Reference SNP(refSNP) Cluster Report: rs10510203

Reference SNP(refSNP) Cluster Report: rs10510203

refSNP ID: rs10510203
Organism:	human (Homo sapiens)
Molecule Type:	HASH(0x1191b70)
Created/Updated in build:	119/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/C
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss111090324 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs10510203 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss14907525	PERLEGEN\|PS02320325	fwd/T	A/C	ggcgttatatcactgtcattaccacttctg	taaatggagacctctagtttgcttttataa	11/13/03	04/07/04	119	Genomic	unknown
ss24251159	PERLEGEN\|afd2320325	fwd/T	A/C	ggcgttatatcactgtcattaccacttctg	taaatggagacctctagtttgcttttataa	08/10/04	09/13/04	123	Genomic	unknown
ss66009122	AFFY\|SNP_A-1754357	rev/B	G/T	aaagcaaactagaggtctccattta	cagaagtggtaatgacagtgatata	10/26/06	10/26/06	127	Genomic	unknown
ss66233914	AFFY\|SNP_A-4263277	rev/B	G/T	tagaggtctccattta	cagaagtggtaatgac	10/27/06	03/31/08	127	Genomic	unknown
ss66730714	ILLUMINA\|HumanHap300v1.1_rs10510203	fwd/B	A/C	ggcgttatatcactgtcattaccacttctg	taaatggagacctctagtttgcttttataa	11/09/06	11/09/06	127	Genomic	unknown
ss66892432	ILLUMINA\|HumanHap550v1.1_rs10510203	fwd/T	A/C	ggcgttatatcactgtcattaccacttctg	taaatggagacctctagtttgcttttataa	11/14/06	11/14/06	127	Genomic	unknown
ss66997733	ILLUMINA\|HumanHap650Yv1.0_rs10510203	fwd/T	A/C	ggcgttatatcactgtcattaccacttctg	taaatggagacctctagtttgcttttataa	11/14/06	11/14/06	127	Genomic	unknown
ss76379788	AFFY\|AFFY_6_1M_SNP_A-4263277	rev/B	G/T	tagaggtctccattta	cagaagtggtaatgac	08/28/07	08/30/07	129	Genomic	unknown
ss84969831	KRIBB_YJKIM\|KHS862661	fwd/T	A/C	ggcgttatatcactgtcattaccacttctg	taaatggagacctctagtttgcttttataa	12/04/07	12/08/07	130	Genomic	unknown

Fasta sequence (Legend)

 GCCTCCTGGA GACTAAAACA ACTTGAGGCT AAATCTACCT TTCCAAGGGT GGAAAATTTA
 TTCAGATAAT GTTTGAGAAT TCATATATGC CACCATAGGA TAAAAACTAA AAGGTAGAAA
 TCTCACACTT TTCCTTCTAC CTCCCTCCCA TACTGCCCAA CCAGGTTCCA GGCGTTATAT
 CACTGTCATT ACCACTTCTG
 M
 TAAATGGAGA CCTCTAGTTT GCTTTTATAA ATCAAACTTG TGATTTTGGC AAATGAATGC
 CAGCCTTTTC ATCCAGCTCC TAGAGGTAGG ACATCCTATG GTAGACACAA ACCCTGGGGC
 CTTGTGGAAG CGTTTAAATG GCTGAAGCAT CAAGGAAGCC TTCTGAGAAA TGTTTAAGAG
 TTAACCAGGT CAAGGAGATA

GeneView

GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs10510203 maps exactly once on NCBI human chromosome 3

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
3	NW_001838876.2	9402800	939634	minus	G	alt_assembly_8	HuRef	HuRef	view	100
3	NW_921651.1	940366	940366	plus	C	alt_assembly_1	Celera	Celera	view	100
3	NT_022517.17	940944	975944	plus	C	ref_assembly	reference	reference	view	100

NCBI Resource Links

Submitter-Referenced
GenBank
NC_000003.6

dbSNP Blast Analysis

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/C	C/C	HWP	A	C
ss14907525	AfAm	African American	12	IG			1.000			1.000

	Caucasian	European	24	IG	0.083	0.250	0.667	0.403	0.208	0.792

	Asian	Asian	10	IG		0.200	0.800	1.000	0.100	0.900

	CEPH	European	12	IG			1.000			1.000

	PDpanel	Global	48	IG	0.042	0.167	0.792	0.251	0.125	0.875

	HapMap-CEU	European	120	IG	0.100	0.300	0.600	0.150	0.250	0.750

	HapMap-HCB	Asian	90	IG	0.022	0.111	0.867	0.150	0.078	0.922

	HapMap-JPT	Asian	90	IG		0.156	0.844	0.584	0.078	0.922

	HapMap-YRI	Sub-Saharan African	120	IG		0.167	0.833	0.527	0.083	0.917

ss24251159	AFD_EUR_PANEL	European	48	IG	0.167	0.458	0.375	1.000	0.396	0.604

	AFD_AFR_PANEL	African American	44	IG		0.182	0.818	0.655	0.091	0.909

	AFD_CHN_PANEL	Asian	48	IG		0.125	0.875	0.752	0.062	0.938

ss66233914	HapMap-CEU	European	118	GF	0.102	0.305	0.593		0.254	0.746

	HapMap-HCB	Asian	90	GF	0.022	0.111	0.867		0.078	0.922

	HapMap-JPT	Asian	90	GF		0.156	0.844		0.078	0.922

	HapMap-YRI	Sub-Saharan African	120	GF		0.167	0.833		0.083	0.917

Summary	Average Het.+/- std err:	Individual Count	Founders Count	Individual Overlap	Genotype Conflict
	0.233+/-0.249	379	306	275	0

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .