BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= pPI0112
(565 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|24379878|ref|NP_721833.1| putative endonuclease [Strepto... 278 8e-73
gi|148985147|ref|ZP_01818386.1| endonuclease, putative [Str... 263 3e-68
gi|15901112|ref|NP_345716.1| endonuclease, putative [Strept... 262 5e-68
gi|149012303|ref|ZP_01833372.1| endonuclease, putative [Str... 261 9e-68
gi|149007086|ref|ZP_01830755.1| endonuclease, putative [Str... 260 2e-67
gi|149002619|ref|ZP_01827551.1| endonuclease, putative [Str... 259 2e-67
gi|148989274|ref|ZP_01820654.1| endonuclease, putative [Str... 259 2e-67
gi|148998683|ref|ZP_01826122.1| endonuclease, putative [Str... 257 1e-66
gi|148993860|ref|ZP_01823262.1| endonuclease, putative [Str... 257 1e-66
gi|15903173|ref|NP_358723.1| hypothetical protein spr1130 [... 257 2e-66
gi|116515594|ref|YP_816579.1| endonuclease, putative [Strep... 257 2e-66
gi|149019243|ref|ZP_01834605.1| endonuclease, putative [Str... 188 1e-45
gi|57237146|ref|YP_178158.1| McrBC restriction endonuclease... 166 6e-39
gi|121612502|ref|YP_999863.1| McrBC restriction endonucleas... 149 5e-34
gi|153951772|ref|YP_001397398.1| putative McrBC restriction... 145 9e-33
gi|21232164|ref|NP_638081.1| McrB-related protein [Xanthomo... 137 2e-30
gi|15791527|ref|NP_281350.1| putative endonuclease [Campylo... 137 2e-30
gi|34540720|ref|NP_905199.1| McrBC restriction endonuclease... 136 4e-30
gi|86153849|ref|ZP_01072052.1| McrBC restriction endonuclea... 134 1e-29
gi|32266942|ref|NP_860974.1| putative endonuclease [Helicob... 134 2e-29
gi|57640944|ref|YP_183422.1| putative 5-methylcytosine rest... 133 3e-29
gi|146294002|ref|YP_001184426.1| ATPase associated with var... 132 7e-29
gi|124004104|ref|ZP_01688951.1| 5-methylcytosine-specific r... 131 1e-28
gi|85711475|ref|ZP_01042533.1| hypothetical protein OS145_0... 130 3e-28
gi|45358318|ref|NP_987875.1| ATP/GTP-binding site motif A (... 126 3e-27
gi|78060551|ref|YP_367126.1| GTPase subunit of restriction ... 125 5e-27
gi|148926310|ref|ZP_01809994.1| putative endonuclease [Camp... 125 9e-27
gi|90410149|ref|ZP_01218166.1| GTPase subunit of restrictio... 123 3e-26
gi|57240286|ref|ZP_00368235.1| endonuclease, probable [Camp... 121 1e-25
gi|88597447|ref|ZP_01100682.1| McrBC restriction endonuclea... 118 9e-25
gi|75212130|ref|ZP_00712170.1| COG1401: GTPase subunit of r... 115 8e-24
gi|66046953|ref|YP_236794.1| ATPas [Pseudomonas syringae pv... 113 3e-23
gi|77974092|ref|ZP_00829635.1| COG1401: GTPase subunit of r... 112 6e-23
gi|22127668|ref|NP_671091.1| hypothetical protein y3797 [Ye... 111 1e-22
gi|16120721|ref|NP_404034.1| hypothetical protein YPO0387 [... 111 2e-22
gi|1854380|dbj|BAA19243.1| NcrB [Escherichia coli] 111 2e-22
gi|145600497|ref|YP_001164573.1| hypothetical protein YPDSF... 111 2e-22
gi|153807704|ref|ZP_01960372.1| hypothetical protein BACCAC... 110 2e-22
gi|86130664|ref|ZP_01049264.1| putative endonuclease [Cellu... 110 4e-22
gi|146796|gb|AAA24145.1| mcrB >gi|537188|gb|AAA97243.1| CG ... 109 5e-22
gi|89111055|ref|AP_004835.1| 5-methylcytosine-specific rest... 109 5e-22
gi|154507700|ref|ZP_02043342.1| hypothetical protein ACTODO... 109 7e-22
gi|146790|gb|AAA24142.1| mcrB protein 108 7e-22
gi|86149519|ref|ZP_01067749.1| 5-methylcytosine-specific re... 108 9e-22
gi|146791|gb|AAA24143.1| 33kD protein (put.); putative 108 1e-21
gi|116669427|ref|YP_830360.1| ATPase associated with variou... 107 3e-21
gi|125621518|gb|EAZ49851.1| sensor histidine kinase [Vibrio... 107 3e-21
gi|116220782|ref|ZP_01486205.1| hypothetical protein VchoV5... 106 3e-21
gi|86741527|ref|YP_481927.1| AAA_5 ATPase associated with v... 106 4e-21
gi|153000505|ref|YP_001366186.1| GTPase subunit of restrict... 105 6e-21
gi|119962222|ref|YP_946857.1| hypothetical protein AAur_106... 105 6e-21
gi|150401934|ref|YP_001329228.1| hypothetical protein MmarC... 103 4e-20
gi|149173165|ref|ZP_01851796.1| ATPase associated with vari... 100 3e-19
gi|81096279|ref|ZP_00874626.1| ATPas [Streptococcus suis 89... 98 1e-18
gi|83645100|ref|YP_433535.1| GTPase subunit of restriction ... 98 2e-18
gi|146318514|ref|YP_001198226.1| GTPase subunit of restrict... 97 2e-18
gi|57640730|ref|YP_183208.1| putative 5-methylcytosine rest... 97 2e-18
gi|28868859|ref|NP_791478.1| hypothetical protein PSPTO_165... 97 3e-18
gi|124519812|ref|ZP_01695282.1| ATPase associated with vari... 97 3e-18
gi|94970780|ref|YP_592828.1| ATPase associated with various... 97 4e-18
gi|146320708|ref|YP_001200419.1| GTPase subunit of restrict... 96 6e-18
gi|145223785|ref|YP_001134463.1| ATPase associated with var... 96 7e-18
gi|149019244|ref|ZP_01834606.1| endonuclease, putative [Str... 95 1e-17
gi|119714076|ref|YP_919218.1| ATPase associated with variou... 95 2e-17
gi|110799098|ref|YP_695439.1| McrB domain protein [Clostrid... 95 2e-17
gi|108797806|ref|YP_638003.1| ATPase associated with variou... 95 2e-17
gi|48477100|ref|YP_022806.1| 5-methylcytosine-specific rest... 94 3e-17
gi|153012112|ref|YP_001373323.1| GTPase subunit of restrict... 93 4e-17
gi|104782352|ref|YP_608850.1| hypothetical protein PSEEN330... 93 4e-17
gi|118031290|ref|ZP_01502745.1| ATPase associated with vari... 93 5e-17
gi|109671972|ref|ZP_01374215.1| putative endonuclease [Camp... 92 1e-16
gi|148549822|ref|YP_001269924.1| ATPase associated with var... 92 1e-16
gi|113866039|ref|YP_724528.1| 5-Methylcytosine-specific res... 92 1e-16
gi|23126777|ref|ZP_00108663.1| COG1401: GTPase subunit of r... 91 2e-16
gi|126656651|ref|ZP_01727865.1| putative restriction enzyme... 91 2e-16
gi|156449126|ref|ZP_02055509.1| ATPase associated with vari... 91 2e-16
gi|56479205|ref|YP_160794.1| AAA ATPase superfamily protein... 91 3e-16
gi|115378762|ref|ZP_01465907.1| ATPase family associated wi... 91 3e-16
gi|118444185|ref|YP_877506.1| endonuclease, putative [Clost... 90 4e-16
gi|49482329|ref|YP_039553.1| putative restriction enzyme [S... 89 7e-16
gi|55379062|ref|YP_136912.1| hypothetical protein rrnAC2392... 89 9e-16
gi|145294212|ref|YP_001137033.1| hypothetical protein cgR_0... 88 1e-15
gi|92109628|ref|YP_571915.1| ATPase associated with various... 87 3e-15
gi|119490044|ref|ZP_01622668.1| component of 5-methylcytosi... 87 3e-15
gi|126438633|ref|YP_001060513.1| AAA_5 ATPase [Burkholderia... 87 3e-15
gi|145954110|ref|ZP_01803117.1| hypothetical protein CdifQ_... 87 4e-15
gi|134297904|ref|YP_001111400.1| ATPase associated with var... 87 4e-15
gi|86748715|ref|YP_485211.1| AAA_5 ATPase [Rhodopseudomonas... 86 5e-15
gi|30250447|ref|NP_842517.1| AAA ATPase superfamily [Nitros... 86 5e-15
gi|67922732|ref|ZP_00516235.1| ATPaseATPas [Crocosphaera wa... 86 6e-15
gi|119486444|ref|ZP_01620502.1| putative restriction enzyme... 86 6e-15
gi|126699711|ref|YP_001088608.1| putative restriction enzym... 86 7e-15
gi|149369914|ref|ZP_01889765.1| 5-Methylcytosine-specific r... 86 8e-15
gi|84390144|ref|ZP_00991406.1| GTPase subunit of restrictio... 84 2e-14
gi|77458885|ref|YP_348391.1| GTPase subunit of restriction ... 81 2e-13
gi|73670717|ref|YP_306732.1| hypothetical protein Mbar_A327... 81 2e-13
gi|20090962|ref|NP_617037.1| hypothetical protein MA2119 [M... 81 2e-13
gi|75198123|ref|ZP_00708193.1| COG1401: GTPase subunit of r... 81 2e-13
gi|10957435|ref|NP_051672.1| McrB-related protein [Deinococ... 80 3e-13
gi|89891074|ref|ZP_01202582.1| putative GTPase subunit of r... 80 5e-13
gi|113477076|ref|YP_723137.1| ATPase associated with variou... 78 1e-12
gi|75187706|ref|ZP_00700973.1| COG1401: GTPase subunit of r... 78 2e-12
gi|88602580|ref|YP_502758.1| ATPase associated with various... 77 3e-12
gi|93005767|ref|YP_580204.1| ATPase associated with various... 75 1e-11
gi|91216791|ref|ZP_01253755.1| GTPase subunit of restrictio... 74 2e-11
gi|93005083|ref|YP_579520.1| ATPase associated with various... 72 1e-10
gi|148653828|ref|YP_001280921.1| GTPase subunit of restrict... 67 3e-09
gi|71064806|ref|YP_263533.1| probable endonuclease [Psychro... 66 8e-09
gi|148653161|ref|YP_001280254.1| ATPase associated with var... 65 1e-08
gi|1149676|emb|CAA60208.1| mcrB [Clostridium perfringens] 62 8e-08
gi|87125171|ref|ZP_01081018.1| AAA ATPase superfamily prote... 62 9e-08
gi|94311600|ref|YP_584810.1| ATPase associated with various... 62 9e-08
gi|77977894|ref|ZP_00833332.1| COG1401: GTPase subunit of r... 62 9e-08
gi|111020925|ref|YP_703897.1| probable 5-methylcytosine-spe... 62 1e-07
gi|91976450|ref|YP_569109.1| ATPase associated with various... 61 2e-07
gi|116217130|ref|ZP_01482944.1| hypothetical protein VchoR_... 57 3e-06
gi|15611234|ref|NP_222885.1| putative restriction enzyme [H... 57 4e-06
gi|150421004|gb|EDN13289.1| GTPase subunit of restriction e... 57 4e-06
gi|109672659|ref|ZP_01374895.1| restriction endonuclease [C... 56 6e-06
gi|30019094|ref|NP_830725.1| Type II restriction-modificati... 56 7e-06
>gi|24379878|ref|NP_721833.1| putative endonuclease [Streptococcus mutans UA159]
gi|24377853|gb|AAN59139.1|AE014980_6 putative endonuclease [Streptococcus mutans UA159]
Length = 567
Score = 278 bits (710), Expect = 8e-73, Method: Composition-based stats.
Identities = 219/590 (37%), Positives = 317/590 (53%), Gaps = 71/590 (12%)
Query: 10 RYWCVGHIFNKTEEQQPRFIEEGIWE-AWFIDTADAQRQ--LKLAKEIKKGDIVILRAL- 65
+Y+ VG F + + + + EEG WE W+ D +AQ Q LK+ +IK GDI++ +
Sbjct: 7 KYYFVGTKFGEYDNLE-HYKEEGKWELGWYNDEENAQYQKMLKVFNKIKSGDILLAKTSY 65
Query: 66 ---------KGNNENPSIPFICVSASGEVISDEKSINIVGKYTKVSYKVNYFWQGEE--- 113
K N+ S+ I A + + D+K IV S + YF+ G+E
Sbjct: 66 TKKNNLPFEKKNDMTVSVMKIRGMAIVKEVLDDKHTVIVDWKENYSEREWYFFTGQETIW 125
Query: 114 ---NFNDPEYKHYQGI-------INECKNIEIVN--YINSVRN--AEPTRKYAKYIELLE 159
N + E + Q I I E +N Y N + E K Y ++L+
Sbjct: 126 VPSNIKNREKETSQLIDFATSEKIKEQNYDYFLNHPYWNKYKKIETEENLKLQNYKDILK 185
Query: 160 QNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDSD- 217
+KNL+L GAPGTGKT++A+ IA+E+ ++D++ FVQFHPSYDYTDFVEGLRP D
Sbjct: 186 TSKNLILRGAPGTGKTYLAKQIAEELTDGNEDQIGFVQFHPSYDYTDFVEGLRPSSGDDG 245
Query: 218 NFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAID---EGTKFK 274
GF+L++G+F++FC KA K + + E + F E D +G+
Sbjct: 246 QIGFKLQDGIFREFCKKA--------KKATESGGQDNFDEAWDKFFEAVNDVDPDGSYDI 297
Query: 275 TSGTKNSFSIVE--NNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSGKDIQAHF 332
+ T ++ NE + +E + + + +KA+ ++ + V G
Sbjct: 298 KTLTGKPMHLIAYMRNEMSGVME----KGSASLFYNKAQCYNIYKGDSGVPKGG---LDN 350
Query: 333 HRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFF 392
+RK + + L N +K K +VFIIDEINRG+ISKIFGELFF
Sbjct: 351 YRKAVVKHLKEKYGLVNYVKP---------TETTTDKKFVFIIDEINRGEISKIFGELFF 401
Query: 393 AIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRR 452
+IDP YRGE+G V+TQY N+ E + F ++PENVYIIGTMNDIDRSV+ DFAMRRR
Sbjct: 402 SIDPDYRGEKGAVSTQYANLHETDEKF----YIPENVYIIGTMNDIDRSVDTFDFAMRRR 457
Query: 453 FSWVEVTPNDTESML---DELSC--VEEAKETMERLNKAIEETEGLGSAYMIGPAYFRKL 507
F +VE+ DT M DE +EEA+ + LNKAI TEGL S Y IGP+YF KL
Sbjct: 458 FRFVEIKAADTMGMWENNDEFDNDKIEEARIRLTNLNKAISNTEGLNSHYHIGPSYFLKL 517
Query: 508 GENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAYVGEKEEEHSN 557
+ D+D LW +EPLL++YLRG + +++L++AY E+E + ++
Sbjct: 518 KDLDYDYDILWSDYLEPLLKDYLRGSYDETDSLDKLKDAYNNEEETDETH 567
>gi|148985147|ref|ZP_01818386.1| endonuclease, putative [Streptococcus pneumoniae SP3-BS71]
gi|147922592|gb|EDK73710.1| endonuclease, putative [Streptococcus pneumoniae SP3-BS71]
Length = 668
Score = 263 bits (671), Expect = 3e-68, Method: Composition-based stats.
Identities = 180/411 (43%), Positives = 243/411 (59%), Gaps = 57/411 (13%)
Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLR 211
+Y +L Q+KNL+L GAPGTGKT++A+ IAKE+ ++D++ FVQFHPSYDYTDFVEGLR
Sbjct: 273 EYKNILLQSKNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLR 332
Query: 212 PVRDSDN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEG 270
PV + D F L++G+FKDFC KA + Q G +D +EA D
Sbjct: 333 PVSNGDGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSY 376
Query: 271 TKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG----- 325
++ I V A EK + K S + + +++ SG
Sbjct: 377 LEY------------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWS 415
Query: 326 ---KDIQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEI 378
K + + K+ +Q+ Y + ++K+ K V +++DT K +VFIIDEI
Sbjct: 416 LPSKYVYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYVSPTEIDTDKKFVFIIDEI 475
Query: 379 NRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDI 438
NRG+ISKIFGELFF+IDPGYRGE+G V+TQY N+ E + F++PENVYIIGTMNDI
Sbjct: 476 NRGEISKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDI 531
Query: 439 DRSVENMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSA 496
DRSV+ DFAMRRRF +VEVT MLD EL+ EEAK + LN AIE + L S
Sbjct: 532 DRSVDTFDFAMRRRFRFVEVTAEGQVGMLDKELNIHAEEAKIRLRNLNAAIENVQELNSH 591
Query: 497 YMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
Y IGP+YF KL + D++ LW I+PLL +YLRG E + L++A+
Sbjct: 592 YHIGPSYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 642
>gi|15901112|ref|NP_345716.1| endonuclease, putative [Streptococcus pneumoniae TIGR4]
gi|111658426|ref|ZP_01409105.1| hypothetical protein SpneT_02000397 [Streptococcus pneumoniae
TIGR4]
gi|14972734|gb|AAK75356.1| putative endonuclease [Streptococcus pneumoniae TIGR4]
Length = 643
Score = 262 bits (669), Expect = 5e-68, Method: Composition-based stats.
Identities = 178/406 (43%), Positives = 240/406 (59%), Gaps = 57/406 (14%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
L ++ NL+L GAPGTGKT++A+ IAKE+ ++D++ FVQFHPSYDYTDFVEGLRPV +
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312
Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
D F L++G+FKDFC KA + Q G +D +EA D ++
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354
Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
I V A EK + K S + + +++ SG K
Sbjct: 355 ----------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKY 395
Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
+ + K+ +Q+ Y + ++K+ K V +++DT KN+VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYVSPTEIDTDKNFVFIIDEINRGEI 455
Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
SKIFGELFF+IDPGYRGE+G V+TQY N+ E + F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511
Query: 444 NMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGP 501
DFAMRRRF +VEVT MLD EL+ EEAK + LN AIE + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTVEGQAGMLDKELNIHAEEAKIRLRNLNAAIENIQELNSHYHIGP 571
Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
+YF KL + D++ LW I+PLL +YLRG E + L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|149012303|ref|ZP_01833372.1| endonuclease, putative [Streptococcus pneumoniae SP19-BS75]
gi|147763629|gb|EDK70564.1| endonuclease, putative [Streptococcus pneumoniae SP19-BS75]
Length = 643
Score = 261 bits (667), Expect = 9e-68, Method: Composition-based stats.
Identities = 176/395 (44%), Positives = 241/395 (61%), Gaps = 35/395 (8%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
L ++ NL+L GAPGTGKT++A+ IAKE+ ++D++ FVQFHPSYDYTDFVEGLRP +
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPDSNE 312
Query: 217 D-NFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
D + F+L+ G+FK FC QN DS+K I R++ +++ IDE
Sbjct: 313 DGSIFFKLKEGIFKKFC----QNAIDSKK-IGGQDNFDEARDLYLEYVNN-IDEKEYL-- 364
Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSGKDIQAHFHRK 335
FS + N R + K + L+K+ + +L + +K Q ++H +
Sbjct: 365 ----TEFSYLTVNSRN-NFNINYETKAKGTVLTKSYVYELYKDENYLK-----QPYYHNQ 414
Query: 336 HRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDISKIFGELFFAI 394
+ + +KK+ K + +V+T KN+VFIIDEINRG+ISKIFGELFF+I
Sbjct: 415 GKK--------VLETLKKRFGLKDYISPEEVETDKNFVFIIDEINRGEISKIFGELFFSI 466
Query: 395 DPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFS 454
DPGYRGE+G V+TQY N+ E + F++PENVYIIGTMNDIDRSV+ DFAMRRRF
Sbjct: 467 DPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVDTFDFAMRRRFR 522
Query: 455 WVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGD 512
+VEVT MLD EL+ EEAK + LN AIE + L S Y IGP+YF KL +
Sbjct: 523 FVEVTVEGQAGMLDKELNIHAEEAKIRLRNLNAAIENIQELNSHYHIGPSYFLKLKDVDF 582
Query: 513 DFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
D++ LW I+PLL +YLRG E + L++A+
Sbjct: 583 DYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|149007086|ref|ZP_01830755.1| endonuclease, putative [Streptococcus pneumoniae SP18-BS74]
gi|147761390|gb|EDK68356.1| endonuclease, putative [Streptococcus pneumoniae SP18-BS74]
Length = 643
Score = 260 bits (664), Expect = 2e-67, Method: Composition-based stats.
Identities = 177/406 (43%), Positives = 239/406 (58%), Gaps = 57/406 (14%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
L ++ NL+L GAPGTGKT++A+ IAKE+ ++D++ FVQFHPSYDYTDFVEGLRPV +
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312
Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
D F L++G+FKDFC KA + Q G +D +EA D ++
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354
Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
I V A EK + K S + + +++ SG K
Sbjct: 355 ----------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKY 395
Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
+ + K+ +Q+ Y + ++K+ K V +++DT K +VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYVSPTEIDTDKKFVFIIDEINRGEI 455
Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
SKIFGELFF+IDPGYRGE+G V+TQY N+ E + F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511
Query: 444 NMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGP 501
DFAMRRRF +VEVT MLD EL+ EEAK + LN AIE + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTAEGQVGMLDKELNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 571
Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
+YF KL + D++ LW I+PLL +YLRG E + L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|149002619|ref|ZP_01827551.1| endonuclease, putative [Streptococcus pneumoniae SP14-BS69]
gi|147759230|gb|EDK66223.1| endonuclease, putative [Streptococcus pneumoniae SP14-BS69]
Length = 643
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 177/406 (43%), Positives = 239/406 (58%), Gaps = 57/406 (14%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
L ++ NL+L GAPGTGKT++A+ IAKE+ ++D++ FVQFHPSYDYTDFVEGLRPV +
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312
Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
D F L++G+FKDFC KA + Q G +D +EA D ++
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354
Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
I V A EK + K S + + +++ SG K
Sbjct: 355 ----------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKY 395
Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
+ + K+ +Q+ Y + ++K+ K V +++DT K +VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYVSPTEIDTDKKFVFIIDEINRGEI 455
Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
SKIFGELFF+IDPGYRGE+G V+TQY N+ E + F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511
Query: 444 NMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGP 501
DFAMRRRF +VEVT MLD EL+ EEAK + LN AIE + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTAEGQVGMLDKELNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 571
Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
+YF KL + D++ LW I+PLL +YLRG E + L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|148989274|ref|ZP_01820654.1| endonuclease, putative [Streptococcus pneumoniae SP6-BS73]
gi|147925252|gb|EDK76331.1| endonuclease, putative [Streptococcus pneumoniae SP6-BS73]
Length = 643
Score = 259 bits (663), Expect = 2e-67, Method: Composition-based stats.
Identities = 177/406 (43%), Positives = 239/406 (58%), Gaps = 57/406 (14%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
L ++ NL+L GAPGTGKT++A+ IAKE+ ++D++ FVQFHPSYDYTDFVEGLRPV +
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312
Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
D F L++G+FKDFC KA + Q G +D +EA D ++
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354
Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
I V A EK + K S + + +++ SG K
Sbjct: 355 ----------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKY 395
Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
+ + K+ +Q+ Y + ++K+ K V +++DT K +VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYVSPTEIDTDKKFVFIIDEINRGEI 455
Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
SKIFGELFF+IDPGYRGE+G V+TQY N+ E + F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511
Query: 444 NMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGP 501
DFAMRRRF +VEVT MLD EL+ EEAK + LN AIE + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTAEGQVGMLDKELNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 571
Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
+YF KL + D++ LW I+PLL +YLRG E + L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|148998683|ref|ZP_01826122.1| endonuclease, putative [Streptococcus pneumoniae SP11-BS70]
gi|147755520|gb|EDK62568.1| endonuclease, putative [Streptococcus pneumoniae SP11-BS70]
Length = 643
Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats.
Identities = 176/406 (43%), Positives = 238/406 (58%), Gaps = 57/406 (14%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
L ++ NL+L GAPGTGKT++A+ IAKE+ ++D++ FVQFHPSYDYTDFVEGLRPV +
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312
Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
D F L++G+FKDFC KA + Q G +D +EA D ++
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354
Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
I V A EK + K S + + +++ SG K
Sbjct: 355 ----------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKY 395
Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
+ + K+ +Q+ Y + ++K+ K + +V+T K +VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYISPEEVETDKKFVFIIDEINRGEI 455
Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
SKIFGELFF+IDPGYRGE+G V+TQY N+ E + F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511
Query: 444 NMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGP 501
DFAMRRRF +VEVT MLD EL+ EEAK + LN AIE + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTAEGQVGMLDKELNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 571
Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
+YF KL + D++ LW I+PLL +YLRG E + L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|148993860|ref|ZP_01823262.1| endonuclease, putative [Streptococcus pneumoniae SP9-BS68]
gi|147927685|gb|EDK78710.1| endonuclease, putative [Streptococcus pneumoniae SP9-BS68]
Length = 643
Score = 257 bits (657), Expect = 1e-66, Method: Composition-based stats.
Identities = 176/406 (43%), Positives = 238/406 (58%), Gaps = 57/406 (14%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
L ++ NL+L GAPGTGKT++A+ IAKE+ ++D++ FVQFHPSYDYTDFVEGLRPV +
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312
Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
D F L++G+FKDFC KA + Q G +D +EA D ++
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354
Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
I V A EK + K S + + +++ SG K
Sbjct: 355 ----------------INV---AEEKEYITKTSYLSVNSRQNLSVNYDSGVPGWSLPSKY 395
Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
+ + K+ +Q+ Y + ++K+ K V +++DT K +VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYVSPTEIDTDKKFVFIIDEINRGEI 455
Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
SKIFGELFF+I PGYRGE+G V+TQY N+ E + F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIGPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511
Query: 444 NMDFAMRRRFSWVEVTPNDTESMLD-ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGP 501
DFAMRRRF +VEVT MLD EL+ EEAK + LN AIE + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTAEGQVGMLDKELNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 571
Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
+YF KL + D++ LW I+PLL +YLRG E + L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|15903173|ref|NP_358723.1| hypothetical protein spr1130 [Streptococcus pneumoniae R6]
gi|15458758|gb|AAK99933.1| Hypothetical protein [Streptococcus pneumoniae R6]
Length = 644
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 174/406 (42%), Positives = 237/406 (58%), Gaps = 57/406 (14%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
L ++ NL+L GAPGTGKT++A+ IAKE+ ++D++ FVQFHPSYDYTDFVEGLRPV +
Sbjct: 254 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 313
Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
D F L++G+FKDFC KA + Q G +D +EA D ++
Sbjct: 314 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 355
Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
I V A EK + K S + + +++ SG K
Sbjct: 356 ----------------INV---AEEKEYITKTSDLSVNSRQNLSVNYDSGVPGWSLPSKY 396
Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
+ + K+ +Q+ Y + ++K+ K + +V+T K +VFIIDEINRG+I
Sbjct: 397 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYISPEEVETDKKFVFIIDEINRGEI 456
Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
SKIFGELFF+IDPGYRGE+G V+TQY N+ E + F++PENVYIIGTMNDIDRSV+
Sbjct: 457 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 512
Query: 444 NMDFAMRRRFSWVEVTPNDTESMLDELSCV--EEAKETMERLNKAIEETEGLGSAYMIGP 501
DFAMRRRF +VEVT MLD+ + EEAK + LN AIE + L S Y IGP
Sbjct: 513 TFDFAMRRRFRFVEVTAEGQVGMLDKDLNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 572
Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
+YF KL + D++ LW I+PLL +YLRG E + L++A+
Sbjct: 573 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 618
>gi|116515594|ref|YP_816579.1| endonuclease, putative [Streptococcus pneumoniae D39]
gi|116076170|gb|ABJ53890.1| endonuclease, putative [Streptococcus pneumoniae D39]
Length = 643
Score = 257 bits (656), Expect = 2e-66, Method: Composition-based stats.
Identities = 174/406 (42%), Positives = 237/406 (58%), Gaps = 57/406 (14%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
L ++ NL+L GAPGTGKT++A+ IAKE+ ++D++ FVQFHPSYDYTDFVEGLRPV +
Sbjct: 253 LLKSPNLILRGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312
Query: 217 DN-FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFKT 275
D F L++G+FKDFC KA + Q G +D +EA D ++
Sbjct: 313 DGAIEFRLQDGIFKDFCQKA-----------KETQLIGG-----QDNFDEAWDSYLEY-- 354
Query: 276 SGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSG--------KD 327
I V A EK + K S + + +++ SG K
Sbjct: 355 ----------------INV---AEEKEYITKTSDLSVNSRQNLSVNYDSGVPGWSLPSKY 395
Query: 328 IQAHFHRKHRTQQDSYIF---VLYNIIKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDI 383
+ + K+ +Q+ Y + ++K+ K + +V+T K +VFIIDEINRG+I
Sbjct: 396 VYELYKDKNYNKQEYYKSGGKTVLETLRKRFGLKDYISPEEVETDKKFVFIIDEINRGEI 455
Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
SKIFGELFF+IDPGYRGE+G V+TQY N+ E + F++PENVYIIGTMNDIDRSV+
Sbjct: 456 SKIFGELFFSIDPGYRGEKGSVSTQYANLHETDEK----FYIPENVYIIGTMNDIDRSVD 511
Query: 444 NMDFAMRRRFSWVEVTPNDTESMLDELSCV--EEAKETMERLNKAIEETEGLGSAYMIGP 501
DFAMRRRF +VEVT MLD+ + EEAK + LN AIE + L S Y IGP
Sbjct: 512 TFDFAMRRRFRFVEVTAEGQVGMLDKDLNIHAEEAKIRLRNLNAAIENVQELNSHYHIGP 571
Query: 502 AYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
+YF KL + D++ LW I+PLL +YLRG E + L++A+
Sbjct: 572 SYFLKLKDVDFDYELLWSDYIKPLLEDYLRGSYDEVETLETLKKAF 617
>gi|149019243|ref|ZP_01834605.1| endonuclease, putative [Streptococcus pneumoniae SP23-BS72]
gi|147931113|gb|EDK82092.1| endonuclease, putative [Streptococcus pneumoniae SP23-BS72]
Length = 307
Score = 188 bits (477), Expect = 1e-45, Method: Composition-based stats.
