BLASTX+BEAUTY Search Results

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BLASTX+BEAUTY Search Results

WU-BLAST 2.0 search of the National Center for Biotechnology Information's NR Protein Database.
BEAUTY post-processing provided by the Human Genome Sequencing Center, Baylor College of Medicine.
BEAUTY Reference:
Worley KC, Culpepper P, Wiese BA, Smith RF. BEAUTY-X: enhanced BLAST searches for DNA queries. Bioinformatics 1998;14(10):890-1. Abstract
Worley KC, Wiese BA, Smith RF. BEAUTY: an enhanced BLAST-based search tool that integrates multiple biological information resources into sequence similarity search results. Genome Res 1995 Sep;5(2):173-84 Abstract


RepeatMasker repeats found in sequence:
No Repeats Found.

Reference:  Gish, Warren (1994-1997).  unpublished.
Gish, Warren and David J. States (1993).  Identification of protein coding
regions by database similarity search.  Nat. Genet. 3:266-72.

Notice:  statistical significance is estimated under the assumption that the
equivalent of one entire reading frame in the query sequence codes for protein
and that significant alignments will involve only coding reading frames.

Query=  A05A11_CONSENSUS
        (544 letters)
  Translating both strands of query sequence in all 6 reading frames

Database:  nr
           625,274 sequences; 197,782,623 total letters.


     Observed Numbers of Database Sequences Satisfying
    Various EXPECTation Thresholds (E parameter values)

        Histogram units:      = 6 Sequences     : less than 6 sequences

 EXPECTation Threshold
 (E parameter)
    |
    V   Observed Counts-->
  10000 2472 345 |=========================================================
   6310 2127 299 |=================================================
   3980 1828 283 |===============================================
   2510 1545 214 |===================================
   1580 1331 281 |==============================================
   1000 1050 259 |===========================================
    631  791 122 |====================
    398  669  89 |==============
    251  580  52 |========
    158  528  44 |=======
    100  484  32 |=====
   63.1  452  25 |====
   39.8  427  28 |====
   25.1  399  18 |===
   15.8  381  18 |===
 >>>>>>>>>>>>>>>>>>>>>  Expect = 10.0, Observed = 363  <<<<<<<<<<<<<<<<<
   10.0  363  14 |==
   6.31  349  11 |=
   3.98  338  16 |==
   2.51  322   7 |=
   1.58  315   9 |=
   1.00  306   6 |=
   0.63  300   2 |:
   0.40  298   2 |:
   0.25  296   5 |:
   0.16  291  12 |==
   0.10  279   7 |=
  0.063  272   1 |:
  0.040  271   4 |:
  0.025  267   2 |:
  0.016  265   2 |:
  0.010  263   1 |:
 0.0063  262   6 |=
 0.0040  256   6 |=
 0.0025  250   4 |:
 0.0016  246   2 |:


                                                                     Smallest
                                                                       Sum
                                                     Reading  High  Probability
Sequences producing High-scoring Segment Pairs:        Frame Score  P(N)      N
gi|4544454|gb|AAD22362.1|AC006592_19(AC006592) putati... +3   764  8.2e-75   1
gi|7441920|pir||T06102heat shock protein T5J17.130, d... +3   757  4.5e-74   1
gi|7441921|pir||T06594heat shock protein dnaJ - garde... +3   437  3.7e-40   1
gi|7441919|pir||S76013heat shock protein dnaJ - Synec... +3   433  9.7e-40   1
gi|11132491|sp|Q9UXR9|DNAJ_METTECHAPERONE PROTEIN DNA... +3   431  1.6e-39   1
gi|10566912|dbj|BAB16032.1|(AB030809) Streptococcus p... +3   430  2.0e-39   1
gi|544179|sp|P35515|DNAJ_METMACHAPERONE PROTEIN DNAJ ... +3   429  2.6e-39   1
gi|11132149|sp|O69269|DNAJ_BACSHCHAPERONE PROTEIN DNA... +3   426  5.4e-39   1
gi|9294487|dbj|BAB02706.1|(AB019230) DnaJ homolog [Ar... +3   425  6.9e-39   1
gi|1169369|sp|P30725|DNAJ_CLOABCHAPERONE PROTEIN DNAJ... +3   424  8.8e-39   1
gi|11132461|sp|Q9S5A3|DNAJ_LISMOCHAPERONE PROTEIN DNA... +3   424  8.8e-39   1
gi|3122013|sp|P95830|DNAJ_STRPNCHAPERONE PROTEIN DNAJ... +3   420  2.3e-38   1
gi|544178|sp|P35514|DNAJ_LACLACHAPERONE PROTEIN DNAJ ... +3   406  7.1e-37   1
gi|12725291|gb|AAK06322.1|AE006451_3(AE006451) DnaJ p... +3   406  7.1e-37   1
gi|2494151|sp|Q45552|DNAJ_BACSTCHAPERONE PROTEIN DNAJ... +3   389  4.5e-35   1
gi|118716|sp|P17631|DNAJ_BACSUCHAPERONE PROTEIN DNAJ ... +3   385  1.2e-34   1
gi|9309334|dbj|BAB03216.1|(AB017035) dnaJ [Bacillus t... +3   385  1.2e-34   1
gi|10173964|dbj|BAB05067.1|(AP001511) heat-shock prot... +3   381  3.2e-34   1
gi|11348467|pir||A83052DnaJ protein PA4760 [imported]... +3   380  4.0e-34   1
gi|544177|sp|Q05646|DNAJ_ERYRHCHAPERONE PROTEIN DNAJ ... +3   372  2.8e-33   1
gi|11132184|sp|O87778|DNAJ_LACSKCHAPERONE PROTEIN DNA... +3   370  4.6e-33   1
gi|6226599|sp|O06431|DNAJ_NITEUCHAPERONE PROTEIN DNAJ... +3   369  5.9e-33   1
gi|1352281|sp|P48207|DNAJ_FRATUCHAPERONE PROTEIN DNAJ... +3   360  5.3e-32   1
gi|118719|sp|P08622|DNAJ_ECOLICHAPERONE PROTEIN DNAJ ... +3   359  6.8e-32   1
gi|12512693|gb|AAG54315.1|AE005178_5(AE005178) chaper... +3   359  6.8e-32   1
gi|1706465|sp|P50025|DNAJ_LEGPNCHAPERONE PROTEIN DNAJ... +3   357  1.1e-31   1
gi|6226598|sp|P71443|DNAJ_LEPINCHAPERONE PROTEIN DNAJ... +3   357  1.1e-31   1
gi|1169372|sp|P45555|DNAJ_STAAUCHAPERONE PROTEIN DNAJ... +3   356  1.4e-31   1
gi|11132612|sp|Q9ZFC5|DNAJ_METSSCHAPERONE PROTEIN DNA... +3   347  1.3e-30   1
gi|461943|sp|Q05980|DNAJ_BRUOVCHAPERONE PROTEIN DNAJ ... +3   344  2.6e-30   1
gi|11132181|sp|O87385|DNAJ_VIBHACHAPERONE PROTEIN DNA... +3   344  2.6e-30   1
gi|11132035|sp|O08356|DNAJ_RHOSPCHAPERONE PROTEIN DNA... +3   343  3.4e-30   1
gi|12644061|sp|O34242|DNAJ_VIBCHCHAPERONE PROTEIN DNA... +3   342  4.3e-30   1
gi|6855462|dbj|BAA90474.1|(AB009842) DnaJ [Brevibacil... +3   340  7.0e-30   1
gi|2494152|sp|Q60004|DNAJ_SALTYCHAPERONE PROTEIN DNAJ... +3   338  1.1e-29   1
gi|11132092|sp|O52065|DNAJ_PASHACHAPERONE PROTEIN DNA... +3   337  1.4e-29   1
gi|12721036|gb|AAK02824.1|(AE006111) DnaJ [Pasteurell... +3   337  1.4e-29   1
gi|1352282|sp|P48208|DNAJ_HAEDUCHAPERONE PROTEIN DNAJ... +3   336  1.9e-29   1
gi|3121994|sp|P94319|DNAJ_BRAJACHAPERONE PROTEIN DNAJ    +3   336  1.9e-29   1
gi|11132233|sp|P57107|DNAJ_NEIMACHAPERONE PROTEIN DNA... +3   334  3.0e-29   1
gi|3122001|sp|O27352|DNAJ_METTHCHAPERONE PROTEIN DNAJ... +3   333  3.8e-29   1
gi|6226597|sp|P77866|DNAJ_ACTACCHAPERONE PROTEIN DNAJ... +3   333  3.8e-29   1
gi|3122004|sp|O33529|DNAJ_RHILECHAPERONE PROTEIN DNAJ... +3   329  1.0e-28   1
gi|1074176|pir||C64112heat shock protein dnaJ - Haemo... +3   325  2.7e-28   1
gi|1169371|sp|P43735|DNAJ_HAEINCHAPERONE PROTEIN DNAJ    +3   325  2.7e-28   1
gi|3122016|sp|Q52702|DNAJ_RHOCACHAPERONE PROTEIN DNAJ... +3   321  7.2e-28   1
gi|9789744|sp|O25890|DNAJ_HELPYCHAPERONE PROTEIN DNAJ... +3   319  1.2e-27   1
gi|461942|sp|Q03363|DNJ1_ALLPODNAJ PROTEIN HOMOLOG 1 ... +3   318  1.5e-27   1
gi|1169370|sp|P42381|DNAJ_COXBUCHAPERONE PROTEIN DNAJ... +3   318  1.5e-27   1
gi|7488735|pir||T09338DnaJ-like protein MsJ1 - alfalf... +3   318  1.5e-27   1



Locally-aligned regions (HSPs) with respect to query sequence:

Locus_ID                Frame 3 Hits
gi|4544454             |__________________________________________________
gi|7441920             |__________________________________________________
gi|7441921             |__________________________________________________
gi|7441919             |__________________________________________________
gi|11132491            |__________________________________________________
gi|10566912            |__________________________________________________
gi|544179              |__________________________________________________
gi|11132149            |__________________________________________________
gi|9294487             |__________________________________________________
gi|1169369             | _________________________________________________
gi|11132461            |__________________________________________________
gi|3122013             |_________________________________________________ 
gi|544178              |__________________________________________________
gi|12725291            |__________________________________________________
gi|2494151             |_________________________________________________ 
gi|118716              |__________________________________________________
gi|9309334             |_________________________________________________ 
gi|10173964            |__________________________________________________
gi|11348467            |__________________________________________________
gi|544177              |__________________________________________________
gi|11132184            |_________________________________________________ 
gi|6226599             | _________________________________________________
gi|1352281             |__________________________________________________
gi|118719              | _________________________________________________
gi|12512693            | _________________________________________________
gi|1706465             |__________________________________________________
gi|6226598             | _________________________________________________
gi|1169372             |__________________________________________________
gi|11132612            |__________________________________________________
gi|461943              |__________________________________________________
gi|11132181            |__________________________________________________
gi|11132035            |__________________________________________________
gi|12644061            |__________________________________________________
gi|6855462             | _________________________________________________
gi|2494152             | _________________________________________________
gi|11132092            | _________________________________________________
gi|12721036            | _________________________________________________
gi|1352282             | _________________________________________________
gi|3121994             |__________________________________________________
gi|11132233            | _________________________________________________
gi|3122001             |_________________________________________________ 
gi|6226597             | _________________________________________________
gi|3122004             | _________________________________________________
gi|1074176             | _________________________________________________
gi|1169371             | _________________________________________________
gi|3122016             |__________________________________________________
gi|9789744             | ________________________________________________ 
gi|461942              | ________________________________________________ 
gi|1169370             |__________________________________________________
gi|7488735             | ________________________________________________ 
Prosite Hits:             ______                                          
                        __________________________________________________
Query sequence:        |             |             |            |         | 182
                       0            50           100          150
__________________
Prosite hits:
   DNAJ_1               Nt-dnaJ domain signature.                10..29
__________________


Use the  and  icons to retrieve links to Entrez:
E = Retrieve Entrez links (e.g., Medline abstracts, FASTA-formatted sequence reports).
R = Retrieve links to Related sequences (neighbors).

