMERLNKAIEETEGL 493
            +  LN  I +T G+
Sbjct: 359 VLTGLNHRISQTLGI 373
>gi|148653828|ref|YP_001280921.1| GTPase subunit of restriction endonuclease-like protein
           [Psychrobacter sp. PRwf-1]
 gi|148572912|gb|ABQ94971.1| GTPase subunit of restriction endonuclease-like protein
           [Psychrobacter sp. PRwf-1]
          Length = 481

 Score = 67.0 bits (162), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 25/195 (12%)

Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERG---KVNTQYQNIIEDSDPFKDGFFVPE 427
           Y  +IDEINR + +++FGEL   I+P  R        V   Y             F VP 
Sbjct: 225 YAMLIDEINRANTAQVFGELMSVIEPSKRAGGATPMSVRLAYSG---------RQFMVPS 275

Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT------ESMLDELSCVEEAKETME 481
           NV I  TMN  D S+  +D A RRRF +V   P+ +      +    E+   +      +
Sbjct: 276 NVDIYATMNTQDHSLAVLDMAFRRRFDFVTCYPDASLLSVLKDDAGKEVDLAQMMLSINQ 335

Query: 482 RLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMN 541
           RL     E   LG +Y +G    R+L +      +L++  I P +  ++   R    ++ 
Sbjct: 336 RLTALCGEQAQLGQSYFMGIDDIRQLAK------RLYR-QIVPQIMAFISLHRGEAYLLQ 388

Query: 542 QLREAYVGEKEEEHS 556
            L +   G+    +S
Sbjct: 389 SLHQILYGDNSVSYS 403
>gi|71064806|ref|YP_263533.1| probable endonuclease [Psychrobacter arcticus 273-4]
 gi|71037791|gb|AAZ18099.1| probable endonuclease [Psychrobacter arcticus 273-4]
          Length = 498

 Score = 65.9 bits (159), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 21/144 (14%)

Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPEN 428
           + Y  +IDEINR ++S++FGEL   I+P  R   G  N    N+      F     VP N
Sbjct: 246 QRYAMLIDEINRANVSRVFGELLSLIEPDKR--VGTANAMTVNLAYSGRTFG----VPAN 299

Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESM----LDELSCVEEAKETMER-- 482
           V I  TMN  D S+  +D A+RRRF ++   P+  E +    L + S +  A E+++   
Sbjct: 300 VDIYATMNTQDHSLAPLDMALRRRFRFINC-PSQPELLPIISLSKASKIPNAAESIDLAK 358

Query: 483 ----LNKAIEETEG----LGSAYM 498
               LN  I +T G    LG A++
Sbjct: 359 VLTGLNLRISQTLGIEAQLGHAFL 382
>gi|148653161|ref|YP_001280254.1| ATPase associated with various cellular activities, AAA_5
           [Psychrobacter sp. PRwf-1]
 gi|148572245|gb|ABQ94304.1| ATPase associated with various cellular activities, AAA_5
           [Psychrobacter sp. PRwf-1]
          Length = 655

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 37/113 (32%), Positives = 65/113 (57%), Gaps = 10/113 (8%)

Query: 352 KKQAAKKPSVEVSKVDTKN----YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNT 407
           K +    P +E+ K    N    YV +I+EINRG+ ++IFGE+   ++   R     +  
Sbjct: 519 KLELVDGPFMEMIKTAIANPNSKYVLVIEEINRGNPAQIFGEMLTLLETDKRTPEEALEL 578

Query: 408 QYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTP 460
            Y+  +E  +      ++P N+++IGTMN  DRS+  +D A+RRRF+++++ P
Sbjct: 579 SYK--MEKGERV----YIPSNLFVIGTMNIADRSLALVDLALRRRFAFIDLEP 625

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)

Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDD-EMAFVQFHPSYDYTDFVEGL 210
           + ++ L   KNL+L G PGTGKT+ A+ +A  + G  DD ++  VQFHP+  Y DF+ G 
Sbjct: 453 RILKRLRTKKNLILQGPPGTGKTWRAKRLAFALIGQKDDSKIRAVQFHPNLSYEDFIRGW 512

Query: 211 RPVRDSDNFGFELRNGVFKDFCAKALQN 238
           RP   S     EL +G F +    A+ N
Sbjct: 513 RP---SGAGKLELVDGPFMEMIKTAIAN 537
>gi|1149676|emb|CAA60208.1| mcrB [Clostridium perfringens]
          Length = 98