Identities = 109/200 (54%), Positives = 139/200 (69%), Gaps = 7/200 (3%)
Query: 351 IKKQAAKKPSVEVSKVDT-KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQY 409
++K+ K V +++DT K +VFIIDEINRG+ISKIFGELFF+IDPGYRGE+G V+TQY
Sbjct: 86 LRKRFGLKDYVSPTEIDTDKKFVFIIDEINRGEISKIFGELFFSIDPGYRGEKGSVSTQY 145
Query: 410 QNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLD- 468
N+ E + F++PENVYIIGTMNDIDRSV+ DFAMRRRF +VEVT MLD
Sbjct: 146 ANLHETDEK----FYIPENVYIIGTMNDIDRSVDTFDFAMRRRFRFVEVTAEGQVGMLDK 201
Query: 469 ELSC-VEEAKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLR 527
EL+ EEAK + LN AIE + L S Y IGP+YF KL + D++ LW I+PLL
Sbjct: 202 ELNIHAEEAKIRLRNLNTAIENVQELNSHYHIGPSYFLKLKDVDFDYELLWSDYIKPLLE 261
Query: 528 EYLRGFRKTNEIMNQLREAY 547
+YLRG E + L++A+
Sbjct: 262 DYLRGSYDEVETLETLKKAF 281
>gi|57237146|ref|YP_178158.1| McrBC restriction endonuclease system, McrB subunit, putative
[Campylobacter jejuni RM1221]
gi|57165950|gb|AAW34729.1| McrBC restriction endonuclease system, McrB subunit, putative
[Campylobacter jejuni RM1221]
Length = 662
Score = 166 bits (419), Expect = 6e-39, Method: Composition-based stats.
Identities = 141/422 (33%), Positives = 215/422 (50%), Gaps = 49/422 (11%)
Query: 163 NLVLTGAPGTGKTFMAQAIAKEM-----------------GCSDDEMAFVQFHPSYDYTD 205
N +L G PGTGKT+ A E+ + ++ F FH SY Y +
Sbjct: 211 NQILYGPPGTGKTYHTIDKALEILGENLENRDEKKAKFDEYVKNGQIVFTTFHQSYGYEE 270
Query: 206 FVEGLRPVRDSDN----FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILED 261
FVEG++P DS +E+++G+FK+ C KAL N+K S E K + +E
Sbjct: 271 FVEGIKPRIDSKENSKEVEYEIKDGIFKELCKKALDNYKVSLLTQEEFVKSEDLENKIEI 330
Query: 262 FIEEAIDEGTKFKTSGTKNSFSIVENNE--RTITVEVPANEKTRLVKLSKAELIDLMDNN 319
F++E +D+ KF F + E NE R IT + AN + L+ L++N
Sbjct: 331 FLDELVDQ-QKFIEKIQSGGFKLEEYNEKYRIITDDTNAN-----LYLNLEIFKTLLENK 384
Query: 320 ISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKK--QAAKKPSVEVSKVDTKNYVFIIDE 377
+ +G+ I+ + KHR Q DSY F L + K+ Q K + K + K Y+ IIDE
Sbjct: 385 DKIINGRSIKQILNNKHRRQIDSYYFQLVKLFKEREQDYKVDNNPSEKPELKPYIIIIDE 444
Query: 378 INRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGT 434
INRG++SKIFGEL I+P R E KV Y + F VP+NVYIIGT
Sbjct: 445 INRGNVSKIFGELITLIEPSKRIGEKEELKVTLPYSG---------EKFGVPKNVYIIGT 495
Query: 435 MNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEGLG 494
MN DRS+ ++D A+RRRF ++E+ P+ ++ +D +E ++ +N IE L
Sbjct: 496 MNTADRSITSLDTALRRRFEFIEMMPDVSKLSMDCEGI--NLQELLKAINTRIEYL--LD 551
Query: 495 SAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL-RGFRKTNEIMNQLREAYVGEKEE 553
IG A+F + EN +D K+++ I PLL+EY + NE++N + +K++
Sbjct: 552 REKTIGHAFFVSV-ENLEDLKKVFQNKIIPLLQEYFYNDYALINEVLNDNGMIFEDKKDD 610
Query: 554 EH 555
++
Sbjct: 611 KY 612
>gi|121612502|ref|YP_999863.1| McrBC restriction endonuclease system, McrB subunit, putative
[Campylobacter jejuni subsp. jejuni 81-176]
gi|121504171|gb|EAQ73019.2| McrBC restriction endonuclease system, McrB subunit, putative
[Campylobacter jejuni subsp. jejuni 81-176]
Length = 603
Score = 149 bits (376), Expect = 5e-34, Method: Composition-based stats.
Identities = 130/410 (31%), Positives = 213/410 (51%), Gaps = 58/410 (14%)
Query: 160 QNKNL----VLTGAPGTGKTFMA-----QAIAKEMGCSDDEMA------------FVQFH 198
+NKN+ +L G+PGTGKT+ + + K + DD+ A F FH
Sbjct: 154 ENKNMPLNQILYGSPGTGKTYHTIDKALEILGKNLESRDDKKAKFDEYVKKGQIVFTTFH 213
Query: 199 PSYDYTDFVEGLRPVRDSDN----FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGS 254
SY Y +FVEG++P DS +++++G+FK+ C KAL N+++S + L K+
Sbjct: 214 QSYGYEEFVEGIKPRIDSKENSKEIEYKIKDGIFKELCEKALDNYENSILNADELNKKIE 273
Query: 255 VREILEDFIEEAIDEGTKF-KTSGTKNSFSIVENNERTITVEVPANEK-TRLVKLSKAEL 312
++E +E+F+ ++ KT G +F +VE + +TI + E+ + L+ +
Sbjct: 274 LKEKVENFLNWLLETNEPIGKTKG--GNFFVVEIDNKTIVIYSEGVERFDGIFNLNLSIF 331
Query: 313 IDLMDNNISVKSGKDI-QAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDT--- 368
++L+ + ++ + F+R + + +Y F N++KK A + +K++
Sbjct: 332 MELLKCKDEFNNATEMFKKVFNRDYADRTHTYYF---NLVKKFKAYEEKQLAAKIENNKN 388
Query: 369 -----KNYVFIIDEINRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFK 420
K Y+ IIDEINRG++SKIFGEL I+P R E KV Y
Sbjct: 389 NDNSLKPYIIIIDEINRGNLSKIFGELITLIEPSKRIGEKEELKVTLPYSG--------- 439
Query: 421 DGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETM 480
+ F VP+NVYIIGTMN DRS+ ++D A+RRRF +VE+ P+ ++ +D +E +
Sbjct: 440 EKFGVPKNVYIIGTMNTADRSITSLDTALRRRFEFVEMMPDVSKLSIDCEGI--NLQELL 497
Query: 481 ERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
+ +N IE L IG A+F + EN + K++K I PLL+EY
Sbjct: 498 KAINTRIEYL--LDREKTIGHAFFISV-ENLESLKKVFKNRIIPLLQEYF 544
>gi|153951772|ref|YP_001397398.1| putative McrBC restriction endonuclease system, McrB subunit
[Campylobacter jejuni subsp. doylei 269.97]
gi|152939218|gb|ABS43959.1| putative McrBC restriction endonuclease system, McrB subunit
[Campylobacter jejuni subsp. doylei 269.97]
Length = 598
Score = 145 bits (365), Expect = 9e-33, Method: Composition-based stats.
Identities = 134/432 (31%), Positives = 224/432 (51%), Gaps = 62/432 (14%)
Query: 111 GEENFNDPEYKHYQGIINE-CKNIE-IVNYINSV-RNAEPTR-KYAKYIELLEQNKNLVL 166
G+ + D +YK ++ N+ K+ + ++NY N +N R +++ +I L N +L
Sbjct: 146 GKLRYFDFKYKDFEKETNQIVKDFQDMINYFNIFDKNDFKLRAEFSTFIPL-----NQIL 200
Query: 167 TGAPGTGKTFMA-----QAIAKE----MGCSDD---------------EMAFVQFHPSYD 202
G PGTGKT+ + I+KE + DD ++ F FH SY
Sbjct: 201 YGPPGTGKTYHTIDKALEIISKEEKIQIPSEDDRINRKKLFDEYVKNGQIVFTTFHQSYG 260
Query: 203 YTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDF 262
Y +FVEG++P +S +++ NGVFK+FC KAL N+++S + L K+ ++E E+F
Sbjct: 261 YEEFVEGIKPDINSKEVKYKIENGVFKEFCEKALDNYENSILNADELNKKIELKEKFENF 320
Query: 263 IEEAIDEGTKF-KTSGTKNSFSIVENNERTITVEVPANEK-TRLVKLSKAELIDLMDNNI 320
+ ++ KT G +F +V+ N++T+ + E+ LS + ++L+
Sbjct: 321 LNWLLETNEPIGKTKG--GNFFVVDINDKTVMIYSEGVERFDGNFNLSISIFMELLKCKD 378
Query: 321 SVKSGKDI-QAHFHRKHRTQQDSYIFVLYNIIKK-QAAKKPSVEVSKVDTKN------YV 372
+ ++ + F+R + + +Y F N++KK +A +K SV + + N YV
Sbjct: 379 EFNNAAEMFKKVFNRDYADRTHTYYF---NLVKKFKAYEKQSVAKIENNKNNDNSLKPYV 435
Query: 373 FIIDEINRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFKDGFFVPENV 429
IIDEINRG++SKIFGEL I+P R E KV Y K F VP+NV
Sbjct: 436 IIIDEINRGNVSKIFGELITLIEPSKRIGVEEELKVTLPYS---------KKEFGVPKNV 486
Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLD--ELSCVEEAKETMERLNKAI 487
YIIGTMN DRS+ ++D A+RRRF ++E+ P+ ++ +D ++ E K R+ +
Sbjct: 487 YIIGTMNTADRSITSLDTALRRRFEFIEMMPDVSKLSMDCEGINLQELLKAINTRIEYLL 546
Query: 488 EETEGLGSAYMI 499
+ + +G A+ I
Sbjct: 547 DREKTIGHAFFI 558
>gi|21232164|ref|NP_638081.1| McrB-related protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66767707|ref|YP_242469.1| McrB-related protein [Xanthomonas campestris pv. campestris str.
8004]
gi|21113917|gb|AAM42005.1| McrB-related protein [Xanthomonas campestris pv. campestris str.
ATCC 33913]
gi|66573039|gb|AAY48449.1| McrB-related protein [Xanthomonas campestris pv. campestris str.
8004]
Length = 842
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 136/477 (28%), Positives = 211/477 (44%), Gaps = 114/477 (23%)
Query: 163 NLVLTGAPGTGKTFMAQAIAKEMGCSD-----------------------DEMA------ 193
N +L G PGTGKT+ +AI K + D DE+A
Sbjct: 333 NQILFGPPGTGKTY--EAIEKALEILDPSFLLQLGDDESNERRRALKRRYDELAKEGLVQ 390
Query: 194 FVQFHPSYDYTDFVEGLRPVRDSD--NFGFELRNGVFKDFCAKALQNF--KDSEKPIE-- 247
FV FH S+ Y +FVEGL D D +E+ +GVFK+ C A + + P+E
Sbjct: 391 FVTFHQSFSYENFVEGLSASSDPDTKQVRYEVEDGVFKELCESARTRLVRRSDDAPLELS 450
Query: 248 --RLQKEGSVREILEDFI-EEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANE---- 300
R+ K I E I EE +++G G FS ++ E + + E
Sbjct: 451 GRRIWKLSLGDSITEGHIFEECMEKGLALMGFGNNADFSQCQSREDIQKMFAASGEPLSL 510
Query: 301 --------KTRLVKLSKAELIDLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIK 352
KT + ++ +LI + + N+ ++ +I + R DS + ++
Sbjct: 511 GAYPITAIKTFVCQMKLGDLIVVSEGNLKFRAIGEITGDYQLLPR---DSDTYSQARPVR 567
Query: 353 KQAAKKPSV-----------------------------EVSKVDT------KNYVFIIDE 377
KP++ E+ K + + +V IIDE
Sbjct: 568 WLRGYKPALPYGALMENRFSQMTVYELRAGSIDHDKFRELLKSECIATGADRPHVLIIDE 627
Query: 378 INRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KDGFFVPENVYIIGTMN 436
INRG++S+IFGEL I+P R + +E P+ KD F VP+NVY+IGTMN
Sbjct: 628 INRGNVSRIFGELITLIEPSKRSGAAEA-------LEVLLPYSKDPFSVPDNVYLIGTMN 680
Query: 437 DIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAK----ETMERLNKAIEETEG 492
DRS+ +D A+RRRF +VE+ P D+L+ V+ A+ +E +N+ IE
Sbjct: 681 TADRSLAGLDIALRRRFDFVEMAPRP-----DKLTGVKVAEIDISAVLETMNRRIEVL-- 733
Query: 493 LGSAYMIGPAYFRKLGENGDDFDKL---WKMNIEPLLREY-LRGFRKTNEIMNQLRE 545
L + +G AYF L EN +D +L ++ I PLL+EY +++ I+N R+
Sbjct: 734 LDREHRLGHAYFMSL-ENSNDLSRLSNIFRQQIIPLLQEYFFEDWQRIAWILNDHRK 789
>gi|15791527|ref|NP_281350.1| putative endonuclease [Campylobacter jejuni subsp. jejuni NCTC
11168]
gi|112359526|emb|CAL34310.1| putative endonuclease [Campylobacter jejuni subsp. jejuni NCTC
11168]
Length = 783
Score = 137 bits (345), Expect = 2e-30, Method: Composition-based stats.
Identities = 122/424 (28%), Positives = 216/424 (50%), Gaps = 47/424 (11%)
Query: 163 NLVLTGAPGTGKTFMA-----QAIAKEMGCSDDEMA------------FVQFHPSYDYTD 205
N +L G PGTGKT+ + + + + D++ A F FH SY Y +
Sbjct: 326 NQILYGPPGTGKTYHTIDKALEILGENLESRDEKKAKFDEYVRKGQIVFTTFHQSYGYEE 385
Query: 206 FVEGLRPVRDSDN----FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILED 261
FVEG++P+ D+D +++++G+FK+ C K+L+N+ S + + + + E
Sbjct: 386 FVEGIKPIIDNDENSQEVKYDVKDGIFKELCDKSLKNYILSMQNENEIDLDKLIFEFANY 445
Query: 262 FIEEAIDEGTKFKTSGTKNSFSIVENNE---RTITVEVPANEKTRL-VKLSKAELIDLMD 317
++ +++G +F + I+ N + R+ ++ L + + K + ++
Sbjct: 446 INQDFLNKGNEFPLENKVSIKKILLNFKDEYRSFSLGGSIKSPQSLTIDIIKRDYLNF-- 503
Query: 318 NNISVKSGKDIQAHFHRKHRTQQDS-YIFVLYNIIKK-QAAKKPSVEVSKVDTKNYVFII 375
N + S KDI+ + + ++ Y F+ YN +K+ + + ++ K K+Y+ II
Sbjct: 504 KNKKILSFKDIKPKYDSQSDYHGNAIYYFMFYNKLKEFENIQNEKFKIKKEILKSYIIII 563
Query: 376 DEINRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFKDGFFVPENVYII 432
DEINRG++SKIFGEL I+P R E KV Y + F VP+NVYII
Sbjct: 564 DEINRGNVSKIFGELITLIEPSKRIGEKEELKVTLPYSG---------EKFGVPKNVYII 614
Query: 433 GTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEG 492
GTMN DRS+ ++D A+RRRF +VE+ P+ ++ +D +E ++ +N IE
Sbjct: 615 GTMNTADRSITSLDTALRRRFEFVEMMPDVSKLSMDCEGI--NLQELLKAINTRIEYL-- 670
Query: 493 LGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL-RGFRKTNEIMNQLREAYVGEK 551
L IG A+F + EN +D K+++ I PLL+EY + N ++N + +K
Sbjct: 671 LDREKTIGHAFFVSV-ENLEDLKKVFQNKIIPLLQEYFYNDYALINAVLNDNDMIFEDKK 729
Query: 552 EEEH 555
++++
Sbjct: 730 DDKY 733
>gi|34540720|ref|NP_905199.1| McrBC restriction endonuclease system, McrB subunit, putative
[Porphyromonas gingivalis W83]
gi|34397034|gb|AAQ66098.1| McrBC restriction endonuclease system, McrB subunit, putative
[Porphyromonas gingivalis W83]
Length = 571
Score = 136 bits (343), Expect = 4e-30, Method: Composition-based stats.
Identities = 106/345 (30%), Positives = 165/345 (47%), Gaps = 61/345 (17%)
Query: 147 PTRKYAK---YIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDD------------- 190
P +Y++ Y +LLE KN++L GAPGTGKT+ +IA M C+ +
Sbjct: 142 PIEEYSQLKEYAQLLESKKNIILQGAPGTGKTYTTASIAVHM-CNKNFTDYTDHSKVIEE 200
Query: 191 --------EMAFVQFHPSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDS 242
++AF FH S DY DFVEGL+P S+N + + NG+FK C +A
Sbjct: 201 YERLRDTGQIAFCTFHQSMDYEDFVEGLKPEVKSNNVEYNVENGIFKSICEQA------- 253
Query: 243 EKPIERLQKEGSVREILEDFIE--EAIDEGTKFKTSGTKNSFSI--VENNERTITVEVPA 298
+ ++E + ++ +++ + + K T ++ + +E N+ T
Sbjct: 254 -----KTKEEADIITCIDKYLQSIKGYENKKKIPTISGRSDLWVWWIEGNDTIST----- 303
Query: 299 NEKTRLVKLSKAELIDLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKK 358
++ + K K E L NI + I R ++I A KK
Sbjct: 304 --RSAISKSEKGEQYSLSPLNIEKVKLQAIGEAIENNWRQYAQAFI---------NAVKK 352
Query: 359 PSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDP 418
++ K YV IIDEINRG++SKIFGEL ++ R G + ++I P
Sbjct: 353 EYQLDKQISDKPYVLIIDEINRGNVSKIFGELITLLEADKRSGAGSDSNHCISLIL---P 409
Query: 419 F-KDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPND 462
+ K+ F VP N+YIIGTMN DRS +D+A+RRRF++V + +D
Sbjct: 410 YSKENFSVPSNLYIIGTMNTTDRSTGTIDYAVRRRFAFVTLKSSD 454
>gi|86153849|ref|ZP_01072052.1| McrBC restriction endonuclease system, McrB subunit, putative
[Campylobacter jejuni subsp. jejuni HB93-13]
gi|85842810|gb|EAQ60022.1| McrBC restriction endonuclease system, McrB subunit, putative
[Campylobacter jejuni subsp. jejuni HB93-13]
Length = 773
Score = 134 bits (338), Expect = 1e-29, Method: Composition-based stats.
Identities = 122/407 (29%), Positives = 204/407 (50%), Gaps = 57/407 (14%)
Query: 163 NLVLTGAPGTGKTFMA-----QAIAKE----MGCSDD---------------EMAFVQFH 198
N +L G+PGTGKT+ + I+KE + DD ++ F FH
Sbjct: 326 NQILYGSPGTGKTYHTIDKALEIISKEEKIQIPSEDDRINRKKIFDEYVKNGQIVFTTFH 385
Query: 199 PSYDYTDFVEGLRPVRDSDN----FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGS 254
SY Y +FVEG++P+ D+D +++++G+FK+ C K+L+N+ S + + +
Sbjct: 386 QSYGYEEFVEGIKPIIDNDENSQEVKYDVKDGIFKELCDKSLKNYILSMQNENEIDLDKL 445
Query: 255 VREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELID 314
+ E ++ +++G +F + I+ N + E + +K ++ ID
Sbjct: 446 IFEFANYINQDFLNKGNEFPLENKVSIKKILLNFKD----EYRSFSLGGSIKSPQSLTID 501
Query: 315 LMD------NNISVKSGKDIQAHFHRKHRTQQDS-YIFVLYNIIKK-QAAKKPSVEVSKV 366
++ N + S KDI+ + + ++ Y F+ YN +K+ + + ++ K
Sbjct: 502 IIKRDYLNFKNKKILSFKDIKPKYDSQSDYHGNAIYYFMFYNKLKEFENIQNEKFKIKKE 561
Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFKDGF 423
K+Y+ IIDEINRG++SKIFGEL I+P R E KV Y F
Sbjct: 562 ILKSYIIIIDEINRGNVSKIFGELITLIEPSKRIGEKEELKVTLPYSG---------KEF 612
Query: 424 FVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERL 483
VP+NVYIIGTMN DRS+ ++D A+RRRF ++E+ P+ ++ +D +E ++ +
Sbjct: 613 GVPKNVYIIGTMNTADRSITSLDTALRRRFEFIEMMPDVSKLSIDCEGI--NLQELLKAI 670
Query: 484 NKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
N IE L IG A+F + EN + K++K I PLL+EY
Sbjct: 671 NTRIEYL--LDREKTIGHAFFISV-ENLESLKKVFKNRIIPLLQEYF 714
>gi|32266942|ref|NP_860974.1| putative endonuclease [Helicobacter hepaticus ATCC 51449]
gi|32262994|gb|AAP78040.1| putative endonuclease [Helicobacter hepaticus ATCC 51449]
Length = 670
Score = 134 bits (337), Expect = 2e-29, Method: Composition-based stats.
Identities = 108/367 (29%), Positives = 208/367 (56%), Gaps = 31/367 (8%)
Query: 191 EMAFVQFHPSYDYTDFVEGLRPVRDS-DNFGFELRNGVFKDFCAKALQNFKDSEKPIERL 249
++AF+ FH S+ Y +F+EG++P D+ N +E++NG+FK+ C +AL+N+++ + +
Sbjct: 257 QIAFITFHQSFSYEEFIEGIKPNTDNPQNMTYEVQNGIFKEICEEALKNYQEHQISNNKT 316
Query: 250 QK-EGSVREILEDF---IEEAIDEG--TKFKTSGTKNSFSIVENNE-RTITVEVPANEKT 302
+ + + +EI + + +++ +D G F S +I +N E ++I++ V +
Sbjct: 317 RDLQINAKEIFQSYALELKQKLDNGESINFLNKMKIQSVNINQNGEIKSISIGVDESPFQ 376
Query: 303 RLVK-LSKAELIDLMDNNISVKSGKDIQAHFHRKHRTQQDS-YIFVLYNIIKK---QAAK 357
L + + + ++ +N I K+ KDI+ + + + ++ Y F LY +++ K
Sbjct: 377 SLTQEIISRDYLNFKNNKI--KTYKDIKPRYESQSQWHGNAIYYFELYKKLQEFEETEYK 434
Query: 358 KPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDS 416
+ + KV K Y+ IIDEINRG+ISKI GEL ++P R G + +++
Sbjct: 435 QDFKPMQKVSLKPYILIIDEINRGNISKILGELITLLEPSKRIGSKEELSVTL------- 487
Query: 417 DPF-KDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEE 475
P+ K+ F VP+N+YIIGTMN DRS+ +D A+RRRF ++E+ P+ T +L++ +
Sbjct: 488 -PYGKENFGVPKNLYIIGTMNTADRSIALLDTALRRRFEFIEMMPDFT--LLNKDCEGMD 544
Query: 476 AKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL-RGFR 534
+E ++++N IE L + IG ++F ++ ++ ++ ++ I PLL+EY +
Sbjct: 545 LQELLQKMNARIEFL--LDREHTIGHSFFMEI-QSINELKGVFTKKIIPLLQEYFYEDYA 601
Query: 535 KTNEIMN 541
K + ++N
Sbjct: 602 KIDAVLN 608
>gi|57640944|ref|YP_183422.1| putative 5-methylcytosine restriction system, GTPase subunit
[Thermococcus kodakarensis KOD1]
gi|57159268|dbj|BAD85198.1| putative 5-methylcytosine restriction system, GTPase subunit
[Thermococcus kodakarensis KOD1]
Length = 828
Score = 133 bits (335), Expect = 3e-29, Method: Composition-based stats.
Identities = 115/404 (28%), Positives = 201/404 (49%), Gaps = 61/404 (15%)
Query: 157 LLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
LL++ K ++L G PGTGKTFMA+ + + + +FV FH SY Y DFVEG RP+
Sbjct: 414 LLDEYKQVILYGPPGTGKTFMARMFLRCINVPNTHYSFVTFHKSYSYEDFVEGYRPLTRE 473
Query: 217 DNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAI--DEGTKFK 274
+ +++G+FK KA + E++ D I+E + + T+ +
Sbjct: 474 GKIEYAVKDGIFKKLAIKA-------------------IYELMSDTIKEQLLPNYETQIE 514
Query: 275 TSGTKNSFSIVENN---ERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSGK----- 326
K ++ + ++ R I ++ ++K R+ AE +++ K+ K
Sbjct: 515 NHAKKIAWERLISDLKANRIIRNDIRVDDKGRMYV---AEYTIYDGDDLITKAEKLRELL 571
Query: 327 -DIQAHFHR-KHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKN--------YVFIID 376
D+++ F K + + F++ + +K + +S D N + +ID
Sbjct: 572 GDLESIFMTYKEEAEYEGVKFLVQRFLGILDSKISNGALSTEDINNLFTNNPKKFYLVID 631
Query: 377 EINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KDGFFVPENVYIIGTM 435
EINR D+S +FGEL ++ R ++ +N I P+ ++ F VP N+YIIGTM
Sbjct: 632 EINRADVSHVFGELITLLEKDKR-----ISEDNKNPIIVQLPYSRELFAVPSNLYIIGTM 686
Query: 436 NDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVE-EAKETMERLNKAIEETEGLG 494
N DR + +D A+RRRF+++EV P+ ++L+EL+ + ++ +N I ++G
Sbjct: 687 NSADRGISLLDVALRRRFAFLEVQPD--YNVLEELNLYGIRIDKLLKAINDRIIHSKG-S 743
Query: 495 SAYMIGPAYFRKLGE---NGDDFD------KLWKMNIEPLLREY 529
Y IG +YF +L E NG++ D ++W I PLL++Y
Sbjct: 744 KDYQIGHSYFLELKEALSNGNEDDALQKLIRIWYNRILPLLQDY 787
>gi|146294002|ref|YP_001184426.1| ATPase associated with various cellular activities, AAA_5
[Shewanella putrefaciens CN-32]
gi|145565692|gb|ABP76627.1| ATPase associated with various cellular activities, AAA_5
[Shewanella putrefaciens CN-32]
Length = 900
Score = 132 bits (332), Expect = 7e-29, Method: Composition-based stats.
Identities = 118/395 (29%), Positives = 188/395 (47%), Gaps = 63/395 (15%)
Query: 163 NLVLTGAPGTGKTFM---AQAIAKEMG----------------CSDDEMAFVQFHPSYDY 203
N + G PGTGKT++ A A + G + + FV FH SY Y
Sbjct: 467 NQIFFGPPGTGKTYITIEAAVKAADPGYVWEDRDDLKAHYDRLVNSGRIRFVTFHQSYSY 526
Query: 204 TDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFI 263
DFVEGL +E + GVF+ L N + E + S + + FI
Sbjct: 527 EDFVEGLSASATDGEISYEKKLGVFRK-----LVNAAREYRTTEVRKASESFSDCWQAFI 581
Query: 264 EEAIDE---GTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNI 320
++ +DE G KT ++ + VE+N T+ N+ + L+ + + + D
Sbjct: 582 KQ-LDESQNGVAIKTKRSQFVITEVEDN----TIRFDKNQGNSVHTLALSTVQAVFDGQR 636
Query: 321 SVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINR 380
+V G +Q ++ D+ I + ++ ++ +A ++V +NYV +IDEINR
Sbjct: 637 TVHGG--LQPYY--------DALIAHIRDLGQQLSA-------TEVVRQNYVLVIDEINR 679
Query: 381 GDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFK-DGFFVPENVYIIGTMNDID 439
G+IS+IFGEL I+P R + +E + P D F VP+N++IIGTMN D
Sbjct: 680 GNISRIFGELITLIEPSKRIGAAEA-------LEVTLPLTGDKFGVPDNLHIIGTMNTAD 732
Query: 440 RSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEE--TEGLGSAY 497
RS+ +D A+RRRF++VE+ P +LD L + + ++ + + + T L +
Sbjct: 733 RSLAGLDLALRRRFTFVEMPPK--PELLDGLVVAGDDGIDIGQMLRVMNQRITALLDRDH 790
Query: 498 MIGPAYFRKLGENG--DDFDKLWKMNIEPLLREYL 530
IG AYF L +N D ++ NI PLL+EY
Sbjct: 791 CIGHAYFMPLQDNPSLDLLADIFAQNILPLLQEYF 825
>gi|124004104|ref|ZP_01688951.1| 5-methylcytosine-specific restriction enzyme B [Microscilla marina
ATCC 23134]
gi|123990683|gb|EAY30163.1| 5-methylcytosine-specific restriction enzyme B [Microscilla marina
ATCC 23134]
Length = 433
Score = 131 bits (329), Expect = 1e-28, Method: Composition-based stats.
Identities = 120/400 (30%), Positives = 188/400 (47%), Gaps = 51/400 (12%)
Query: 162 KNLVLTGAPGTGKTFMAQAIAKEMGCSDD-----------------------EMAFVQFH 198
KN++L G PGTGKT+ A M + ++AF+ FH
Sbjct: 34 KNMILYGPPGTGKTYQTVNYALAMIENKSLEELAEEPRADLIKRFNAYKEKLQIAFITFH 93
Query: 199 PSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKD-SEKPIERLQKEGSVRE 257
SY Y DF++GLRP + FE R+G+FK +A +NF S++ + + + E + E
Sbjct: 94 QSYSYEDFIQGLRPNTNMGTLHFERRDGIFKRMADRARKNFDTFSQQQVFKKRFEDLLNE 153
Query: 258 ILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAEL-IDLM 316
+L I+ +E + S + SI+ T+ K ++K E+ ID +
Sbjct: 154 LLIKNIDPETEEIEVYLDSSHRIYQSIIIFEMTDTTLFYKRRTKRDIIKNESKEMNIDTL 213
Query: 317 DNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIID 376
N +D+ K Q Y V+ + + + KP E S +NYV IID
Sbjct: 214 KNIY-----EDVT---FVKDAINQKYYEAVVQAVRQYEENHKP--EKSLQQLQNYVVIID 263
Query: 377 EINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMN 436
EINR +IS++FGEL I+ R N + + P + F VP N+YI+GTMN
Sbjct: 264 EINRANISRVFGELITLIESDKR-------YGSDNGLSVTLPSGENFTVPANLYILGTMN 316
Query: 437 DIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEGLGSA 496
DRS+ +D A+RRRF + + P+ + L +E K+ + LN+ I + E
Sbjct: 317 TADRSIALIDTALRRRFVFEAIYPDAS------LIADKEVKKVFKDLNEKILQ-EKNSPD 369
Query: 497 YMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKT 536
Y+IG A+F +G+ +D +++ + PLL EY R T
Sbjct: 370 YLIGQAFF--IGKAMEDLPQVFNYQLIPLLLEYFPNRRDT 407
>gi|85711475|ref|ZP_01042533.1| hypothetical protein OS145_08853 [Idiomarina baltica OS145]
gi|85694627|gb|EAQ32567.1| hypothetical protein OS145_08853 [Idiomarina baltica OS145]
Length = 678
Score = 130 bits (326), Expect = 3e-28, Method: Composition-based stats.
Identities = 121/399 (30%), Positives = 180/399 (45%), Gaps = 62/399 (15%)
Query: 158 LEQNKNLVLTGAPGTGKTF-------------MAQAIAKEMGCSDDEMA------FVQFH 198
+ Q N +L G PGTGKTF + A E+ E+ FV FH
Sbjct: 246 VSQPLNQILFGPPGTGKTFTTIERAVRAAEPNFSWANRDELKAKYQELIREGRIRFVTFH 305
Query: 199 PSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREI 258
S+ Y DFVEGL D + +E R G+F+ A ++ + E S +
Sbjct: 306 QSFSYEDFVEGLTAHTDDEKLVYEKRLGIFRQIVRDAKEH-----QNTEVKNPTNSFSDC 360
Query: 259 LEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDN 318
+ F+ E D + S ++ F I E + TI + N+ + LS + L + +
Sbjct: 361 WDAFLTEFEDHPEGVQISMKRSKFIITEVDGNTIRFD--KNQGDSVNTLSVSTLEAIFNG 418
Query: 319 NISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEI 378
G + + S++ L + K+A K+ +NYV IIDEI
Sbjct: 419 ERRFNGGL-------KPYYQSLISHLESLGEQLDKKAVKR----------QNYVLIIDEI 461
Query: 379 NRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFK-DGFFVPENVYIIGTMND 437
NRG+IS+IFGEL I+P R + +E + P D F VP+N+YIIGTMN
Sbjct: 462 NRGNISRIFGELITLIEPSKR-------SGTTEALEVTLPLTGDRFSVPDNLYIIGTMNT 514
Query: 438 IDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEE--TEGLGS 495
DRS+ +D A+RRRF ++E+ P + +EL V +E++ I T L
Sbjct: 515 ADRSLAGLDLALRRRFDFIEMPP-----LPEELKGVSVDGINVEKMLDVINRRITALLDK 569
Query: 496 AYMIGPAYFRKLGENGD----DFDKLWKMNIEPLLREYL 530
+ IG AYF L + D D +++K I PLL+EY
Sbjct: 570 DHCIGHAYFIHLKDRSDVALTDLAEIFKQKIIPLLQEYF 608
>gi|45358318|ref|NP_987875.1| ATP/GTP-binding site motif A (P-loop) [Methanococcus maripaludis
S2]
gi|44921076|emb|CAF30311.1| ATP/GTP-binding site motif A (P-loop) [Methanococcus maripaludis
S2]
Length = 604
Score = 126 bits (317), Expect = 3e-27, Method: Composition-based stats.
Identities = 125/401 (31%), Positives = 195/401 (48%), Gaps = 78/401 (19%)
Query: 163 NLVLTGAPGTGKTF--MAQAIA--------------------KEMGCSDDEMAFVQFHPS 200
N +L G PGTGKT+ + +A+A KE G ++ F+ FH S
Sbjct: 165 NTILYGPPGTGKTYRVIEEAVAIIDGKIPKGRVNLVKRYKELKERG----QIEFITFHQS 220
Query: 201 YDYTDFVEGLRPV---RDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVRE 257
Y Y DF+EG++PV D ++ +++ +G+FK KA++ K S E+ K
Sbjct: 221 YCYEDFIEGIKPVLENSDENSIEYKIEDGIFKKMVNKAIE-VKSSSNFDEKYAK------ 273
Query: 258 ILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMD 317
+ED +E+ +G + +T K F + N+ T V +P E + ++K L D +
Sbjct: 274 FVEDVLEQ---DGIELETLAQKKPFRVRINSNET-AVAIPKTEAATRLSVTKEMLRDYIV 329
Query: 318 NNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDE 377
N+ +IQ + + Y+ Y I +VE + K +V IIDE
Sbjct: 330 ND-------NIQGW--KPYTPAIGEYLKNKYGI---------TVENTDNTNKKFVLIIDE 371
Query: 378 INRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPF-KDGFFVPENVYIIGTM 435
INRG+ISKIFGEL I+P R GE ++ P+ K F +P N+YI+GTM
Sbjct: 372 INRGNISKIFGELITLIEPDKRIGELNELTVTL--------PYSKKDFGLPSNLYILGTM 423
Query: 436 NDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEGLGS 495
N DRS+ +D A+RRRF + E+ P D + + ++ + + +E +NK IE G
Sbjct: 424 NTADRSIALVDTALRRRFEFNEMMP-DVKKLGFDIKGI-QIDIMLESINKRIEYFR--GR 479
Query: 496 AYMIGPAYFRKLGENGDD---FDKL---WKMNIEPLLREYL 530
+ IG AYF L ++ F KL ++ + PLL+EY
Sbjct: 480 DHTIGHAYFMDLINETNEQVRFKKLQEIFQYKVIPLLQEYF 520
>gi|78060551|ref|YP_367126.1| GTPase subunit of restriction endonuclease-like [Burkholderia sp.
383]
gi|77965101|gb|ABB06482.1| GTPase subunit of restriction endonuclease-like [Burkholderia sp.
383]
Length = 696
Score = 125 bits (315), Expect = 5e-27, Method: Composition-based stats.
Identities = 130/484 (26%), Positives = 205/484 (42%), Gaps = 113/484 (23%)
Query: 163 NLVLTGAPGTGKTF---------------------MAQAIAKEMGCSD------DEMA-- 193
N +L G PGTGKT+ ++ A A + DE+A
Sbjct: 175 NTILYGPPGTGKTYATIDETLRVLDPELLAQYPEPVSNAAADNLNRRSALKTRFDELAQA 234
Query: 194 ----FVQFHPSYDYTDFVEGLRPVRDSD-NFGFELRNGVFKDFC-----AKALQNFKDSE 243
FV FH S+ Y DFVEG+R V S+ +++ +GVFK C A A ++E
Sbjct: 235 GRVRFVTFHQSFSYEDFVEGIRAVSHSNGQISYQVVDGVFKALCDRARGAAATNTSVETE 294
Query: 244 KPIE----RLQK------EGSVREILEDFIEEA---IDEGTKFKTSGTKN----SFSIVE 286
PI+ R+ K EG + +D I++ + G +G + S + E
Sbjct: 295 PPIKLSGRRIWKMSLGAAEGDDAYVYDDCIKQGMALLGYGYALDYTGCVSRADVSARMRE 354
Query: 287 NNERTITVEVPANEKTRLVKLSK-AELIDLMDNNISVKSGKDIQAHFHRKHRTQQDSY-- 343
+ + + A + + K +L+ + D N+ ++ +I + R + D Y
Sbjct: 355 HGHQPDVNDYAATAVNIFINVMKMGDLLVVTDGNLKFRALGEITGPYRHIEREEGDDYRQ 414
Query: 344 -------------------------IFVLY-------NIIKKQAAKKPSVEVSKVDTKNY 371
LY ++ K A P+ + VD Y
Sbjct: 415 SRAVRWLRSYEPSLAFGELMNNRFSQMTLYELRDGSIDMTKLDALLAPAPPPTGVDATPY 474
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
V IIDEINRG++S+IFGEL I+P R G + PF VP+NVY+
Sbjct: 475 VLIIDEINRGNVSRIFGELITLIEPSKRA--GNPEALTVTLPYSQTPFT----VPDNVYL 528
Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMER----LNKAI 487
+GTMN DRS+ +D A+RRRF++ E+ P D L V+ A + R +N+ I
Sbjct: 529 LGTMNTADRSLTGLDIALRRRFTFREMAPRP-----DFLDDVDVAGVNIGRMLAVMNERI 583
Query: 488 EETEGLGSAYMIGPAYFRKLGENG----DDFDKLWKMNIEPLLREY-LRGFRKTNEIMNQ 542
E L +M+G AYF L G + ++++ + PLL+EY + + ++N
Sbjct: 584 ELL--LDRDHMLGHAYFMPLAAEGGNTLETLARIFRHQVFPLLQEYFFEDWERIIWVLND 641
Query: 543 LREA 546
R+A
Sbjct: 642 HRKA 645
>gi|148926310|ref|ZP_01809994.1| putative endonuclease [Campylobacter jejuni subsp. jejuni CG8486]
gi|145844702|gb|EDK21807.1| putative endonuclease [Campylobacter jejuni subsp. jejuni CG8486]
Length = 531
Score = 125 bits (313), Expect = 9e-27, Method: Composition-based stats.
Identities = 121/395 (30%), Positives = 189/395 (47%), Gaps = 66/395 (16%)
Query: 163 NLVLTGAPGTGKTFMA-----QAIAKEMGCSDDEMA------------FVQFHPSYDYTD 205
N +L G+PGTGKT+ + + + + D++ A F FH SY Y +
Sbjct: 117 NQILYGSPGTGKTYHTIDKALEILGENLESRDEKKAKFDEYVKNGQIVFTTFHQSYGYEE 176
Query: 206 FVEGLRPVRDSDN----FGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILED 261
FVEG++P DS+ +E+++G+FK+ C KAL+N +DS K +
Sbjct: 177 FVEGIKPHIDSEENSKEIKYEIKDGIFKELCEKALEN-RDSIKNF--------------N 221
Query: 262 FIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNIS 321
F + + E K + + F + N + +I N KT +K D+ N+
Sbjct: 222 FYIDKLKEKVKIDDNNPEKYFEL-PNTKYSIQYR---NGKTFRIKFD-----DMSKNHKD 272
Query: 322 VKSGKDIQAHFHRKHRTQQ---DSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEI 378
D ++ + +Y+ + N +K Q + + KV+ Y+ IIDEI
Sbjct: 273 YPVSIDNIEKLYKTSNIDEIYNSAYVRAILNYLKLQGLEDYKEKDEKVNLP-YIIIIDEI 331
Query: 379 NRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTM 435
NRG++SKIFGEL I+ R E KV Y F VP+NVYIIGTM
Sbjct: 332 NRGNVSKIFGELITLIEASKRIGEKEELKVTLPYSG---------KEFGVPKNVYIIGTM 382
Query: 436 NDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEGLGS 495
N DRS+ ++D A+RRRF ++E+ P+ ++ +D +E ++ +N IE L
Sbjct: 383 NTADRSITSLDTALRRRFEFIEMMPDVSKLSMDCEGI--NLQELLKAINTRIEYL--LDR 438
Query: 496 AYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
IG A+F + EN +D K++K I PLL+EY
Sbjct: 439 EKTIGHAFFISV-ENLEDLKKVFKNKIIPLLQEYF 472
>gi|90410149|ref|ZP_01218166.1| GTPase subunit of restriction endonuclease [Photobacterium
profundum 3TCK]
gi|90329502|gb|EAS45759.1| GTPase subunit of restriction endonuclease [Photobacterium
profundum 3TCK]
Length = 846
Score = 123 bits (308), Expect = 3e-26, Method: Composition-based stats.
Identities = 121/416 (29%), Positives = 187/416 (44%), Gaps = 71/416 (17%)
Query: 146 EPTRKYAKYIELLEQNKNLVLTGAPGTGKTF-------------MAQAIAKEMGCSDDEM 192
EPT IE + N +L G PGTGKT+ A E+ DE+
Sbjct: 364 EPTMN----IESVATPLNQILYGPPGTGKTYHTIEASVKAAEPNFTFANRNELKGKYDEL 419
Query: 193 A------FVQFHPSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPI 246
FV FH SY Y +FVEGL + D + ++G+FK +A D +
Sbjct: 420 VMANRIRFVTFHQSYGYEEFVEGLSAKTEGDQVSYYEKDGIFKVISEEA-----DKYRET 474
Query: 247 ERLQKEGSVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVK 306
+ ++ + + FI E + + + + F++ + + TI E + T
Sbjct: 475 KTVKGDSDFDSLWSYFIAELSQIESGIRVNTIRTFFTVTDVDNNTIRFEKDKGDST---- 530
Query: 307 LSKAELIDLMDNNISVKSGKDIQAHFHRKHRTQQ--DSYIFVLYNIIKKQAAKKPSVEVS 364
+++SVK+ ++A F+R+ + + Y L IK A E
Sbjct: 531 -----------HSLSVKT---LKAIFNREREIKGGLNPYYSAL---IKHLAIYSNRTEEV 573
Query: 365 KVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFF 424
KN+V +IDEINRG+ISKIFGEL I+P +R Q ++ + D F
Sbjct: 574 HTQRKNFVLVIDEINRGNISKIFGELITLIEPS---KRKGATEQIDVVLPHTG---DNFS 627
Query: 425 VPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVE-EAKETMERL 483
VP+N++IIGTMN DRS+ MD A+RRRF +VE+ P +L +S + ++ + L
Sbjct: 628 VPDNLHIIGTMNTADRSLAMMDTALRRRFDFVEMMPK--PELLSGVSVNGIDLQKLLTVL 685
Query: 484 NKAIEETEGLGSAYMIGPAYFRKLGENGDDFDK---------LWKMNIEPLLREYL 530
N+ IE + +G A+F + E D D+ ++K I PLL EY
Sbjct: 686 NQRIEVL--YDREHTLGHAFFMTVKEKRDQVDENAAFDELQSVFKNKIIPLLEEYF 739
>gi|57240286|ref|ZP_00368235.1| endonuclease, probable [Campylobacter lari RM2100]
gi|57018627|gb|EAL55400.1| endonuclease, probable [Campylobacter lari RM2100]
Length = 638
Score = 121 bits (304), Expect = 1e-25, Method: Composition-based stats.
Identities = 81/206 (39%), Positives = 125/206 (60%), Gaps = 21/206 (10%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
Y FI DEINR ++S++FGEL +A++ YRGE+GK+ TQY ++ D D F+VPENV+
Sbjct: 438 YFFIADEINRAELSRVFGELLYALE--YRGEKGKIKTQYASMRNDED-----FYVPENVF 490
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDEL--SCVEEAKETMERLNKAIE 488
+GTMND+D+S+++ D A+RRRF W E+ D + DE+ + +EE + ++LN I
Sbjct: 491 FLGTMNDLDKSIDSFDLALRRRFIWQEME-CDYNVIRDEIYANNIEEYAQACKKLNDKI- 548
Query: 489 ETEGLGSAYMIGPAYFRKLGENGD-----DFDKLWKMNIEPLLREYLRGFRKTNEI---M 540
++ +G Y +G +YF K+ D D KL+ E LL+EYLR EI +
Sbjct: 549 -SKNIGEKYQLGHSYFLKIEFKNDEIKDSDMKKLFSNRFEALLKEYLRSEYSEKEIQKHL 607
Query: 541 NQLREAYVGEK-EEEHSNIPELTDEN 565
+ L++ +V EK E N P+ ++N
Sbjct: 608 DGLKKLFVIEKPNEPKPNEPKTNEKN 633
Score = 72.4 bits (176), Expect = 7e-11, Method: Composition-based stats.
Identities = 40/109 (36%), Positives = 66/109 (60%), Gaps = 5/109 (4%)
Query: 154 YIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEMAFVQFHPSYDYTDFVEGLRPV 213
+ +LL+ +KN++ G PGTGKT+ K + ++++M QFHPS+ Y DF+EG++P
Sbjct: 331 FKKLLKTHKNIIFHGIPGTGKTYTIVNNVKNIIKNENQMLITQFHPSFSYEDFIEGIKPA 390
Query: 214 R-DSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILED 261
++ EL+NG+F++FC KA K+ EK ++G+ E L D
Sbjct: 391 GIENGQLKLELKNGIFREFCDKA----KEEEKGFLEKLEKGNFNEALSD 435
>gi|88597447|ref|ZP_01100682.1| McrBC restriction endonuclease system, McrB subunit, putative
[Campylobacter jejuni subsp. jejuni 84-25]
gi|88190508|gb|EAQ94482.1| McrBC restriction endonuclease system, McrB subunit, putative
[Campylobacter jejuni subsp. jejuni 84-25]
Length = 591
Score = 118 bits (296), Expect = 9e-25, Method: Composition-based stats.
Identities = 100/323 (30%), Positives = 159/323 (49%), Gaps = 56/323 (17%)
Query: 163 NLVLTGAPGTGKTFMA-----QAIAKEMGCSDDEMA------------FVQFHPSYDYTD 205
N +L G+PGTGKT+ + + + + D++ A F FH SY Y +
Sbjct: 117 NQILYGSPGTGKTYHTIDKALEILGENLESRDEKKAKFDEYVKNGQIVFTTFHQSYGYEE 176
Query: 206 FVEGLRPVRDSD---NFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDF 262
FVEG++P +SD +++++G+FK+ C KAL+N D E + ++ E
Sbjct: 177 FVEGIKPSLNSDENSQINYKVKDGIFKELCKKALENRDDIE------SFNFYINDLKEKT 230
Query: 263 IEEAIDEGTKFKTSGTKNSFSIVENNERTITV---EVPANEKTRLVKLSKAELIDLMDNN 319
E+A + F+ TK +SI +T + ++ N K V + E + N
Sbjct: 231 KEDANNPEKYFQLPNTK--YSIQYRGGKTFRIKFDDMSKNHKDYPVSIDNIEKLYKTSNI 288
Query: 320 ISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEIN 379
+ + +Y+ + N +K Q K + K++ Y+ IIDEIN
Sbjct: 289 DEIYN----------------SAYVKAILNYLKSQGLKDYKEKDEKINLP-YIIIIDEIN 331
Query: 380 RGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFK-DGFFVPENVYIIGTMNDI 438
RG++SKIFGEL I+P R + +E + P+ + F VP+NVYIIGTMN
Sbjct: 332 RGNVSKIFGELITLIEPSKR-------LGNEEALELTLPYSGEKFGVPKNVYIIGTMNTA 384
Query: 439 DRSVENMDFAMRRRFSWVEVTPN 461
DRS+ ++D A+RRRF +VE+ PN
Sbjct: 385 DRSITSLDTALRRRFEFVEMMPN 407
>gi|75212130|ref|ZP_00712170.1| COG1401: GTPase subunit of restriction endonuclease [Escherichia
coli B171]
Length = 549
Score = 115 bits (288), Expect = 8e-24, Method: Composition-based stats.
Identities = 110/405 (27%), Positives = 180/405 (44%), Gaps = 66/405 (16%)
Query: 162 KNLVLTGAPGTGKTFMAQAIAKEMG---------------------------CSDDEMAF 194
KN +L G PGTGKT+ IA ++ D+ + F
Sbjct: 94 KNTILYGPPGTGKTYRTIEIAVQICDPIAYSLQEGKDESEKRRELKKIYDQLIKDNRVRF 153
Query: 195 VQFHPSYDYTDFVEGLRP-VRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
+ FH S+ Y +F+EGLR D N +E++ G+FK C A +++ ++
Sbjct: 154 ITFHQSFGYEEFIEGLRAETTDDGNVKYEIKAGIFKQICEDAAFGHAGAQEMLD------ 207
Query: 254 SVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELI 313
S L++ + E E +T K +F + ++ + ++K L + A L
Sbjct: 208 SALTRLQERLSEG--ENITLETQQGK-AFQLTYKSQTNFGIFPSQSKKEDLGQGYNAYLK 264
Query: 314 DLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYN-IIKKQAAKKPSVEVSKVDTKNYV 372
D+ Q + + + SY+ + N +I ++ + V+ +NYV
Sbjct: 265 DIR------------QVYQDPRAKVHNPSYVRSILNYLINQRYLPLNTQSVASEKKENYV 312
Query: 373 FIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYII 432
IIDEINRG+ISKIFGEL I+P R G+ + + S PF VP N+Y+I
Sbjct: 313 LIIDEINRGNISKIFGELITLIEPSKRA--GEPESLSVLLPYSSTPFS----VPNNLYLI 366
Query: 433 GTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEG 492
GTMN D S+ +D A+RRRF + + P D + D + + ++ LN I+
Sbjct: 367 GTMNTADHSLTALDTALRRRFDFEAMLP-DITVLKDTVIKGIDLPRLLQTLNDRIQVL-- 423
Query: 493 LGSAYMIGPAYFRKLGENGDD-------FDKLWKMNIEPLLREYL 530
+M+G A+F + + +D F ++ + I PLL EY
Sbjct: 424 YDREHMLGHAFFIPVVQAKEDEALAFERFKRIMRNKILPLLEEYF 468
>gi|66046953|ref|YP_236794.1| ATPas [Pseudomonas syringae pv. syringae B728a]
gi|63257660|gb|AAY38756.1| ATPas [Pseudomonas syringae pv. syringae B728a]
Length = 517
Score = 113 bits (283), Expect = 3e-23, Method: Composition-based stats.
Identities = 118/426 (27%), Positives = 199/426 (46%), Gaps = 85/426 (19%)
Query: 163 NLVLTGAPGTGKT--------------FMAQAIAKEMGCS---DDEMA-----FVQFHPS 200
N + G PGTGKT F+A+ + D+ +A FV FH S
Sbjct: 5 NQIFFGPPGTGKTYATVEATLQILDQPFLAKNLDNRSALKARFDELLAAGDVRFVTFHQS 64
Query: 201 YDYTDFVEGLRPVRDSD-NFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREIL 259
+ Y DFVEGLR D +E+ +GVFK C E + E S +
Sbjct: 65 FSYEDFVEGLRATTDEQGQIRYEVVSGVFKSLC--------------ESIASELSGKY-- 108
Query: 260 EDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNN 319
A G ++ T + ++ N+ + +E P + L L++ + ++
Sbjct: 109 -----RAFKVGERYGTG-----YKVIRANDDILELEKPKGKNFGLA----MSLLNALADD 154
Query: 320 IS--VKSGKDIQ-AHFHRK-HRTQQDSYIFVLY---------NIIKKQAAKKPSVEVSKV 366
+S V S D+ ++ K + D Y+ Y +++ K+ + EV++
Sbjct: 155 VSQGVLSVNDLSTGNWEEKLPNSTYDPYLVKGYRNIVPVLIEHMLSKRNEDFRTAEVAQS 214
Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KDGFFV 425
+ + V IIDEINRG++S+IFGEL I+P R + +E + P+ K+ F +
Sbjct: 215 E-RPKVLIIDEINRGNVSRIFGELITLIEPSKRAGASEA-------LEVTLPYSKERFCI 266
Query: 426 PENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEA-KETMERLN 484
P N+++IGTMN DRS+ +D A+RRRF+++EV PN +L+++ A E + +N
Sbjct: 267 PSNIHLIGTMNTSDRSLAALDIALRRRFTFIEVPPN--PELLEDIEVDGIAIDELLSVMN 324
Query: 485 KAIEETEGLGSAYMIGPAYFRKLGENGDDFDKL---WKMNIEPLLREY-LRGFRKTNEIM 540
+ I L + +G AYF L E+ ++L ++ I PLL+EY +++ ++
Sbjct: 325 QRIAVL--LDQDHCLGHAYFMPL-ESDPTLERLAGIFQEQILPLLQEYFFEDWQRIQWVL 381
Query: 541 NQLREA 546
N R+A
Sbjct: 382 NDQRKA 387
>gi|77974092|ref|ZP_00829635.1| COG1401: GTPase subunit of restriction endonuclease [Yersinia
frederiksenii ATCC 33641]
Length = 687
Score = 112 bits (280), Expect = 6e-23, Method: Composition-based stats.
Identities = 114/406 (28%), Positives = 180/406 (44%), Gaps = 68/406 (16%)
Query: 162 KNLVLTGAPGTGKTFMA----------QAIAKEMGCSDDE-----------------MAF 194
KN +L G PGTGKT+ A + + G ++E + F
Sbjct: 229 KNTILYGPPGTGKTYRTIELAVRACEPAAYSLQEGKEENEKRRELKKIYDRLIAEKRVRF 288
Query: 195 VQFHPSYDYTDFVEGLRP-VRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
+ FH S+ Y +F+EGLR D N +E++ G+FK C A ++ ++
Sbjct: 289 ITFHQSFGYEEFIEGLRAETTDDGNVRYEIKAGIFKQICEDAAFGHAGVQQKLD------ 342
Query: 254 SVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELI 313
E L E + G+ + +F + ++ T + ++K L + A L
Sbjct: 343 ---EALARLQERLSESGSITLETLQGKAFQLAYKSQTTFGIFPSQSKKEDLGQGYNAYL- 398
Query: 314 DLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAA--KKPSVEVSKVDTKNY 371
NIS+ ++ QA H SY+ + N + KQ P VS+ +NY
Sbjct: 399 ----KNISLVY-QNPQAKVHNP------SYVRSILNYLIKQEGLPSNPQESVSE-KRQNY 446
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPF-KDGFFVPENV 429
V IIDEINRG+ISKIFGEL I+ R GE ++ P+ F VP N+
Sbjct: 447 VLIIDEINRGNISKIFGELITLIETSKRAGEPEALSVML--------PYSSSSFSVPNNL 498
Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNKA 486
Y+IGTMN DRS+ +D A+RRRF + + P+ T E+++ + + +R+
Sbjct: 499 YLIGTMNTADRSLTALDTALRRRFEFEAMLPDITVLKETVVKGIDLPRLLQTLNDRIEVL 558
Query: 487 IEETEGLGSAYMIGPAYFRKLGEN--GDDFDKLWKMNIEPLLREYL 530
+ LG A+ I P K E+ + ++ + + PLL EY
Sbjct: 559 YDREHTLGHAFFI-PVVQVKEDEDLAFERLKRIMRNKVLPLLEEYF 603
>gi|22127668|ref|NP_671091.1| hypothetical protein y3797 [Yersinia pestis KIM]
gi|21960783|gb|AAM87342.1|AE013982_9 hypothetical [Yersinia pestis KIM]
Length = 688
Score = 111 bits (277), Expect = 1e-22, Method: Composition-based stats.
Identities = 115/405 (28%), Positives = 181/405 (44%), Gaps = 66/405 (16%)
Query: 162 KNLVLTGAPGTGKTFMA----------QAIAKEMGCSDDE-----------------MAF 194
KN +L G PGTGKT+ A + + G ++E + F
Sbjct: 230 KNTILYGPPGTGKTYCTIELAVRACEPAAYSLQEGKEENEKRRELKKVYDRLIAEKRVRF 289
Query: 195 VQFHPSYDYTDFVEGLRP-VRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
+ FH S+ Y +F+EGLR D N +E++ G+FK C A ++ ++
Sbjct: 290 ITFHQSFGYEEFIEGLRAETTDDGNVRYEVKAGIFKQICEDAAFGHAGVQQKLD------ 343
Query: 254 SVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELI 313
E L E + G+ + +F + ++ T + ++K L + A L
Sbjct: 344 ---EALARLQERLSESGSITLETLQGKAFQLAYKSQTTFGIFPSQSKKEDLGQGYNAYL- 399
Query: 314 DLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAA--KKPSVEVSKVDTKNY 371
NIS+ ++ QA H SY+ + N + KQ P VS+ +NY
Sbjct: 400 ----KNISLVY-QNPQAKVHNP------SYVRSILNYLIKQEGLPSNPQESVSE-KRQNY 447
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
V IIDEINRG+ISKIFGEL I+ R GE ++ I+ S F VP N+Y
Sbjct: 448 VLIIDEINRGNISKIFGELITLIETSKRAGEPEALSV----ILPYS---SSSFSVPNNLY 500
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNKAI 487
+IGTMN DRS+ +D A+RRRF + + P+ T E+++ + + +R+
Sbjct: 501 LIGTMNTADRSLTALDTALRRRFEFEAMLPDITVLKETVVKGIDLPRLLQTLNDRIEVLY 560
Query: 488 EETEGLGSAYMIGPAYFRKLGEN--GDDFDKLWKMNIEPLLREYL 530
+ LG A+ I P K E+ + ++ + + PLL EY
Sbjct: 561 DREHTLGHAFFI-PVVQVKEDEDLAFERLKRIMRNKVLPLLEEYF 604
>gi|16120721|ref|NP_404034.1| hypothetical protein YPO0387 [Yersinia pestis CO92]
gi|45443526|ref|NP_995065.1| GTPase subunit of restriction endonuclease [Yersinia pestis biovar
Microtus str. 91001]
gi|77632991|ref|ZP_00795151.1| COG1401: GTPase subunit of restriction endonuclease [Yersinia
pestis Angola]
gi|89103250|ref|ZP_01175836.1| COG1401: GTPase subunit of restriction endonuclease [Yersinia
pestis biovar Orientalis str. IP275]
gi|108809887|ref|YP_653803.1| hypothetical protein YPA_3897 [Yersinia pestis Antiqua]
gi|108810424|ref|YP_646191.1| hypothetical protein YPN_0258 [Yersinia pestis Nepal516]
gi|150260570|ref|ZP_01917298.1| hypothetical protein YPE_2882 [Yersinia pestis CA88-4125]
gi|45438395|gb|AAS63942.1| GTPase subunit of restriction endonuclease [Yersinia pestis biovar
Microtus str. 91001]
gi|108774072|gb|ABG16591.1| hypothetical protein YPN_0258 [Yersinia pestis Nepal516]
gi|108781800|gb|ABG15858.1| hypothetical protein YPA_3897 [Yersinia pestis Antiqua]
gi|115346200|emb|CAL19068.1| hypothetical protein [Yersinia pestis CO92]
gi|149289978|gb|EDM40055.1| hypothetical protein YPE_2882 [Yersinia pestis CA88-4125]
Length = 687
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 115/405 (28%), Positives = 181/405 (44%), Gaps = 66/405 (16%)
Query: 162 KNLVLTGAPGTGKTFMA----------QAIAKEMGCSDDE-----------------MAF 194
KN +L G PGTGKT+ A + + G ++E + F
Sbjct: 229 KNTILYGPPGTGKTYCTIELAVRACEPAAYSLQEGKEENEKRRELKKVYDRLIAEKRVRF 288
Query: 195 VQFHPSYDYTDFVEGLRP-VRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
+ FH S+ Y +F+EGLR D N +E++ G+FK C A ++ ++
Sbjct: 289 ITFHQSFGYEEFIEGLRAETTDDGNVRYEVKAGIFKQICEDAAFGHAGVQQKLD------ 342
Query: 254 SVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELI 313
E L E + G+ + +F + ++ T + ++K L + A L
Sbjct: 343 ---EALARLQERLSESGSITLETLQGKAFQLAYKSQTTFGIFPSQSKKEDLGQGYNAYL- 398
Query: 314 DLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAA--KKPSVEVSKVDTKNY 371
NIS+ ++ QA H SY+ + N + KQ P VS+ +NY
Sbjct: 399 ----KNISLVY-QNPQAKVHNP------SYVRSILNYLIKQEGLPSNPQESVSE-KRQNY 446
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
V IIDEINRG+ISKIFGEL I+ R GE ++ I+ S F VP N+Y
Sbjct: 447 VLIIDEINRGNISKIFGELITLIETSKRAGEPEALSV----ILPYS---SSSFSVPNNLY 499
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNKAI 487
+IGTMN DRS+ +D A+RRRF + + P+ T E+++ + + +R+
Sbjct: 500 LIGTMNTADRSLTALDTALRRRFEFEAMLPDITVLKETVVKGIDLPRLLQTLNDRIEVLY 559
Query: 488 EETEGLGSAYMIGPAYFRKLGEN--GDDFDKLWKMNIEPLLREYL 530
+ LG A+ I P K E+ + ++ + + PLL EY
Sbjct: 560 DREHTLGHAFFI-PVVQVKEDEDLAFERLKRIMRNKVLPLLEEYF 603
>gi|1854380|dbj|BAA19243.1| NcrB [Escherichia coli]
Length = 465
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 77/199 (38%), Positives = 107/199 (53%), Gaps = 29/199 (14%)
Query: 346 VLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKV 405
+ YN + QA ++P K YVFIIDEINR ++SK+FGE+ ++ RGE V
Sbjct: 264 IFYNFCQ-QAKEQPE--------KKYVFIIDEINRANLSKVFGEVMMLMEHDKRGENWSV 314
Query: 406 NTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTE 464
Y S+ ++ F+VPENVYIIG MN DRS+ +D+A+RRRFS++++ P DT
Sbjct: 315 PLTY------SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTP 368
Query: 465 SMLD-------ELSCVEEAKETMERLNKAI-EETEGLGSAYMIGPAYFRKLGENGDDFDK 516
+ E S VE + M LN+ I +E LG + IG +YF E+G D
Sbjct: 369 QFRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCSGLEDGTSPDT 428
Query: 517 LW-----KMNIEPLLREYL 530
W +I PLL EY
Sbjct: 429 QWLKEIVMTDIAPLLEEYF 447
Score = 62.8 bits (151), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 147 PTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGC--SDDEMAFVQFHPSYDYT 204
P ++ L KN++L G PG GKTF+A+ +A + + + VQFH SY Y
Sbjct: 186 PETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 245
Query: 205 DFVEGLRPVRDSDNFGFELRNGVFKDFCAKA 235
DF++G RP + GF ++G+F +FC +A
Sbjct: 246 DFIQGYRP----NGVGFRRKDGIFYNFCQQA 272
>gi|145600497|ref|YP_001164573.1| hypothetical protein YPDSF_3243 [Yersinia pestis Pestoides F]
gi|145212193|gb|ABP41600.1| hypothetical protein YPDSF_3243 [Yersinia pestis Pestoides F]
Length = 687
Score = 111 bits (277), Expect = 2e-22, Method: Composition-based stats.