Use the  icon (if present) to retrieve links to the Sequence Retrieval System (SRS).

Use the  icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .

Use the  icon (if present) to retrieve links to the Protein Data Bank database.

WARNING:  Descriptions of 313 database sequences were not reported due to the
          limiting value of parameter V = 50.



 >gi|4544454|gb|AAD22362.1|AC006592_19  (AC006592) putative DnaJ protein
            [Arabidopsis thaliana]
            Length = 391

Frame  3 hits (HSPs):           ________________________                  
                        __________________________________________________
Database sequence:     |                   |                  |           | 391
                       0                 150                300

  Plus Strand HSPs:

 Score = 764 (268.9 bits), Expect = 8.2e-75, P = 8.2e-75
 Identities = 140/179 (78%), Positives = 162/179 (90%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGS-GMGMGDFSNPFDLFESLFEG 182
             ++PGAE+KFKEISNAYEVLSDDEK+S+YDR+GEAGLKG+ G G GDFSNPFDLF+SLFEG
Sbjct:    68 KDPGAEEKFKEISNAYEVLSDDEKKSLYDRYGEAGLKGAAGFGNGDFSNPFDLFDSLFEG 127

Query:   183 MNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTT 362
                G G RGS + A+DG+DEYY+L+LNFKEAVFG+EKEIEISRLESCGTC GSGAKPGT 
Sbjct:   128 FGGGMG-RGSRSRAVDGQDEYYTLILNFKEAVFGMEKEIEISRLESCGTCEGSGAKPGTK 186

Query:   363 PSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGXLKKSKRISL 542
             P++C TCGGQG+VVS+  TPLG+FQQ MTCSSCNGTGEISTPC TCSGDG ++K+KRISL
Sbjct:   187 PTKCTTCGGQGQVVSAARTPLGVFQQVMTCSSCNGTGEISTPCGTCSGDGRVRKTKRISL 246


 >gi|7441920|pir||T06102  heat shock protein T5J17.130, dnaJ-type - Arabidopsis
            thaliana >gi|4490747|emb|CAB38909.1| (AL035708) DnaJ-like protein
            [Arabidopsis thaliana] >gi|7271051|emb|CAB80659.1| (AL161596)
            DnaJ-like protein [Arabidopsis thaliana]
            Length = 396

Frame  3 hits (HSPs):           ________________________                  
                        __________________________________________________
Database sequence:     |                  |                  |            | 396
                       0                150                300

  Plus Strand HSPs:

 Score = 757 (266.5 bits), Expect = 4.5e-74, P = 4.5e-74
 Identities = 143/186 (76%), Positives = 162/186 (87%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMG-MGDFSNPFDLFESLFEG 182
             ++ GAE KFKEISNAYE+LSDDEKRS+YDR+GEAG+KG+GMG MGD+SNPFDLFESLFEG
Sbjct:    67 KDAGAEDKFKEISNAYEILSDDEKRSLYDRYGEAGVKGAGMGGMGDYSNPFDLFESLFEG 126

Query:   183 MNR------GAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSG 344
             M        G GSRGS + AIDGEDEYYSL+LNFKEAVFGIEKEIEISRLESCGTCNGSG
Sbjct:   127 MGGMGGMGGGMGSRGSRSRAIDGEDEYYSLILNFKEAVFGIEKEIEISRLESCGTCNGSG 186

Query:   345 AKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGXLKK 524
             AK GT P++C TCGGQG+VV+ST TPLG+FQQ MTCS CNGTGEIS PC  CSGDG +++
Sbjct:   187 AKAGTKPTKCKTCGGQGQVVASTRTPLGVFQQVMTCSPCNGTGEISKPCGACSGDGRVRR 246

Query:   525 SKRISL 542
             +KRISL
Sbjct:   247 TKRISL 252


 >gi|7441921|pir||T06594  heat shock protein dnaJ - garden pea
            >gi|1707657|emb|CAA96305.1| (Z71640) DnaJ homologue [Pisum sativum]
            Length = 498

Frame  3 hits (HSPs):             ____________________                    
                        __________________________________________________
Database sequence:     |              |               |              |    | 498
                       0            150             300            450

  Plus Strand HSPs:

 Score = 437 (153.8 bits), Expect = 3.7e-40, P = 3.7e-40
 Identities = 92/189 (48%), Positives = 120/189 (63%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGS-GMGMGDFS-NPFDLFESLFE 179
             +EPGA  KFKEISNAYEVLSDD+KR++YD++GEAG+K S G G   ++ NPFDLFE+ F 
Sbjct:   104 KEPGATDKFKEISNAYEVLSDDKKRALYDQYGEAGVKSSVGGGSSAYATNPFDLFETFFG 163

Query:   180 -------GMN-RGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCN 335
                    GM+  G G+R   +    GED  Y   L F EA+FG EKE E+  LE+C  C 
Sbjct:   164 SNMGGFGGMDPTGFGTRRR-STVTKGEDIRYDFSLEFSEAIFGAEKEFELFHLETCEVCT 222

Query:   336 GSGAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDG 512
             G+GAK G+    C TCGG+G+V+ +  TP G+F Q   C +C G GE IS  C  CSG G
Sbjct:   223 GTGAKLGSKMRVCSTCGGRGQVMRTEQTPFGLFSQVSVCPNCGGDGEVISENCRKCSGAG 282

Query:   513 XLKKSKRISL 542
              ++  K + +
Sbjct:   283 RIRVKKNMKV 292


 >gi|7441919|pir||S76013  heat shock protein dnaJ - Synechocystis sp. (strain PCC
            6803) >gi|1001370|dbj|BAA10860.1| (D64006) DnaJ [Synechocystis sp.]
            Length = 377

Frame  3 hits (HSPs):       __________________________                    
                        __________________________________________________
Database sequence:     |                   |                   |          | 377
                       0                 150                 300

  Plus Strand HSPs:

 Score = 433 (152.4 bits), Expect = 9.7e-40, P = 9.7e-40
 Identities = 93/187 (49%), Positives = 119/187 (63%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSG-----MG-MGDFSNPFDLFE 167
             +EPGAE+KFKEI+ AYEVLS+ E R  YD+FGEAG+ G G     +G MGDF+   D+FE
Sbjct:    37 KEPGAEEKFKEINRAYEVLSEPEIRQRYDQFGEAGVSGGGAQGFDVGNMGDFA---DIFE 93

Query:   168 SLFEGMNRGAGS--RGSW--NGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCN 335
             ++F G   G G   RG    NG   G+D    L L F+EA+FG EKEI I  LESC  C 
Sbjct:    94 TIFGGFGGGMGGQQRGRRRANGPTRGDDLRLDLQLTFQEAIFGGEKEIRIPHLESCQVCE 153

Query:   336 GSGAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDG 512
             G+GAKPGT    C TC G G+V  +T TP G F Q   C +CNG+GE I   C  C+G G
Sbjct:   154 GTGAKPGTGVKTCGTCNGAGQVRRATRTPFGSFAQVSACPTCNGSGEVIEQKCEACNGVG 213

Query:   513 XLKKSKRISL 542
               +++K++ +
Sbjct:   214 RKQETKKLKI 223


 >gi|11132491|sp|Q9UXR9|DNAJ_METTE  CHAPERONE PROTEIN DNAJ (HEAT SHOCK PROTEIN
            40) >gi|5824078|emb|CAB53763.1| (AJ010152) heat shock protein
            40(DnaJ) [Methanosarcina thermophila]
            Length = 387

Frame  3 hits (HSPs):       ________________________                      
                        __________________________________________________
Database sequence:     |                   |                  |           | 387
                       0                 150                300

  Plus Strand HSPs:

 Score = 431 (151.7 bits), Expect = 1.6e-39, P = 1.6e-39
 Identities = 89/179 (49%), Positives = 121/179 (67%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGS----GMGMG-DFSNPFDLFES 170
             +EPGAE+KFKEIS AY VLSD EKR+ YDRFG AG+ G      +  G DFS   D+FE 
Sbjct:    39 KEPGAEEKFKEISEAYAVLSDPEKRAQYDRFGHAGINGQYTAEDIFRGADFSGFGDIFEM 98

Query:   171 LFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAK 350
              F G  RG   RG   G+    D  Y L + F+EA FG+ K+I++ R E C  C+G+GA+
Sbjct:    99 FFGGSRRGP--RGPRRGS----DLQYDLYITFEEAAFGVRKDIDVPRTERCSNCSGTGAR 152

Query:   351 PGTTPSRCXTCGGQGRVVSSTXTPLGI-FQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKK 524
             PGT+P RC TCGG G++  +T T LG+ F  + TCS+C G G+ I +PC  CSG G ++ 
Sbjct:   153 PGTSPKRCPTCGGTGQI-RTTRTGLGMQFVSTTTCSTCRGKGQVIESPCPVCSGTGRVRN 211

Query:   525 SKRISL 542
             +++I++
Sbjct:   212 TRKITV 217


 >gi|10566912|dbj|BAB16032.1|  (AB030809) Streptococcus pneumoniae DnaJ protein
            homologue [Streptococcus pyogenes]
            Length = 378

Frame  3 hits (HSPs):       __________________________                    
                        __________________________________________________
Database sequence:     |                   |                   |          | 378
                       0                 150                 300

  Plus Strand HSPs:

 Score = 430 (151.4 bits), Expect = 2.0e-39, P = 2.0e-39
 Identities = 85/184 (46%), Positives = 115/184 (62%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGS-GMGMGDFSN----PFDLFES 170
             +E GAEQK+K++  AYE LSD +KR+ YD++G AG +G  G G G F       F  FE 
Sbjct:    38 KEAGAEQKYKDVQEAYETLSDSQKRAAYDQYGAAGAQGGFGGGAGGFGGFDGGGFGGFED 97

Query:   171 LFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAK 350
             +F     G GSR   N    G+D  Y + L+F+EAVFG+EKE+  +R  +CGTC GSGAK
Sbjct:    98 IFSSFFGGGGSRNP-NAPRQGDDLQYRVNLSFEEAVFGVEKEVSYNREATCGTCLGSGAK 156

Query:   351 PGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTG-EISTPCNTCSGDGXLKKS 527
             PGT P  C  C G G +   T TPLG+ ++ +TC  C+G+G EI  PC TC G G  K++
Sbjct:   157 PGTAPVTCRKCHGSGVMTIDTQTPLGMMRRQVTCDICHGSGKEIKEPCQTCHGTGHEKQA 216

Query:   528 KRISL 542
              ++S+
Sbjct:   217 HKVSV 221


 >gi|544179|sp|P35515|DNAJ_METMA  CHAPERONE PROTEIN DNAJ >gi|541514|pir||S41748
            heat shock protein dnaJ - Methanosarcina mazei
            >gi|48940|emb|CAA42813.1| (X60265) DnaJ protein [Methanosarcina
            mazei]
            Length = 389

Frame  3 hits (HSPs):       ________________________                      
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 389
                       0                 150                300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       21..37
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       47..67
   DOMO                 DM00098: NT-DNAJDOMAIN                   1..101
   DOMO                 DM08080: HEATSHOCKPROTEINDNAJ            103..154
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              156..207
   DOMO                 DM00156: NT-DNAJDOMAIN                   209..285
   DOMO                 DM00156: NT-DNAJDOMAIN                   287..386
   Entrez               Domain: DNAJ-LIKE.                       4..72
   Entrez               Domain: GLY-RICH.                        73..110
   Entrez               Repetitive region: CXXCXGXG MOTIF.       144..151
   Entrez               Repetitive region: CXXCXGXG MOTIF.       161..168
   Entrez               Repetitive region: CXXCXGXG MOTIF.       187..194
   Entrez               Repetitive region: CXXCXGXG MOTIF.       201..208
   PFAM                 DnaJ: DnaJ domain                        6..70
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 131..215
   PFAM                 DnaJ_C: DnaJ C terminal region           228..349
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           17..36
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          47..67
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         136..155
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          161..171
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           179..197
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          199..214
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         218..234
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        264..281
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..67
   PRODOM               PD089698: DNAJ_METMA                     69..99
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       131..213
   PRODOM               PD149643: DNAJ(27)                       217..261
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       266..347
   PRODOM               PD089677: DNAJ_METMA                     349..388
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 187..192
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 429 (151.0 bits), Expect = 2.6e-39, P = 2.6e-39
 Identities = 88/180 (48%), Positives = 117/180 (65%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNP-FDLFESLFEG 182
             +EPGAE+KFKEIS AY VLSD EKR+ YDRFG AG+         F    F  F  +FE 
Sbjct:    39 KEPGAEEKFKEISEAYAVLSDAEKRAQYDRFGHAGIDNQYSAEDIFRGADFGGFGDIFE- 97

Query:   183 MNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTT 362
             M  G G RG   G   G D  Y L + F+EA FG+ K+I+I R E C TC+G+GAKPGT+
Sbjct:    98 MFFGGGRRGGPMGPRRGSDLQYDLYVTFEEAAFGVRKDIDIPRTERCSTCSGTGAKPGTS 157

Query:   363 PSRCXTCGGQGRVVSSTXTPLGI-FQQSMTCSSCNGTGEI-STPCNTCSGDGXLKKSKRI 536
             P RC  CGG G+V  +T + LG+ F  + TCS+C+G G++  +PC TCSG G ++  +++
Sbjct:   158 PKRCPNCGGTGQV-RTTRSTLGMQFVSTTTCSACHGRGQVVESPCPTCSGAGRVRSRRKM 216

Query:   537 SL 542
             S+
Sbjct:   217 SV 218


 >gi|11132149|sp|O69269|DNAJ_BACSH  CHAPERONE PROTEIN DNAJ
            >gi|3093288|emb|CAA76664.1| (Y17157) heat shock protein [Bacillus
            sphaericus]
            Length = 368

Frame  3 hits (HSPs):       _________________________                     
                        __________________________________________________
Database sequence:     |                    |                   |         | 368
                       0                  150                 300

  Plus Strand HSPs:

 Score = 426 (150.0 bits), Expect = 5.4e-39, P = 5.4e-39
 Identities = 86/179 (48%), Positives = 117/179 (65%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGE----AGLKGSGMGMGDFSNPFDLFESL 173
             +EPGA++KFKEI+ AYEVLSDD+K++ YD+FG     AG  G G G G F    D+F S 
Sbjct:    34 KEPGADEKFKEIAEAYEVLSDDQKKARYDQFGHEDPNAGF-GGGFGGGGFGGFEDIFSSF 92

Query:   174 FEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKP 353
             F G   G G R   N    G+D  Y + + F+EA+FG E EIEI + E+C TC+GSGAKP
Sbjct:    93 F-G---GGGRRQDPNAPRKGDDLQYRMNIKFEEAIFGKETEIEIPKDETCETCHGSGAKP 148

Query:   354 GTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSGDGXLKKSK 530
             GT P  C TC G G++  +  TP G      +C++C+GTG+I    C+TC G+G ++K K
Sbjct:   149 GTQPETCSTCNGAGQINQAVDTPFGRMMNRRSCTTCHGTGKIIKEKCSTCRGEGKVQKRK 208

Query:   531 RISL 542
             +I +
Sbjct:   209 KIKV 212


 >gi|9294487|dbj|BAB02706.1|  (AB019230) DnaJ homolog [Arabidopsis thaliana]
            Length = 438

Frame  3 hits (HSPs):             _______________________                 
                        __________________________________________________
Database sequence:     |                 |                |               | 438
                       0               150              300

  Plus Strand HSPs:

 Score = 425 (149.6 bits), Expect = 6.9e-39, P = 6.9e-39
 Identities = 90/191 (47%), Positives = 119/191 (62%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFS---NPFDLFESLF 176
             + PGAE KFK+IS AYEVLSD+EKRS YDRFGEAGL+G   G  D S   +PFDL+ + F
Sbjct:    96 KNPGAEDKFKQISAAYEVLSDEEKRSAYDRFGEAGLEGDFNGSQDTSPGVDPFDLYSAFF 155

Query:   177 EGMNRGAGSRGSWNG-AID-------GEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTC 332
              G +   G  G   G   D         D  Y L L+F+EAVFG+++EIE+S LE+C  C
Sbjct:   156 GGSDGFFGGMGESGGMGFDFMNKRSLDLDIRYDLRLSFEEAVFGVKREIEVSYLETCDGC 215

Query:   333 NGSGAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGD 509
              G+GAK   +  +C +C G+GRV++S  TP GI  Q  TCS C G G+ I+  C  C G+
Sbjct:   216 GGTGAKSSNSIKQCSSCDGKGRVMNSQRTPFGIMSQVSTCSKCGGEGKTITDKCRKCIGN 275

Query:   510 GXLKKSKRISL 542
             G L+  K++ +
Sbjct:   276 GRLRARKKMDV 286


 >gi|1169369|sp|P30725|DNAJ_CLOAB  CHAPERONE PROTEIN DNAJ >gi|541427|pir||S41758
            heat shock protein dnaJ - Clostridium acetobutylicum
            >gi|433079|emb|CAA48792.1| (X69050) DnaJ [Clostridium
            acetobutylicum]
            Length = 374

Frame  3 hits (HSPs):        _________________________                    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 374
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       47..67
   DOMO                 DM00098: NT-DNAJDOMAIN                   1..102
   DOMO                 DM08080: HEATSHOCKPROTEINDNAJ            104..160
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              162..213
   DOMO                 DM00156: NT-DNAJDOMAIN                   215..291
   DOMO                 DM00156: NT-DNAJDOMAIN                   293..373
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        76..108
   Entrez               Repetitive region: CXXCXGXG MOTIF.       150..157
   Entrez               Repetitive region: CXXCXGXG MOTIF.       167..174
   Entrez               Repetitive region: CXXCXGXG MOTIF.       193..200
   Entrez               Repetitive region: CXXCXGXG MOTIF.       207..214
   PFAM                 DnaJ: DnaJ domain                        5..70
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 137..221
   PFAM                 DnaJ_C: DnaJ C terminal region           234..355
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           16..35
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          47..67
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         142..161
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          167..177
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           185..203
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          205..220
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         224..240
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        270..287
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..67
   PRODOM               PD159795: DNAJ_CLOAB                     111..135
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       137..219
   PRODOM               PD149643: DNAJ(27)                       223..268
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       270..350
   PRODOM               PD171541: DNAJ_CLOAB                     352..373
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 424 (149.3 bits), Expect = 8.8e-39, P = 8.8e-39
 Identities = 87/182 (47%), Positives = 110/182 (60%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPF-------DLFESLF 176
             AE+KFKEI+ AY+VLSD +K++ YDRFG A   G G G GDFS  F       D+F S F
Sbjct:    43 AEEKFKEINEAYQVLSDPDKKANYDRFGTADFNGGG-GFGDFSGGFGDFGDLGDIFNSFF 101

Query:   177 EGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPG 356
              G   G  SR   +    G D  YS+ L F+EAVFG+EK I I+R E+C TC G+GAK G
Sbjct:   102 GGGFSGGSSRARKDAPQRGNDMEYSISLTFEEAVFGVEKSINITRSENCETCGGTGAKKG 161

Query:   357 TTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSGDGXLKKSKR 533
             T+P  C  CGG G +     TPLG F    +C  C G G I S PC+ C G G ++K ++
Sbjct:   162 TSPKTCDKCGGTGTIRVQRNTPLGSFVTQSSCDKCGGRGTIISDPCHECHGAGHVRKKRK 221

Query:   534 ISL 542
             IS+
Sbjct:   222 ISV 224


 >gi|11132461|sp|Q9S5A3|DNAJ_LISMO  CHAPERONE PROTEIN DNAJ
            >gi|11277162|pir||T43739 heat shock protein dnaJ [imported] -
            Listeria monocytogenes >gi|5689040|dbj|BAA82790.1| (AB023064) DnaJ
            [Listeria monocytogenes]
            Length = 377

Frame  3 hits (HSPs):       __________________________                    
                        __________________________________________________
Database sequence:     |                   |                   |          | 377
                       0                 150                 300

  Plus Strand HSPs:

 Score = 424 (149.3 bits), Expect = 8.8e-39, P = 8.8e-39
 Identities = 86/184 (46%), Positives = 109/184 (59%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEA----GLKGSGMGMGDFSNPFDLFESL 173
             +E GA++KFKEIS AYE LSD +KR+ YD++G      G  G G G G     F  FE +
Sbjct:    38 KEAGADEKFKEISEAYEALSDPQKRAQYDQYGHVDPNQGFGGGGAGGGFGGGGFSGFEDI 97

Query:   174 FEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKP 353
             F+    G G +   N    G D  Y++ L FKEA+FG + EIEI R E+C TC+GSGAKP
Sbjct:    98 FDTFFGGGGRQQDPNAPRQGSDLQYTMRLKFKEAIFGKDAEIEIPREENCDTCHGSGAKP 157

Query:   354 GTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTG-EISTPCNTCSGDGXLKKSK 530
             GTTP +C  CGG+G +     TP G      TC  CNGTG EI   C TC G G + K+K
Sbjct:   158 GTTPEKCSHCGGKGSINVEQNTPFGRVVNKRTCQYCNGTGKEIKEKCPTCHGKGRVTKTK 217

Query:   531 RISL 542
             +I +
Sbjct:   218 KIKV 221


 >gi|3122013|sp|P95830|DNAJ_STRPN  CHAPERONE PROTEIN DNAJ
            >gi|1750265|gb|AAB39222.1| (U72720) DnaJ [Streptococcus pneumoniae]
            Length = 352

Frame  3 hits (HSPs):        ___________________________                  
Annotated Domains:      _________________  ____________ __________________
                        __________________________________________________
Database sequence:     |                     |                    |       | 352
                       0                   150                  300
__________________

Annotated Domains:
   Entrez               Domain: DNAJ-LIKE.                       2..71
   Entrez               Domain: GLY-RICH.                        72..118
   Entrez               Repetitive region: CXXCXGXG MOTIF.       148..155
   Entrez               Repetitive region: CXXCXGXG MOTIF.       165..172
   Entrez               Repetitive region: CXXCXGXG MOTIF.       191..198
   Entrez               Repetitive region: CXXCXGXG MOTIF.       205..212
   PFAM                 DnaJ: DnaJ domain                        5..69
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 135..219
   PFAM                 DnaJ_C: DnaJ C terminal region           232..352
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 191..196
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 205..210
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        46..65
   PROSITE              RCC1_2: Regulator of chromosome condensa 163..173
__________________


  Plus Strand HSPs:

 Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
 Identities = 83/183 (45%), Positives = 109/183 (59%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDF-----SNPFDLFES 170
             +EPGAE K+KE+  AYE LSDD+KR+ YD++G AG  G   G G F     +  F  FE 
Sbjct:    38 KEPGAEDKYKEVQEAYETLSDDQKRAAYDQYGAAGANGGFGGAGGFGGFNGAGGFGGFED 97

Query:   171 LFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAK 350
             +F     G GS  + N    G+D  Y + L F+EA+FG EKE++  R   C TCNGSGAK
Sbjct:    98 IFSSFFGGGGSSRNPNAPRQGDDLQYRVNLTFEEAIFGTEKEVKYHREAGCRTCNGSGAK 157