 Score = 62.4 bits (150), Expect = 8e-08,   Method: Composition-based stats.
 Identities = 43/107 (40%), Positives = 59/107 (55%), Gaps = 14/107 (13%)

Query: 385 KIFGELFFAIDPGYR-GERG--KVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRS 441
           KIFGEL   I+   R GE+   KV   Y N         + F VP+N+YI+GTMN  DRS
Sbjct: 1   KIFGELITLIEDDKRLGEKNQLKVTLPYSN---------ESFGVPKNLYILGTMNTADRS 51

Query: 442 VENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIE 488
           +  +D A+RRRF + E  P   E +L E +C    +E +  +N+ IE
Sbjct: 52  IALLDTALRRRFEFFEYMPK--EDLLPEDACGINLREFLRVINERIE 96
>gi|87125171|ref|ZP_01081018.1| AAA ATPase superfamily protein [Synechococcus sp. RS9917]
 gi|86167491|gb|EAQ68751.1| AAA ATPase superfamily protein [Synechococcus sp. RS9917]
          Length = 123

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 10/98 (10%)

Query: 415 DSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTE---------S 465
           D D       VPEN+++IGTMN  DRS+  +D  +RRRF+++++ P+ +E          
Sbjct: 7   DVDGVNRPVHVPENLFVIGTMNTADRSLAMVDLTLRRRFAFIDLEPSRSEPWGTWVVNQK 66

Query: 466 MLDELSCVEEAKETMERLNKAIEETEGLGSAYMIGPAY 503
            ++E S   E  + +++LN  I     +G A+ IG +Y
Sbjct: 67  QMEE-SAAREIGQRLKQLNAIISADSRIGQAFCIGHSY 103
>gi|94311600|ref|YP_584810.1| ATPase associated with various cellular activities, AAA_5
           [Ralstonia metallidurans CH34]
 gi|93355452|gb|ABF09541.1| ATPase associated with various cellular activities, AAA_5
           [Ralstonia metallidurans CH34]
          Length = 303

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 20/178 (11%)

Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
           V +IDE++R D+ ++FGE    ++   RG   ++ +     I            P N+ +
Sbjct: 138 VLVIDELSRTDVVRVFGEALTYLEKSKRGLSFQLASGRTTSI------------PNNLIM 185

Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT--ESMLDELSCVEEAKETMERLNKAIEE 489
           + TMN  DR VE MD A+ RRF+ + + P+    E +L   +  EE +  + R  + +  
Sbjct: 186 LATMNPWDRGVEEMDLALERRFARISIEPDPQALEIILSRSALTEERRLRVMRFFQTL-- 243

Query: 490 TEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
              +     IG AYF    +N D   +LW      L   + R  +++ E + ++R  +
Sbjct: 244 YRHVNPLCRIGHAYFLT-AQNDDSLKRLWD---NQLSFHFERILKRSPEELERIRNGW 297
>gi|77977894|ref|ZP_00833332.1| COG1401: GTPase subunit of restriction endonuclease [Yersinia
           intermedia ATCC 29909]
          Length = 651

 Score = 62.4 bits (150), Expect = 9e-08,   Method: Composition-based stats.
 Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 29/191 (15%)

Query: 359 PSVEVSKVDTKN----YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIE 414
           P V V K    N    YV II+EINRG+ ++IFGE    ++   R     +   Y    E
Sbjct: 452 PFVNVIKTAINNPVAKYVVIIEEINRGNPAQIFGETLTLMEADKRTPTEALALSYS---E 508

Query: 415 DSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESM-------- 466
           ++D   +  ++PEN+YIIGTMN  DRS+  +D A+RRRF+++++ P   ++         
Sbjct: 509 NTD---EKIYIPENLYIIGTMNIADRSLALLDLALRRRFAFIDLKPAFNDAWKNWVNHKF 565

Query: 467 ---LDELSCVEEAKETMERLNKAIEETEGLGSAYMIG-----PAYFRKLGENGDDFDKLW 518
              LD L+ +E     +  LN+ + +   LG  + IG     PA  +++ E    ++++ 
Sbjct: 566 AIDLDLLAIIE---SRLTALNEILAKDVTLGPQFCIGHSYVTPATGQQINEAQTWYEQVV 622

