858 = srlA (187) =
721 = PM1971 (184) =
616 = ZsrlA.1 (131) =
395 = BH0771 (182) =
315 = mll3614 (230) =
219 = ZsrlA.2 (44) =
| 6 proteins |
G | COG3730 | Phosphotransferase system sorbitol-specific component IIC | Help |
|---|
187 letters
BLASTP 2.2.2 [Dec-14-2001]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= srlA
(187 letters)
Database: xyva
108,091 sequences; 33,061,072 total letters
Score E
Sequences producing significant alignments: (bits) Value
srlA 335 3e-92
PM1971 282 2e-76
ZsrlA.1 241 3e-64
BH0771 156 1e-38
mll3614 125 2e-29
ZsrlA.2 89 3e-18
# >srlA
# Length = 187
#
# Score = 335 bits (858), Expect = 3e-92
# Identities = 166/187 (88%), Positives = 166/187 (88%)
#
# Query: 1 MIETITHGAEWFIGLFQKGGKVFTGMVTGILPLLISLLVIMNALINFIGQHRIERFAQRC 60
# MIETITHGAEWFIGLFQKGGKVFTGMVTGILPLLISLLVIMNALINFIGQHRIERFAQRC
# Sbjct: 1 MIETITHGAEWFIGLFQKGGKVFTGMVTGILPLLISLLVIMNALINFIGQHRIERFAQRC 60
#
# Query: 61 AGNPVSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPXXXXXXXXXCHSMNGLFPHINPG 120
# AGNPVSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKP CHSMNGLFPHINPG
# Sbjct: 61 AGNPVSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPSYYAAASYSCHSMNGLFPHINPG 120
#
# Query: 121 ELFVYLGIASXXXXXXXXXXXXAVSYLLVGLVTNFFRGWVTDLTTAIFEKKMGIQLEQKV 180
# ELFVYLGIAS AVSYLLVGLVTNFFRGWVTDLTTAIFEKKMGIQLEQKV
# Sbjct: 121 ELFVYLGIASGLTTLNLPLGPLAVSYLLVGLVTNFFRGWVTDLTTAIFEKKMGIQLEQKV 180
#
# Query: 181 HLAGATS 187
# HLAGATS
# Sbjct: 181 HLAGATS 187
#
#
# >PM1971
# Length = 184
#
# Score = 282 bits (721), Expect = 2e-76
# Identities = 133/183 (72%), Positives = 151/183 (81%)
#
# Query: 1 MIETITHGAEWFIGLFQKGGKVFTGMVTGILPLLISLLVIMNALINFIGQHRIERFAQRC 60
# MIE ITHGAEWFIGLFQKGG+V M+TGILPLLISLLV+MNALINFIGQ RIER AQR
# Sbjct: 1 MIEYITHGAEWFIGLFQKGGEVLVSMMTGILPLLISLLVVMNALINFIGQERIERLAQRS 60
#
# Query: 61 AGNPVSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPXXXXXXXXXCHSMNGLFPHINPG 120
# AGNP+SRY +LP IGTF+FCNPMTLSLGRF+PE+YKP CHSMNGLFPHINPG
# Sbjct: 61 AGNPISRYFILPVIGTFIFCNPMTLSLGRFLPERYKPSYYAAASYSCHSMNGLFPHINPG 120
#
# Query: 121 ELFVYLGIASXXXXXXXXXXXXAVSYLLVGLVTNFFRGWVTDLTTAIFEKKMGIQLEQKV 180
# ELFVYLGIAS A+SYLLVG+VTNFFRGW+TD TTA+FEK+MGI+L+++V
# Sbjct: 121 ELFVYLGIASGLTTLGLPLGPLAISYLLVGMVTNFFRGWITDFTTALFEKRMGIKLDREV 180
#
# Query: 181 HLA 183
# +A
# Sbjct: 181 RIA 183
#
#
# >ZsrlA.1
# Length = 131
#
# Score = 241 bits (616), Expect = 3e-64
# Identities = 115/128 (89%), Positives = 117/128 (90%)
#
# Query: 1 MIETITHGAEWFIGLFQKGGKVFTGMVTGILPLLISLLVIMNALINFIGQHRIERFAQRC 60
# MIETITHGAEWFIGLFQKGG+VFTGMVTGILPLLISLLVIMNALINFIGQHRIERFAQRC
# Sbjct: 1 MIETITHGAEWFIGLFQKGGEVFTGMVTGILPLLISLLVIMNALINFIGQHRIERFAQRC 60
#
# Query: 61 AGNPVSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPXXXXXXXXXCHSMNGLFPHINPG 120
# AGNPVSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKP CHSMNGLFPHINPG
# Sbjct: 61 AGNPVSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPSYYAAASYSCHSMNGLFPHINPG 120
#
# Query: 121 ELFVYLGI 128
# ELFV L +
# Sbjct: 121 ELFVILAL 128
#
#
# >BH0771
# Length = 182
#
# Score = 156 bits (395), Expect = 1e-38
# Identities = 74/170 (43%), Positives = 101/170 (58%)
#
# Query: 9 AEWFIGLFQKGGKVFTGMVTGILPLLISLLVIMNALINFIGQHRIERFAQRCAGNPVSRY 68
# AE FIG+FQ+GG+VF G+VTGI+P LI L+ +NA+I +G+ RI RFA +C N + RY
# Sbjct: 8 AEGFIGMFQEGGEVFMGLVTGIIPTLICLITAVNAIIKMVGEERINRFAMKCTKNIILRY 67
#
# Query: 69 LLLPCIGTFVFCNPMTLSLGRFMPEKYKPXXXXXXXXXCHSMNGLFPHINPGELFVYLGI 128
# + P + F NPM + GRF+PEK KP H + GLFPH NP ELFVY+GI
# Sbjct: 68 SVFPVLAVFFLTNPMAYTFGRFLPEKQKPAFYDSAVSFVHPVTGLFPHANPAELFVYMGI 127
#
# Query: 129 ASXXXXXXXXXXXXAVSYLLVGLVTNFFRGWVTDLTTAIFEKKMGIQLEQ 178
# A+ A+ + LVG++ RG VT+ T K G+ ++Q
# Sbjct: 128 AAGITELGLSLGPLAIRFFLVGILVILIRGIVTEFLTVRMMKAKGMDVDQ 177
#
#
# >mll3614
# Length = 230
#
# Score = 125 bits (315), Expect = 2e-29
# Identities = 65/179 (36%), Positives = 94/179 (52%), Gaps = 7/179 (3%)
#
# Query: 5 ITHGAEWFIGLFQKGGKVFTGMVTGILPLLISLLVIMNALINFIGQHRIERFAQRCAGNP 64
# +T ++FIG+FQKGG+VF G VTGI+P L+ L+ A+ +G+ R+ A+
# Sbjct: 52 LTAIGKYFIGIFQKGGEVFAGFVTGIIPTLVVLMTAFYAVTELVGEERVHGLARGAGRIA 111
#
# Query: 65 VSRYLLLPCIGTFVFCNPMTLSLGRFMPEKYKPXXXXXXXXXCHSMNGLFPHINPGELFV 124
# ++RY LLP + F NPM + G F+ EK+KP H GLFPHINPGE FV
# Sbjct: 112 LTRYTLLPLLAVFFLTNPMAYTFGSFLEEKHKPAFYDAAVSYVHPPLGLFPHINPGEYFV 171
#
# Query: 125 YLGI-------ASXXXXXXXXXXXXAVSYLLVGLVTNFFRGWVTDLTTAIFEKKMGIQL 176
# + GI A+ Y +VGLV +G +T+ T I ++ G++L
# Sbjct: 172 WGGILVALLELEKKGVVVAGYHVKVAIWYAIVGLVVILLKGMLTERITTIMARRQGVEL 230
#
#
# >ZsrlA.2
# Length = 44
#
# Score = 89.0 bits (219), Expect = 3e-18
# Identities = 43/44 (97%), Positives = 44/44 (99%)
#
# Query: 144 VSYLLVGLVTNFFRGWVTDLTTAIFEKKMGIQLEQKVHLAGATS 187
# +SYLLVGLVTNFFRGWVTDLTTAIFEKKMGIQLEQKVHLAGATS
# Sbjct: 1 MSYLLVGLVTNFFRGWVTDLTTAIFEKKMGIQLEQKVHLAGATS 44
#
#
Database: xyva
Posted date: Feb 4, 2002 11:21 PM
Number of letters in database: 33,061,072
Number of sequences in database: 108,091
Lambda K H
0.329 0.145 0.454
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,669,830
Number of Sequences: 108091
Number of extensions: 373466
Number of successful extensions: 943
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 936
Number of HSP's gapped (non-prelim): 6
length of query: 187
length of database: 33,061,072
effective HSP length: 99
effective length of query: 88
effective length of database: 22,360,063
effective search space: 1967685544
effective search space used: 1967685544
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 60 (27.7 bits)
S2: 60 (27.7 bits)