Query:   351 PGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTG-EISTPCNTCSGDGXLKKS 527
             PGT+P  C  C G G +   T TPLG+ ++ +TC  C+G G EI  PC TC G G  K++
Sbjct:   158 PGTSPVTCGRCHGAGVINVDTQTPLGMMRRQVTCDVCHGRGKEIKYPCTTCHGTGHEKQA 217

Query:   528 KRI 536
               +
Sbjct:   218 HSV 220


 >gi|544178|sp|P35514|DNAJ_LACLA  CHAPERONE PROTEIN DNAJ >gi|421419|pir||A47079
            heat shock protein dnaJ - Lactococcus lactis
            Length = 379

Frame  3 hits (HSPs):       __________________________                    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 379
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       46..66
   DOMO                 DM00098: NT-DNAJDOMAIN                   1..116
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              118..166
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              168..217
   DOMO                 DM00156: NT-DNAJDOMAIN                   219..295
   DOMO                 DM00156: NT-DNAJDOMAIN                   297..378
   Entrez               Domain: DNAJ-LIKE.                       3..71
   Entrez               Domain: GLY-RICH.                        72..113
   Entrez               Repetitive region: CXXCXGXG MOTIF.       154..161
   Entrez               Repetitive region: CXXCXGXG MOTIF.       171..178
   Entrez               Repetitive region: CXXCXGXG MOTIF.       197..204
   Entrez               Repetitive region: CXXCXGXG MOTIF.       211..218
   PFAM                 DnaJ: DnaJ domain                        5..69
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 141..225
   PFAM                 DnaJ_C: DnaJ C terminal region           238..359
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           16..35
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          46..66
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         146..165
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          171..181
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           189..207
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          209..224
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         228..244
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        274..291
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..66
   PRODOM               PD033728: DNAJ(14)                       102..139
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       141..224
   PRODOM               PD149643: DNAJ(27)                       228..272
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       274..354
   PRODOM               PD171544: DNAJ_LACLA                     356..378
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 211..216
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        46..65
__________________


  Plus Strand HSPs:

 Score = 406 (142.9 bits), Expect = 7.1e-37, P = 7.1e-37
 Identities = 83/191 (43%), Positives = 112/191 (58%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKG----------SGM-GMGDFSNP 152
             +E GAE+K+KE+  AYE LSD++KR+ YD++GEAG  G          SG  G G  S  
Sbjct:    38 KEEGAEEKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGGGGFGGASGFSGFGGSSGG 97

Query:   153 FDLFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTC 332
             F  FE +F     G G++ + N    G+D  Y + L F+EA+FG+EK+++ +R E C TC
Sbjct:    98 FGGFEDIFSSFFGGGGAQVNPNAPRQGDDLQYRINLKFEEAIFGVEKQVKYNREELCHTC 157

Query:   333 NGSGAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTG-EISTPCNTCSGD 509
              GSGAK GT P  C  CGG+G++     TPLG  Q  +TC  CNGTG EI   C TC G 
Sbjct:   158 GGSGAKRGTHPETCHKCGGRGQINVVRDTPLGRMQTQVTCDVCNGTGKEIKEKCETCHGS 217

Query:   510 GXLKKSKRISL 542
             G  K +  + +
Sbjct:   218 GHEKVAHTVKV 228


 >gi|12725291|gb|AAK06322.1|AE006451_3  (AE006451) DnaJ protein [Lactococcus
            lactis subsp. lactis]
            Length = 379

Frame  3 hits (HSPs):       __________________________                    
                        __________________________________________________
Database sequence:     |                   |                   |          | 379
                       0                 150                 300

  Plus Strand HSPs:

 Score = 406 (142.9 bits), Expect = 7.1e-37, P = 7.1e-37
 Identities = 83/191 (43%), Positives = 112/191 (58%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKG----------SGM-GMGDFSNP 152
             +E GAE+K+KE+  AYE LSD++KR+ YD++GEAG  G          SG  G G  S  
Sbjct:    38 KEEGAEEKYKEVQEAYETLSDEQKRAAYDQYGEAGANGGFGGGGFGGASGFSGFGGGSGG 97

Query:   153 FDLFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTC 332
             F  FE +F     G G++ + N    G+D  Y + L F+EA+FG+EK+++ +R E C TC
Sbjct:    98 FGGFEDIFSSFFGGGGAQVNPNAPRQGDDLQYRINLKFEEAIFGVEKQVKYNREELCHTC 157

Query:   333 NGSGAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTG-EISTPCNTCSGD 509
              GSGAK GT P  C  CGG+G++     TPLG  Q  +TC  CNGTG EI   C TC G 
Sbjct:   158 GGSGAKAGTHPETCHKCGGRGQINVVRDTPLGRMQTQVTCDVCNGTGKEIKEKCETCHGS 217

Query:   510 GXLKKSKRISL 542
             G  K +  + +
Sbjct:   218 GHEKVAHTVKV 228


 >gi|2494151|sp|Q45552|DNAJ_BACST  CHAPERONE PROTEIN DNAJ >gi|2119734|pir||JC4739
            heat shock protein dnaJ - Bacillus stearothermophilus
            >gi|1568475|emb|CAA62240.1| (X90709) dnaJ [Bacillus
            stearothermophilus]
            Length = 380

Frame  3 hits (HSPs):       _________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 380
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       46..66
   Entrez               Domain: DNAJ-LIKE.                       3..71
   Entrez               Domain: GLY-RICH.                        76..107
   Entrez               Repetitive region: CXXCXGXG MOTIF.       148..155
   Entrez               Repetitive region: CXXCXGXG MOTIF.       165..172
   Entrez               Repetitive region: CXXCXGXG MOTIF.       191..198
   Entrez               Repetitive region: CXXCXGXG MOTIF.       205..212
   PFAM                 DnaJ: DnaJ domain                        5..69
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 135..219
   PFAM                 DnaJ_C: DnaJ C terminal region           232..353
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..66
   PRODOM               PD089712: DNAJ_BACST                     68..95
   PRODOM               PD033728: DNAJ(14)                       97..133
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       135..217
   PRODOM               PD149643: DNAJ(27)                       221..252
   PRODOM               PD089680: DNAJ_BACST                     254..294
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       296..351
   PRODOM               PD171550: DNAJ_BACST                     353..379
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 148..153
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        46..65
__________________


  Plus Strand HSPs:

 Score = 389 (136.9 bits), Expect = 4.5e-35, P = 4.5e-35
 Identities = 82/183 (44%), Positives = 106/183 (57%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEA-------GLKGSGMGMGDFSNPFDLF 164
             +EP A +KFKEI  AYEVLSDD+KR+ YD+FG+A       G +     +G FS  F  F
Sbjct:    38 KEPDAAEKFKEIKEAYEVLSDDQKRAHYDQFGQADPNQGFGGFRSDDFDLGGFSG-FGGF 96

Query:   165 ESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSG 344
             E +F     G G R + N    G D  Y++ L F+EA FG E +IEI   E+C TC+G+G
Sbjct:    97 EDIFNTFF-GGGRRRNPNAPRAGADLQYTMTLTFEEAAFGKETDIEIPSEETCNTCHGTG 155

Query:   345 AKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLK 521
             AKPGT P  C  C G G++ +   TP G      TC  C GTG+ I   C TC G G +K
Sbjct:   156 AKPGTKPETCPHCHGAGQISTEQSTPFGRIVNRRTCPYCGGTGQYIKEKCTTCGGTGRVK 215

Query:   522 KSKRI 536
             + K+I
Sbjct:   216 RRKKI 220


 >gi|118716|sp|P17631|DNAJ_BACSU  CHAPERONE PROTEIN DNAJ >gi|538925|pir||B41874
            heat shock protein dnaJ - Bacillus subtilis
            >gi|143060|gb|AAA22529.1| (M84964) heat shock protein [Bacillus
            subtilis] >gi|1303809|dbj|BAA12465.1| (D84432) DnaJ [Bacillus
            subtilis] >gi|2634992|emb|CAB14488.1| (Z99117) heat-shock protein
            [Bacillus subtilis]
            Length = 372

Frame  3 hits (HSPs):       __________________________                    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                    |                   |         | 372
                       0                  150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       46..66
   DOMO                 DM00098: NT-DNAJDOMAIN                   1..101
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              158..208
   DOMO                 DM00156: NT-DNAJDOMAIN                   210..284
   DOMO                 DM00156: NT-DNAJDOMAIN                   286..371
   Entrez               Domain: DNAJ-LIKE.                       3..71
   Entrez               Domain: GLY-RICH.                        76..103
   Entrez               Repetitive region: CXXCXGXG MOTIF.       145..152
   Entrez               Repetitive region: CXXCXGXG MOTIF.       162..169
   Entrez               Repetitive region: CXXCXGXG MOTIF.       188..195
   Entrez               Repetitive region: CXXCXGXG MOTIF.       202..209
   PFAM                 DnaJ: DnaJ domain                        5..69
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 132..216
   PFAM                 DnaJ_C: DnaJ C terminal region           229..347
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           16..35
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          46..66
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         137..156
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          162..172
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           180..198
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          200..215
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         219..235
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        264..281
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..66
   PRODOM               PD033728: DNAJ(14)                       95..130
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       132..214
   PRODOM               PD149643: DNAJ(27)                       218..262
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       264..345
   PRODOM               PD171547: DNAJ_BACSU                     347..371
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        46..65
__________________


  Plus Strand HSPs:

 Score = 385 (135.5 bits), Expect = 1.2e-34, P = 1.2e-34
 Identities = 82/182 (45%), Positives = 106/182 (58%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEA----GLKGSGMGMGDFSN-PFD-LFE 167
             +E G+++KFKE+  AYE LSDD+KR+ YD+FG      G  G G G GDF    FD +F 
Sbjct:    38 KEAGSDEKFKEVKEAYETLSDDQKRAHYDQFGHTDPNQGFGGGGFGGGDFGGFGFDDIFS 97

Query:   168 SLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGA 347
             S+F G  R    +    GA    D  Y++ L+F++A FG E  IEI R E+C TC GSGA
Sbjct:    98 SIFGGGTRRRDPKLRARGA----DLQYTMTLSFEDAAFGKETTIEIPREETCETCKGSGA 153

Query:   348 KPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSGDGXLKK 524
             KPGT P  C  CGG G++     TP G       C  C GTG+I    C  C G G +KK
Sbjct:   154 KPGTNPETCSHCGGSGQLNVEQNTPFGKVVNRRVCHHCEGTGKIIKNKCADCGGKGKIKK 213

Query:   525 SKRISL 542
              K+I++
Sbjct:   214 RKKINV 219


 >gi|9309334|dbj|BAB03216.1|  (AB017035) dnaJ [Bacillus thermoglucosidasius]
            Length = 380

Frame  3 hits (HSPs):       _________________________                     
                        __________________________________________________
Database sequence:     |                   |                   |          | 380
                       0                 150                 300

  Plus Strand HSPs:

 Score = 385 (135.5 bits), Expect = 1.2e-34, P = 1.2e-34
 Identities = 82/183 (44%), Positives = 104/183 (56%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEA-------GLKGSGMGMGDFSNPFDLF 164
             +EP A +KFKEI  AYEVLSDD+KR+ YD+FG A       G +      G FS  F  F
Sbjct:    38 KEPDAAEKFKEIKEAYEVLSDDQKRAHYDQFGHADPNQGFGGFRSDDFDFGGFSG-FSGF 96

Query:   165 ESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSG 344
             + +F     G G R   N    G D  Y++ L F+EAVFG E +IEI R E+C TC+G+G
Sbjct:    97 DDIFSTFF-GGGRRRDPNAPRAGADLQYTMTLTFEEAVFGKETDIEIPREETCNTCHGTG 155

Query:   345 AKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLK 521
             AKPGT    C  C G G++ +   TP G      TC  C GTG+ I   C TC G G +K
Sbjct:   156 AKPGTKKETCSYCHGTGQISTEQSTPFGRIVNRRTCPYCGGTGQYIKERCTTCGGTGRVK 215