Query: 519 KMNIEPLLREY 529
              I PLL EY
Sbjct: 623 DTEICPLLAEY 633
>gi|111020925|ref|YP_703897.1| probable 5-methylcytosine-specific restriction enzyme B
           [Rhodococcus sp. RHA1]
 gi|110820455|gb|ABG95739.1| probable 5-methylcytosine-specific restriction enzyme B
           [Rhodococcus sp. RHA1]
          Length = 249

 Score = 61.6 bits (148), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%)

Query: 151 YAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSD---DEMAFVQFHPSYDYTDFV 207
           + + IE ++  KN++  G PGTGKT++A+ +   + C++   D M  +QFHPS  Y DFV
Sbjct: 55  WKRMIEAVKSKKNIIWQGPPGTGKTWLARRLGWVL-CNEPHSDRMTLLQFHPSMSYEDFV 113

Query: 208 EGLRPVRDSDNFGFELRNGVFKDFCAKALQNFK 240
            G RP  D       L +G        A Q+F+
Sbjct: 114 RGFRPGSDGK---LTLIDGPLLTAAQNARQDFR 143
>gi|91976450|ref|YP_569109.1| ATPase associated with various cellular activities, AAA_5
           [Rhodopseudomonas palustris BisB5]
 gi|91682906|gb|ABE39208.1| ATPase associated with various cellular activities, AAA_5
           [Rhodopseudomonas palustris BisB5]
          Length = 450

 Score = 60.8 bits (146), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 23/173 (13%)

Query: 362 EVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSD---P 418
           E++K +T   V +IDE +R D +++ GE               V T  +  + D D   P
Sbjct: 229 EIAKSETAPVVLVIDEFSRTDPARVLGE---------------VMTYMEGSLRDKDFYLP 273

Query: 419 FKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKE 478
                 +P N+  I TMN  DRSV+ +D AM RR++ V + P D   + D L     A E
Sbjct: 274 SGRRVRIPRNLIFIATMNPEDRSVDEIDAAMERRWAKVGLKP-DVRKLRDFL-VNNRADE 331

Query: 479 TMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLR 531
            M  +   ++   GL     IG A+FR + +      +LW   +  + R+  R
Sbjct: 332 LM--MGPTVDLFLGLQKHMEIGHAFFRTVKDPA-GLSRLWNNQLSYVFRKRFR 381

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)

Query: 139 INSVRNAEPTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIA-KEMGCSDDEMAFVQF 197
           ++ + + +P     + +  ++    ++LTGAPGTGK+F A+ IA K  G     +  VQF
Sbjct: 137 VSQIDDEDPILAQVRQLVEIDGWGGVLLTGAPGTGKSFYAREIAIKLTGGDRRRIREVQF 196

Query: 198 HPSYDYTDFVEGLRP 212
           HPSY Y DFVEG  P
Sbjct: 197 HPSYQYEDFVEGYVP 211
>gi|116217130|ref|ZP_01482944.1| hypothetical protein VchoR_02001119 [Vibrio cholerae RC385]
          Length = 379

 Score = 57.0 bits (136), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 24/160 (15%)

Query: 362 EVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR-----GERGKVNTQYQNIIEDS 416
           E +K   +  + IIDEINRG   ++FG    AI+   R     G+R +  TQ+  +++  
Sbjct: 126 EHAKGANRAALLIIDEINRGPAVQVFGGAIVAIESDKRLASDGGKRAE--TQFFEMLDPV 183

Query: 417 DPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPND-------------T 463
                 + +P ++YI+  MN  D SVE +D A  RR+  + + P++              
Sbjct: 184 SGDVIEYALPHDLYILAAMNQADASVEPLDVAFLRRWEPIRLEPDEAALRTFYGLGAKGV 243

Query: 464 ESMLDELSCVEEAKETMERLNKAIEETEGLGSAYMIGPAY 503
            ++ DE + V +A E   R   AI     LG     GP +
Sbjct: 244 NALPDEPAGVNDALEASVRAWSAINSQIALGR----GPKF 279
>gi|15611234|ref|NP_222885.1| putative restriction enzyme [Helicobacter pylori J99]
 gi|4154679|gb|AAD05745.1| putative restriction enzyme [Helicobacter pylori J99]
          Length = 448

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 12/109 (11%)

Query: 371 YVFIIDEINRGDISKIFGELFFAID------PGYR---GERGKVNTQYQNIIEDSDPFKD 421
           +V +IDEINRG++  IFGE+F  +D       G++    E    NT   NI+ +      
Sbjct: 230 HVLVIDEINRGNVPAIFGEIFQLLDRLKHDKDGFKKGSSEYAINNTDIANIVHNDK--NA 287