Identities = 114/405 (28%), Positives = 181/405 (44%), Gaps = 66/405 (16%)
Query: 162 KNLVLTGAPGTGKTFMAQAIA---------------------KEMG------CSDDEMAF 194
KN +L G PGTGKT+ +A +E+ ++ + F
Sbjct: 229 KNTILYGPPGTGKTYCTIELAVRACEPAAYLLQEGKEENEKRRELKKVYDRLIAEKRVRF 288
Query: 195 VQFHPSYDYTDFVEGLRP-VRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
+ FH S+ Y +F+EGLR D N +E++ G+FK C A ++ ++
Sbjct: 289 ITFHQSFGYEEFIEGLRAETTDDGNVRYEVKAGIFKQICEDAAFGHAGVQQKLD------ 342
Query: 254 SVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELI 313
E L E + G+ + +F + ++ T + ++K L + A L
Sbjct: 343 ---EALARLQERLSESGSITLETLQGKAFQLAYKSQTTFGIFPSQSKKEDLGQGYNAYL- 398
Query: 314 DLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAA--KKPSVEVSKVDTKNY 371
NIS+ ++ QA H SY+ + N + KQ P VS+ +NY
Sbjct: 399 ----KNISLVY-QNPQAKVHNP------SYVRSILNYLIKQEGLPSNPQESVSE-KRQNY 446
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
V IIDEINRG+ISKIFGEL I+ R GE ++ I+ S F VP N+Y
Sbjct: 447 VLIIDEINRGNISKIFGELITLIETSKRAGEPEALSV----ILPYS---SSSFSVPNNLY 499
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNKAI 487
+IGTMN DRS+ +D A+RRRF + + P+ T E+++ + + +R+
Sbjct: 500 LIGTMNTADRSLTALDTALRRRFEFEAMLPDITVLKETVVKGIDLPRLLQTLNDRIEVLY 559
Query: 488 EETEGLGSAYMIGPAYFRKLGEN--GDDFDKLWKMNIEPLLREYL 530
+ LG A+ I P K E+ + ++ + + PLL EY
Sbjct: 560 DREHTLGHAFFI-PVVQVKEDEDLAFERLKRIMRNKVLPLLEEYF 603
>gi|153807704|ref|ZP_01960372.1| hypothetical protein BACCAC_01986 [Bacteroides caccae ATCC 43185]
gi|149129313|gb|EDM20527.1| hypothetical protein BACCAC_01986 [Bacteroides caccae ATCC 43185]
Length = 580
Score = 110 bits (276), Expect = 2e-22, Method: Composition-based stats.
Identities = 75/195 (38%), Positives = 105/195 (53%), Gaps = 33/195 (16%)
Query: 346 VLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKV 405
V YN +K A P K Y FIIDEINRG++SKIFGEL I+ YRGE+ K+
Sbjct: 388 VFYNFCRK-AQSDPD--------KKYFFIIDEINRGNMSKIFGELLMLIENDYRGEKHKI 438
Query: 406 NTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN---- 461
Y + + F VPEN+YIIG MN DRS+ +D+A+RRRFS+ ++TP
Sbjct: 439 RLAYND---------EYFSVPENLYIIGMMNTADRSLAMIDYALRRRFSFFDMTPGFDSV 489
Query: 462 DTESMLDELSC--VEEAKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWK 519
+ ++L C + + ++ LN I + + LG + IG +YF N + D +W
Sbjct: 490 GFKKYQEDLDCEVFNKVIDAVKALNIEIAKDDSLGKGFCIGHSYFC----NRESIDNMWL 545
Query: 520 MN-----IEPLLREY 529
N I P+LREY
Sbjct: 546 ENVIEYDIAPMLREY 560
Score = 75.9 bits (185), Expect = 8e-12, Method: Composition-based stats.
Identities = 41/90 (45%), Positives = 56/90 (62%), Gaps = 5/90 (5%)
Query: 148 TRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDD--EMAFVQFHPSYDYTD 205
+ +Y K LL KN++L GAPG GKT+ A+ +A + +D ++ F+QFH +Y Y D
Sbjct: 310 SEEYTKLRSLLLAKKNIILQGAPGVGKTYSAKRLAYSIIGEEDRTKVEFIQFHQNYSYED 369
Query: 206 FVEGLRPVRDSDNFGFELRNGVFKDFCAKA 235
FV G +P D GFELR GVF +FC KA
Sbjct: 370 FVMGYKPKEDG---GFELRRGVFYNFCRKA 396
>gi|86130664|ref|ZP_01049264.1| putative endonuclease [Cellulophaga sp. MED134]
gi|85819339|gb|EAQ40498.1| putative endonuclease [Dokdonia donghaensis MED134]
Length = 936
Score = 110 bits (274), Expect = 4e-22, Method: Composition-based stats.
Identities = 130/466 (27%), Positives = 205/466 (43%), Gaps = 106/466 (22%)
Query: 151 YAKYIELLEQNKNLVLTGAPGTGKTF--MAQAIAKEMGCSDDEMA--------------- 193
+AK + + N + G PGTGKT+ +++A + G + D A
Sbjct: 489 FAKAKKTMVAPLNQLFYGPPGTGKTYRTISEAASIIQGQAIDNYATAKAIFQENLGERIE 548
Query: 194 FVQFHPSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
F+ FH +Y Y DF++GLRP + FE +G+FK KAL F R+ KE
Sbjct: 549 FITFHQNYSYEDFIQGLRPDVTNQALSFERTDGIFKKIATKALFEFY-------RVYKER 601
Query: 254 SVREILEDFIEEAIDEGTK--FKTSGTKNSFSIVENNERTITVEVPAN------------ 299
++ LE+ + K KT + SF + N T+ ++ +N
Sbjct: 602 ELQSSLEEPQILPFSDVYKAFLKTLKSGQSFETITGN--TVILDAISNNNLRFKHFEGGQ 659
Query: 300 ----EKTRLVKLSKA----------------------------ELIDLMDNNISVKSGKD 327
+ RL KL +A L +++ +++S +D
Sbjct: 660 SYVVSEKRLTKLYQAYDDIDKIININNDIRNAIGGSNSTVYYVALREIIAFKKTLESNQD 719
Query: 328 IQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSV----EVSKVDTKNYVFIIDEINRGDI 383
I H + + + Y Y +K+A K + VS D +YV IIDEINR +I
Sbjct: 720 I--HISNEDKIAELKYEEFDYEQ-QKEALKDIDLNLLKSVSSQDVPSYVIIIDEINRANI 776
Query: 384 SKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVE 443
S++FGEL I+P R G V + + P + F VP N++IIGTMN D+S+
Sbjct: 777 SRVFGELITLIEPDKRSH-GDVP------LTCTLPSGERFIVPSNLHIIGTMNTADKSIA 829
Query: 444 NMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEGLGSA-YMIGPA 502
+D A+RRRF ++ + P+ T +S V+ A + LNK E+ L + + +G +
Sbjct: 830 LLDIALRRRFEFIPMYPDST------ISGVQRA----DILNKINEQITHLKTRDFTVGHS 879
Query: 503 YFRKLGENGDDFDKLWKMN--IEPLLREYLRGFRKTNEIMNQLREA 546
YF GD+F +N + PLL EY E+ + L+EA
Sbjct: 880 YFM-----GDNFQLSSTINNKVIPLLLEYF--MNDEEEVKSILKEA 918
>gi|146796|gb|AAA24145.1| mcrB
gi|537188|gb|AAA97243.1| CG Site No. 4978; alternate gene name rglB [Escherichia coli]
Length = 465
Score = 109 bits (273), Expect = 5e-22, Method: Composition-based stats.
Identities = 76/199 (38%), Positives = 107/199 (53%), Gaps = 29/199 (14%)
Query: 346 VLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKV 405
+ YN + QA ++P K Y+FIIDEINR ++SK+FGE+ ++ RGE V
Sbjct: 264 IFYNFCQ-QAKEQPE--------KKYIFIIDEINRANLSKVFGEVMMLMEHDKRGENWSV 314
Query: 406 NTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTE 464
Y S+ ++ F+VPENVYIIG MN DRS+ +D+A+RRRFS++++ P DT
Sbjct: 315 PLTY------SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTP 368
Query: 465 SMLD-------ELSCVEEAKETMERLNKAI-EETEGLGSAYMIGPAYFRKLGENGDDFDK 516
+ E S VE + M LN+ I +E LG + IG +YF E+G D
Sbjct: 369 QFRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSPDT 428
Query: 517 LW-----KMNIEPLLREYL 530
W +I PLL EY
Sbjct: 429 QWLNEIVMTDIAPLLEEYF 447
Score = 63.2 bits (152), Expect = 5e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 147 PTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGC--SDDEMAFVQFHPSYDYT 204
P ++ L KN++L G PG GKTF+A+ +A + + + VQFH SY Y
Sbjct: 186 PETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 245
Query: 205 DFVEGLRPVRDSDNFGFELRNGVFKDFCAKA 235
DF++G RP + GF ++G+F +FC +A
Sbjct: 246 DFIQGYRP----NGVGFRRKDGIFYNFCQQA 272
>gi|89111055|ref|AP_004835.1| 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB
[Escherichia coli W3110]
gi|90111737|ref|NP_418766.4| 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB
[Escherichia coli K12]
gi|3915756|sp|P15005|MCRB_ECOLI 5-methylcytosine-specific restriction enzyme B (EcoKMcrBC)
gi|85677086|dbj|BAE78336.1| 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB
[Escherichia coli W3110]
gi|87082429|gb|AAC77302.2| 5-methylcytosine-specific restriction enzyme McrBC, subunit McrB
[Escherichia coli K12]
Length = 459
Score = 109 bits (272), Expect = 5e-22, Method: Composition-based stats.
Identities = 76/199 (38%), Positives = 107/199 (53%), Gaps = 29/199 (14%)
Query: 346 VLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKV 405
+ YN + QA ++P K Y+FIIDEINR ++SK+FGE+ ++ RGE V
Sbjct: 258 IFYNFCQ-QAKEQPE--------KKYIFIIDEINRANLSKVFGEVMMLMEHDKRGENWSV 308
Query: 406 NTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTE 464
Y S+ ++ F+VPENVYIIG MN DRS+ +D+A+RRRFS++++ P DT
Sbjct: 309 PLTY------SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTP 362
Query: 465 SMLD-------ELSCVEEAKETMERLNKAI-EETEGLGSAYMIGPAYFRKLGENGDDFDK 516
+ E S VE + M LN+ I +E LG + IG +YF E+G D
Sbjct: 363 QFRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSPDT 422
Query: 517 LW-----KMNIEPLLREYL 530
W +I PLL EY
Sbjct: 423 QWLNEIVMTDIAPLLEEYF 441
Score = 62.8 bits (151), Expect = 6e-08, Method: Composition-based stats.
Identities = 33/91 (36%), Positives = 51/91 (56%), Gaps = 6/91 (6%)
Query: 147 PTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGC--SDDEMAFVQFHPSYDYT 204
P ++ L KN++L G PG GKTF+A+ +A + + + VQFH SY Y
Sbjct: 180 PETTIETILKRLTIKKNIILQGPPGVGKTFVARRLAYLLTGEKAPQRVNMVQFHQSYSYE 239
Query: 205 DFVEGLRPVRDSDNFGFELRNGVFKDFCAKA 235
DF++G RP + GF ++G+F +FC +A
Sbjct: 240 DFIQGYRP----NGVGFRRKDGIFYNFCQQA 266
>gi|154507700|ref|ZP_02043342.1| hypothetical protein ACTODO_00181 [Actinomyces odontolyticus ATCC
17982]
gi|153797334|gb|EDN79754.1| hypothetical protein ACTODO_00181 [Actinomyces odontolyticus ATCC
17982]
Length = 472
Score = 109 bits (272), Expect = 7e-22, Method: Composition-based stats.
Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 18/172 (10%)
Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVP 426
+ +Y FIIDEINRG++SKIFGELF I+ RG + K+ Y ++ F VP
Sbjct: 290 EENDYFFIIDEINRGNLSKIFGELFMLIESDKRGPKNKLQLLYS---------RELFSVP 340
Query: 427 ENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAK-----ETM 480
NV+IIG MN DRS+ +D+A+RRRF++VE+ P D++ D S ++ + +
Sbjct: 341 ANVHIIGMMNTADRSLAMLDYALRRRFAFVELCPAFDSDGFRDYCSGLDNPRFEALVREV 400
Query: 481 ERLNKAIEETEGLGSAYMIGPAYFRKLG-ENGDDFDKLWKMNIE--PLLREY 529
E LN+ I E E LG + IG +YF + E D ++ E P+L+EY
Sbjct: 401 ESLNREIAEDESLGEGFCIGHSYFCNMKPETCTDASLALIVDYELIPMLKEY 452
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 44/100 (44%), Positives = 57/100 (57%), Gaps = 8/100 (8%)
Query: 138 YINSVRNAEPTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKE-MGCSD-DEMAFV 195
++N V +E +Y + LL+ KN++L GAPG GKT+ A+ +A MG D + V
Sbjct: 193 FLNEVYMSE--ERYDAIVGLLKTKKNIILQGAPGVGKTYAAKRLAYSMMGVKDVSRVKLV 250
Query: 196 QFHPSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKA 235
QFH SY Y DF+EG RP GFEL G F FC KA
Sbjct: 251 QFHQSYSYEDFIEGYRP----SGAGFELVKGAFYSFCKKA 286
>gi|146790|gb|AAA24142.1| mcrB protein
Length = 455
Score = 108 bits (271), Expect = 7e-22, Method: Composition-based stats.
Identities = 76/198 (38%), Positives = 107/198 (54%), Gaps = 29/198 (14%)
Query: 347 LYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVN 406
+YN + QA ++P K Y+FIIDEINR ++SK+FGE+ ++ RGE V
Sbjct: 255 IYNFCQ-QAKEQPE--------KKYIFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVP 305
Query: 407 TQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTES 465
Y S+ ++ F+VPENVYIIG MN DRS+ +D+A+RRRFS++++ P DT
Sbjct: 306 LTY------SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQ 359
Query: 466 MLD-------ELSCVEEAKETMERLNKAI-EETEGLGSAYMIGPAYFRKLGENGDDFDKL 517
+ E S VE + M LN+ I +E LG + IG +YF E+G D
Sbjct: 360 FRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSPDTQ 419
Query: 518 W-----KMNIEPLLREYL 530
W +I PLL EY
Sbjct: 420 WLNEIVMTDIAPLLEEYF 437
>gi|86149519|ref|ZP_01067749.1| 5-methylcytosine-specific restriction enzyme B [Campylobacter
jejuni subsp. jejuni CF93-6]
gi|85839787|gb|EAQ57046.1| 5-methylcytosine-specific restriction enzyme B [Campylobacter
jejuni subsp. jejuni CF93-6]
Length = 452
Score = 108 bits (270), Expect = 9e-22, Method: Composition-based stats.
Identities = 89/280 (31%), Positives = 139/280 (49%), Gaps = 43/280 (15%)
Query: 191 EMAFVQFHPSYDYTDFVEGLRPVRDSD---NFGFELRNGVFKDFCAKALQNFKDSEKPIE 247
++ F FH SY Y +FVEG++P +SD +++++G+FK+ C KAL+N D E
Sbjct: 23 QIVFTTFHQSYGYEEFVEGIKPSLNSDENSQINYKVKDGIFKELCKKALENRDDIE---- 78
Query: 248 RLQKEGSVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITV---EVPANEKTRL 304
+ ++ E E+A + F+ TK +SI +T + ++ N K
Sbjct: 79 --SFNFYINDLKEKTKEDANNPEKYFQLPNTK--YSIQYRGGKTFRIKFDDMSKNHKDYP 134
Query: 305 VKLSKAELIDLMDNNISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVS 364
V + E + N + + +Y+ + N +K Q K +
Sbjct: 135 VSIDNIEKLYKTSNIDEIYN----------------SAYVKAILNYLKSQGLKDYKEKDE 178
Query: 365 KVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR---GERGKVNTQYQNIIEDSDPFKD 421
K++ Y+ IIDEINRG++SKIFGEL I+P R E ++ Y +
Sbjct: 179 KINLP-YIIIIDEINRGNVSKIFGELITLIEPSKRLGNEEALELTLAYSG---------E 228
Query: 422 GFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN 461
F VP+NVYIIGTMN DRS+ ++D A+RRRF +VE+ PN
Sbjct: 229 KFGVPKNVYIIGTMNTADRSITSLDTALRRRFEFVEMMPN 268
>gi|146791|gb|AAA24143.1| 33kD protein (put.); putative
Length = 294
Score = 108 bits (270), Expect = 1e-21, Method: Composition-based stats.
Identities = 76/198 (38%), Positives = 107/198 (54%), Gaps = 29/198 (14%)
Query: 347 LYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVN 406
+YN + QA ++P K Y+FIIDEINR ++SK+FGE+ ++ RGE V
Sbjct: 94 IYNFCQ-QAKEQPE--------KKYIFIIDEINRANLSKVFGEVMMLMEHDKRGENWSVP 144
Query: 407 TQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTES 465
Y S+ ++ F+VPENVYIIG MN DRS+ +D+A+RRRFS++++ P DT
Sbjct: 145 LTY------SENDEERFYVPENVYIIGLMNTADRSLAVVDYALRRRFSFIDIEPGFDTPQ 198
Query: 466 MLD-------ELSCVEEAKETMERLNKAI-EETEGLGSAYMIGPAYFRKLGENGDDFDKL 517
+ E S VE + M LN+ I +E LG + IG +YF E+G D
Sbjct: 199 FRNFLLNKKAEPSFVESLCQKMNELNQEISKEATILGKGFRIGHSYFCCGLEDGTSPDTQ 258
Query: 518 W-----KMNIEPLLREYL 530
W +I PLL EY
Sbjct: 259 WLNEIVMTDIAPLLEEYF 276
>gi|116669427|ref|YP_830360.1| ATPase associated with various cellular activities, AAA_5
[Arthrobacter sp. FB24]
gi|116609536|gb|ABK02260.1| ATPase associated with various cellular activities, AAA_5
[Arthrobacter sp. FB24]
Length = 743
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 85/266 (31%), Positives = 132/266 (49%), Gaps = 38/266 (14%)
Query: 284 IVENNERTITVEVPANEKTRLVKLSKAELI-DLMDNNISVKSGKDIQAH--FHRKHRTQQ 340
++E N + + P KT L K A+L D D + + A+ F R +
Sbjct: 476 LLEENRQLVLYGPPGTGKTYLAKHLAAQLAGDSTDERVKLVQFHPSYAYEDFFEGFRPDK 535
Query: 341 DSYIFVLYNIIK------KQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAI 394
V + ++ + A KP E K Y IIDE+NR +++K+FGEL+F +
Sbjct: 536 TDEGQVSFKLVAGPLRRLAEEAAKPGNE-----NKPYFLIIDEMNRANLAKVFGELYFLL 590
Query: 395 DPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFS 454
+ YR +R + QY ++PF +P+N+YIIGTMN DRS+ MD A+RRRFS
Sbjct: 591 E--YRDDR--IYLQYS----PNEPFT----LPDNLYIIGTMNTADRSIAMMDAAIRRRFS 638
Query: 455 WVEVTPNDTESMLDELSCVEEAKE-------TMERLNKAIEETEGLGSAYMIGPAYF-RK 506
++E+ P TE + L +A+ ++ LN AI+E + MIGP+YF +K
Sbjct: 639 FIELHPK-TEPVKGSLLRFLQARNLDTTPALLLDALNDAIDEWD---RDLMIGPSYFMKK 694
Query: 507 LGENGDDFDKLWKMNIEPLLREYLRG 532
+ ++WK + PLL E+ G
Sbjct: 695 AAQTPAGLRRIWKYELMPLLEEHYHG 720
Score = 76.6 bits (187), Expect = 5e-12, Method: Composition-based stats.
Identities = 40/93 (43%), Positives = 57/93 (61%), Gaps = 6/93 (6%)
Query: 146 EPTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMG--CSDDEMAFVQFHPSYDY 203
EP ++ A ELLE+N+ LVL G PGTGKT++A+ +A ++ +D+ + VQFHPSY Y
Sbjct: 468 EPLQEIA---ELLEENRQLVLYGPPGTGKTYLAKHLAAQLAGDSTDERVKLVQFHPSYAY 524
Query: 204 TDFVEGLRPVR-DSDNFGFELRNGVFKDFCAKA 235
DF EG RP + D F+L G + +A
Sbjct: 525 EDFFEGFRPDKTDEGQVSFKLVAGPLRRLAEEA 557
>gi|125621518|gb|EAZ49851.1| sensor histidine kinase [Vibrio cholerae V51]
Length = 688
Score = 107 bits (266), Expect = 3e-21, Method: Composition-based stats.
Identities = 126/465 (27%), Positives = 185/465 (39%), Gaps = 123/465 (26%)
Query: 163 NLVLTGAPGTGKTFMAQAIA-------------KEMGCSDDEMA------FVQFHPSYDY 203
N +L G PGTGKT+ A +E+ D + FV FH S+ Y
Sbjct: 171 NQILYGPPGTGKTYHTIEAAVKAAEPTYSWENREELKSKYDALVDAKRIRFVTFHQSFGY 230
Query: 204 TDFVEGLRPVRDSD-NFGFELRNGVFKDFCAKALQNFKDSEKPIE------RLQKEGSVR 256
DFVEGL D + +++GVFK C A + ++ IE +L EG+ +
Sbjct: 231 EDFVEGLVAETTEDKQVAYRIKDGVFKKICDDAAVSEMHADPAIETNGRVWKLSIEGAHQ 290
Query: 257 EILEDFIEE----AIDEGTK-----------FKTSGTKNSFSI---------------VE 286
+ + E AI G FK+ GT N S+ ++
Sbjct: 291 NATKTYCLENNLGAIGWGDTGDLSKDARNEYFKSQGTNNQNSLMYFCHEMAIGDLVLCID 350
Query: 287 NNERTITVEVPANE--------KTR-----------LVKLSKAELIDLMDNN-------- 319
+ V V E TR L K + L DN
Sbjct: 351 SKTSVEAVGVVTGEYRYAEEGLPTRDDYCHQLPIKWLAKGFSVDFKSLNDNKQFSLPTCY 410
Query: 320 -ISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEI 378
+S S D+ +H H Q + P+ V+ +N+V +IDEI
Sbjct: 411 PLSRLSVGDVLSHLQSHH----------------VQVGETPAASVT-AQKQNFVLVIDEI 453
Query: 379 NRGDISKIFGELFFAIDPGYRG---ERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTM 435
NRG+ISKIFGEL I+ RG E + Y N PF VP+N+YIIGTM
Sbjct: 454 NRGNISKIFGELITLIEDSKRGGAEEAVSLTLPYSN-----KPFS----VPDNLYIIGTM 504
Query: 436 NDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNKAIEETEG 492
N DRS+ MD A+RRRF +VE+ PN + +++ + K ER+ +
Sbjct: 505 NTADRSLAMMDTALRRRFDFVEMMPNPSLLHGAVVKGIHLETLLKTLNERIEILYDREHT 564
Query: 493 LGSAYMIGPAYFRKLGENGDDFDK-------LWKMNIEPLLREYL 530
LG A+ + F + + D+ +++ + PLL+EY
Sbjct: 565 LGHAFFMPVKAFLDADDEHEQEDRAFAKLVSVFQNKVIPLLQEYF 609
>gi|116220782|ref|ZP_01486205.1| hypothetical protein VchoV5_02001207 [Vibrio cholerae V51]
Length = 638
Score = 106 bits (265), Expect = 3e-21, Method: Composition-based stats.
Identities = 126/465 (27%), Positives = 185/465 (39%), Gaps = 123/465 (26%)
Query: 163 NLVLTGAPGTGKTFMAQAIA-------------KEMGCSDDEMA------FVQFHPSYDY 203
N +L G PGTGKT+ A +E+ D + FV FH S+ Y
Sbjct: 121 NQILYGPPGTGKTYHTIEAAVKAAEPTYSWENREELKSKYDALVDAKRIRFVTFHQSFGY 180
Query: 204 TDFVEGLRPVRDSD-NFGFELRNGVFKDFCAKALQNFKDSEKPIE------RLQKEGSVR 256
DFVEGL D + +++GVFK C A + ++ IE +L EG+ +
Sbjct: 181 EDFVEGLVAETTEDKQVAYRIKDGVFKKICDDAAVSEMHADPAIETNGRVWKLSIEGAHQ 240
Query: 257 EILEDFIEE----AIDEGTK-----------FKTSGTKNSFSI---------------VE 286
+ + E AI G FK+ GT N S+ ++
Sbjct: 241 NATKTYCLENNLGAIGWGDTGDLSKDARNEYFKSQGTNNQNSLMYFCHEMAIGDLVLCID 300
Query: 287 NNERTITVEVPANE--------KTR-----------LVKLSKAELIDLMDNN-------- 319
+ V V E TR L K + L DN
Sbjct: 301 SKTSVEAVGVVTGEYRYAEEGLPTRDDYCHQLPIKWLAKGFSVDFKSLNDNKQFSLPTCY 360
Query: 320 -ISVKSGKDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEI 378
+S S D+ +H H Q + P+ V+ +N+V +IDEI
Sbjct: 361 PLSRLSVGDVLSHLQSHH----------------VQVGETPAASVT-AQKQNFVLVIDEI 403
Query: 379 NRGDISKIFGELFFAIDPGYRG---ERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTM 435
NRG+ISKIFGEL I+ RG E + Y N PF VP+N+YIIGTM
Sbjct: 404 NRGNISKIFGELITLIEDSKRGGAEEAVSLTLPYSN-----KPFS----VPDNLYIIGTM 454
Query: 436 NDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNKAIEETEG 492
N DRS+ MD A+RRRF +VE+ PN + +++ + K ER+ +
Sbjct: 455 NTADRSLAMMDTALRRRFDFVEMMPNPSLLHGAVVKGIHLETLLKTLNERIEILYDREHT 514
Query: 493 LGSAYMIGPAYFRKLGENGDDFDK-------LWKMNIEPLLREYL 530
LG A+ + F + + D+ +++ + PLL+EY
Sbjct: 515 LGHAFFMPVKAFLDADDEHEQEDRAFAKLVSVFQNKVIPLLQEYF 559
>gi|86741527|ref|YP_481927.1| AAA_5 ATPase associated with various cellular activities [Frankia
sp. CcI3]
gi|86568389|gb|ABD12198.1| AAA_5 ATPase associated with various cellular activities [Frankia
sp. CcI3]
Length = 741
Score = 106 bits (265), Expect = 4e-21, Method: Composition-based stats.
Identities = 65/170 (38%), Positives = 101/170 (59%), Gaps = 23/170 (13%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
+ IIDEINRGD+++IFGEL+F ++ YRGE V TQY + D+ F+ +P+N++
Sbjct: 542 FFLIIDEINRGDLARIFGELYFLLE--YRGE--AVTTQYAS--ADTRDFQ----LPKNLF 591
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPN--DTESMLDELSCV----EEAKETMERLN 484
IIGTMN DRS+ D A+RRRF++V + P+ T S+L +EA + LN
Sbjct: 592 IIGTMNSADRSIAAFDQALRRRFTFVGLHPDVEPTASVLRRWLAAGDLPDEAARLLGELN 651
Query: 485 KAIEETEGLGSAYMIGPAYFR--KLGENGDDFDKLWKMNIEPLLREYLRG 532
+ I++ + IGP+Y ++ ++ D D++W+ I PLL E+ G
Sbjct: 652 RRIDDPDA-----RIGPSYLMRDRVHQSADGLDRVWEHQILPLLAEHHVG 696
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 35/96 (36%), Positives = 50/96 (52%), Gaps = 14/96 (14%)
Query: 155 IELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDE---MAFVQFHPSYDYTDFVEGLR 211
+ELL L+ G PGTGKT++A+ +A + +DD + VQFHPSY Y DF +G R
Sbjct: 444 VELLRDRPQLIFYGPPGTGKTYLARRLAWHL--ADDRRENVTLVQFHPSYMYEDFFQGFR 501
Query: 212 PVR---------DSDNFGFELRNGVFKDFCAKALQN 238
PV+ ++ FEL +G + A N
Sbjct: 502 PVQVKGGDGDAATTNRMSFELVDGPLRRLATAAELN 537
>gi|153000505|ref|YP_001366186.1| GTPase subunit of restriction endonuclease-like protein [Shewanella
baltica OS185]
gi|151365123|gb|ABS08123.1| GTPase subunit of restriction endonuclease-like protein [Shewanella
baltica OS185]
Length = 605
Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 102/343 (29%), Positives = 147/343 (42%), Gaps = 78/343 (22%)
Query: 157 LLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDE------------------------M 192
+L N +L G PGTGKT+ I K + D E +
Sbjct: 164 MLNSPLNQILYGPPGTGKTY--NTINKSLSIVDPEYLSEYGHDRTKVKDRFDELVIENRI 221
Query: 193 AFVQFHPSYDYTDFVEGLRPVRDSDNFGFELRNGVFKDFCAKA------LQNFKDSEKPI 246
FV FH S+ Y DFVEGL+ D+ + + GVFK FC +A + + E +
Sbjct: 222 GFVTFHQSFSYEDFVEGLKANSDNGLLSYSVEPGVFKIFCDRASSSNSQVISVDAFENAV 281
Query: 247 ERLQKEGSVREILEDFIEEAIDEGTKFKTS-GTKNSFSIVENNERTIT---VEVPANEKT 302
+LQ++ E ED IE G F+ +F I ++ + V AN +
Sbjct: 282 LQLQEK---YEEAEDRIEMETIRGKTFEIEYAGGATFKIFPHSTESTDPKYVASIANVRK 338
Query: 303 RLVKLSKAELIDLMDNNISVKSG--KDIQAHFHRKHRTQQDSYIFVLYNIIKKQAAKKPS 360
+ SK + N S G ++ HF K + +++ ++ +P
Sbjct: 339 LYLTGSKKGIY-----NTSYVEGFLVYLKKHFGLKE---------YVADVVNHESTSQP- 383
Query: 361 VEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRG---ERGKVNTQYQNIIEDSD 417
+V IIDEINRG+IS IFGEL I+P R E V Y
Sbjct: 384 ----------FVLIIDEINRGNISNIFGELITLIEPSKRAGGAEALSVKLPYS------- 426
Query: 418 PFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTP 460
K+ F VP N+YIIGTMN D+S+ +D A+RRRF + E+ P
Sbjct: 427 --KESFSVPSNLYIIGTMNTADKSLAQVDIALRRRFEFTEMMP 467
>gi|119962222|ref|YP_946857.1| hypothetical protein AAur_1069 [Arthrobacter aurescens TC1]
gi|119949081|gb|ABM07992.1| hypothetical protein AAur_1069 [Arthrobacter aurescens TC1]
Length = 718
Score = 105 bits (263), Expect = 6e-21, Method: Composition-based stats.
Identities = 83/262 (31%), Positives = 135/262 (51%), Gaps = 30/262 (11%)
Query: 284 IVENNERTITVEVPANEKTRLVKLSKAELI-DLMDNNISVKSGKDIQAH--FHRKHRTQQ 340
++E N + + P KT L K AEL D D + + A+ F +R +
Sbjct: 451 LLEENRQLVLYGPPGTGKTYLAKHLAAELAGDHTDERVKLVQFHPSYAYEDFFEGYRPDK 510
Query: 341 DSYIFVLYNIIKKQAAKKPSVEVSKVDT--KNYVFIIDEINRGDISKIFGELFFAIDPGY 398
V + ++ ++ + E +K + K Y IIDE+NR +++K+FGEL+F ++ Y
Sbjct: 511 TDDGQVSFKLVAG-PLRRLAEEAAKPENAHKPYFLIIDEMNRANLAKVFGELYFLLE--Y 567
Query: 399 RGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEV 458
R +R + QY ++PF +P+N+YIIGTMN DRS+ MD A+RRRF+++E+
Sbjct: 568 RDDR--IYLQYS----PNEPFS----LPDNLYIIGTMNTADRSIAMMDAAIRRRFAFIEL 617
Query: 459 TPNDTESMLDELSCVEEAK-------ETMERLNKAIEETEGLGSAYMIGPAYFRK-LGEN 510
P + E + L EA+ + ++ LN AI++ + MIGP+YF K N
Sbjct: 618 HPKE-EPIRGTLRRYLEARGLDTLNADLLDALNDAIDDWD---RDLMIGPSYFMKNAARN 673
Query: 511 GDDFDKLWKMNIEPLLREYLRG 532
++WK + PLL E+ G
Sbjct: 674 PTGLRRIWKYELMPLLEEHYHG 695
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 43/103 (41%), Positives = 63/103 (61%), Gaps = 7/103 (6%)
Query: 146 EPTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGC--SDDEMAFVQFHPSYDY 203
EP ++ A ELLE+N+ LVL G PGTGKT++A+ +A E+ +D+ + VQFHPSY Y
Sbjct: 443 EPLKEIA---ELLEENRQLVLYGPPGTGKTYLAKHLAAELAGDHTDERVKLVQFHPSYAY 499
Query: 204 TDFVEGLRPVRDSD-NFGFELRNGVFKDFCAKALQNFKDSEKP 245
DF EG RP + D F+L G + +A + +++ KP
Sbjct: 500 EDFFEGYRPDKTDDGQVSFKLVAGPLRRLAEEAAKP-ENAHKP 541
>gi|150401934|ref|YP_001329228.1| hypothetical protein MmarC7_0004 [Methanococcus maripaludis C7]
gi|150032964|gb|ABR65077.1| hypothetical protein MmarC7_0004 [Methanococcus maripaludis C7]
Length = 845
Score = 103 bits (256), Expect = 4e-20, Method: Composition-based stats.
Identities = 103/334 (30%), Positives = 157/334 (47%), Gaps = 26/334 (7%)
Query: 242 SEKPIERLQKEGSVREILEDFIEEAID---EGTKFKTSGTKNSFSIVENNERTITVEVPA 298
S+ I +L KE + E L+D I D +F TK + N TI +++
Sbjct: 471 SQMSIYKLSKEDLLIENLKDLISNNSDVENNKPRFDEVFTKLIGNTDFENGETIRIDMKN 530
Query: 299 NEKTRLVKLSKAELIDLMDNNISVKSGKDIQAHFHRKHRTQQDSYIF-----VLYNIIKK 353
L+K + I N+S + I R + T +++ I YN +
Sbjct: 531 PNSHYLIKKVNEKTIFYDKGNVSGEYNLSINT-LKRMYDTGENNIITGGGLESYYNGLLT 589
Query: 354 QAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNI 412
+ K K D KNYV IIDEINRG+ISKIFGEL I+ R G + ++ T
Sbjct: 590 RINKIAEQLSVKTDEKNYVLIIDEINRGNISKIFGELITLIEDDKRLGTKNQITTTL--- 646
Query: 413 IEDSDPF-KDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELS 471
P+ KD F VP+N+Y++GTMN DRS+ MD A+RRRF + E+ P D E + +
Sbjct: 647 -----PYSKDTFGVPKNLYLLGTMNTADRSIALMDTALRRRFHFEELMP-DPELLNGIIV 700
Query: 472 CVEEAKETMERLNKAIE----ETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLR 527
K+ +E+LN+ +E +G AY + Y E +++K I PLL+
Sbjct: 701 KGINLKQMLEKLNERVEFLYDRDHEIGHAYFLPLKYIENEEEQFKKLCQIFKNKIIPLLQ 760
Query: 528 EYLRGFRKTNEIM--NQLREAYVGEKEEEHSNIP 559
EY + +I+ + R+ E+ E + +IP
Sbjct: 761 EYFYDNYEKIQIVLGDHFRQLNRMEETENYEDIP 794
>gi|149173165|ref|ZP_01851796.1| ATPase associated with various cellular activities, AAA_5
[Planctomyces maris DSM 8797]
gi|148847971|gb|EDL62303.1| ATPase associated with various cellular activities, AAA_5
[Planctomyces maris DSM 8797]
Length = 267
Score = 100 bits (249), Expect = 3e-19, Method: Composition-based stats.
Identities = 66/181 (36%), Positives = 99/181 (54%), Gaps = 29/181 (16%)
Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVP 426
+++NYVFIIDEINRG++SKIFGEL I+ RG + Y + + FF+P
Sbjct: 81 ESENYVFIIDEINRGNLSKIFGELLMLIEADKRGSEFSIPLTY------AKDQSERFFIP 134
Query: 427 ENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTP-------------NDTESMLDELSCV 473
+N++IIG MN DRS+ +D+A+RRRF+++++ P N+ ES + +L
Sbjct: 135 QNLHIIGMMNTADRSLSMVDYALRRRFTFIDLQPEFETASFRHFMEKNEVESQIIDLLV- 193
Query: 474 EEAKETMERLNKAIE-ETEGLGSAYMIGPAYFRKLG---ENGDD-FDKLWKMNIEPLLRE 528
M +LN I E LG + +G ++F G E G D + + + I PLLRE
Sbjct: 194 ----NRMHQLNGKIRAEKTNLGPGFEVGHSFFCPQGTEDELGMDWYRSIIRTEIAPLLRE 249
Query: 529 Y 529
Y
Sbjct: 250 Y 250
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 33/80 (41%), Positives = 50/80 (62%), Gaps = 5/80 (6%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDE--MAFVQFHPSYDYTDFVEGLRPVRD 215
+ + KN++L G PG GKT++A+ +A + DE + VQFH SY Y DF++G RP
Sbjct: 1 MARKKNVILQGPPGVGKTYIAKRLAYSLLGYKDESKVEMVQFHQSYSYEDFIQGYRP--- 57
Query: 216 SDNFGFELRNGVFKDFCAKA 235
+ GF+ ++G+F FC KA
Sbjct: 58 KETGGFQRQDGIFHQFCGKA 77
>gi|81096279|ref|ZP_00874626.1| ATPas [Streptococcus suis 89/1591]
gi|80977623|gb|EAP41159.1| ATPas [Streptococcus suis 89/1591]
Length = 565
Score = 98.2 bits (243), Expect = 1e-18, Method: Composition-based stats.
Identities = 65/171 (38%), Positives = 97/171 (56%), Gaps = 20/171 (11%)
Query: 368 TKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPE 427
+ +Y FIIDEINRG++SKIFGELF I+ RG+ Q + D + F +PE
Sbjct: 386 SHDYFFIIDEINRGNLSKIFGELFMLIENDKRGK------SLQLLYSD-----EQFSIPE 434
Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAK-----ETME 481
N+YIIG MN DRS+ +D+A+RRRF++ ++ P T D + ++ K +E
Sbjct: 435 NLYIIGMMNTADRSLALLDYALRRRFAFFDIKPGFSTAGFKDYQTNLKNEKFDRLISCIE 494
Query: 482 RLNKAIEETEGLGSAYMIGPAYFRKLGENGDD---FDKLWKMNIEPLLREY 529
+LN+AI E LG ++ IG +YF L D + + + + PLL+EY
Sbjct: 495 KLNQAISTEEVLGDSFCIGHSYFCGLSAEVLDQGLLEAIVEYELIPLLKEY 545
Score = 72.8 bits (177), Expect = 5e-11, Method: Composition-based stats.
Identities = 53/149 (35%), Positives = 77/149 (51%), Gaps = 25/149 (16%)
Query: 150 KYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIA-KEMGCSDDEMAF-VQFHPSYDYTDFV 207
+Y + +L+ KN++L GAPG GKTF+A+ +A MG D E +QFH SY Y DF+
Sbjct: 298 EYDQLTSILQMKKNIILQGAPGVGKTFVAERLAFSLMGKPDLERVMTIQFHQSYSYEDFI 357
Query: 208 EGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEGSVREILEDFIEEAI 267
G RP GFELR G F FC KA +S+K + FI + I
Sbjct: 358 MGFRP----STSGFELRRGAFYTFCKKA-----ESDKSHDYF------------FIIDEI 396
Query: 268 DEGTKFKTSGTKNSFSIVENNERTITVEV 296
+ G K G F ++EN++R ++++
Sbjct: 397 NRGNLSKIFG--ELFMLIENDKRGKSLQL 423
>gi|83645100|ref|YP_433535.1| GTPase subunit of restriction endonuclease [Hahella chejuensis KCTC
2396]
gi|83633143|gb|ABC29110.1| GTPase subunit of restriction endonuclease [Hahella chejuensis KCTC
2396]
Length = 777
Score = 97.8 bits (242), Expect = 2e-18, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 99/174 (56%), Gaps = 17/174 (9%)
Query: 364 SKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGF 423
S+ +NYV IIDEINRG+IS+IFGEL ++P R +G + + + +P
Sbjct: 541 SRAKKRNYVLIIDEINRGNISRIFGELITLLEPDKR--KGGEDERSVTLPYSKEPIT--- 595
Query: 424 FVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVE-EAKETMER 482
VP+N+Y++GTMN D+S+ +D A+RRRF +VE+ P +L +S + + E ++
Sbjct: 596 -VPDNLYVLGTMNTADKSLAQLDLALRRRFEFVELMPQ--PELLTGISVHDVDMGELLDV 652
Query: 483 LNKAIEETEGLGSAYMIGPAYFRKLGE-NGDD-----FDKLWKMNIEPLLREYL 530
+N+ IE L +M+G AYF L + N DD ++ I PLL+EY
Sbjct: 653 MNQRIEAL--LDRDHMLGHAYFWPLRDANSDDERESLLADIFARRIVPLLQEYF 704
>gi|146318514|ref|YP_001198226.1| GTPase subunit of restriction endonuclease [Streptococcus suis
05ZYH33]
gi|145689320|gb|ABP89826.1| GTPase subunit of restriction endonuclease [Streptococcus suis
05ZYH33]
Length = 569
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 67/172 (38%), Positives = 98/172 (56%), Gaps = 22/172 (12%)
Query: 368 TKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPE 427
+ NY FIIDEINRG++SKIFGELF I+ RG+ Q + D + F +PE
Sbjct: 390 SHNYFFIIDEINRGNLSKIFGELFMLIENDKRGK------SLQLLYSD-----EQFSIPE 438
Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAK-----ETME 481
N+YIIG MN DRS+ +D+A+RRRF++ ++ P T D + ++ K +E
Sbjct: 439 NLYIIGMMNTADRSLALLDYALRRRFAFFDIKPGFSTTGFKDYQANLKNEKFDRLISCVE 498
Query: 482 RLNKAIEETEGLGSAYMIGPAYFRKLG----ENGDDFDKLWKMNIEPLLREY 529
+LN+AI E LG ++ IG +YF L E G + + + + PLL+EY
Sbjct: 499 KLNQAISTEEVLGDSFCIGHSYFCGLSAEVLEQG-LLEAIVEYELIPLLKEY 549
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 41/88 (46%), Positives = 52/88 (59%), Gaps = 6/88 (6%)
Query: 150 KYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIA-KEMGCSDDEMAF-VQFHPSYDYTDFV 207
+Y + +L+ KN++L GAPG GKTF+A+ +A MG D E +QFH SY Y DF+
Sbjct: 302 EYDQLTSILQMKKNIILQGAPGVGKTFIAERLAFSLMGKPDLERVMTIQFHQSYSYEDFI 361
Query: 208 EGLRPVRDSDNFGFELRNGVFKDFCAKA 235
G RP GFELR G F FC KA
Sbjct: 362 MGFRP----STSGFELRRGAFYTFCKKA 385
>gi|57640730|ref|YP_183208.1| putative 5-methylcytosine restriction system, GTPase subunit
[Thermococcus kodakarensis KOD1]
gi|57159054|dbj|BAD84984.1| putative 5-methylcytosine restriction system, GTPase subunit
[Thermococcus kodakarensis KOD1]
Length = 700
Score = 97.4 bits (241), Expect = 2e-18, Method: Composition-based stats.
Identities = 64/168 (38%), Positives = 92/168 (54%), Gaps = 16/168 (9%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KDGFFVPENV 429
+ IIDEINRG+IS+I GE+ +DP R + +Y+ I + P+ ++ F +P N+
Sbjct: 503 FYLIIDEINRGNISRILGEVITLLDPDKR-----LGMEYETKI--TLPYSREPFALPPNL 555
Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEE 489
YIIGTMN DRS+ +D A+RRRF+++E+ P E E+ V + + LN+ IEE
Sbjct: 556 YIIGTMNSTDRSIAFLDMALRRRFAFLEILPRPEELGDIEVGGV-NLQHLLSTLNRVIEE 614
Query: 490 TEGLGSAYMIGPAYFR-----KLGENGDDFDKLWKMNIEPLLREYLRG 532
G Y IG YFR K E ++ I PLL+EY G
Sbjct: 615 ER--GKDYTIGHGYFREVIKAKPEERAKALKDVFYYKILPLLQEYFYG 660
Score = 58.9 bits (141), Expect = 9e-07, Method: Composition-based stats.
Identities = 34/112 (30%), Positives = 60/112 (53%), Gaps = 5/112 (4%)
Query: 150 KYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEMAFVQFHPSYDYTDFVEG 209
++ + E+L + ++L G PGTGKT +A ++++ D++ V FH SY Y DFVEG
Sbjct: 384 QFTQLEEVLRRFGGVILYGPPGTGKTKLALDLSRDA----DKVEVVTFHQSYSYEDFVEG 439
Query: 210 LRPVRDSDNFGFELRNGVFKDFCAKAL-QNFKDSEKPIERLQKEGSVREILE 260
RPV + + +G+ K +A+ + E + +K+ +V E L+
Sbjct: 440 FRPVEKEGKLLYVVEDGILKRLAVEAIFRGLHPDEGEADYKKKKEAVLEYLQ 491
>gi|28868859|ref|NP_791478.1| hypothetical protein PSPTO_1653 [Pseudomonas syringae pv. tomato
str. DC3000]
gi|28852098|gb|AAO55173.1| conserved domain protein [Pseudomonas syringae pv. tomato str.
DC3000]
Length = 517
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 64/180 (35%), Positives = 103/180 (57%), Gaps = 16/180 (8%)
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KDGFFVPENVY 430
V IIDEINRG++S+IFGEL I+P R + +E + P+ K+ F +P N++
Sbjct: 219 VLIIDEINRGNVSRIFGELITLIEPSKRAGADEA-------LEVTLPYSKERFSIPGNIH 271
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEA-KETMERLNKAIEE 489
+IGTMN DRS+ +D A+RRRF+++EV PN +LDE+ A E + +N+ I
Sbjct: 272 LIGTMNTADRSLAALDIALRRRFTFIEVPPN--PELLDEVEVDGIAIDELLSLMNQRIAA 329
Query: 490 TEGLGSAYMIGPAYFRKLGENG--DDFDKLWKMNIEPLLREY-LRGFRKTNEIMNQLREA 546
L + +G AYF L + + + +++ I PLL+EY +++ ++N R+A
Sbjct: 330 L--LDRDHCLGHAYFMPLKDEPTLERLEGIFREQILPLLQEYFFEDWQRIQWVLNDQRKA 387
>gi|124519812|ref|ZP_01695282.1| ATPase associated with various cellular activities, AAA_5 [Bacillus
coagulans 36D1]
gi|124497909|gb|EAY45460.1| ATPase associated with various cellular activities, AAA_5 [Bacillus
coagulans 36D1]
Length = 804
Score = 96.7 bits (239), Expect = 3e-18, Method: Composition-based stats.
Identities = 65/167 (38%), Positives = 91/167 (54%), Gaps = 20/167 (11%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
+ FIIDEINRG++SKIFGEL I+ YRG K Y + PF VP+N+Y
Sbjct: 627 FFFIIDEINRGNMSKIFGELLMLIEKDYRGT--KATLAYNGL-----PFT----VPKNLY 675
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTP-------NDTESMLDELSCVEEAKETMERL 483
+IG MN DRS+ +D+A+RRRFS+ E+ P +S LD E ++ L
Sbjct: 676 LIGMMNTADRSLAMIDYALRRRFSFFEIEPGFHSAGFQSYQSALDH-DTFNTLIERIKEL 734
Query: 484 NKAIEETEGLGSAYMIGPAYFRKLGENGDDFDK-LWKMNIEPLLREY 529
N+ I LG + IG +YF E D++ K + + +I P+L EY
Sbjct: 735 NQEIAADSSLGPGFRIGHSYFCGQAECTDEWLKEVVEFDILPMLHEY 781
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/88 (44%), Positives = 53/88 (60%), Gaps = 6/88 (6%)
Query: 150 KYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKE-MGCSDD-EMAFVQFHPSYDYTDFV 207
+Y LL+ KNL+L GAPG GKTF A+ +A MG DD + +QFH +Y Y DF+
Sbjct: 536 RYETLTSLLKHKKNLILQGAPGVGKTFTAKRLAYAMMGLKDDSRIELIQFHQNYSYEDFM 595
Query: 208 EGLRPVRDSDNFGFELRNGVFKDFCAKA 235
G +P + GF+L+ G+F FC KA
Sbjct: 596 MGYKPKEE----GFQLQYGIFYKFCQKA 619
>gi|94970780|ref|YP_592828.1| ATPase associated with various cellular activities, AAA_5
[Acidobacteria bacterium Ellin345]
gi|94552830|gb|ABF42754.1| ATPase associated with various cellular activities, AAA_5
[Acidobacteria bacterium Ellin345]
Length = 805
Score = 96.7 bits (239), Expect = 4e-18, Method: Composition-based stats.
Identities = 66/194 (34%), Positives = 99/194 (51%), Gaps = 23/194 (11%)
Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVP 426
D + ++FIIDEINRG++SKI GE+ I+P RG + Y +++ FFVP
Sbjct: 620 DKRPFIFIIDEINRGNLSKILGEVMMLIEPDKRGPEFAIPLAYSGSADET------FFVP 673
Query: 427 ENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETM-----E 481
NV++IG MN DRS+ +D+A+RRRF ++ + P AK+ +
Sbjct: 674 SNVFVIGLMNTADRSLAMVDYALRRRFRFIGLKPEFKSERFSGFLLQAGAKQPLIKKIVS 733
Query: 482 RLNKAIEETEG----LGSAYMIGPAYFRKLGENGDDFDKLW-----KMNIEPLLREY-LR 531
RL+ +E G LG Y IG ++F + +G D++W I+PLL EY L
Sbjct: 734 RLSTLNDEISGDEKNLGPGYRIGHSFFCPM--DGRAPDEVWYRAVINSEIKPLLDEYWLD 791
Query: 532 GFRKTNEIMNQLRE 545
K N ++ L E
Sbjct: 792 DEDKVNSLIAALTE 805
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 40/85 (47%), Positives = 55/85 (64%), Gaps = 9/85 (10%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIA----KEMGCSDDEMAFVQFHPSYDYTDFVEGLRPV 213
L+ KN++L G PG GKT++A+ +A KE+ + +M VQFH SY Y DF++G RP
Sbjct: 539 LQDKKNVILQGPPGVGKTYVAKKLAYLLMKEVDSARVQM--VQFHQSYSYEDFIQGYRP- 595
Query: 214 RDSDNFGFELRNGVFKDFCAKALQN 238
SD+ FELRNG F FC KA ++
Sbjct: 596 --SDDGHFELRNGHFFQFCRKAQRD 618
>gi|146320708|ref|YP_001200419.1| GTPase subunit of restriction endonuclease [Streptococcus suis
98HAH33]
gi|145691514|gb|ABP92019.1| GTPase subunit of restriction endonuclease [Streptococcus suis
98HAH33]
Length = 223
Score = 96.3 bits (238), Expect = 6e-18, Method: Composition-based stats.
Identities = 64/172 (37%), Positives = 96/172 (55%), Gaps = 22/172 (12%)
Query: 368 TKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPE 427
+ NY FI+DEINRG++SKI GE F I+ RG+ Q + D + F +PE
Sbjct: 44 SHNYFFIMDEINRGNLSKILGEWFMLIENDKRGK------SLQLLYSD-----EQFSIPE 92
Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAK-----ETME 481
N+YIIG MN DRS+ +D+A+RRRF++ ++ P T D + ++ K +E
Sbjct: 93 NLYIIGMMNTADRSLALLDYALRRRFAFFDIKPGFSTTGFKDYQANLKNEKFDRLISCVE 152
Query: 482 RLNKAIEETEGLGSAYMIGPAYFRKLG----ENGDDFDKLWKMNIEPLLREY 529
+LN+AI E LG ++ IG +YF L E G + + + + PLL+EY
Sbjct: 153 KLNQAISTEEVLGDSFCIGHSYFCGLSAEVLEQG-LLEAIVEYELIPLLKEY 203
>gi|145223785|ref|YP_001134463.1| ATPase associated with various cellular activities, AAA_5
[Mycobacterium gilvum PYR-GCK]
gi|145216271|gb|ABP45675.1| ATPase associated with various cellular activities, AAA_5
[Mycobacterium gilvum PYR-GCK]
Length = 700
Score = 95.9 bits (237), Expect = 7e-18, Method: Composition-based stats.
Identities = 64/163 (39%), Positives = 90/163 (55%), Gaps = 17/163 (10%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
YV +IDEINRG+I KIFGEL I+ RG + Q + + PF VP+NVY
Sbjct: 507 YVVVIDEINRGNIPKIFGELITLIEKDKRG----LTVQ---LPQSGAPFA----VPKNVY 555
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEET 490
IIGTMN DRS+ +D A+RRRF ++E+ P D++ + ++ LN AI +
Sbjct: 556 IIGTMNTADRSIHLLDTALRRRFQFIELLP-DSDLLEGHTVGALALDAFLDGLNDAIRQK 614
Query: 491 EGLGSAYMIGPAYFRKLGE---NGDDFDKLWKMNIEPLLREYL 530
G IG A F + GE +DF +++ + PLL+EYL
Sbjct: 615 --FGRDKQIGHAMFFQHGEIIDKPEDFAAVFRYELLPLLQEYL 655
>gi|149019244|ref|ZP_01834606.1| endonuclease, putative [Streptococcus pneumoniae SP23-BS72]
gi|147931114|gb|EDK82093.1| endonuclease, putative [Streptococcus pneumoniae SP23-BS72]
Length = 342
Score = 94.7 bits (234), Expect = 1e-17, Method: Composition-based stats.
Identities = 47/83 (56%), Positives = 67/83 (80%), Gaps = 2/83 (2%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
L ++ NL+L+GAPGTGKT++A+ IAKE+ ++D++ FVQFHPSYDYTDFVEGLRPV +
Sbjct: 253 LLKSPNLILSGAPGTGKTYLAKEIAKELTDGNEDQIGFVQFHPSYDYTDFVEGLRPVSNG 312
Query: 217 DN-FGFELRNGVFKDFCAKALQN 238
D F L++G+FKDF +++ +N
Sbjct: 313 DGAIEFRLQDGIFKDFLSESKRN 335
>gi|119714076|ref|YP_919218.1| ATPase associated with various cellular activities, AAA_5
[Nocardioides sp. JS614]
gi|119525985|gb|ABL79355.1| ATPase associated with various cellular activities, AAA_5
[Nocardioides sp. JS614]
Length = 899
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 59/179 (32%), Positives = 98/179 (54%), Gaps = 22/179 (12%)
Query: 362 EVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKD 421
E + K +V +IDEINR +I+K+FGEL+F ++ YRG +V Y +
Sbjct: 695 EARNAEGKPFVLVIDEINRANIAKVFGELYFLLE--YRGS--EVELLYSE--------GE 742
Query: 422 GFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELS--CVEEAK-- 477
F +P+N++IIGTMN DRS+ +D AMRRRF ++ + D ++ L+ C + +
Sbjct: 743 RFSLPDNLFIIGTMNTADRSIALLDAAMRRRFVFLSMD-TDEPALSGVLARWCADNQRPP 801
Query: 478 ---ETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDD-FDKLWKMNIEPLLREYLRG 532
+ +RLN + + GL + GP+YF + G + ++LW+ + P+L E+ G
Sbjct: 802 GLAQLRDRLNAEMVK-RGLDKSLAFGPSYFMRDGSDTQGALERLWRRELRPMLVEHHYG 859
Score = 70.1 bits (170), Expect = 3e-10, Method: Composition-based stats.
Identities = 31/78 (39%), Positives = 44/78 (56%)
Query: 158 LEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEMAFVQFHPSYDYTDFVEGLRPVRDSD 217
L + K +VL G PGTGKT++ Q + + G + + A VQFHP+Y Y DFVEG RP +
Sbjct: 619 LNERKQVVLDGPPGTGKTYLVQHLLEACGVVEGQSALVQFHPTYSYEDFVEGFRPTTEGG 678
Query: 218 NFGFELRNGVFKDFCAKA 235
+R G + +A
Sbjct: 679 GATLAVRPGPLRRIADEA 696
>gi|110799098|ref|YP_695439.1| McrB domain protein [Clostridium perfringens ATCC 13124]
gi|110673745|gb|ABG82732.1| McrB domain protein [Clostridium perfringens ATCC 13124]
Length = 587
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 68/167 (40%), Positives = 93/167 (55%), Gaps = 16/167 (9%)
Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYR-GERG--KVNTQYQNIIEDSDPFKDGFFV 425
KNYV IIDEINRG+ISKIFGEL I+ R GE+ KV Y N + F V
Sbjct: 368 KNYVLIIDEINRGNISKIFGELITLIEDDKRLGEKNELKVTLPYSN---------ERFGV 418
Query: 426 PENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNK 485
P+N+YI+GTMN DRS+ +D A+RRRF + E P E +L E +C +E + +N+
Sbjct: 419 PKNLYILGTMNTADRSIALLDTALRRRFEFFEYMPK--EELLPEDACGINLREFLRVINE 476
Query: 486 AIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRG 532
IE + IG +YF K ++ + K + PL++EY G
Sbjct: 477 RIEYL--FDREHTIGHSYFLKEDLTFEELVSIMKNKVIPLVQEYFYG 521
>gi|108797806|ref|YP_638003.1| ATPase associated with various cellular activities, AAA_5
[Mycobacterium sp. MCS]
gi|119866899|ref|YP_936851.1| ATPase associated with various cellular activities, AAA_5
[Mycobacterium sp. KMS]
gi|108768225|gb|ABG06947.1| ATPase associated with various cellular activities, AAA_5
[Mycobacterium sp. MCS]
gi|119692988|gb|ABL90061.1| ATPase associated with various cellular activities, AAA_5
[Mycobacterium sp. KMS]
Length = 609
Score = 94.7 bits (234), Expect = 2e-17, Method: Composition-based stats.
Identities = 95/331 (28%), Positives = 146/331 (44%), Gaps = 61/331 (18%)
Query: 239 FKDSEKPIERLQKEGSVREILEDFIEEAIDEGTKFK-TSGTKNSFS-------------- 283
F++++ +ER E E++++ +E I+E T T G KN +
Sbjct: 281 FRNTDPWVERFGDEAP--EVIDEGDDETIEEETATSITYGIKNIIADGCFLSEQTLTGYL 338
Query: 284 -IVENNERTITVEVPANEKTRLVKLSKAELIDLMDNNISVKSGKDIQAH-------FHRK 335
VE + I P KT L K LI D++ ++S +Q H F R
Sbjct: 339 DAVERKKNLILQGPPGTGKTWLAKRLGRALIG-QDSSDLLQS---VQFHPTLSYEDFVRG 394
Query: 336 HRTQQD---SYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFF 392
R D S + L+ I K+A P Y+ +I+EINRG++++IFGEL
Sbjct: 395 WRPAGDGRLSLVDGLFLDIIKKAESNPG--------SKYILVIEEINRGNLAQIFGELLT 446
Query: 393 AIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRR 452
++ R + Y+ E ++PEN+YIIGTMN DRS+ +DFA+RRR
Sbjct: 447 LLEADKRDPAEALTLTYRRTGEPP------VYIPENLYIIGTMNLADRSLAIVDFALRRR 500
Query: 453 FSWVEVTPN---------DTESMLDELSCVEEAKETMERLNKAIEETEGLGSAYMIGPAY 503
F++ ++ P T + +DE + E + LN+ I E LG Y IG ++
Sbjct: 501 FAFADLAPQFNSSWRQWVSTRNGIDE-EILASLAERIGVLNQKITEDRSLGEQYRIGHSF 559
Query: 504 FRKLGENGDDFDKLW-----KMNIEPLLREY 529
F + D W + I PLL EY
Sbjct: 560 FTPGHDTKVDDPSQWIRHVVEQEIRPLLAEY 590
Score = 67.8 bits (164), Expect = 2e-09, Method: Composition-based stats.
Identities = 36/87 (41%), Positives = 51/87 (58%), Gaps = 5/87 (5%)
Query: 154 YIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSD--DEMAFVQFHPSYDYTDFVEGLR 211
Y++ +E+ KNL+L G PGTGKT++A+ + + + D D + VQFHP+ Y DFV G R
Sbjct: 337 YLDAVERKKNLILQGPPGTGKTWLAKRLGRALIGQDSSDLLQSVQFHPTLSYEDFVRGWR 396
Query: 212 PVRDSDNFGFELRNGVFKDFCAKALQN 238
P D L +G+F D KA N
Sbjct: 397 PAGDGR---LSLVDGLFLDIIKKAESN 420
>gi|48477100|ref|YP_022806.1| 5-methylcytosine-specific restriction enzyme B [Picrophilus
torridus DSM 9790]
gi|48429748|gb|AAT42613.1| 5-methylcytosine-specific restriction enzyme B [Picrophilus
torridus DSM 9790]
Length = 523
Score = 93.6 bits (231), Expect = 3e-17, Method: Composition-based stats.
Identities = 73/202 (36%), Positives = 114/202 (56%), Gaps = 26/202 (12%)
Query: 370 NYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENV 429
NYV IIDEINRGDIS+IFGEL ID R + + I F+ F VP+N+
Sbjct: 310 NYVMIIDEINRGDISRIFGELITLIDEDKRSDDSSGGFSIKLPI-----FQKDFSVPKNL 364
Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAK-----ETMER-- 482
YIIGTMND DRS+ +D A+RRRF ++++ P+ +++ + + + + K ET+ +
Sbjct: 365 YIIGTMNDTDRSIALLDLALRRRFVFLKIEPDI--NVVKKWTGIYDDKYPGFSETVSKFF 422
Query: 483 --LNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWK----MNIEPLLREYLRGFRKT 536
LN+ I +T+ GS ++IG +F+ L DD ++ + I PLL+E G +
Sbjct: 423 MTLNEMILKTK--GSDFLIGHGFFKDLTLKADDPYRILRYIFVYKIIPLLQEIYYG---S 477
Query: 537 NEIMNQL-REAYVGEKEEEHSN 557
N+I+ ++ + EK+E N
Sbjct: 478 NDILYEIVLKGKFFEKKENDGN 499
>gi|153012112|ref|YP_001373323.1| GTPase subunit of restriction endonuclease-like protein
[Ochrobactrum anthropi ATCC 49188]
gi|151564000|gb|ABS17494.1| GTPase subunit of restriction endonuclease-like protein
[Ochrobactrum anthropi ATCC 49188]
Length = 722
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 73/193 (37%), Positives = 107/193 (55%), Gaps = 21/193 (10%)
Query: 363 VSKVDTKNYVF-----IIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDS 416
+ + TKN VF IIDEINRG+ISKI GE I+P R G + + T I+ S
Sbjct: 485 LERTPTKNDVFRKRVLIIDEINRGNISKILGETITLIEPSKRLGTKEALTT----ILPYS 540
Query: 417 DPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEA 476
K F VP ++IIGTMN DRS+ ++D A+RRRF + E+ P T+ E++ V+ A
Sbjct: 541 ---KTTFGVPVGLHIIGTMNTADRSLASIDMALRRRFVFEEIEPQTTQLEGVEIAGVDLA 597
Query: 477 KETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKM---NIEPLLREY-LRG 532
+ + +N IE L + +G AYF L + DD D+L ++ I PLL+EY
Sbjct: 598 -QLLSVMNARIEAL--LDRDHRLGHAYFLNL-QASDDIDQLKELFSRRIVPLLKEYFFDD 653
Query: 533 FRKTNEIMNQLRE 545
+R+ ++N R+
Sbjct: 654 WRRIRLVLNDQRK 666
>gi|104782352|ref|YP_608850.1| hypothetical protein PSEEN3305 [Pseudomonas entomophila L48]
gi|95111339|emb|CAK16059.1| conserved hypothetical protein [Pseudomonas]
Length = 675
Score = 93.2 bits (230), Expect = 4e-17, Method: Composition-based stats.
Identities = 76/222 (34%), Positives = 114/222 (51%), Gaps = 18/222 (8%)
Query: 342 SYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGE 401
S+ +L + K+ A + V + + K +V IIDEINRG++S+IFGEL I+ R
Sbjct: 347 SWADLLSYLEKQGVAPVVPLVVKQDERKPHVLIIDEINRGNVSRIFGELITLIEASKR-- 404
Query: 402 RGKVNTQYQNIIEDSDPF-KDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTP 460
Q + P+ K F VP NVYIIGTMN DRS+ +D A+RRRF + E+ P
Sbjct: 405 -----EGAQEALSVELPYSKKPFSVPSNVYIIGTMNTADRSLAGLDIALRRRFVFREMPP 459
Query: 461 NDTESMLDELSCVE--EAKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENG--DDFDK 516
+LD + VE + + LN IE L + +G AYF L E+ +
Sbjct: 460 R--AELLDGV-MVEGVDIGLLLRALNLRIEAL--LDRDHCLGHAYFMPLREDARLERLAL 514
Query: 517 LWKMNIEPLLREY-LRGFRKTNEIMNQLREAYVGEKEEEHSN 557
+++ I PLL+EY +++ +MN R+A +E +N
Sbjct: 515 IFRNQILPLLQEYFFEDWQRIQWVMNDHRKADSDRFVQEQAN 556
>gi|118031290|ref|ZP_01502745.1| ATPase associated with various cellular activities, AAA_5
[Burkholderia phymatum STM815]
gi|117983179|gb|EAU97562.1| ATPase associated with various cellular activities, AAA_5
[Burkholderia phymatum STM815]
Length = 798
Score = 93.2 bits (230), Expect = 5e-17, Method: Composition-based stats.
Identities = 91/330 (27%), Positives = 142/330 (43%), Gaps = 60/330 (18%)
Query: 240 KDSEKPIERLQKEGSVREILEDFI-------------------EEAIDEGTKFKTSGTKN 280
KD EK R Q GS E L D I E I++G
Sbjct: 470 KDFEK---RWQIRGSAVEALADIIAVPQAVDSSSAGVSAMYTVESIIEDGCFIPQEELSA 526
Query: 281 SFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNN--ISVKSGKDIQAH-FHRKHR 337
+++N I P KT L K L++ D + +SV+ + F R R
Sbjct: 527 MLRLLKNKSNLILQGPPGTGKTWLAKRLGYALLNRKDYSRLVSVQFQPSLSYEDFVRGWR 586
Query: 338 TQQDSYIFVLYNIIKK---QAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAI 394
D + ++ + + QA + P + YV +I+EINRG+ +++FGEL +
Sbjct: 587 PGADGRLDLIDGVFLEAIAQAQRSP---------EPYVVVIEEINRGNPAQVFGELLTLL 637
Query: 395 DPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFS 454
+ R E + Y E+ ++P+N+Y+IGTMN DRS+ +D A+RRRF+
Sbjct: 638 EHDKRKEEEALRPAYVRSPEER------IYIPKNLYVIGTMNVADRSLALIDLALRRRFA 691
Query: 455 WVEVTPNDTESMLDELSCV-------EEAKET---MERLNKAIEETEGLGSAYMIGPAYF 504
+ +TP D C+ ++A + ++RLN+ I + LG + IG ++
Sbjct: 692 FATLTPALGSQWRD--WCMTHGGFSNDDANDISMRIQRLNERITKDRSLGEQFRIGHSFV 749
Query: 505 RKLGENGDDFDKLW-----KMNIEPLLREY 529
E D + W K IEPLLREY
Sbjct: 750 TPAQEAKIDNARAWFAEVVKSEIEPLLREY 779
Score = 60.5 bits (145), Expect = 3e-07, Method: Composition-based stats.
Identities = 34/91 (37%), Positives = 49/91 (53%), Gaps = 5/91 (5%)
Query: 147 PTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDD--EMAFVQFHPSYDYT 204
P + + + LL+ NL+L G PGTGKT++A+ + + D + VQF PS Y
Sbjct: 520 PQEELSAMLRLLKNKSNLILQGPPGTGKTWLAKRLGYALLNRKDYSRLVSVQFQPSLSYE 579
Query: 205 DFVEGLRPVRDSDNFGFELRNGVFKDFCAKA 235
DFV G RP D +L +GVF + A+A
Sbjct: 580 DFVRGWRPGADGR---LDLIDGVFLEAIAQA 607
>gi|109671972|ref|ZP_01374215.1| putative endonuclease [Campylobacter concisus 13826]
gi|112800840|gb|EAT98184.1| thiamine-phosphate pyrophosphorylase [Campylobacter concisus 13826]
Length = 590
Score = 92.0 bits (227), Expect = 1e-16, Method: Composition-based stats.
Identities = 65/218 (29%), Positives = 107/218 (49%), Gaps = 33/218 (15%)
Query: 361 VEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGK---------------- 404
+E +K K Y F+ DEINR ++S++FGEL ++ R K
Sbjct: 359 LEKNKEKAKKYYFVADEINRAELSRVFGELLLCLEEDKRLRFDKDGNLQGMLVKTANSSL 418
Query: 405 VNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSW--------- 455
N + + D + + F VPEN+Y IGTMNDID+S+++ D A+RRRF W
Sbjct: 419 WNNEKHAVYVDKETGEGYFGVPENLYFIGTMNDIDKSIDSFDMALRRRFVWKRYRCDYDV 478
Query: 456 -----VEVTPNDTESMLDELSCVEEAKETMERLNKAIEETEGLG--SAYMIGPAYFRKLG 508
++ + + + D + ++ E + +N+ I +GLG +Y +G +YF K
Sbjct: 479 IADHFAKLINSKSNAKPDTETYIQTYIELCKDINEYITSEKGLGLDDSYELGHSYFLKPK 538
Query: 509 E-NGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLRE 545
+ + +LW +I PLL+EYLR +I +L +
Sbjct: 539 KLTKSEISRLWNEHISPLLKEYLRTQYSGKDIETRLND 576
Score = 73.2 bits (178), Expect = 5e-11, Method: Composition-based stats.
Identities = 43/95 (45%), Positives = 61/95 (64%), Gaps = 6/95 (6%)
Query: 160 QNKNLVLTGAPGTGKTFMAQAI--AKEMGCSDDEMAFVQFHPSYDYTDFVEGLRPVR-DS 216
++KN++L GAPGTGKT+ + AK+ + E VQFHPSY Y DF++G++P+ ++
Sbjct: 277 ESKNIILYGAPGTGKTYQTKQTIEAKKQIKENCEYKIVQFHPSYSYEDFMDGVKPIGIEN 336
Query: 217 DNFGFELRNGVFKDFCAKALQNFKDSEKPIERLQK 251
FELRNGVFK C A FK+ EK E+ +K
Sbjct: 337 GAMKFELRNGVFKQMCIDA---FKELEKNKEKAKK 368
>gi|148549822|ref|YP_001269924.1| ATPase associated with various cellular activities, AAA_5
[Pseudomonas putida F1]
gi|148513880|gb|ABQ80740.1| ATPase associated with various cellular activities, AAA_5
[Pseudomonas putida F1]
Length = 862
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/178 (35%), Positives = 97/178 (54%), Gaps = 19/178 (10%)
Query: 358 KPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDS 416
KP + D + V IIDEINRG+IS+IFGEL I+P R GE ++
Sbjct: 618 KPQASSAVTDAR--VLIIDEINRGNISRIFGELITLIEPSKRAGEEEALSVVL------- 668
Query: 417 DPF-KDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVE- 474
P+ K F VP N+++IGTMN DRS+ +D A+RRRF + E+ P +LD++
Sbjct: 669 -PYSKQRFSVPSNLHLIGTMNTTDRSLAGLDMALRRRFVFQEMPPR--PELLDDVVVQGL 725
Query: 475 EAKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENG--DDFDKLWKMNIEPLLREYL 530
+ + +N+ IE L + +G AYF L ++G + + +++ I PLL+EY
Sbjct: 726 NIGQLLRVMNQRIEVL--LDRDHCLGHAYFMPLQDDGSLEHLEAIFRSQILPLLQEYF 781
>gi|113866039|ref|YP_724528.1| 5-Methylcytosine-specific restriction enzyme B [Ralstonia eutropha
H16]
gi|113524815|emb|CAJ91160.1| 5-Methylcytosine-specific restriction enzyme B [Ralstonia eutropha
H16]
Length = 792
Score = 91.7 bits (226), Expect = 1e-16, Method: Composition-based stats.
Identities = 64/174 (36%), Positives = 90/174 (51%), Gaps = 19/174 (10%)
Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPEN 428
+ + +IDEINRG+ISKIFGEL I+P R N + + P DGF VP N
Sbjct: 552 QRFAMVIDEINRGNISKIFGELITLIEPDKR-------EGADNAVSVTLPSGDGFSVPSN 604
Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCV-----EEAKETMERL 483
V IIGTMN DRS+ +D A+RRRF +V V P+ + L+ + E+ + L
Sbjct: 605 VDIIGTMNTADRSLALLDTALRRRFEFVPVMPDARDESGAPLAGLRVTLGEQVIDVPRML 664
Query: 484 NKAIEETEGL-GSAYMIGPAYFRKLGE--NGDD----FDKLWKMNIEPLLREYL 530
+ + E L + IG AYF L + +GD+ +++ I PLL EY
Sbjct: 665 DAINQRVEALYDRDHCIGHAYFTTLAKFPDGDERLVALQQVFSTRILPLLEEYF 718
>gi|23126777|ref|ZP_00108663.1| COG1401: GTPase subunit of restriction endonuclease [Nostoc
punctiforme PCC 73102]
Length = 529
Score = 91.3 bits (225), Expect = 2e-16, Method: Composition-based stats.
Identities = 63/165 (38%), Positives = 91/165 (55%), Gaps = 29/165 (17%)
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDG--FFVPENV 429
V IIDEINR +++++FGEL + + +Y+N P G F +PENV
Sbjct: 367 VLIIDEINRANLAQVFGELMYLL-------------EYRN---REIPLAGGNTFRIPENV 410
Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELS--CVEEAKETMERLNKA 486
IIGTMN DRS+ N+D A+RRRF+++E+ PN D + VE +++LN+A
Sbjct: 411 RIIGTMNTADRSIANIDHALRRRFAFIELRPNYDVLRRYHQKRGFAVEGLINILQQLNQA 470
Query: 487 IEETEGLGSAYMIGPAYFRKLGEN-GDDFDKLWKMNIEPLLREYL 530
I + Y IG ++F L +N +D D +W M IEP L EY
Sbjct: 471 IADKN-----YEIGISFF--LTDNLREDMDDIWPMEIEPYLEEYF 508
Score = 72.8 bits (177), Expect = 7e-11, Method: Composition-based stats.
Identities = 33/84 (39%), Positives = 53/84 (63%), Gaps = 1/84 (1%)
Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLR 211
++I + + K ++L+G+PGTGKTF+A+ +A+ + G SD +QFHP+Y Y DF++G+R
Sbjct: 276 RWIRTINRKKQIILSGSPGTGKTFIAKHLAEHLIGGSDGFSELLQFHPTYSYEDFIQGIR 335
Query: 212 PVRDSDNFGFELRNGVFKDFCAKA 235
P + L G F FC +A
Sbjct: 336 PQSQDGQLTYPLVPGRFLKFCKEA 359
>gi|126656651|ref|ZP_01727865.1| putative restriction enzyme [Cyanothece sp. CCY0110]
gi|126621871|gb|EAZ92579.1| putative restriction enzyme [Cyanothece sp. CCY0110]
Length = 540
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 64/177 (36%), Positives = 94/177 (53%), Gaps = 31/177 (17%)
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
+ IIDEINR ++S++FGEL + ++ YR E K+ Q F +P+NVYI
Sbjct: 369 ILIIDEINRANLSQVFGELMYLLE--YREEEIKLAGSDQK-----------FKIPKNVYI 415
Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPN--------DTESMLDELSCVEEAKETMERL 483
IGTMN DRS+ +D A+RRRF+++ + PN + +E +E L
Sbjct: 416 IGTMNTADRSIALVDHALRRRFAFIPIKPNYDILRRYHQKHKTNYNIEFIESLINILEEL 475
Query: 484 NKAIEETEGLGSAYMIGPAYFRKLGEN-GDDFDKLWKMNIEPLLREYLRGFRKTNEI 539
NK I +++ Y IG ++F L E DD + +W M IEP L EY F +T +I
Sbjct: 476 NKTINDSD-----YEIGVSFF--LTETLKDDLEDIWTMEIEPYLEEYF--FDETGKI 523
Score = 79.0 bits (193), Expect = 8e-13, Method: Composition-based stats.
Identities = 61/221 (27%), Positives = 109/221 (49%), Gaps = 15/221 (6%)
Query: 142 VRNAEPTRKY------AKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEM-AF 194
+R+ +P Y +YI+ L++ K+++ G+PGTGKT++A+ IAK + S D
Sbjct: 260 IRDMKPQETYIEETQLEQYIDTLKRKKHIIFQGSPGTGKTYLAKHIAKHLTSSGDGFHEL 319
Query: 195 VQFHPSYDYTDFVEGLRPVRDSD-NFGFELRNGVFKDFCAKALQNFKDSEKPIERLQKEG 253
+QFHPSY Y DF++G+RP D N + + G F FC +A + I+ + +
Sbjct: 320 IQFHPSYSYEDFIQGIRPQTSPDKNLNYSMVPGRFLTFCEEAEEKEGMCILIIDEINR-A 378
Query: 254 SVREILEDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELI 313
++ ++ + + + K +G+ F I +N + + N R + L L
Sbjct: 379 NLSQVFGELMYLLEYREEEIKLAGSDQKFKIPKN----VYIIGTMNTADRSIALVDHALR 434
Query: 314 DLMDNNISVKSGKDIQAHFHRKHRTQQD-SYIFVLYNIIKK 353
I +K DI +H+KH+T + +I L NI+++
Sbjct: 435 RRF-AFIPIKPNYDILRRYHQKHKTNYNIEFIESLINILEE 474
>gi|156449126|ref|ZP_02055509.1| ATPase associated with various cellular activities, AAA_5
[Methylobacterium chloromethanicum CM4]
gi|156191663|gb|EDO23849.1| ATPase associated with various cellular activities, AAA_5
[Methylobacterium chloromethanicum CM4]
Length = 723
Score = 90.9 bits (224), Expect = 2e-16, Method: Composition-based stats.
Identities = 59/163 (36%), Positives = 86/163 (52%), Gaps = 15/163 (9%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPFKDGFFVPENV 429
+V +IDEINR +ISK+FGEL I+P R G G++ + D F +P+N+
Sbjct: 516 FVLVIDEINRANISKVFGELITLIEPDKRLGRPGEITVRLP-------ASGDSFGIPDNL 568
Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELS--CVEEAKETMERLNKAI 487
+I+GTMN DRS+ +D A+RRRFS+VE+ P+ +L E C + + +N I
Sbjct: 569 HIVGTMNTADRSIALLDTALRRRFSFVELMPD--PGLLAEAGERCGVDLVALLTGINARI 626
Query: 488 EETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
E + IG AYF D D + + + PLL EY
Sbjct: 627 EYL--FDREHQIGHAYFMHCASR-TDVDDVMRHRVIPLLAEYF 666
Score = 58.5 bits (140), Expect = 1e-06, Method: Composition-based stats.
Identities = 38/100 (38%), Positives = 47/100 (47%), Gaps = 22/100 (22%)
Query: 163 NLVLTGAPGTGKTFMAQAIAKEM--GCSDD----------------EMAFVQFHPSYDYT 204
NL+L G PGTGKT+ A A + G + D ++ FV FH SY Y
Sbjct: 232 NLILYGPPGTGKTYRTAAEAVRLCDGATPDTREGTMARYRGLVEAGQIRFVTFHQSYAYE 291
Query: 205 DFVEGLRP----VRDSDNFGFELRNGVFKDFCAKALQNFK 240
DFVEGLRP D F E R G+F++ A Q K
Sbjct: 292 DFVEGLRPETGTSEDGTGFRLEPRRGIFREIATLAEQARK 331
>gi|56479205|ref|YP_160794.1| AAA ATPase superfamily protein, fragment [Azoarcus sp. EbN1]
gi|56315248|emb|CAI09893.1| AAA ATPase superfamily protein, fragment [Azoarcus sp. EbN1]
Length = 353
Score = 90.5 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 97/190 (51%), Gaps = 25/190 (13%)
Query: 353 KQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNI 412
K A+K PS +V +I+EINRG+ ++IFGEL ++ G R + Y
Sbjct: 157 KAASKDPSAR--------FVVVIEEINRGNPAQIFGELLTLLEAGKRTPNEALELCY--- 205
Query: 413 IEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLD---- 468
D+D + +PEN+Y++GTMN DRS+ +D A+RRRF++V + P + + D
Sbjct: 206 -PDADGKRRPVHIPENLYVVGTMNIADRSLALVDLALRRRFAFVGLEPRLSPAWRDWVVK 264
Query: 469 ----ELSCVEEAKETMERLNKAIEETEGLGSAYMIG-----PAYFRKLGENGDDFDKLWK 519
+ + V + + + LN I LG + IG PA+ + G+ + F ++ +
Sbjct: 265 ECAVDPALVADIERRIAELNDQIAADARLGKQFRIGHSYVTPAHRLEAGDTKNWFRQIVE 324
Query: 520 MNIEPLLREY 529
I PLL EY
Sbjct: 325 TEIGPLLDEY 334
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/78 (43%), Positives = 47/78 (60%), Gaps = 5/78 (6%)
Query: 155 IELLEQNKNLVLTGAPGTGKTFMAQAIA-KEMGCSDD-EMAFVQFHPSYDYTDFVEGLRP 212
++ L KNL+L G PGTGKT++A+ +A MG DD ++ VQFHP+ Y DFV G RP
Sbjct: 80 LDRLRTKKNLILQGPPGTGKTWLAKRLAFALMGQKDDSKVRAVQFHPNLSYEDFVRGWRP 139
Query: 213 VRDSDNFGFELRNGVFKD 230
+ L +GVF +
Sbjct: 140 TGEGK---LSLADGVFME 154
>gi|115378762|ref|ZP_01465907.1| ATPase family associated with various cellular activities (AAA),
putative [Stigmatella aurantiaca DW4/3-1]
gi|115364246|gb|EAU63336.1| ATPase family associated with various cellular activities (AAA),
putative [Stigmatella aurantiaca DW4/3-1]
Length = 948
Score = 90.5 bits (223), Expect = 3e-16, Method: Composition-based stats.
Identities = 56/187 (29%), Positives = 98/187 (52%), Gaps = 26/187 (13%)
Query: 368 TKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPE 427
T+ +V +IDEINRG + ++FGEL + ++ YR ER ++ D F +P
Sbjct: 769 TERFVLLIDEINRGALPRVFGELLYLLE--YREERVRLAGS-----------GDFFELPT 815
Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDEL-------SCVEEAKETM 480
N+Y+IGTMN DRS+ +D A+RRRF +V + P D E + L + A + +
Sbjct: 816 NLYLIGTMNSADRSIAQIDVALRRRFHFVRMDP-DAEILRRNLLKWDVAPDVCDWAVQGL 874
Query: 481 ERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIM 540
E +N I + G + IG ++F + +++W+ +I P+L + F + +++
Sbjct: 875 EAVNARIARSP--GREFCIGHSFFMDKDLDPGRVERIWRHDIAPMLEDC---FYDSPQVV 929
Query: 541 NQLREAY 547
+LR +
Sbjct: 930 PELRALF 936
Score = 76.6 bits (187), Expect = 4e-12, Method: Composition-based stats.
Identities = 39/96 (40%), Positives = 53/96 (55%), Gaps = 9/96 (9%)
Query: 157 LLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEMAFVQFHPSYDYTDFVEGLRPVRDS 216
LLE + L+L G PGTGKT++A+ +A+ ++ VQFHP+Y Y DFVEGLRP D+
Sbjct: 683 LLEHRRQLILYGPPGTGKTYIARELARYQAGAETRCERVQFHPAYSYEDFVEGLRPQVDA 742
Query: 217 DNFG---FELRNGVFKDFCAKALQNFKDSEKPIERL 249
G +E R G+ K +A P ER
Sbjct: 743 QAPGGLRYEYRPGILKSLAERA------QASPTERF 772
>gi|118444185|ref|YP_877506.1| endonuclease, putative [Clostridium novyi NT]
gi|118134641|gb|ABK61685.1| endonuclease, putative [Clostridium novyi NT]
Length = 301
Score = 89.7 bits (221), Expect = 4e-16, Method: Composition-based stats.
Identities = 69/176 (39%), Positives = 95/176 (53%), Gaps = 16/176 (9%)
Query: 360 SVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR-GERG--KVNTQYQNIIEDS 416
S + + + NYV +IDEINRG+ISKIFGEL I+ R GE+ KV Y N
Sbjct: 72 SNSIEESENNNYVLVIDEINRGNISKIFGELITLIEDDKRIGEKNELKVVLPYSN----- 126
Query: 417 DPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEA 476
F VP N+YI+GTMN DRS+ +D A+RRRF ++E PN ES+L E
Sbjct: 127 ----KKFGVPNNLYILGTMNTADRSIALLDNALRRRFDFIEYMPN--ESILPENVDGINL 180
Query: 477 KETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRG 532
K+ ++ +N IE + IG AYF K + + + K + PL++EY G
Sbjct: 181 KKFLKVINDRIEYL--FDREHTIGHAYFIKDNIDFNSLVLIMKNKVIPLIQEYFYG 234
>gi|49482329|ref|YP_039553.1| putative restriction enzyme [Staphylococcus aureus subsp. aureus
MRSA252]
gi|49240458|emb|CAG39114.1| putative restriction enzyme [Staphylococcus aureus subsp. aureus
MRSA252]
Length = 567
Score = 89.4 bits (220), Expect = 7e-16, Method: Composition-based stats.
Identities = 59/166 (35%), Positives = 91/166 (54%), Gaps = 18/166 (10%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
Y IIDEINRG++SKIFGELF I+ R E ++ Y + F VP N+Y
Sbjct: 391 YFLIIDEINRGNLSKIFGELFMLIESDKRDE--ELILLYSG---------ERFSVPRNIY 439
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDEL------SCVEEAKETMERLN 484
I+G MN DRS+ +D+A+RRRF++ + P + +L + +E +E LN
Sbjct: 440 IVGMMNTADRSLAILDYALRRRFAFYNMQPAFHTTKFKKLLKAINNTELESVINCIEGLN 499
Query: 485 KAIEETEGLGSAYMIGPAYFRKLG-ENGDDFDKLWKMNIEPLLREY 529
K I + + LG+ ++IG +YF + + D+ + + I P+L EY
Sbjct: 500 KEIVQDDMLGNGFVIGHSYFSNIECIDKDELSNIIEFEIIPMLEEY 545
Score = 72.4 bits (176), Expect = 8e-11, Method: Composition-based stats.
Identities = 39/95 (41%), Positives = 58/95 (61%), Gaps = 7/95 (7%)
Query: 151 YAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCS--DDEMAFVQFHPSYDYTDFVE 208
Y + ++LL + +N++L G PG GKTF+A+ +A + S + + +QFH SY Y DF+
Sbjct: 301 YDRLVQLLRRKRNVILQGPPGVGKTFLAKRLAYSLIGSKCKERIKLIQFHQSYSYEDFIM 360
Query: 209 GLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSE 243
G RP GFEL G F DFC KA ++ +D+E
Sbjct: 361 GYRPTSS----GFELTTGTFYDFCKKADKD-RDNE 390
>gi|55379062|ref|YP_136912.1| hypothetical protein rrnAC2392 [Haloarcula marismortui ATCC 43049]
gi|55231787|gb|AAV47206.1| unknown [Haloarcula marismortui ATCC 43049]
Length = 544
Score = 89.0 bits (219), Expect = 9e-16, Method: Composition-based stats.