Query:   522 KSKRI 536
             + K+I
Sbjct:   216 RRKKI 220


 >gi|10173964|dbj|BAB05067.1|  (AP001511) heat-shock protein (activation of DnaK)
            [Bacillus halodurans]
            Length = 370

Frame  3 hits (HSPs):        ________________________                     
                        __________________________________________________
Database sequence:     |                    |                   |         | 370
                       0                  150                 300

  Plus Strand HSPs:

 Score = 381 (134.1 bits), Expect = 3.2e-34, P = 3.2e-34
 Identities = 81/179 (45%), Positives = 104/179 (58%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGL-KG-SGMGMGDFSNPFDLFESLFE 179
             + P AE KFKE+  A++ LSD +K++ YD+FG     +G  G G GDF    D+F+  F 
Sbjct:    38 KAPDAEDKFKEVKEAFDTLSDPQKKAHYDQFGHTDPNQGFGGGGAGDFGGFSDIFDMFFG 97

Query:   180 GMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGT 359
             G   G G R   N    G D  Y++ L FKEAVFG E  IEI R E+C TC+GSGAKPGT
Sbjct:    98 G---GGGRRNP-NAPRQGADLQYTMTLEFKEAVFGKETTIEIPREETCHTCSGSGAKPGT 153

Query:   360 TPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKSKRI 536
              P  C  CGG G++     TP G       C  C GTG+ I   C TC G G ++K K+I
Sbjct:   154 KPESCPHCGGSGQLNIEQNTPFGRVVNRRVCHHCEGTGKYIKHKCATCGGKGKVRKRKKI 213

Query:   537 SL 542
             ++
Sbjct:   214 NV 215


 >gi|11348467|pir||A83052  DnaJ protein PA4760 [imported] - Pseudomonas
            aeruginosa  (strain PAO1) >gi|9951023|gb|AAG08146.1|AE004889_9
            (AE004889) DnaJ protein [Pseudomonas aeruginosa]
            Length = 377

Frame  3 hits (HSPs):       _________________________                     
                        __________________________________________________
Database sequence:     |                   |                   |          | 377
                       0                 150                 300

  Plus Strand HSPs:

 Score = 380 (133.8 bits), Expect = 4.0e-34, P = 4.0e-34
 Identities = 87/184 (47%), Positives = 108/184 (58%), Frame = +3

Query:     6 REPG---AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLK---GSGMGMGDFSNPF-DLF 164
             R PG   AE KFKE + AYEVLSD  KR+ YD++G AG+    G G G G     F D+F
Sbjct:    36 RNPGDKEAEDKFKEANEAYEVLSDASKRAAYDQYGHAGVDPNMGGGAGAGFGGASFSDIF 95

Query:   165 ESLFEGMNRGAGSRG-SWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGS 341
               +F     G G+RG S  GA  G D  Y+L L+ +EAV G    I +  L  C TCNGS
Sbjct:    96 GDVFSDFFGGGGARGGSRGGAQRGADLRYTLDLDLEEAVRGTTVTIRVPTLVGCKTCNGS 155

Query:   342 GAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXL 518
             GAKPGTTP  C TCGG G+V        G F    TC  C+GTG+ IS PC +C G G +
Sbjct:   156 GAKPGTTPVTCTTCGGIGQVRMQQ----GFFSVQQTCPRCHGTGKMISDPCGSCHGQGRV 211

Query:   519 KKSKRISL 542
             ++ K +S+
Sbjct:   212 EEQKTLSV 219


 >gi|544177|sp|Q05646|DNAJ_ERYRH  CHAPERONE PROTEIN DNAJ
            >gi|148506|gb|AAA71922.1| (L08110) dnaJ [Erysipelothrix
            rhusiopathiae]
            Length = 370

Frame  3 hits (HSPs):        _________________________                    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                    |                   |         | 370
                       0                  150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       21..37
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       47..67
   DOMO                 DM00098: NT-DNAJDOMAIN                   1..101
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              125..159
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              161..210
   DOMO                 DM00156: NT-DNAJDOMAIN                   212..288
   DOMO                 DM00156: NT-DNAJDOMAIN                   290..369
   Entrez               Domain: DNAJ-LIKE.                       4..72
   Entrez               Domain: GLY-RICH.                        77..106
   Entrez               Repetitive region: CXXCXGXG MOTIF.       147..154
   Entrez               Repetitive region: CXXCXGXG MOTIF.       164..171
   Entrez               Repetitive region: CXXCXGXG MOTIF.       190..197
   Entrez               Repetitive region: CXXCXGXG MOTIF.       204..211
   PFAM                 DnaJ: DnaJ domain                        6..70
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 134..218
   PFAM                 DnaJ_C: DnaJ C terminal region           231..352
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           17..36
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          47..67
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         139..158
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          164..174
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           182..200
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          202..217
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         221..237
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        267..284
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..67
   PRODOM               PD160330: DNAJ_ERYRH                     107..132
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       134..215
   PRODOM               PD149643: DNAJ(27)                       220..265
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       267..348
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 147..152
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 204..209
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 372 (131.0 bits), Expect = 2.8e-33, P = 2.8e-33
 Identities = 76/181 (41%), Positives = 105/181 (58%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGL-KGSGMGMGDFSNPFDLFESLFEG 182
             +E GAE KFKE+  AYEVLSD +KR+ YD+FG A   +G+G   G FS  FD F  +F  
Sbjct:    39 KEDGAEAKFKEVQEAYEVLSDSQKRANYDQFGHAAFDQGAGGFGGGFSGGFDDFGDIFSS 98

Query:   183 M--NRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPG 356
                  G G R + NG + G+D + S+ ++F EAVFG  K + ++  E C +C+GSGA   
Sbjct:    99 FFGGGGGGQRRNPNGPMKGQDRFMSMRIDFMEAVFGANKSVTLNVDEECTSCHGSGAHSK 158

Query:   357 TTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKSKR 533
                  C  CGG G+ V+   TP G+FQ   TC  C G+G+ I+  C  C G G    +KR
Sbjct:   159 DDIKTCSRCGGTGQTVTQQRTPFGVFQSQATCPDCGGSGKTITKRCGECHGKGF--NTKR 216

Query:   534 ISL 542
             + +
Sbjct:   217 VEV 219


 >gi|11132184|sp|O87778|DNAJ_LACSK  CHAPERONE PROTEIN DNAJ
            >gi|3688420|emb|CAA06942.1| (AJ006274) heat shock protein DnaJ
            [Lactobacillus sakei]
            Length = 383

Frame  3 hits (HSPs):       _________________________                     
                        __________________________________________________
Database sequence:     |                   |                   |          | 383
                       0                 150                 300

  Plus Strand HSPs:

 Score = 370 (130.2 bits), Expect = 4.6e-33, P = 4.6e-33
 Identities = 79/179 (44%), Positives = 101/179 (56%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKG-------SGMGMGDF---SNPF 155
             + P AE KFKE++ AYE LSD +KR+ YD++G AG+ G       +G G G F   +  F
Sbjct:    39 KAPDAEAKFKEVTEAYEALSDPQKRAAYDQYGHAGMNGGFGGGAGAGQGFGGFGGGAEGF 98

Query:   156 DLFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCN 335
               F+ +F     G G+R   NG   G D  Y + L F+EAVFG E +I  SR   C TC+
Sbjct:    99 GGFDDIFSSFF-GGGARQQPNGPRQGSDLQYRMDLKFEEAVFGKETKISYSREAECHTCH 157

Query:   336 GSGAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTG-EISTPCNTCSGDG 512
             GSGAKPGT+   C  C G G++     TPLG      TC  C GTG EI + C+TC G G
Sbjct:   158 GSGAKPGTSAETCHKCHGAGQIQVERQTPLGRMMSRETCDVCGGTGKEIKSKCDTCHGTG 217

 Score = 315 (110.9 bits), Expect = 3.1e-27, P = 3.1e-27
 Identities = 77/175 (44%), Positives = 97/175 (55%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKG-------SGMGMGDF---SNPF 155
             + P AE KFKE++ AYE LSD +KR+ YD++G AG+ G       +G G G F   +  F
Sbjct:    39 KAPDAEAKFKEVTEAYEALSDPQKRAAYDQYGHAGMNGGFGGGAGAGQGFGGFGGGAEGF 98

Query:   156 DLFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCN 335
               F+ +F     G G+R   NG   G D  Y + L F+EAVFG E +I  SR   C TC+
Sbjct:    99 GGFDDIFSSFF-GGGARQQPNGPRQGSDLQYRMDLKFEEAVFGKETKISYSREAECHTCH 157

Query:   336 GSGAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTG-EISTPCNTCSGDG 512
             GSGAKPGT+   C  C G G++     TPLG      TC  C GTG EI           
Sbjct:   158 GSGAKPGTSAETCHKCHGAGQIQVERQTPLGRMMSRETCDVCGGTGKEI----------- 206

Query:   513 XLKKSK 530
                KSK
Sbjct:   207 ---KSK 209


 >gi|6226599|sp|O06431|DNAJ_NITEU  CHAPERONE PROTEIN DNAJ
            >gi|3777487|dbj|BAA33936.1| (AB018706) DnaJ [Nitrosomonas europaea]
            Length = 369

Frame  3 hits (HSPs):        ________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                    |                   |         | 369
                       0                  150                 300
__________________

Annotated Domains:
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        76..111
   Entrez               Repetitive region: CXXCXGXG MOTIF.       141..148
   Entrez               Repetitive region: CXXCXGXG MOTIF.       158..165
   Entrez               Repetitive region: CXXCXGXG MOTIF.       180..187
   Entrez               Repetitive region: CXXCXGXG MOTIF.       194..201
   PFAM                 DnaJ: DnaJ domain                        5..53
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..67
   PRODOM               PD195470: DNAJ_NITEU                     69..90
   PRODOM               PD033728: DNAJ(14)                       92..125
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       128..207
   PRODOM               PD149643: DNAJ(27)                       210..255
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       257..339
   PRODOM               PD197599: DNAJ_NITEU                     341..368
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 141..146
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 194..199
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 369 (129.9 bits), Expect = 5.9e-33, P = 5.9e-33
 Identities = 81/175 (46%), Positives = 104/175 (59%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGS--GMGMGDFSNPF-DLFESLFEGMN 188
             AE++FK I  AYE+LSD  KR+ YD+FG AGL G   G G   FS+ F D+F  LF GM 
Sbjct:    43 AEERFKNIKEAYEILSDPNKRAAYDQFGHAGLNGGMGGAGAQGFSDAFSDIFSDLF-GM- 100

Query:   189 RGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPS 368
             RG G      GA    D  Y+L +  ++A  G E +I I R E C TC+GSGAKPGT+P 
Sbjct:   101 RGGGRSSVHRGA----DLRYNLEITLEQAARGAETQIRIPRQEVCDTCHGSGAKPGTSPK 156

Query:   369 RCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSGDGXLKKSKRISL 542
              C TC G G++        G F    TCS C G+G++ S PC  C G G +K+ K +S+
Sbjct:   157 TCPTCNGHGQIRMQQ----GFFSIQQTCSHCQGSGKVVSDPCGDCHGAGWVKRQKTLSV 211


 >gi|1352281|sp|P48207|DNAJ_FRATU  CHAPERONE PROTEIN DNAJ
            >gi|893246|gb|AAA69562.1| (L43367) putative [Francisella
            tularensis]
            Length = 371