Query: 422 GFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDEL 470
              +P N++I+ TMN  D++V  +D A +RRFS +++  N  E++ D+ 
Sbjct: 288 SIRIPSNLWIVATMNTSDQNVFTLDTAFQRRFS-MQLVENSFENVDDDF 335
>gi|150421004|gb|EDN13289.1| GTPase subunit of restriction endonuclease [Vibrio cholerae RC385]
          Length = 384

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Composition-based stats.
 Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 24/160 (15%)

Query: 362 EVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR-----GERGKVNTQYQNIIEDS 416
           E +K   +  + IIDEINRG   ++FG    AI+   R     G+R +  TQ+  +++  
Sbjct: 131 EHAKGANRAALLIIDEINRGPAVQVFGGAIVAIESDKRLASDGGKRAE--TQFFEMLDPV 188

Query: 417 DPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPND-------------T 463
                 + +P ++YI+  MN  D SVE +D A  RR+  + + P++              
Sbjct: 189 SGDVIEYALPHDLYILAAMNQADASVEPLDVAFLRRWEPIRLEPDEAALRTFYGLGAKGV 248

Query: 464 ESMLDELSCVEEAKETMERLNKAIEETEGLGSAYMIGPAY 503
            ++ DE + V +A E   R   AI     LG     GP +
Sbjct: 249 NALPDEPAGVNDALEASVRAWSAINSQIALGR----GPKF 284
>gi|109672659|ref|ZP_01374895.1| restriction endonuclease [Campylobacter concisus 13826]
 gi|112801576|gb|EAT98920.1| polysulfide reductase chain C (Sulfur reductase chain C)
           [Campylobacter concisus 13826]
          Length = 412

 Score = 56.2 bits (134), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 2/92 (2%)

Query: 365 KVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKV--NTQYQNIIEDSDPFKDG 422
           K  T+ Y+ +IDEINRG+   IFGE+F  +D    G    V  N     I+   +     
Sbjct: 191 KNPTQKYLLVIDEINRGNAPAIFGEIFQLLDRDKDGNSVYVINNENIAKIVYGKNNTDKP 250

Query: 423 FFVPENVYIIGTMNDIDRSVENMDFAMRRRFS 454
             +P N++II TMN  D++V  +D A +RRF+
Sbjct: 251 IKIPSNLWIIATMNTSDQNVFTLDTAFQRRFT 282
>gi|30019094|ref|NP_830725.1| Type II restriction-modification system restriction subunit
           [Bacillus cereus ATCC 14579]
 gi|29894637|gb|AAP07926.1| Type II restriction-modification system restriction subunit
           [Bacillus cereus ATCC 14579]
          Length = 578

 Score = 55.8 bits (133), Expect = 7e-06,   Method: Composition-based stats.
 Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 4/105 (3%)

Query: 361 VEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERG---KVNTQYQNIIEDSD 417
           V   K    N+V II+EINR + + +FG++F  +D    GE       N    N +    
Sbjct: 363 VNALKYPKSNFVIIIEEINRANAAAVFGDVFQLLDRKDDGESEYTITFNADVTNYLRKEG 422

Query: 418 PFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPND 462
            F     +P+N+YI  TMN  D+ V  +D A +RR+S+ E  P D
Sbjct: 423 IFDLQIKIPKNLYIWATMNSADQGVTPLDTAFKRRWSF-EYMPID 466
  Database: nr
    Posted date:  Sep 17, 2007 11:41 AM
  Number of letters in database: 999,999,834
  Number of sequences in database:  2,976,859
  
  Database: /nucleus1/users/jsaw/ncbi/db/nr.01
    Posted date:  Sep 17, 2007 11:48 AM
  Number of letters in database: 894,087,890
  Number of sequences in database:  2,493,262
  
Lambda     K      H
   0.316    0.135    0.389 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,149,402,561
Number of Sequences: 5470121
Number of extensions: 95481087
Number of successful extensions: 318449
Number of sequences better than 1.0e-05: 125
Number of HSP's better than  0.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 317929
Number of HSP's gapped (non-prelim): 294
length of query: 565
length of database: 1,894,087,724
effective HSP length: 138
effective length of query: 427
effective length of database: 1,139,211,026
effective search space: 486443108102
effective search space used: 486443108102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)