Identities = 71/217 (32%), Positives = 107/217 (49%), Gaps = 32/217 (14%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
YV +IDEINRG++++IFGE ++ RG T + ++ F +P N+Y
Sbjct: 330 YVLLIDEINRGNLAQIFGETITLLEEDKRG------TLHVDLAHSGGSFT----IPPNLY 379
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPN----------DTESMLD-----ELSCVEE 475
+IGTMN DRSV +D A+RRRF +++ P+ DTE L E S +E+
Sbjct: 380 VIGTMNTADRSVALVDAALRRRFRFIDFPPDYGVARSRFGFDTEYDLTSAARGERSDLEQ 439
Query: 476 AK----ETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLR 531
+ + +E+LN+ I E LG IG +Y ++ W+ I PLL EY
Sbjct: 440 LQALSIQAVEQLNETIIELPDLGKGKQIGHSYLLVDPDDEQALVDAWRYEILPLLEEYFY 499
Query: 532 G--FRKTNEIMNQLREAYVG-EKEEEHSNIPELTDEN 565
G R E+ NQ ++ V E+E+ PE E+
Sbjct: 500 GQLSRIRQELFNQNGDSLVDWEREQIKDFDPETLRES 536
Score = 59.3 bits (142), Expect = 7e-07, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 51/98 (52%), Gaps = 6/98 (6%)
Query: 151 YAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAK------EMGCSDDEMAFVQFHPSYDYT 204
YA LE+ +V G PGTGKT+ AQ A+ + + ++ V FHPSY Y
Sbjct: 224 YANIARQLEEVGQVVFYGPPGTGKTYNAQQFARWWLHNLQSEPRESQVRSVTFHPSYTYE 283
Query: 205 DFVEGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDS 242
DF+EGL ++ ++++ G FK C A ++++
Sbjct: 284 DFIEGLTANATENSVSYDIKPGKFKAICEDARVAYQET 321
>gi|145294212|ref|YP_001137033.1| hypothetical protein cgR_0169 [Corynebacterium glutamicum R]
gi|57158026|dbj|BAD84000.1| hypothetical protein [Corynebacterium glutamicum]
gi|140844132|dbj|BAF53131.1| hypothetical protein [Corynebacterium glutamicum R]
Length = 473
Score = 88.2 bits (217), Expect = 1e-15, Method: Composition-based stats.
Identities = 62/175 (35%), Positives = 90/175 (51%), Gaps = 31/175 (17%)
Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPEN 428
+ Y FIIDEINRG+ISKIFGEL I+ RG+ ++ Y+N + F +P N
Sbjct: 296 RPYFFIIDEINRGNISKIFGELLMLIESDKRGQ--ELRLLYKN---------ETFSIPAN 344
Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTP------------NDTESMLDELSCVEEA 476
V+IIG MN DRS+ +D+A+RRRF + E+ P + ML+ L V
Sbjct: 345 VHIIGMMNTADRSLAVLDYALRRRFGFFELAPAYESAGFAQWIQSADNPMLNRLVSV--- 401
Query: 477 KETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDD--FDKLWKMNIEPLLREY 529
+ LN+ I + LG + IG ++ + N D+ + + I PLL EY
Sbjct: 402 ---ILDLNREIIDDPTLGQGFAIGHSFLSQPVGNADEAWLYSVVEDEIIPLLNEY 453
Score = 70.5 bits (171), Expect = 3e-10, Method: Composition-based stats.
Identities = 48/146 (32%), Positives = 78/146 (53%), Gaps = 14/146 (9%)
Query: 150 KYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKE-MGCSD-DEMAFVQFHPSYDYTDFV 207
+Y + LL + KN++L G PG GKT+ A+ +A MG D + +QFH SY Y DF+
Sbjct: 205 RYVRLRSLLGRKKNVILAGPPGVGKTYAAKRLAYSIMGTKDPSRVQMIQFHQSYSYEDFM 264
Query: 208 EGLRPVRDSDNFGFELRNGVFKDFCAKALQNFKDSEKP----IERLQKEGSVREILEDFI 263
G RP ++N GF + G F FC KA + D+++P I+ + + G++ +I + +
Sbjct: 265 MGYRP---TENGGFIISEGPFYRFCEKARAD--DADRPYFFIIDEINR-GNISKIFGELL 318
Query: 264 E--EAIDEGTKFKTSGTKNSFSIVEN 287
E+ G + + +FSI N
Sbjct: 319 MLIESDKRGQELRLLYKNETFSIPAN 344
>gi|92109628|ref|YP_571915.1| ATPase associated with various cellular activities, AAA_5
[Nitrobacter hamburgensis X14]
gi|91802710|gb|ABE65083.1| ATPase associated with various cellular activities, AAA_5
[Nitrobacter hamburgensis X14]
Length = 734
Score = 87.4 bits (215), Expect = 3e-15, Method: Composition-based stats.
Identities = 81/295 (27%), Positives = 136/295 (46%), Gaps = 34/295 (11%)
Query: 263 IEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNN--I 320
+E IDEG + + + + +++ + + P KT L K LI D + +
Sbjct: 445 VEAIIDEGCFLERATLEQAIDLLKTKKNLVLQGPPGTGKTWLAKRLGYALIGEKDPSRLM 504
Query: 321 SVKSGKDIQAH-FHRKHRTQQDSYIFVLYNIIKKQAAKKPSVEVSKVD-TKNYVFIIDEI 378
+V+ + F R +R + + ++ A +V V+K + + YV +I+EI
Sbjct: 505 AVQFQPSLSYEDFVRGYRPNGTTGLQLV------DGAFLEAVAVAKAEPARPYVLVIEEI 558
Query: 379 NRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDI 438
NRG+ ++IFGEL ++ R E + Y I ++ VP N+Y++GTMN
Sbjct: 559 NRGNPAQIFGELLTLLEADKRSESEALRLAYP--ISQTERVH----VPPNLYVVGTMNLA 612
Query: 439 DRSVENMDFAMRRRFSWVEVTPN---------DTESMLDELSCVEEAKETMERLNKAIEE 489
DRS+ +D A+RRRF++V + PN DEL ++ + + LN+ I
Sbjct: 613 DRSLALVDLALRRRFAFVNLNPNFGAAWQQYCKARGAPDEL--LQAIGQAIVALNEVIAA 670
Query: 490 TEGLGSAYMIGPAYFRKLGENGDDFD-KLWKMN-----IEPLLREYLRGFRKTNE 538
+ LG+ + +G ++ EN D K W N I+PLL EY R E
Sbjct: 671 DQSLGAQFSVGHSFLTP-AENMDAARWKTWIGNVILTEIKPLLLEYWYDARAKAE 724
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 35/83 (42%), Positives = 47/83 (56%), Gaps = 5/83 (6%)
Query: 155 IELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDD--EMAFVQFHPSYDYTDFVEGLRP 212
I+LL+ KNLVL G PGTGKT++A+ + + D + VQF PS Y DFV G RP
Sbjct: 464 IDLLKTKKNLVLQGPPGTGKTWLAKRLGYALIGEKDPSRLMAVQFQPSLSYEDFVRGYRP 523
Query: 213 VRDSDNFGFELRNGVFKDFCAKA 235
+ G +L +G F + A A
Sbjct: 524 ---NGTTGLQLVDGAFLEAVAVA 543
>gi|119490044|ref|ZP_01622668.1| component of 5-methylcytosine-specific restriction enzyme McrBC
[Lyngbya sp. PCC 8106]
gi|119454196|gb|EAW35348.1| component of 5-methylcytosine-specific restriction enzyme McrBC
[Lyngbya sp. PCC 8106]
Length = 531
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 61/180 (33%), Positives = 98/180 (54%), Gaps = 20/180 (11%)
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
V IIDEINRG++++IFGEL + ++ YR E + + Q F + ENV I
Sbjct: 369 VLIIDEINRGNVARIFGELMYLLE--YRNEEIYLTSGEQ------------FGISENVRI 414
Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIEETE 491
IGTMN DRS+ +D A+RRRF+++ ++PN E + ++ + E + + K + +
Sbjct: 415 IGTMNTADRSIALVDHALRRRFAFISLSPN-YEVLRRYHRGIDFSVEGLIKTLKQVNQQI 473
Query: 492 GLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAYVGEK 551
G S Y IG ++F + + + + +WK+ IEP L EY F +NQ R V ++
Sbjct: 474 G-NSHYEIGISFFLQ-PDITQEIESIWKLEIEPYLEEY---FFDQASTVNQFRWEQVKQQ 528
Score = 73.6 bits (179), Expect = 4e-11, Method: Composition-based stats.
Identities = 32/83 (38%), Positives = 56/83 (67%), Gaps = 1/83 (1%)
Query: 154 YIELLEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLRP 212
+++ LE+ + ++ +G PGTGKT++A+ +AK + + + VQFHP+Y Y DFV+G+RP
Sbjct: 279 WLQALERKQQIIFSGPPGTGKTYIAKKLAKYLVSGGNGFIDVVQFHPAYAYEDFVQGIRP 338
Query: 213 VRDSDNFGFELRNGVFKDFCAKA 235
++ + + L NG F +FC +A
Sbjct: 339 QKNGEQLDYPLVNGRFLNFCQQA 361
>gi|126438633|ref|YP_001060513.1| AAA_5 ATPase [Burkholderia pseudomallei 668]
gi|126218126|gb|ABN81632.1| AAA_5 ATPase [Burkholderia pseudomallei 668]
Length = 666
Score = 87.0 bits (214), Expect = 3e-15, Method: Composition-based stats.
Identities = 57/170 (33%), Positives = 88/170 (51%), Gaps = 19/170 (11%)
Query: 370 NYVFIIDEINRGDISKIFGELFFAIDPGYRGERG---KVNTQYQNIIEDSDPFKDGFFVP 426
NYV +IDEINRGD+S++ G L +++ R QY ED ++P
Sbjct: 413 NYVIVIDEINRGDLSRVLGPLISSLEADKRAGSDFPIGYELQYPQNGEDGR-----LYLP 467
Query: 427 ENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT--ESMLDEL--SCVEEAKETMER 482
N++I+GTMN DR+V +D+A+RRRF +VE+ P + +DEL C + +R
Sbjct: 468 SNLHILGTMNSTDRNVALVDYALRRRFDFVEIPPEPELLATTVDELPIDCAALLRTLNQR 527
Query: 483 LNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRG 532
+ +++ LG +++G N D ++L K I P LREY G
Sbjct: 528 IAYLLDDNHRLGHGFLMG------CRNNRDVCERLAKKVI-PQLREYFFG 570
>gi|145954110|ref|ZP_01803117.1| hypothetical protein CdifQ_04002412 [Clostridium difficile
QCD-32g58]
Length = 550
Score = 86.7 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 14/165 (8%)
Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVP 426
+++NYV IIDEINRG++SKIFGEL + E K T+ I K+ F +P
Sbjct: 334 ESENYVLIIDEINRGNVSKIFGELITLL------EDDKRLTKSNQTIVKLPYSKEKFSLP 387
Query: 427 ENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAKETMERLNK 485
N+YI+GTMN D+S+ +D A+RRRF++ E+ P+ D S++D + + ++ + +NK
Sbjct: 388 PNLYIVGTMNTSDKSIALLDIALRRRFNFEEIMPDYDLLSIVDGI----DIRKMLYTINK 443
Query: 486 AIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
IE ++IG AY + EN +D +++ I PLL+EY
Sbjct: 444 RIEFL--YDRDHVIGQAYLLAV-ENINDIVVVFRSKIIPLLQEYF 485
>gi|134297904|ref|YP_001111400.1| ATPase associated with various cellular activities, AAA_5
[Desulfotomaculum reducens MI-1]
gi|134050604|gb|ABO48575.1| ATPase associated with various cellular activities, AAA_5
[Desulfotomaculum reducens MI-1]
Length = 629
Score = 86.7 bits (213), Expect = 4e-15, Method: Composition-based stats.
Identities = 58/168 (34%), Positives = 91/168 (54%), Gaps = 35/168 (20%)
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDG--FFVPENV 429
V IIDEINR ++S++FGEL + ++ YR + P G F +P NV
Sbjct: 467 VLIIDEINRANLSRVFGELMYLLE--YR--------------DAEIPLASGGTFSLPRNV 510
Query: 430 YIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-------DTESMLDELSCVEEAKETMER 482
IIGTMN DRS+ +DFA+R RF+++ + PN T++ L VE ET+ +
Sbjct: 511 RIIGTMNTADRSIALVDFALRIRFAFIPLQPNYEVLRRYHTKTGLG----VEGLIETLMK 566
Query: 483 LNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
LN+ I + Y+IG ++F + + G+ + +W+M IEP + E+
Sbjct: 567 LNRRINDPN-----YVIGVSFFLR-ADLGEQLEDIWRMEIEPYIEEFF 608
Score = 72.8 bits (177), Expect = 6e-11, Method: Composition-based stats.
Identities = 36/89 (40%), Positives = 57/89 (64%), Gaps = 2/89 (2%)
Query: 149 RKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFV 207
R+ ++I+ +E+ +L G PGTGKTF+A+A+A+ + G SD + VQFHP+Y Y DF+
Sbjct: 371 RELERWIKAIERKGQAILYGPPGTGKTFLAKALARHLIGGSDGLVDLVQFHPAYAYEDFI 430
Query: 208 EGLRPVRDSDN-FGFELRNGVFKDFCAKA 235
+G+RP D++ + + G FC KA
Sbjct: 431 QGIRPQVDNEGILKYPVLPGRLLQFCQKA 459
>gi|86748715|ref|YP_485211.1| AAA_5 ATPase [Rhodopseudomonas palustris HaA2]
gi|86571743|gb|ABD06300.1| AAA_5 ATPase [Rhodopseudomonas palustris HaA2]
Length = 834
Score = 86.3 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 60/163 (36%), Positives = 91/163 (55%), Gaps = 14/163 (8%)
Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFK-DGFFVPE 427
+++V IIDEINR +ISK+FGEL ++P R R N ++ P+ D F VP
Sbjct: 622 ESFVLIIDEINRANISKVFGELITLLEPDKRIGR-------PNALKVRLPYSGDLFGVPA 674
Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAI 487
N++IIGTMN DRS+ +D A+RRRF + E+ P+ S+L + V+ ++ + +N+ I
Sbjct: 675 NLHIIGTMNTADRSIALLDTALRRRFEFRELMPD--PSLLGIVDGVDLSR-LLATINQRI 731
Query: 488 EETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
E + IG AYF D D++ + + PLL EY
Sbjct: 732 EYL--FDREHQIGHAYFISCKSRA-DIDEVMRCKVIPLLAEYF 771
>gi|30250447|ref|NP_842517.1| AAA ATPase superfamily [Nitrosomonas europaea ATCC 19718]
gi|30139288|emb|CAD86440.1| AAA ATPase superfamily [Nitrosomonas europaea ATCC 19718]
Length = 740
Score = 86.3 bits (212), Expect = 5e-15, Method: Composition-based stats.
Identities = 60/190 (31%), Positives = 94/190 (49%), Gaps = 25/190 (13%)
Query: 353 KQAAKKPSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNI 412
K A+K PS +V +I+EINRG+ ++IFGEL ++ G R + Y
Sbjct: 544 KAASKDPS--------SKFVVVIEEINRGNPAQIFGELLTLLEAGKRTPNEALELCY--- 592
Query: 413 IEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLD---- 468
D+D + +PEN+Y++GTMN DRS+ +D A+RRRF++V + P + D
Sbjct: 593 -PDADGKRRPVHIPENLYVVGTMNIADRSLALVDLALRRRFAFVGLEPRLGQVWRDWVVK 651
Query: 469 ----ELSCVEEAKETMERLNKAIEETEGLGSAYMIG-----PAYFRKLGENGDDFDKLWK 519
+ V + + + LN I LG + IG PA+ + G+ F ++ +
Sbjct: 652 ECAVDPGLVADIERRIAELNDQIAADARLGKQFRIGHSYVTPAHRLEAGDTKKWFLQVVE 711
Query: 520 MNIEPLLREY 529
I PLL EY
Sbjct: 712 TEIGPLLDEY 721
Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats.
Identities = 34/80 (42%), Positives = 48/80 (60%), Gaps = 5/80 (6%)
Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIA-KEMGCSDD-EMAFVQFHPSYDYTDFVEGL 210
+ ++ L KNL+L G PGTGKT++A+ +A MG DD ++ VQFHP+ Y DFV G
Sbjct: 465 RLLDRLRTKKNLILQGPPGTGKTWLAKRLAFALMGQKDDSKVRAVQFHPNLSYEDFVRGW 524
Query: 211 RPVRDSDNFGFELRNGVFKD 230
RP + L +GVF +
Sbjct: 525 RPTGEGK---LSLADGVFME 541
>gi|67922732|ref|ZP_00516235.1| ATPaseATPas [Crocosphaera watsonii WH 8501]
gi|67855442|gb|EAM50698.1| ATPaseATPas [Crocosphaera watsonii WH 8501]
Length = 506
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 63/174 (36%), Positives = 95/174 (54%), Gaps = 28/174 (16%)
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
+ IIDEINR ++S++FGEL + ++ YR E ++ Q F +PENVYI
Sbjct: 347 ILIIDEINRANLSQVFGELMYLLE--YREEEIQLAGSDQT-----------FKIPENVYI 393
Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSC----VEEAKETMERLNKA 486
IGTMN DRS+ +D A+RRRF+++ + PN D + + +E + LNK
Sbjct: 394 IGTMNTADRSIALVDHALRRRFAFIPIKPNYDILRKYHQKNSPNYDIESLINILIELNKT 453
Query: 487 IEETEGLGSAYMIGPAYFRKLGEN-GDDFDKLWKMNIEPLLREYLRGFRKTNEI 539
I + Y IG ++F L E+ D+ + +W M IEP L EY F +T++I
Sbjct: 454 INDPH-----YEIGVSFF--LTESLLDELEDIWTMEIEPYLEEYF--FDETDKI 498
Score = 75.1 bits (183), Expect = 1e-11, Method: Composition-based stats.
Identities = 75/255 (29%), Positives = 121/255 (47%), Gaps = 31/255 (12%)
Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDE--MAFVQFHPSYDYTDFVEGL 210
+YI+ L++ K+++ G+PGTGKT++A+ IA + S++ +QFHPSY Y DF++G+
Sbjct: 254 QYIKTLKRKKHIIFQGSPGTGKTYLAKHIANHLTSSENNGFYELIQFHPSYSYEDFIQGI 313
Query: 211 RPVRDSD-NFGFELRNGVFKDFCAKALQNFKDSE-------KPIERL---QKEGSVREIL 259
RP +D N + + G F +FC KA KD E I R Q G + +L
Sbjct: 314 RPQTSTDGNLEYSMIPGRFLNFCEKA----KDCEGMCILIIDEINRANLSQVFGELMYLL 369
Query: 260 EDFIEEAIDEGTKFKTSGTKNSFSIVENNERTITVEVPANEKTRLVKLSKAELIDLMDNN 319
E + EE I + +G+ +F I EN + + N R + L L
Sbjct: 370 E-YREEEI------QLAGSDQTFKIPEN----VYIIGTMNTADRSIALVDHALRRRF-AF 417
Query: 320 ISVKSGKDIQAHFHRKHRTQQD--SYIFVLYNIIKKQAAKKPSVEVSKVDTKNYVFIIDE 377
I +K DI +H+K+ D S I +L + K + VS T++ + +++
Sbjct: 418 IPIKPNYDILRKYHQKNSPNYDIESLINILIELNKTINDPHYEIGVSFFLTESLLDELED 477
Query: 378 INRGDISKIFGELFF 392
I +I E FF
Sbjct: 478 IWTMEIEPYLEEYFF 492
>gi|119486444|ref|ZP_01620502.1| putative restriction enzyme [Lyngbya sp. PCC 8106]
gi|119456346|gb|EAW37477.1| putative restriction enzyme [Lyngbya sp. PCC 8106]
Length = 508
Score = 85.9 bits (211), Expect = 6e-15, Method: Composition-based stats.
Identities = 60/187 (32%), Positives = 101/187 (54%), Gaps = 31/187 (16%)
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
V IIDEINR ++S++FGEL + ++ YR E+ + ++PF +P NVYI
Sbjct: 342 VLIIDEINRANLSQVFGELMYLLE--YRREK-------ICLAGSNEPFG----IPPNVYI 388
Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPN-------DTESMLDELSCVEEAKETMERLN 484
IGTMN DRS+ +D A+RRRFS++ ++PN + E +EE + ++ LN
Sbjct: 389 IGTMNTADRSIALVDHALRRRFSFITLSPNYDVLRNYHEHRFISEF--IEELIDILKYLN 446
Query: 485 KAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLR 544
+ I++ + +G ++F + + ++ + +W M IEP L EY F +I+ R
Sbjct: 447 QTIDDPH-----HELGISFFL-VDDLENNIEDIWTMEIEPYLEEY---FYDQRDIIKNFR 497
Query: 545 EAYVGEK 551
+ + K
Sbjct: 498 WSEIKNK 504
Score = 70.1 bits (170), Expect = 4e-10, Method: Composition-based stats.
Identities = 32/84 (38%), Positives = 52/84 (61%), Gaps = 1/84 (1%)
Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDDEMAFVQFHPSYDYTDFVEGLR 211
++++++ + K ++ G PGTGKTF+A+ IAK + G + VQFHP+Y Y DF+ G+R
Sbjct: 251 RWVKIINRKKQVIFQGPPGTGKTFIAKKIAKHLIGGTQGFSELVQFHPAYTYEDFMLGIR 310
Query: 212 PVRDSDNFGFELRNGVFKDFCAKA 235
P + + +G F +FC KA
Sbjct: 311 PDTKDGQLTYSMVSGRFLEFCKKA 334
>gi|126699711|ref|YP_001088608.1| putative restriction enzyme [Clostridium difficile 630]
gi|115251148|emb|CAJ68979.1| putative restriction enzyme [Clostridium difficile 630]
Length = 646
Score = 85.9 bits (211), Expect = 7e-15, Method: Composition-based stats.
Identities = 62/165 (37%), Positives = 97/165 (58%), Gaps = 14/165 (8%)
Query: 367 DTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVP 426
+++NYV IIDEINRG++SKIFGEL + E K T+ I K+ F +P
Sbjct: 430 ESENYVLIIDEINRGNVSKIFGELITLL------EDDKRLTKSNQTIVKLPYSKEKFSLP 483
Query: 427 ENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAKETMERLNK 485
N+YI+GTMN D+S+ +D A+RRRF++ E+ P+ D S++D + + ++ + +NK
Sbjct: 484 PNLYIVGTMNTSDKSIALLDIALRRRFNFEEIMPDYDLLSIVDGI----DIRKMLYTINK 539
Query: 486 AIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
IE ++IG AY + EN +D +++ I PLL+EY
Sbjct: 540 RIEFL--YDRDHVIGQAYLLAV-ENINDIVVVFRSKIIPLLQEYF 581
>gi|149369914|ref|ZP_01889765.1| 5-Methylcytosine-specific restriction enzyme B [unidentified
eubacterium SCB49]
gi|149356405|gb|EDM44961.1| 5-Methylcytosine-specific restriction enzyme B [unidentified
eubacterium SCB49]
Length = 1091
Score = 85.5 bits (210), Expect = 8e-15, Method: Composition-based stats.
Identities = 60/167 (35%), Positives = 89/167 (53%), Gaps = 20/167 (11%)
Query: 370 NYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KDGFFVPEN 428
NY IDEINRG++S IFGEL I+ R N +E P+ KD F VP N
Sbjct: 878 NYAIFIDEINRGNVSAIFGELITLIEKDKRAGA-------TNALEVQLPYSKDKFSVPIN 930
Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKETMERLNK 485
++I GTMN DRSVE +D A+RRRF++ E+ PN++ + ++ + E K +R+
Sbjct: 931 LHIYGTMNTADRSVEALDSALRRRFTFKELMPNESLLYDKQFEDFTLEEVLKTINDRIEI 990
Query: 486 AIEETEGLGSAYMIGPAYFRKLGENGD--DFDKLWKMNIEPLLREYL 530
++ +G +Y + E+GD ++K I PLL+EY
Sbjct: 991 LVDRDHTIGHSYFMAV-------ESGDTESLSIVFKDKIIPLLQEYF 1030
>gi|84390144|ref|ZP_00991406.1| GTPase subunit of restriction endonuclease-like [Vibrio splendidus
12B01]
gi|84376798|gb|EAP93673.1| GTPase subunit of restriction endonuclease-like [Vibrio splendidus
12B01]
Length = 829
Score = 84.0 bits (206), Expect = 2e-14, Method: Composition-based stats.
Identities = 61/173 (35%), Positives = 87/173 (50%), Gaps = 20/173 (11%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
Y IDEINRG+ISKIFGEL ++ R + + N+ PF+ VP NV
Sbjct: 571 YAMFIDEINRGNISKIFGELISLVETDKR--KDGAHPMSVNLAYSGRPFR----VPSNVD 624
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPN----DTESMLD-----ELSCVEEAKETME 481
IIGTMN DRS+ MD A+RRRF ++E+ P+ +++ ++D + E K +
Sbjct: 625 IIGTMNTADRSIALMDTALRRRFEFIEMMPDIRLFESDGLIDIGNNQHIDLAELLKSLND 684
Query: 482 RLNKAIEETEGLGSAYMIGPAYFRKLGENGDD----FDKLWKMNIEPLLREYL 530
R+ + LG A+ PAY N D+ K + I PLL+EY
Sbjct: 685 RIEALYDREHTLGHAFFF-PAYNAAKAGNHDEALSNLAKAFIGKIVPLLQEYF 736
>gi|77458885|ref|YP_348391.1| GTPase subunit of restriction endonuclease-like [Pseudomonas
fluorescens PfO-1]
gi|77382888|gb|ABA74401.1| GTPase subunit of restriction endonuclease-like [Pseudomonas
fluorescens PfO-1]
Length = 678
Score = 81.3 bits (199), Expect = 2e-13, Method: Composition-based stats.
Identities = 63/171 (36%), Positives = 89/171 (52%), Gaps = 18/171 (10%)
Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFK-DGFFVPE 427
+ Y +IDEINRG+ISKIFGEL I+ R +Y+ + + P+ F VP
Sbjct: 443 QQYAMVIDEINRGNISKIFGELITLIEADKRK-----GGEYE--VTLTLPYSGKSFSVPS 495
Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKE-TMERLNKA 486
NV +IGTMN DRS+ +D A+RRRF +VE+ P+ +L E+ V E ++RL A
Sbjct: 496 NVDVIGTMNTADRSLALVDTALRRRFEFVELMPD--PRVLTEIKVVSGEHEIQLDRLLTA 553
Query: 487 IE-ETEGL-GSAYMIGPAYFRKLGE-----NGDDFDKLWKMNIEPLLREYL 530
+ E L + IG AYF L + +++ I PLL EY
Sbjct: 554 LNARIEALYDREHTIGHAYFTPLKNLVPEARFEALVTIFRTRILPLLEEYF 604
>gi|73670717|ref|YP_306732.1| hypothetical protein Mbar_A3271 [Methanosarcina barkeri str.
Fusaro]
gi|72397879|gb|AAZ72152.1| conserved hypothetical protein [Methanosarcina barkeri str. Fusaro]
Length = 705
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 61/165 (36%), Positives = 92/165 (55%), Gaps = 17/165 (10%)
Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYR-GERGKVNTQYQNIIEDSDPFKDGFFVPE 427
K YV IIDEINR +ISK+FGEL ++ R G + ++ E++D F VP
Sbjct: 526 KKYVLIIDEINRANISKVFGELITLLEEDKRLGAKNELRVSIPG--EETD-----FGVPP 578
Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAI 487
N+Y+IGTMN D+S+ +D A+RRRF + P+ + +DELS + ++ +NK I
Sbjct: 579 NLYVIGTMNTADKSIAMIDIALRRRFEFRGYFPDYDK--VDELS-----GKILKHINKQI 631
Query: 488 EETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRG 532
E + + Y+IG YF + + F K+ + + PLL EY G
Sbjct: 632 YERKK-SADYLIGHGYFMNGDKTPETF-KVIENKVIPLLMEYFSG 674
>gi|20090962|ref|NP_617037.1| hypothetical protein MA2119 [Methanosarcina acetivorans C2A]
gi|19916046|gb|AAM05517.1| hypothetical protein (multi-domain) [Methanosarcina acetivorans
C2A]
Length = 700
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 65/189 (34%), Positives = 98/189 (51%), Gaps = 18/189 (9%)
Query: 346 VLYNIIKKQAAKK-PSVEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGK 404
+ Y I K+ S++ +V + YV IIDEINR +ISK+FGEL ++ R
Sbjct: 495 IFYRICKRAKQNYLQSLDQPEVPLERYVLIIDEINRANISKVFGELITLLEEDKR----- 549
Query: 405 VNTQYQNIIEDSDPFKD-GFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT 463
+N + S P ++ GF +P NVY+IGTMN D+S+ +D A+RRRF + P+
Sbjct: 550 --LGAKNELRLSIPGEETGFGIPPNVYVIGTMNTADKSIAMIDIALRRRFEFQGYFPD-- 605
Query: 464 ESMLDELSCVEEAKETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIE 523
S +D LS E + +N I + + Y+IG YF G+ + K+ + +
Sbjct: 606 YSKVDGLS-----GEILRYINNEIYNRKK-SADYLIGHGYFMN-GDEPPETSKVLQNKVI 658
Query: 524 PLLREYLRG 532
PLL EY G
Sbjct: 659 PLLMEYFSG 667
>gi|75198123|ref|ZP_00708193.1| COG1401: GTPase subunit of restriction endonuclease [Escherichia
coli HS]
gi|157069430|gb|ABV08685.1| putative ATPase family associated with various cellular activities
(AAA) [Escherichia coli HS]
Length = 691
Score = 80.9 bits (198), Expect = 2e-13, Method: Composition-based stats.
Identities = 66/174 (37%), Positives = 84/174 (48%), Gaps = 28/174 (16%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
Y IDEINRG+ISKIFGEL I+ R G N + D F VP NV
Sbjct: 446 YAIFIDEINRGNISKIFGELISLIEVDKRA--GMPNAMSLQLAYSGDHFS----VPGNVD 499
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAK-------ETMERL 483
IIG MN DRS+ MD A+RRRF +VE+ P +LS + EAK +E+L
Sbjct: 500 IIGAMNTADRSLALMDTALRRRFDFVEMMP--------DLSLLSEAKVKGIELESLLEKL 551
Query: 484 NKAIE----ETEGLGSAYMIGPAYFRKLGENGDDFDKL---WKMNIEPLLREYL 530
N IE LG A+ + G+ F +L ++ I PLL+EY
Sbjct: 552 NSRIEALYDREHTLGHAFFMPVKNALDAGDEEAAFKQLKIAFQKKIIPLLQEYF 605
>gi|10957435|ref|NP_051672.1| McrB-related protein [Deinococcus radiodurans R1]
gi|6460864|gb|AAF12568.1|AE001826_37 McrB-related protein [Deinococcus radiodurans R1]
Length = 969
Score = 80.5 bits (197), Expect = 3e-13, Method: Composition-based stats.
Identities = 63/195 (32%), Positives = 92/195 (47%), Gaps = 10/195 (5%)
Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPEN 428
+ +V IIDEINRG+ISKIFGEL ++ G R G + P VP++
Sbjct: 752 RPHVLIIDEINRGNISKIFGELITLLESGKR--TGAPEALTVTLPLSRRPLS----VPQS 805
Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPN-DTESMLDELSCVEEAKETMERLNKAI 487
+Y+IGTMN DRS+ +D A+RRRF + V P + +LD + ++ + +N I
Sbjct: 806 LYVIGTMNTADRSLTLLDAALRRRFVFRPVWPQPEVLPVLDLGGTALDLRKFLHVINDRI 865
Query: 488 EETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREY-LRGFRKTNEIMNQLREA 546
E L +IG AY L + I PLL EY + K E++ +A
Sbjct: 866 ERL--LSREQVIGHAYLLGLPATLGGVSSALRERILPLLEEYFFEDWSKIREVLGDESKA 923
Query: 547 YVGEKEEEHSNIPEL 561
+ + PEL
Sbjct: 924 EALQFIHRSGSGPEL 938
>gi|89891074|ref|ZP_01202582.1| putative GTPase subunit of restriction endonuclease [Flavobacteria
bacterium BBFL7]
gi|89516718|gb|EAS19377.1| putative GTPase subunit of restriction endonuclease [Flavobacteria
bacterium BBFL7]
Length = 989
Score = 79.7 bits (195), Expect = 5e-13, Method: Composition-based stats.
Identities = 67/207 (32%), Positives = 102/207 (49%), Gaps = 21/207 (10%)
Query: 364 SKVDTKN-YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KD 421
+K D++N Y IDEINRG++S IFGEL I+ R +N + P+ K
Sbjct: 763 AKNDSENRYAIFIDEINRGNVSAIFGELITLIETDKR-------KGCKNELAIKLPYSKK 815
Query: 422 GFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT---ESMLDELSCVEEAKE 478
F VP N+ I GTMN DRSVE +D A+RRRF + E+ PN ++++ E +
Sbjct: 816 EFSVPSNLDIYGTMNTADRSVEALDTALRRRFEFKEMMPNYNVIENEKVNDIKLSEVLET 875
Query: 479 TMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNE 538
ER+ I+ +G +Y +G KL ++ I PLL+EY G +
Sbjct: 876 INERIELLIDRDHTIGHSYFVGVDTVEKLANAFNN-------KIVPLLQEYFYG--DYGK 926
Query: 539 IMNQLREAYVGEKEEEHSNIPELTDEN 565
I L + +V +KE + + + +N
Sbjct: 927 IGLVLGKGFVEKKENKQISFADFKYDN 953
>gi|113477076|ref|YP_723137.1| ATPase associated with various cellular activities, AAA_5
[Trichodesmium erythraeum IMS101]
gi|110168124|gb|ABG52664.1| ATPase associated with various cellular activities, AAA_5
[Trichodesmium erythraeum IMS101]
Length = 539
Score = 78.2 bits (191), Expect = 1e-12, Method: Composition-based stats.
Identities = 55/166 (33%), Positives = 89/166 (53%), Gaps = 28/166 (16%)
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
V IIDEINR ++S++FGEL + ++ YR + + + F +P+NV I
Sbjct: 371 VLIIDEINRANLSQVFGELMYLLE--YRDAKIPLAGS-----------AELFSIPKNVRI 417
Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELS------CVEEAKETMERLNK 485
IGTMN DRS+ +D A+RRRF+++ ++P E +L VE + +E +N+
Sbjct: 418 IGTMNTADRSIALVDHALRRRFAFITLSPK-YEILLQYYKEIETNFSVEGLTQLLEAVNQ 476
Query: 486 AIEETEGLGSAYMIGPAYFRKLGEN-GDDFDKLWKMNIEPLLREYL 530
I + Y +G ++F L +N ++ +W+M IEP L EY
Sbjct: 477 EINDPN-----YQVGVSFF--LRKNIAEEIPDIWQMEIEPYLEEYF 515
Score = 63.5 bits (153), Expect = 3e-08, Method: Composition-based stats.
Identities = 30/87 (34%), Positives = 47/87 (54%), Gaps = 1/87 (1%)
Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSDDEM-AFVQFHPSYDYTDFVEGLR 211
++I + + K + G PGTGKTF++Q +A+ + D +QFH +Y Y DF++G+R
Sbjct: 280 QWIRAINRKKQAIFQGPPGTGKTFLSQKLAQHLISRGDGFWELIQFHSAYTYEDFIQGIR 339
Query: 212 PVRDSDNFGFELRNGVFKDFCAKALQN 238
P + + G F FC KA N
Sbjct: 340 PQSQDGKLTYPVVPGRFLQFCQKAALN 366
>gi|75187706|ref|ZP_00700973.1| COG1401: GTPase subunit of restriction endonuclease [Escherichia
coli E24377A]
gi|157077307|gb|ABV17015.1| putative ATPase family associated with various cellular activities
(AAA) [Escherichia coli E24377A]
Length = 685
Score = 77.8 bits (190), Expect = 2e-12, Method: Composition-based stats.
Identities = 64/171 (37%), Positives = 84/171 (49%), Gaps = 22/171 (12%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
Y IDEINRG+ISKIFGEL I+ R G N + D F VP NV
Sbjct: 440 YAIFIDEINRGNISKIFGELISLIEVDKRA--GMPNAMSLQLSYSGDYFS----VPANVD 493
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVE----EAKETMERLNKA 486
IIG MN DRS+ +D A+RRRF +VE+ P+ L LS + E + +E+LN
Sbjct: 494 IIGAMNTADRSLALLDTALRRRFDFVEMMPD-----LSLLSGAKVKGIELESLLEKLNSR 548
Query: 487 IE----ETEGLGSAYMIGPAYFRKLGENGDDFDKL---WKMNIEPLLREYL 530
IE LG A+ + G+ F +L ++ I PLL+EY
Sbjct: 549 IEALYDREHTLGHAFFMPVKNALDTGDEETAFKQLKIAFQKKIIPLLQEYF 599
>gi|88602580|ref|YP_502758.1| ATPase associated with various cellular activities, AAA_5
[Methanospirillum hungatei JF-1]
gi|88188042|gb|ABD41039.1| ATPase associated with various cellular activities, AAA_5
[Methanospirillum hungatei JF-1]
Length = 999
Score = 77.0 bits (188), Expect = 3e-12, Method: Composition-based stats.
Identities = 52/171 (30%), Positives = 85/171 (49%), Gaps = 17/171 (9%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVY 430
+ +IDEINRGDIS+IFGEL + E+ K I + F +P N++
Sbjct: 779 FYLVIDEINRGDISRIFGELITLL------EKDKRLLAPHEITTKLPSSRTRFGIPPNLF 832
Query: 431 IIGTMNDIDRSVENMDFAMRRRFSWVEVTPN----------DTESMLDELSCVEEAKETM 480
+IGTMN D+S+ +D A+RRRF ++E+ P+ D ES+L+ S T+
Sbjct: 833 LIGTMNTADKSIALIDIALRRRFGFIEMMPDYDLLYRTLSSDDESLLEVYSIAIALLRTI 892
Query: 481 -ERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYL 530
+R+ + + +G ++++ R + + +W I PLL EY
Sbjct: 893 NQRILEEHDREHQIGHSFLLKLKDARTRDQAISELSMIWYHEIIPLLHEYF 943
>gi|93005767|ref|YP_580204.1| ATPase associated with various cellular activities, AAA_5
[Psychrobacter cryohalolentis K5]
gi|92393445|gb|ABE74720.1| ATPase associated with various cellular activities, AAA_5
[Psychrobacter cryohalolentis K5]
Length = 810
Score = 75.5 bits (184), Expect = 1e-11, Method: Composition-based stats.
Identities = 52/174 (29%), Positives = 88/174 (50%), Gaps = 23/174 (13%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDG--FFVPEN 428
YV +I+EINRG+ +++FGE+ ++ R + Y+ DG ++P N
Sbjct: 626 YVIVIEEINRGNPAQVFGEMLTLLETDKRTPDEALELSYRKF--------DGERVYIPSN 677
Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLD--------ELSCVEEAKETM 480
+Y+IGTMN DRS+ +D A+RRRF+++++ P + D + + + +
Sbjct: 678 LYVIGTMNIADRSLALVDLALRRRFAFIDLEPTLGKPWHDWVQSKNGIDSTILNAIDSRI 737
Query: 481 ERLNKAIEETEGLGSAYMIGPAYFR-KLGENGDD----FDKLWKMNIEPLLREY 529
LN+ I LG+ + IG +Y +G N D F ++ + I PLL EY
Sbjct: 738 RALNEDIAADTSLGAQFQIGHSYVTPAVGMNITDAKEWFSEVVQTEIGPLLDEY 791
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 30/68 (44%), Positives = 41/68 (60%), Gaps = 2/68 (2%)
Query: 147 PTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIA-KEMGCSDD-EMAFVQFHPSYDYT 204
P K ++ KNL+L G PGTGKT++A+ +A MG DD ++ VQFHP+ Y
Sbjct: 531 PKAKIEMILKRFRAKKNLILQGPPGTGKTWLAKRLAFALMGQRDDSKIRAVQFHPNLSYE 590
Query: 205 DFVEGLRP 212
DF+ G RP
Sbjct: 591 DFIRGWRP 598
>gi|91216791|ref|ZP_01253755.1| GTPase subunit of restriction endonuclease-like protein
[Psychroflexus torquis ATCC 700755]
gi|91184952|gb|EAS71331.1| GTPase subunit of restriction endonuclease-like protein
[Psychroflexus torquis ATCC 700755]
Length = 641
Score = 74.3 bits (181), Expect = 2e-11, Method: Composition-based stats.
Identities = 63/175 (36%), Positives = 90/175 (51%), Gaps = 21/175 (12%)
Query: 364 SKVDTKN-YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPF-KD 421
+ +D N Y IDEINRG++S IFGEL I+ R +G N + P+ K+
Sbjct: 415 AAIDPHNRYAIFIDEINRGNVSAIFGELITLIETDKR--KGAANEMRITL-----PYSKN 467
Query: 422 GFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESM----LDELSCVEEAK 477
F VP N+ I GTMN DRSVE +D A+RRRF + E+ P D E + +D + + K
Sbjct: 468 IFSVPLNLDIYGTMNTADRSVEALDTALRRRFEFKEMMP-DLEVIENEEVDGILLTDVLK 526
Query: 478 ETMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRG 532
ER+ I+ +G +Y + ++L D F+ I PLL+EY G
Sbjct: 527 TINERIELLIDRDHTIGHSYFVDVDTAQRL---ADAFNN----KIVPLLQEYFYG 574
>gi|93005083|ref|YP_579520.1| ATPase associated with various cellular activities, AAA_5
[Psychrobacter cryohalolentis K5]
gi|92392761|gb|ABE74036.1| ATPase associated with various cellular activities, AAA_5
[Psychrobacter cryohalolentis K5]
Length = 498
Score = 72.0 bits (175), Expect = 1e-10, Method: Composition-based stats.
Identities = 46/135 (34%), Positives = 66/135 (48%), Gaps = 17/135 (12%)
Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPEN 428
+ Y +IDEINR ++S++FGEL I+P R G N ++ F VP N
Sbjct: 246 QRYAMLIDEINRANVSRVFGELLSLIEPDKRA--GTPNAMTVSLAYSGRAFS----VPAN 299
Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTP----------NDTESMLDELSCVEEAKE 478
V I TMN D S+ +D A+RRRF ++ P N ++DE C+ AK
Sbjct: 300 VDIYATMNTQDHSLAPLDMALRRRFRFINCPPQPELLPIINLNKGLEIVDEAECINLAK- 358
Query: 479 TMERLNKAIEETEGL 493
+ LN I +T G+
Sbjct: 359 VLTGLNHRISQTLGI 373
>gi|148653828|ref|YP_001280921.1| GTPase subunit of restriction endonuclease-like protein
[Psychrobacter sp. PRwf-1]
gi|148572912|gb|ABQ94971.1| GTPase subunit of restriction endonuclease-like protein
[Psychrobacter sp. PRwf-1]
Length = 481
Score = 67.0 bits (162), Expect = 3e-09, Method: Composition-based stats.
Identities = 52/195 (26%), Positives = 82/195 (42%), Gaps = 25/195 (12%)
Query: 371 YVFIIDEINRGDISKIFGELFFAIDPGYRGERG---KVNTQYQNIIEDSDPFKDGFFVPE 427
Y +IDEINR + +++FGEL I+P R V Y F VP
Sbjct: 225 YAMLIDEINRANTAQVFGELMSVIEPSKRAGGATPMSVRLAYSG---------RQFMVPS 275
Query: 428 NVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT------ESMLDELSCVEEAKETME 481
NV I TMN D S+ +D A RRRF +V P+ + + E+ + +
Sbjct: 276 NVDIYATMNTQDHSLAVLDMAFRRRFDFVTCYPDASLLSVLKDDAGKEVDLAQMMLSINQ 335
Query: 482 RLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMN 541
RL E LG +Y +G R+L + +L++ I P + ++ R ++
Sbjct: 336 RLTALCGEQAQLGQSYFMGIDDIRQLAK------RLYR-QIVPQIMAFISLHRGEAYLLQ 388
Query: 542 QLREAYVGEKEEEHS 556
L + G+ +S
Sbjct: 389 SLHQILYGDNSVSYS 403
>gi|71064806|ref|YP_263533.1| probable endonuclease [Psychrobacter arcticus 273-4]
gi|71037791|gb|AAZ18099.1| probable endonuclease [Psychrobacter arcticus 273-4]
Length = 498
Score = 65.9 bits (159), Expect = 8e-09, Method: Composition-based stats.
Identities = 49/144 (34%), Positives = 72/144 (50%), Gaps = 21/144 (14%)
Query: 369 KNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPEN 428
+ Y +IDEINR ++S++FGEL I+P R G N N+ F VP N
Sbjct: 246 QRYAMLIDEINRANVSRVFGELLSLIEPDKR--VGTANAMTVNLAYSGRTFG----VPAN 299
Query: 429 VYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESM----LDELSCVEEAKETMER-- 482
V I TMN D S+ +D A+RRRF ++ P+ E + L + S + A E+++
Sbjct: 300 VDIYATMNTQDHSLAPLDMALRRRFRFINC-PSQPELLPIISLSKASKIPNAAESIDLAK 358
Query: 483 ----LNKAIEETEG----LGSAYM 498
LN I +T G LG A++
Sbjct: 359 VLTGLNLRISQTLGIEAQLGHAFL 382
>gi|148653161|ref|YP_001280254.1| ATPase associated with various cellular activities, AAA_5
[Psychrobacter sp. PRwf-1]
gi|148572245|gb|ABQ94304.1| ATPase associated with various cellular activities, AAA_5
[Psychrobacter sp. PRwf-1]
Length = 655
Score = 65.5 bits (158), Expect = 1e-08, Method: Composition-based stats.
Identities = 37/113 (32%), Positives = 65/113 (57%), Gaps = 10/113 (8%)
Query: 352 KKQAAKKPSVEVSKVDTKN----YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNT 407
K + P +E+ K N YV +I+EINRG+ ++IFGE+ ++ R +
Sbjct: 519 KLELVDGPFMEMIKTAIANPNSKYVLVIEEINRGNPAQIFGEMLTLLETDKRTPEEALEL 578
Query: 408 QYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTP 460
Y+ +E + ++P N+++IGTMN DRS+ +D A+RRRF+++++ P
Sbjct: 579 SYK--MEKGERV----YIPSNLFVIGTMNIADRSLALVDLALRRRFAFIDLEP 625
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 35/88 (39%), Positives = 50/88 (56%), Gaps = 5/88 (5%)
Query: 153 KYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEM-GCSDD-EMAFVQFHPSYDYTDFVEGL 210
+ ++ L KNL+L G PGTGKT+ A+ +A + G DD ++ VQFHP+ Y DF+ G
Sbjct: 453 RILKRLRTKKNLILQGPPGTGKTWRAKRLAFALIGQKDDSKIRAVQFHPNLSYEDFIRGW 512
Query: 211 RPVRDSDNFGFELRNGVFKDFCAKALQN 238
RP S EL +G F + A+ N
Sbjct: 513 RP---SGAGKLELVDGPFMEMIKTAIAN 537
>gi|1149676|emb|CAA60208.1| mcrB [Clostridium perfringens]
Length = 98
Score = 62.4 bits (150), Expect = 8e-08, Method: Composition-based stats.
Identities = 43/107 (40%), Positives = 59/107 (55%), Gaps = 14/107 (13%)
Query: 385 KIFGELFFAIDPGYR-GERG--KVNTQYQNIIEDSDPFKDGFFVPENVYIIGTMNDIDRS 441
KIFGEL I+ R GE+ KV Y N + F VP+N+YI+GTMN DRS
Sbjct: 1 KIFGELITLIEDDKRLGEKNQLKVTLPYSN---------ESFGVPKNLYILGTMNTADRS 51
Query: 442 VENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKETMERLNKAIE 488
+ +D A+RRRF + E P E +L E +C +E + +N+ IE
Sbjct: 52 IALLDTALRRRFEFFEYMPK--EDLLPEDACGINLREFLRVINERIE 96
>gi|87125171|ref|ZP_01081018.1| AAA ATPase superfamily protein [Synechococcus sp. RS9917]
gi|86167491|gb|EAQ68751.1| AAA ATPase superfamily protein [Synechococcus sp. RS9917]
Length = 123
Score = 62.4 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 32/98 (32%), Positives = 54/98 (55%), Gaps = 10/98 (10%)
Query: 415 DSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTE---------S 465
D D VPEN+++IGTMN DRS+ +D +RRRF+++++ P+ +E
Sbjct: 7 DVDGVNRPVHVPENLFVIGTMNTADRSLAMVDLTLRRRFAFIDLEPSRSEPWGTWVVNQK 66
Query: 466 MLDELSCVEEAKETMERLNKAIEETEGLGSAYMIGPAY 503
++E S E + +++LN I +G A+ IG +Y
Sbjct: 67 QMEE-SAAREIGQRLKQLNAIISADSRIGQAFCIGHSY 103
>gi|94311600|ref|YP_584810.1| ATPase associated with various cellular activities, AAA_5
[Ralstonia metallidurans CH34]
gi|93355452|gb|ABF09541.1| ATPase associated with various cellular activities, AAA_5
[Ralstonia metallidurans CH34]
Length = 303
Score = 62.4 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 46/178 (25%), Positives = 82/178 (46%), Gaps = 20/178 (11%)
Query: 372 VFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSDPFKDGFFVPENVYI 431
V +IDE++R D+ ++FGE ++ RG ++ + I P N+ +
Sbjct: 138 VLVIDELSRTDVVRVFGEALTYLEKSKRGLSFQLASGRTTSI------------PNNLIM 185
Query: 432 IGTMNDIDRSVENMDFAMRRRFSWVEVTPNDT--ESMLDELSCVEEAKETMERLNKAIEE 489
+ TMN DR VE MD A+ RRF+ + + P+ E +L + EE + + R + +
Sbjct: 186 LATMNPWDRGVEEMDLALERRFARISIEPDPQALEIILSRSALTEERRLRVMRFFQTL-- 243
Query: 490 TEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLRGFRKTNEIMNQLREAY 547
+ IG AYF +N D +LW L + R +++ E + ++R +
Sbjct: 244 YRHVNPLCRIGHAYFLT-AQNDDSLKRLWD---NQLSFHFERILKRSPEELERIRNGW 297
>gi|77977894|ref|ZP_00833332.1| COG1401: GTPase subunit of restriction endonuclease [Yersinia
intermedia ATCC 29909]
Length = 651
Score = 62.4 bits (150), Expect = 9e-08, Method: Composition-based stats.
Identities = 61/191 (31%), Positives = 98/191 (51%), Gaps = 29/191 (15%)
Query: 359 PSVEVSKVDTKN----YVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIE 414
P V V K N YV II+EINRG+ ++IFGE ++ R + Y E
Sbjct: 452 PFVNVIKTAINNPVAKYVVIIEEINRGNPAQIFGETLTLMEADKRTPTEALALSYS---E 508
Query: 415 DSDPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESM-------- 466
++D + ++PEN+YIIGTMN DRS+ +D A+RRRF+++++ P ++
Sbjct: 509 NTD---EKIYIPENLYIIGTMNIADRSLALLDLALRRRFAFIDLKPAFNDAWKNWVNHKF 565
Query: 467 ---LDELSCVEEAKETMERLNKAIEETEGLGSAYMIG-----PAYFRKLGENGDDFDKLW 518
LD L+ +E + LN+ + + LG + IG PA +++ E ++++
Sbjct: 566 AIDLDLLAIIE---SRLTALNEILAKDVTLGPQFCIGHSYVTPATGQQINEAQTWYEQVV 622
Query: 519 KMNIEPLLREY 529
I PLL EY
Sbjct: 623 DTEICPLLAEY 633
>gi|111020925|ref|YP_703897.1| probable 5-methylcytosine-specific restriction enzyme B
[Rhodococcus sp. RHA1]
gi|110820455|gb|ABG95739.1| probable 5-methylcytosine-specific restriction enzyme B
[Rhodococcus sp. RHA1]
Length = 249
Score = 61.6 bits (148), Expect = 1e-07, Method: Composition-based stats.
Identities = 33/93 (35%), Positives = 50/93 (53%), Gaps = 7/93 (7%)
Query: 151 YAKYIELLEQNKNLVLTGAPGTGKTFMAQAIAKEMGCSD---DEMAFVQFHPSYDYTDFV 207
+ + IE ++ KN++ G PGTGKT++A+ + + C++ D M +QFHPS Y DFV
Sbjct: 55 WKRMIEAVKSKKNIIWQGPPGTGKTWLARRLGWVL-CNEPHSDRMTLLQFHPSMSYEDFV 113
Query: 208 EGLRPVRDSDNFGFELRNGVFKDFCAKALQNFK 240
G RP D L +G A Q+F+
Sbjct: 114 RGFRPGSDGK---LTLIDGPLLTAAQNARQDFR 143
>gi|91976450|ref|YP_569109.1| ATPase associated with various cellular activities, AAA_5
[Rhodopseudomonas palustris BisB5]
gi|91682906|gb|ABE39208.1| ATPase associated with various cellular activities, AAA_5
[Rhodopseudomonas palustris BisB5]
Length = 450
Score = 60.8 bits (146), Expect = 2e-07, Method: Composition-based stats.
Identities = 50/173 (28%), Positives = 78/173 (45%), Gaps = 23/173 (13%)
Query: 362 EVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKVNTQYQNIIEDSD---P 418
E++K +T V +IDE +R D +++ GE V T + + D D P
Sbjct: 229 EIAKSETAPVVLVIDEFSRTDPARVLGE---------------VMTYMEGSLRDKDFYLP 273
Query: 419 FKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDELSCVEEAKE 478
+P N+ I TMN DRSV+ +D AM RR++ V + P D + D L A E
Sbjct: 274 SGRRVRIPRNLIFIATMNPEDRSVDEIDAAMERRWAKVGLKP-DVRKLRDFL-VNNRADE 331
Query: 479 TMERLNKAIEETEGLGSAYMIGPAYFRKLGENGDDFDKLWKMNIEPLLREYLR 531
M + ++ GL IG A+FR + + +LW + + R+ R
Sbjct: 332 LM--MGPTVDLFLGLQKHMEIGHAFFRTVKDPA-GLSRLWNNQLSYVFRKRFR 381
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 30/75 (40%), Positives = 44/75 (58%), Gaps = 1/75 (1%)
Query: 139 INSVRNAEPTRKYAKYIELLEQNKNLVLTGAPGTGKTFMAQAIA-KEMGCSDDEMAFVQF 197
++ + + +P + + ++ ++LTGAPGTGK+F A+ IA K G + VQF
Sbjct: 137 VSQIDDEDPILAQVRQLVEIDGWGGVLLTGAPGTGKSFYAREIAIKLTGGDRRRIREVQF 196
Query: 198 HPSYDYTDFVEGLRP 212
HPSY Y DFVEG P
Sbjct: 197 HPSYQYEDFVEGYVP 211
>gi|116217130|ref|ZP_01482944.1| hypothetical protein VchoR_02001119 [Vibrio cholerae RC385]
Length = 379
Score = 57.0 bits (136), Expect = 3e-06, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 24/160 (15%)
Query: 362 EVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR-----GERGKVNTQYQNIIEDS 416
E +K + + IIDEINRG ++FG AI+ R G+R + TQ+ +++
Sbjct: 126 EHAKGANRAALLIIDEINRGPAVQVFGGAIVAIESDKRLASDGGKRAE--TQFFEMLDPV 183
Query: 417 DPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPND-------------T 463
+ +P ++YI+ MN D SVE +D A RR+ + + P++
Sbjct: 184 SGDVIEYALPHDLYILAAMNQADASVEPLDVAFLRRWEPIRLEPDEAALRTFYGLGAKGV 243
Query: 464 ESMLDELSCVEEAKETMERLNKAIEETEGLGSAYMIGPAY 503
++ DE + V +A E R AI LG GP +
Sbjct: 244 NALPDEPAGVNDALEASVRAWSAINSQIALGR----GPKF 279
>gi|15611234|ref|NP_222885.1| putative restriction enzyme [Helicobacter pylori J99]
gi|4154679|gb|AAD05745.1| putative restriction enzyme [Helicobacter pylori J99]
Length = 448
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 12/109 (11%)
Query: 371 YVFIIDEINRGDISKIFGELFFAID------PGYR---GERGKVNTQYQNIIEDSDPFKD 421
+V +IDEINRG++ IFGE+F +D G++ E NT NI+ +
Sbjct: 230 HVLVIDEINRGNVPAIFGEIFQLLDRLKHDKDGFKKGSSEYAINNTDIANIVHNDK--NA 287
Query: 422 GFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPNDTESMLDEL 470
+P N++I+ TMN D++V +D A +RRFS +++ N E++ D+
Sbjct: 288 SIRIPSNLWIVATMNTSDQNVFTLDTAFQRRFS-MQLVENSFENVDDDF 335
>gi|150421004|gb|EDN13289.1| GTPase subunit of restriction endonuclease [Vibrio cholerae RC385]
Length = 384
Score = 57.0 bits (136), Expect = 4e-06, Method: Composition-based stats.
Identities = 45/160 (28%), Positives = 73/160 (45%), Gaps = 24/160 (15%)
Query: 362 EVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYR-----GERGKVNTQYQNIIEDS 416
E +K + + IIDEINRG ++FG AI+ R G+R + TQ+ +++
Sbjct: 131 EHAKGANRAALLIIDEINRGPAVQVFGGAIVAIESDKRLASDGGKRAE--TQFFEMLDPV 188
Query: 417 DPFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPND-------------T 463
+ +P ++YI+ MN D SVE +D A RR+ + + P++
Sbjct: 189 SGDVIEYALPHDLYILAAMNQADASVEPLDVAFLRRWEPIRLEPDEAALRTFYGLGAKGV 248
Query: 464 ESMLDELSCVEEAKETMERLNKAIEETEGLGSAYMIGPAY 503
++ DE + V +A E R AI LG GP +
Sbjct: 249 NALPDEPAGVNDALEASVRAWSAINSQIALGR----GPKF 284
>gi|109672659|ref|ZP_01374895.1| restriction endonuclease [Campylobacter concisus 13826]
gi|112801576|gb|EAT98920.1| polysulfide reductase chain C (Sulfur reductase chain C)
[Campylobacter concisus 13826]
Length = 412
Score = 56.2 bits (134), Expect = 6e-06, Method: Composition-based stats.
Identities = 34/92 (36%), Positives = 50/92 (54%), Gaps = 2/92 (2%)
Query: 365 KVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERGKV--NTQYQNIIEDSDPFKDG 422
K T+ Y+ +IDEINRG+ IFGE+F +D G V N I+ +
Sbjct: 191 KNPTQKYLLVIDEINRGNAPAIFGEIFQLLDRDKDGNSVYVINNENIAKIVYGKNNTDKP 250
Query: 423 FFVPENVYIIGTMNDIDRSVENMDFAMRRRFS 454
+P N++II TMN D++V +D A +RRF+
Sbjct: 251 IKIPSNLWIIATMNTSDQNVFTLDTAFQRRFT 282
>gi|30019094|ref|NP_830725.1| Type II restriction-modification system restriction subunit
[Bacillus cereus ATCC 14579]
gi|29894637|gb|AAP07926.1| Type II restriction-modification system restriction subunit
[Bacillus cereus ATCC 14579]
Length = 578
Score = 55.8 bits (133), Expect = 7e-06, Method: Composition-based stats.
Identities = 36/105 (34%), Positives = 53/105 (50%), Gaps = 4/105 (3%)
Query: 361 VEVSKVDTKNYVFIIDEINRGDISKIFGELFFAIDPGYRGERG---KVNTQYQNIIEDSD 417
V K N+V II+EINR + + +FG++F +D GE N N +
Sbjct: 363 VNALKYPKSNFVIIIEEINRANAAAVFGDVFQLLDRKDDGESEYTITFNADVTNYLRKEG 422
Query: 418 PFKDGFFVPENVYIIGTMNDIDRSVENMDFAMRRRFSWVEVTPND 462
F +P+N+YI TMN D+ V +D A +RR+S+ E P D
Sbjct: 423 IFDLQIKIPKNLYIWATMNSADQGVTPLDTAFKRRWSF-EYMPID 466
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.316 0.135 0.389
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,149,402,561
Number of Sequences: 5470121
Number of extensions: 95481087
Number of successful extensions: 318449
Number of sequences better than 1.0e-05: 125
Number of HSP's better than 0.0 without gapping: 33
Number of HSP's successfully gapped in prelim test: 92
Number of HSP's that attempted gapping in prelim test: 317929
Number of HSP's gapped (non-prelim): 294
length of query: 565
length of database: 1,894,087,724
effective HSP length: 138
effective length of query: 427
effective length of database: 1,139,211,026
effective search space: 486443108102
effective search space used: 486443108102
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 132 (55.5 bits)