Frame  3 hits (HSPs):       _________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                    |                   |         | 371
                       0                  150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       47..67
   DOMO                 DM00098: NT-DNAJDOMAIN                   1..118
   DOMO                 DM08665: CXXCXGXGMOTIFREPEAT             120..147
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              149..198
   DOMO                 DM00156: NT-DNAJDOMAIN                   200..276
   DOMO                 DM00156: NT-DNAJDOMAIN                   278..370
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        79..110
   Entrez               Repetitive region: CXXCXGXG MOTIF.       140..147
   Entrez               Repetitive region: CXXCXGXG MOTIF.       156..163
   Entrez               Repetitive region: CXXCXGXG MOTIF.       178..185
   Entrez               Repetitive region: CXXCXGXG MOTIF.       192..199
   PFAM                 DnaJ: DnaJ domain                        5..70
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 127..206
   PFAM                 DnaJ_C: DnaJ C terminal region           219..340
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           16..35
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          47..67
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         132..151
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          156..166
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           170..188
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          190..205
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         209..225
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        255..272
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..67
   PRODOM               PD033728: DNAJ(14)                       87..125
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       127..205
   PRODOM               PD149643: DNAJ(27)                       209..252
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       257..337
   PRODOM               PD171556: DNAJ_FRATU                     339..370
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
   PROSITE              DNAJ_CXXCXGXG: CXXCXGXG dnaJ domain sign 140..163
__________________


  Plus Strand HSPs:

 Score = 360 (126.7 bits), Expect = 5.3e-32, P = 5.3e-32
 Identities = 85/179 (47%), Positives = 108/179 (60%), Frame = +3

Query:     6 REPG---AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGL-KGSGMG-MGDFSNPFDLF-- 164
             R PG   AE KFKEIS AYE+LSDD KRS YD+FG AG+ + SG G  G F + FD F  
Sbjct:    36 RNPGDKEAEIKFKEISEAYEILSDDSKRSRYDQFGHAGVNQQSGFGGTGGFEDIFDTFFG 95

Query:   165 ESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSG 344
                  G NR   SRGS        D  Y+L +  +EA FG+EKEI I R+ESC +C+G+G
Sbjct:    96 GGTSRGSNRSRASRGS--------DLEYTLEITLEEAFFGVEKEITIPRMESCDSCDGTG 147

Query:   345 AKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTG-EISTPCNTCSGDGXLK 521
             +K   + + C  C GQG +        G F    TC  CNGTG  I+ PC+ C G+G +K
Sbjct:   148 SK-SRSKTTCHACHGQGTIRRQQ----GFFAFEQTCPVCNGTGYSITDPCDACYGNGKVK 202

Query:   522 KSKRISL 542
             K K + +
Sbjct:   203 KQKTLKV 209


 >gi|118719|sp|P08622|DNAJ_ECOLI  CHAPERONE PROTEIN DNAJ (HEAT SHOCK PROTEIN J)
            (HSP40) >gi|72228|pir||HHECDJ heat shock protein dnaJ - Escherichia
            coli >gi|145769|gb|AAA23693.1| (M12565) heat shock protein dnaJ
            [Escherichia coli] >gi|216441|dbj|BAA01292.1| (D10483) DnaJ
            [Escherichia coli] >gi|1786197|gb|AAC73126.1| (AE000112) chaperone
            with DnaK; heat shock protein [Escherichia coli K12]
            Length = 376

Frame  3 hits (HSPs):        ________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 376
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       47..67
   DOMO                 DM00098: NT-DNAJDOMAIN                   1..95
   DOMO                 DM08665: CXXCXGXGMOTIFREPEAT             97..151
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              153..203
   DOMO                 DM00156: NT-DNAJDOMAIN                   205..281
   DOMO                 DM00156: NT-DNAJDOMAIN                   283..375
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        77..114
   Entrez               Repetitive region: CXXCXGXG MOTIF.       144..151
   Entrez               Repetitive region: CXXCXGXG MOTIF.       161..168
   Entrez               Repetitive region: CXXCXGXG MOTIF.       183..190
   Entrez               Repetitive region: CXXCXGXG MOTIF.       197..204
   PFAM                 DnaJ: DnaJ domain                        4..69
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 130..210
   PFAM                 DnaJ_C: DnaJ C terminal region           223..344
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           15..34
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          46..66
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         135..154
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          160..170
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           174..192
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          194..209
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         213..229
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        259..276
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..66
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       130..209
   PRODOM               PD149643: DNAJ(27)                       212..257
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       259..341
   PRODOM               PD001578: DNAJ(2) O32465(1)              343..374
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 144..149
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 197..202
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 359 (126.4 bits), Expect = 6.8e-32, P = 6.8e-32
 Identities = 79/175 (45%), Positives = 99/175 (56%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPFDLFESLFEGM--NR 191
             AE KFKEI  AYEVL+D +KR+ YD++G A  +  GMG G F    D F  +F  +  + 
Sbjct:    43 AEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGAD-FSDIFGDVFGDI 101

Query:   192 GAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPSR 371
               G RG    A  G D  Y++ L  +EAV G+ KEI I  LE C  C+GSGAKPGT P  
Sbjct:   102 FGGGRGRQRAA-RGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQT 160

Query:   372 CXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKSKRISL 542
             C TC G G+V        G F    TC  C G G  I  PCN C G G +++SK +S+
Sbjct:   161 CPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSV 214


 >gi|12512693|gb|AAG54315.1|AE005178_5  (AE005178) chaperone with DnaK; heat
            shock protein [Escherichia coli O157:H7]
            Length = 376

Frame  3 hits (HSPs):        ________________________                     
                        __________________________________________________
Database sequence:     |                   |                   |          | 376
                       0                 150                 300

  Plus Strand HSPs:

 Score = 359 (126.4 bits), Expect = 6.8e-32, P = 6.8e-32
 Identities = 79/175 (45%), Positives = 99/175 (56%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPFDLFESLFEGM--NR 191
             AE KFKEI  AYEVL+D +KR+ YD++G A  +  GMG G F    D F  +F  +  + 
Sbjct:    43 AEAKFKEIKEAYEVLTDSQKRAAYDQYGHAAFEQGGMGGGGFGGGAD-FSDIFGDVFGDI 101

Query:   192 GAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPSR 371
               G RG    A  G D  Y++ L  +EAV G+ KEI I  LE C  C+GSGAKPGT P  
Sbjct:   102 FGGGRGRQRAA-RGADLRYNMELTLEEAVRGVTKEIRIPTLEECDVCHGSGAKPGTQPQT 160

Query:   372 CXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKSKRISL 542
             C TC G G+V        G F    TC  C G G  I  PCN C G G +++SK +S+
Sbjct:   161 CPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCNKCHGHGRVERSKTLSV 214


 >gi|1706465|sp|P50025|DNAJ_LEGPN  CHAPERONE PROTEIN DNAJ
            >gi|1046215|gb|AAA80278.1| (U15010) heat-shock protein [Legionella
            pneumophila]
            Length = 379

Frame  3 hits (HSPs):       _________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 379
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       47..67
   DOMO                 DM00098: NT-DNAJDOMAIN                   1..104
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              161..207
   DOMO                 DM00156: NT-DNAJDOMAIN                   210..285
   DOMO                 DM00156: NT-DNAJDOMAIN                   287..378
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        73..110
   Entrez               Repetitive region: CXXCXGXG MOTIF.       148..155
   Entrez               Repetitive region: CXXCXGXG MOTIF.       165..172
   Entrez               Repetitive region: CXXCXGXG MOTIF.       187..194
   Entrez               Repetitive region: CXXCXGXG MOTIF.       201..208
   PFAM                 DnaJ: DnaJ domain                        5..70
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 135..215
   PFAM                 DnaJ_C: DnaJ C terminal region           228..349
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           16..35
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          47..67
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         140..159
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          165..175
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           179..197
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          199..214
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         218..234
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        264..281
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..67
   PRODOM               PD033728: DNAJ(14)                       96..132
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       135..213
   PRODOM               PD149643: DNAJ(27)                       217..261
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       265..344
   PRODOM               PD171559: DNAJ_LEGPN                     346..378
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 201..206
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 357 (125.7 bits), Expect = 1.1e-31, P = 1.1e-31
 Identities = 78/183 (42%), Positives = 106/183 (57%), Frame = +3

Query:     6 REPG---AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLK---GSGMG-MGDFSNPFDLF 164
             R PG   AE+KFKEI  AY +LSD +KR+ YD+FG AG+    G G G  G F    D+F
Sbjct:    36 RNPGDTSAEEKFKEIQKAYNILSDKQKRAAYDQFGHAGVDPSMGGGPGGFGGFGGFGDVF 95

Query:   165 ESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSG 344
             E +FE +  G    G  +    G D  +++ L  +EA  G E EI + R  +C  C GSG
Sbjct:    96 EDIFENIFSGGRGHGRQSRGQRGADLQFNVQLTLEEAAIGKEVEITVPRHGTCTVCEGSG 155

Query:   345 AKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSGDGXLK 521
             AK GT+P  C TC G G+V        G F    TC +C+G G+I S PC +C G G ++
Sbjct:   156 AKKGTSPKTCETCQGMGQV----RIQQGFFSIQQTCPTCHGEGKIISDPCASCHGQGRVR 211

Query:   522 KSKRISL 542
             +SK+I++
Sbjct:   212 ESKKINV 218


 >gi|6226598|sp|P71443|DNAJ_LEPIN  CHAPERONE PROTEIN DNAJ
            >gi|2735762|gb|AAC35417.1| (AF007813) heat shock protein DnaJ
            [Leptospira interrogans]
            Length = 369

Frame  3 hits (HSPs):        _________________________                    
Annotated Domains:      ____________      ______________________________  
                        __________________________________________________
Database sequence:     |                    |                   |         | 369
                       0                  150                 300
__________________

Annotated Domains:
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Repetitive region: CXXCXGXG MOTIF.       150..157
   Entrez               Repetitive region: CXXCXGXG MOTIF.       167..174
   Entrez               Repetitive region: CXXCXGXG MOTIF.       189..196
   Entrez               Repetitive region: CXXCXGXG MOTIF.       203..210
   PFAM                 DnaJ: DnaJ domain                        5..35
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..67
   PRODOM               PD195469: DNAJ_LEPIN                     69..89
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       137..216
   PRODOM               PD149643: DNAJ(27)                       219..263
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       266..349
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 357 (125.7 bits), Expect = 1.1e-31, P = 1.1e-31
 Identities = 78/178 (43%), Positives = 109/178 (61%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGS--GMGMG---DFSNPF-DLFESLFE 179
             +E+KFKE + AYE+L D +KR  YD+FG+AG+ G   G G G   DFS+ F D+F   F 
Sbjct:    43 SEEKFKEATEAYEILRDPKKRQAYDQFGKAGVSGGAGGFGQGAYTDFSDIFGDIFGDFFG 102

Query:   180 GMNRGAG-SRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPG 356
             G  R +G   G  +G   G D  Y+L ++ ++A  G E +IEI RLESC  CNGSGA  G
Sbjct:   103 G-GRSSGFGGGRRSGPQRGSDLRYNLEVSLEDAALGREYKIEIPRLESCVDCNGSGASKG 161

Query:   357 TTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSGDGXLKKSKR 533
             ++P+ C  CGG G++  +     G F  + TC +C G G I S PC +C G G  +K + 
Sbjct:   162 SSPATCPDCGGSGQIRRTQ----GFFSVATTCPTCRGKGTIISNPCRSCGGQGLQEKRRT 217

Query:   534 ISL 542
             I++
Sbjct:   218 INI 220


 >gi|1169372|sp|P45555|DNAJ_STAAU  CHAPERONE PROTEIN DNAJ (HSP40)
            >gi|522106|dbj|BAA06360.1| (D30690) HSP40 [Staphylococcus aureus]
            Length = 379

Frame  3 hits (HSPs):       __________________________                    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 379
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       46..66
   DOMO                 DM00098: NT-DNAJDOMAIN                   1..106
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              162..212
   DOMO                 DM00156: NT-DNAJDOMAIN                   214..290
   DOMO                 DM00156: NT-DNAJDOMAIN                   292..378
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        69..108
   Entrez               Repetitive region: CXXCXGXG MOTIF.       149..156
   Entrez               Repetitive region: CXXCXGXG MOTIF.       166..173
   Entrez               Repetitive region: CXXCXGXG MOTIF.       192..199
   Entrez               Repetitive region: CXXCXGXG MOTIF.       206..213
   PFAM                 DnaJ: DnaJ domain                        5..69
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 136..220
   PFAM                 DnaJ_C: DnaJ C terminal region           233..354
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           16..35
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          46..66
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         141..160
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          166..176
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           184..202
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          204..219
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         223..239
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        269..286
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..66
   PRODOM               PD033728: DNAJ(14)                       98..134
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       136..217
   PRODOM               PD149643: DNAJ(27)                       223..267
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       269..352
   PRODOM               PD171545: DNAJ_STAAU                     354..378
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 149..154
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        46..65
__________________


  Plus Strand HSPs:

 Score = 356 (125.3 bits), Expect = 1.4e-31, P = 1.4e-31
 Identities = 80/186 (43%), Positives = 102/186 (54%), Frame = +3

Query:     6 REPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMG----DFSNPFDL---- 161
             +E GA++KFKEIS AYEVLSDD KR+  D+FG  G +G G G G    DF          
Sbjct:    38 KEEGADEKFKEISEAYEVLSDDNKRATIDQFGHDGPQGFG-GQGFNGSDFGGFSGFGGGG 96

Query:   162 FESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGS 341
             FE +F     G GS+   N    G+D  Y++ L F+EAVFG  KEI I +  +C TC+G 
Sbjct:    97 FEDIFSSFF-GGGSQRDPNAPQKGDDLQYTMTLTFEEAVFGTTKEISIRKDVTCETCHGD 155

Query:   342 GAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTG-EISTPCNTCSGDGXL 518
             GAKPGT+   C  C G G V     T LG  +    C  CNG+G E    C TC G G  
Sbjct:   156 GAKPGTSKKTCSYCNGAGHVAVEQNTILGRVRTEQVCPKCNGSGQEFEEACPTCHGKGTE 215

Query:   519 KKSKRISL 542
              K+ ++ +
Sbjct:   216 NKTVKLEV 223


 >gi|11132612|sp|Q9ZFC5|DNAJ_METSS  CHAPERONE PROTEIN DNAJ
            >gi|4008081|gb|AAC95379.1| (AF106835) putative DnaJ [Methylovorus
            sp. SS1]
            Length = 371

Frame  3 hits (HSPs):        ________________________                     
                        __________________________________________________
Database sequence:     |                    |                   |         | 371
                       0                  150                 300

  Plus Strand HSPs:

 Score = 347 (122.2 bits), Expect = 1.3e-30, P = 1.3e-30
 Identities = 75/177 (42%), Positives = 107/177 (60%), Frame = +3

Query:    12 PGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLK---GSG--MGMGDFSNPF-DLFESL 173
             P AE+ FKE   AYEVLSD++KR+ YD++G AG+    G G   G G+F++ F D+F  +
Sbjct:    41 PKAEESFKEAKEAYEVLSDEQKRAAYDQYGHAGVDPSAGPGPRQGFGNFADAFGDIFGDI 100

Query:   174 FEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKP 353
             F G   G G+R S      G D  Y++ ++ ++A    E +I I  +  C TC+GSGA+P
Sbjct:   101 FGG---GGGNRRS--NVYRGADLRYNMEISLEDAARRTETKIRIPVMSECETCHGSGARP 155

Query:   354 GTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKSK 530
             GT P  C TCGG G+V        G F    TC  C+G+G+ +  PC +C G G +KK K
Sbjct:   156 GTQPVTCTTCGGHGQVRMQQ----GFFSVQQTCPKCHGSGKMVKEPCPSCQGAGRVKKHK 211

Query:   531 RISL 542
              +S+
Sbjct:   212 TLSV 215


 >gi|461943|sp|Q05980|DNAJ_BRUOV  CHAPERONE PROTEIN DNAJ >gi|420799|pir||B47042
            heat shock protein dnaJ - Brucella ovis >gi|144116|gb|AAC36133.1|
            (M95799) heat shock protein 40 [Brucella ovis]
            Length = 375

Frame  3 hits (HSPs):        ________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 375
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       19..35
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       46..66
   DOMO                 DM00098: NT-DNAJDOMAIN                   1..105
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              159..205
   DOMO                 DM00156: NT-DNAJDOMAIN                   207..283
   DOMO                 DM00156: NT-DNAJDOMAIN                   285..369
   Entrez               Domain: DNAJ-LIKE.                       2..71
   Entrez               Domain: GLY-RICH.                        77..106
   Entrez               Repetitive region: CXXCXGXG MOTIF.       146..153
   Entrez               Repetitive region: CXXCXGXG MOTIF.       163..170
   Entrez               Repetitive region: CXXCXGXG MOTIF.       185..192
   Entrez               Repetitive region: CXXCXGXG MOTIF.       199..206
   PFAM                 DnaJ: DnaJ domain                        4..69
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 133..213
   PFAM                 DnaJ_C: DnaJ C terminal region           226..348
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           15..34
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          46..66
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         138..157
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          163..173
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           177..195
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          197..212
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         216..232
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        262..279
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        2..66
   PRODOM               PD033728: DNAJ(14)                       94..130
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       133..207
   PRODOM               PD149643: DNAJ(27)                       215..260
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       262..345
   PRODOM               PD171553: DNAJ_BRUOV                     347..374
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 199..204
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        46..65
__________________


  Plus Strand HSPs:

 Score = 344 (121.1 bits), Expect = 2.6e-30, P = 2.6e-30
 Identities = 75/178 (42%), Positives = 100/178 (56%), Frame = +3

Query:     9 EPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPF-------DLFE 167
             +P AE+KFKEI  AYE L D +KR+ YDRFG A  +  GMG G F N F       D+FE
Sbjct:    39 DPEAERKFKEIGEAYETLKDPQKRAAYDRFGHAAFENGGMG-GGFGNGFAGAGGFADIFE 97

Query:   168 SLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGA 347
              +F  M    G R   NGA  G D  Y++ +  +EA  G   +I +    +C  C+GSGA
Sbjct:    98 DIFGEM---MGGRRRRNGAERGADLRYNMEVTLEEAYAGKTAQIRVPTSITCDECSGSGA 154

Query:   348 KPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSGDGXLKK 524
             KPG+ P+ C  C G GR  ++     G F    TC  CNG G+I   PC  C G G + +
Sbjct:   155 KPGSQPTTCTMCSGSGRCRAAQ----GFFSVERTCPGCNGRGQIIKDPCKKCHGQGRVDR 210

Query:   525 SKRISL 542
              + +S+
Sbjct:   211 GRSLSV 216


 >gi|11132181|sp|O87385|DNAJ_VIBHA  CHAPERONE PROTEIN DNAJ
            >gi|3660670|gb|AAC61693.1| (AF055368) heat shock protein DnaJ
            homolog [Vibrio harveyi]
            Length = 385

Frame  3 hits (HSPs):        ________________________                     
                        __________________________________________________
Database sequence:     |                   |                  |           | 385
                       0                 150                300

  Plus Strand HSPs:

 Score = 344 (121.1 bits), Expect = 2.6e-30, P = 2.6e-30
 Identities = 74/180 (41%), Positives = 107/180 (59%), Frame = +3

Query:     9 EPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEA-------GLKGSGMGMG--DFSNPF-D 158
             +  A  KFKE+  +YE+L+D +K++ YD++G A       G  G G G G  DF + F D
Sbjct:    40 DESAADKFKEVKESYEILTDPQKKAAYDQYGHAAFEQGGGGFGGGGFGGGGADFGDIFGD 99

Query:   159 LFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNG 338
             +F  +F G  RG G + +  GA    D  Y++ L+ +EAV G+ KEIE+  L  C TC+G
Sbjct:   100 VFGDIFGGGRRGGGQQRAQRGA----DLRYNMELSLEEAVRGVSKEIEVPTLVHCDTCDG 155

Query:   339 SGAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEISTPCNTCSGDGXL 518
             SGAK G++   C TC G G+V        G F    TC +C+G G+I  PCN C G G  
Sbjct:   156 SGAKKGSSAETCGTCHGHGQVQMRQ----GFFAVQQTCPTCHGKGKIIRPCNECHGQGRK 211

Query:   519 KKSKRISL 542
             +K+K +++
Sbjct:   212 QKTKTLNV 219


 >gi|11132035|sp|O08356|DNAJ_RHOSP  CHAPERONE PROTEIN DNAJ
            >gi|2058266|dbj|BAA19797.1| (D78133) DnaJ protein [Rhodopseudomonas
            sp.]
            Length = 379

Frame  3 hits (HSPs):        ________________________                     
                        __________________________________________________
Database sequence:     |                   |                   |          | 379
                       0                 150                 300

  Plus Strand HSPs:

 Score = 343 (120.7 bits), Expect = 3.4e-30, P = 3.4e-30
 Identities = 78/178 (43%), Positives = 104/178 (58%), Frame = +3

Query:     9 EPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLK----GSGMGMG-DFSNPF-DLFES 170
             +P  E KFKEI+ AYEVL D +KR+ YDR+G A  +    G G G G  F++ F D+FE 
Sbjct:    42 DPQCEIKFKEINEAYEVLKDGDKRAAYDRYGHAAFEQGGFGGGAGFGAGFASSFSDIFED 101

Query:   171 LFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAK 350
             LF GM   A  RG   G   G D  Y++ +  ++A  G   +IEI    +C  C+G+GAK
Sbjct:   102 LF-GM---AAQRGRGTGRERGADLRYNMEITLEDAFKGKTAQIEIPVSVTCEACSGTGAK 157

Query:   351 PGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKS 527
              GT P  C TCGG GRV  +     G F    TC SC G G+ I  PC +C+G G + K 
Sbjct:   158 AGTKPKTCSTCGGAGRVRQAQ----GFFTLERTCPSCQGRGQTIEDPCPSCTGSGRVTKE 213

Query:   528 KRISL 542
             + +S+
Sbjct:   214 RTLSV 218


 >gi|12644061|sp|O34242|DNAJ_VIBCH  CHAPERONE PROTEIN DNAJ
            >gi|11277155|pir||D82270 dnaJ protein VC0856 [imported] - Vibrio
            cholerae (group O1 strain N16961) >gi|9655309|gb|AAF94018.1|
            (AE004171) dnaJ protein [Vibrio cholerae]
            Length = 381

Frame  3 hits (HSPs):        ________________________                     
                        __________________________________________________
Database sequence:     |                   |                   |          | 381
                       0                 150                 300

  Plus Strand HSPs:

 Score = 342 (120.4 bits), Expect = 4.3e-30, P = 4.3e-30
 Identities = 77/180 (42%), Positives = 106/180 (58%), Frame = +3

Query:     9 EPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEA-------GLKGSGMGMG--DFSNPF-D 158
             + GA +KFKE+  AYE+L+D +K++ YD++G A       G  G G G G  DF + F D
Sbjct:    40 DAGAAEKFKEVKEAYEILTDAQKKAAYDQYGHAAFEQGAGGFGGGGFGGGGADFGDIFGD 99

Query:   159 LFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNG 338
             +F  +F G  RG G R     A  G D  Y++ L+ +EAV G  KEIE+  L  C  C+G
Sbjct:   100 VFGDIFGGGRRGGGPR-----AQRGSDLRYNMELSLEEAVRGCSKEIEVPTLVHCDACDG 154

Query:   339 SGAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSGDGX 515
             SGAK GT+   C TC G G+V        G F    TC +C+G G+I   PCN C G G 
Sbjct:   155 SGAKKGTSAQTCGTCHGHGQVQMRQ----GFFAVQQTCPTCHGKGKIIKDPCNVCHGQGR 210

Query:   516 LKKSKRISL 542
              +K+K +++
Sbjct:   211 KQKTKTLNV 219


 >gi|6855462|dbj|BAA90474.1|  (AB009842) DnaJ [Brevibacillus choshinensis]
            Length = 375

