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Sample GSM299211 Query DataSets for GSM299211
Status Public on Sep 15, 2008
Title NormSkin2 (single-channel-Median-Norm-Intensity)
Sample type RNA
 
Source Name normal tissue
Organism(s) Homo sapiens
Characteristics none
Extracted molecule total RNA
Extraction protocol Trizol
Label Cy3 or Cy5
Label protocol Agilent lowRNA input labeling
 
Hybridization protocol Agilent In-situ hybridization
Scan protocol Agilent scanner.
Description Pancreatic Tumor samples with mix of human normals arrayed on Agilent oligo (v1:18K probes&v2:22k probes)platform, single channel extracted median standardized, control removes,common arrays combined to reduced number (~17l)
Data processing The data were obtained with the Agilent Feature Extration Algorithm/Software v5.x,v6.x,v7.x,v8.x,v9.x. The raw data was standardized by each chip median value to cross compare arrays. Common probes taken from tow versions (Agilent human v1&v2) chips, repeating Q/Cl probes replaced by median values other control probes removed.
 
Submission date Jun 20, 2008
Contact name Yoga Balagurunathan
E-mail(s) yoga@tgen.org
Organization name TGEN
Street address 445 N. Fifth street
City Phoenix
State/province AZ
ZIP/Postal code 85004
Country USA
 
Platform ID GPL6977
Series (1)
GSE11838 Pancreatic Tumor vs Various Tissue Normals

Data table header descriptions
ID_REF
VALUE Normalized signal intensity [scale based (median) normalization]

Data table
ID_REF VALUE
A_23_P146576 0.3084
A_23_P125016 19.447641
A_23_P28555 1.990794
A_23_P23227 3.256617
A_23_P137543 0.822785
A_23_P27247 0.210587
A_23_P258433 0.36939
A_23_P28649 4.591484
A_23_P96529 0.590334
A_23_P2322 0.218642
A_23_P203419 0.310702
A_23_P122674 2.082854
A_23_P250800 0.388377
A_23_P23611 1.749137
A_23_P68884 1.818182
A_23_P111402 0.248562
A_23_P136095 0.121979
A_23_P81867 7.422325
A_23_P165457 0.589183
A_23_P72372 0.217491

Total number of rows: 17084

Table truncated, full table size 357 Kbytes.




Supplementary data files not provided
Raw data is available on Series record
Processed data included within Sample table

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