Frame  3 hits (HSPs):        ________________________                     
                        __________________________________________________
Database sequence:     |                   |                   |          | 375
                       0                 150                 300

  Plus Strand HSPs:

 Score = 340 (119.7 bits), Expect = 7.0e-30, P = 7.0e-30
 Identities = 75/176 (42%), Positives = 101/176 (57%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEA----GLKGSGM---GMGDFSNPFDLFESLF 176
             AE+KFKE+  AY+VLS+ +KR+ YDRFG      G  G G    GMG F + FD+F   F
Sbjct:    41 AEEKFKEVKEAYDVLSEPQKRAQYDRFGHQDPNQGFGGGGFDASGMGGFGDIFDMF---F 97

Query:   177 EGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPG 356
              G   G G R + N    G D  + L + F E VFG E ++EI +   C TC+GSGAKPG
Sbjct:    98 -G---GGGRRANPNAPRKGSDLQFGLSIEFTETVFGKETDVEIPKEAECDTCHGSGAKPG 153

Query:   357 TTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSGDGXLKKSKR 533
             T    C TC G G+   +  TP G       C++C G G++    C++C G G +K  ++
Sbjct:   154 TGVETCKTCSGTGQQEVAANTPFGRIVNRRVCTTCEGKGKVFKEKCSSCRGSGRVKVRRK 213

Query:   534 ISL 542
             I L
Sbjct:   214 IHL 216


 >gi|2494152|sp|Q60004|DNAJ_SALTY  CHAPERONE PROTEIN DNAJ
            >gi|1389759|gb|AAB02911.1| (U58360) DnaJ [Salmonella typhimurium]
            Length = 379

Frame  3 hits (HSPs):        ________________________                     
Annotated Domains:      _______________  _________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 379
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       47..67
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        77..113
   Entrez               Repetitive region: CXXCXGXG MOTIF.       147..154
   Entrez               Repetitive region: CXXCXGXG MOTIF.       164..171
   Entrez               Repetitive region: CXXCXGXG MOTIF.       186..193
   Entrez               Repetitive region: CXXCXGXG MOTIF.       200..207
   PFAM                 DnaJ: DnaJ domain                        4..69
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 133..213
   PFAM                 DnaJ_C: DnaJ C terminal region           226..347
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           15..34
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          46..66
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         138..157
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          163..173
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           177..195
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          197..212
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         216..232
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        262..279
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..66
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       133..212
   PRODOM               PD149643: DNAJ(27)                       215..260
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       262..342
   PRODOM               PD001578: DNAJ(2) O32465(1)              346..377
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 147..152
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 338 (119.0 bits), Expect = 1.1e-29, P = 1.1e-29
 Identities = 81/175 (46%), Positives = 103/175 (58%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMG---------DFSNPF-DLFE 167
             AE KFKEI  AYEVL+D +KR+ YD++G A  +  GMG G         DFS+ F D+F 
Sbjct:    43 AEAKFKEIKEAYEVLTDAQKRAAYDQYGHAAFEQGGMGGGFGGGFNGGADFSDIFGDVFG 102

Query:   168 SLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGA 347
              +F G   G G + +  GA    D  Y++ L  +EAV G+ KEI I  LE C  C+GSGA
Sbjct:   103 DIFGG---GRGRQRAARGA----DLRYNMDLTLEEAVRGVTKEIRIPTLEECDVCHGSGA 155

Query:   348 KPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKK 524
             K GT P  C TC G G+V        G F    TC  C G G  I  PC+ C G G ++K
Sbjct:   156 KAGTQPQTCPTCHGSGQVQMRQ----GFFAVQQTCPHCQGRGTLIKDPCHKCHGHGRVEK 211

Query:   525 SKRISL 542
             SK +S+
Sbjct:   212 SKTLSV 217


 >gi|11132092|sp|O52065|DNAJ_PASHA  CHAPERONE PROTEIN DNAJ
            >gi|2738814|gb|AAB94555.1| (AF017730) DnaJ; chaperone [Mannheimia
            haemolytica]
            Length = 379

Frame  3 hits (HSPs):        ________________________                     
                        __________________________________________________
Database sequence:     |                   |                   |          | 379
                       0                 150                 300

  Plus Strand HSPs:

 Score = 337 (118.6 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 70/177 (39%), Positives = 101/177 (57%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSN----PFDLFESLFEGM 185
             +E+KFKEI+ AY+VL+D EK+++YD++G A  +  G G G F       F  FE +F  M
Sbjct:    43 SEEKFKEITEAYDVLTDSEKKAMYDQYGHAAFEQGGAGAGGFGGFGGGGFGGFEDIFSEM 102

Query:   186 -NRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTT 362
                G G  G     + G+D  Y + +  +EAV G +K+I I  L  C TC+G+GA+ G+ 
Sbjct:   103 FGGGFGGGGRRQRVVRGDDLRYDIEITLEEAVKGCKKDIRIHTLAECDTCHGTGAEAGSK 162

Query:   363 PSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKSKRIS 539
                C  C G GR+        G F     C SC+GTG+ I  PC +C GDG + K+K +S
Sbjct:   163 VETCSHCHGSGRIRRQQ----GFFVTDAVCPSCHGTGKRIEKPCRSCHGDGRVHKAKNLS 218

Query:   540 L 542
             +
Sbjct:   219 V 219


 >gi|12721036|gb|AAK02824.1|  (AE006111) DnaJ [Pasteurella multocida]
            Length = 372

Frame  3 hits (HSPs):        ________________________                     
                        __________________________________________________
Database sequence:     |                    |                   |         | 372
                       0                  150                 300

  Plus Strand HSPs:

 Score = 337 (118.6 bits), Expect = 1.4e-29, P = 1.4e-29
 Identities = 73/174 (41%), Positives = 102/174 (58%), Frame = +3

Query:    21 EQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNP-F-DLFESLFEGMNRG 194
             E+KFKEI  AYEVLSD +KR+ YD++G A  +  G G G FS   F D+F  +F  +  G
Sbjct:    44 EEKFKEIQEAYEVLSDKQKRANYDQYGHAAFEQGGFGGGGFSGADFGDIFGDMFGDIFGG 103

Query:   195 AGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPSRC 374
               +R      + G+D  Y L ++ +EAV G  K+I+I+ L  C +C+GSGA+ G+    C
Sbjct:   104 GRAR---QRVVRGDDLRYDLEISLEEAVRGTTKDIQINTLAHCDSCDGSGAEKGSKVETC 160

Query:   375 XTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKSKRISL 542
              TC G GRV        G F     C SC+G+G+ I  PC +C GDG + K K +S+
Sbjct:   161 STCHGAGRVRRQQ----GFFVTEQVCPSCHGSGKKIEKPCKSCHGDGRVHKKKNLSV 213


 >gi|1352282|sp|P48208|DNAJ_HAEDU  CHAPERONE PROTEIN DNAJ
            >gi|825787|gb|AAA67299.1| (U25996) DnaJ [Haemophilus ducreyi]
            Length = 377

Frame  3 hits (HSPs):        ________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 377
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       47..67
   DOMO                 DM00098: NT-DNAJDOMAIN                   1..102
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              128..159
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              161..206
   DOMO                 DM00156: NT-DNAJDOMAIN                   208..284
   DOMO                 DM00156: NT-DNAJDOMAIN                   286..376
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        77..108
   Entrez               Repetitive region: CXXCXGXG MOTIF.       147..154
   Entrez               Repetitive region: CXXCXGXG MOTIF.       164..171
   Entrez               Repetitive region: CXXCXGXG MOTIF.       186..193
   Entrez               Repetitive region: CXXCXGXG MOTIF.       200..207
   PFAM                 DnaJ: DnaJ domain                        5..70
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 134..214
   PFAM                 DnaJ_C: DnaJ C terminal region           227..348
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           16..35
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          47..67
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         139..158
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          164..174
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           178..196
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          198..213
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         217..233
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        263..280
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..67
   PRODOM               PD033728: DNAJ(14)                       94..131
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       134..212
   PRODOM               PD149643: DNAJ(27)                       216..261
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       263..344
   PRODOM               PD171557: DNAJ_HAEDU                     346..376
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 147..152
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 336 (118.3 bits), Expect = 1.9e-29, P = 1.9e-29
 Identities = 70/175 (40%), Positives = 104/175 (59%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLK-GSGMG-MGDFSNPFDLFESLFEGMNR 191
             +E+KFK+I+ AYE+L+DD+KR+ YD++G A  + GS  G    F   F  FE +F  M  
Sbjct:    43 SEEKFKQITEAYEILTDDQKRAAYDQYGHAAFEQGSSNGGFNGFGGGFGGFEDIFSEMFG 102

Query:   192 GAGSRGSWNG-AIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPS 368
             G    GS     + G+D  Y + ++ +EAV G +K+I +S L  C  C+G+GA+ GT   
Sbjct:   103 GGFGGGSRRQHVVRGQDLRYDIEISLEEAVKGCKKDIRLSTLAECDNCHGTGAEAGTKVE 162

Query:   369 RCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKSKRISL 542
              C  C G GR+        G F     C SC+GTG+ I  PC++C GDG ++K+K +S+
Sbjct:   163 NCPHCHGAGRIRRQQ----GFFVTEAVCPSCHGTGKKIEKPCHSCHGDGRVQKAKNLSV 217


 >gi|3121994|sp|P94319|DNAJ_BRAJA  CHAPERONE PROTEIN DNAJ
            Length = 377

Frame  3 hits (HSPs):        ________________________                     
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 377
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       23..39
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       50..70
   Entrez               Domain: DNAJ-LIKE.                       6..75
   Entrez               Domain: GLY-RICH.                        79..118
   Entrez               Repetitive region: CXXCXGXG MOTIF.       148..155
   Entrez               Repetitive region: CXXCXGXG MOTIF.       165..172
   Entrez               Repetitive region: CXXCXGXG MOTIF.       187..194
   Entrez               Repetitive region: CXXCXGXG MOTIF.       201..208
   PFAM                 DnaJ: DnaJ domain                        8..73
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 135..215
   PFAM                 DnaJ_C: DnaJ C terminal region           228..350
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           19..38
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          50..70
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         140..159
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          165..175
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           179..197
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          199..214
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         218..234
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        264..281
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        6..70
   PRODOM               PD033728: DNAJ(14)                       98..132
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       135..214
   PRODOM               PD149643: DNAJ(27)                       217..262
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       264..347
   PRODOM               PD154774: DNAJ(1) O08356(1)              349..376
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        50..69
__________________


  Plus Strand HSPs:

 Score = 336 (118.3 bits), Expect = 1.9e-29, P = 1.9e-29
 Identities = 82/180 (45%), Positives = 104/180 (57%), Frame = +3

Query:     6 REPG---AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLK----GSGMGMG-DFSNPF-D 158
             R PG   +E KFKEI+ AYEVL D +KR+ YDRFG A  +    G G G G  F++ F D
Sbjct:    39 RNPGDDTSEVKFKEINEAYEVLKDKDKRAAYDRFGHAAFEQGGPGGGAGFGAGFASSFSD 98

Query:   159 LFESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNG 338
             +FE LF GM   AG RG   G   G D  Y++ +  +EA  G   +IEI    +C  C+G
Sbjct:    99 IFEDLF-GM---AGQRGR-GGRERGADLRYNMEITLEEAFGGKTAQIEIPVSVTCEACSG 153

Query:   339 SGAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGX 515
              GAK GT P  C TCGG GRV  S     G F    TC  C G G+ I   C +CSG G 
Sbjct:   154 IGAKAGTKPKTCSTCGGAGRVRQSQ----GFFTLERTCPGCQGRGQMIEDACPSCSGQGR 209

Query:   516 LKKSKRISL 542
             + + + +S+
Sbjct:   210 VTRERTLSV 218


 >gi|11132233|sp|P57107|DNAJ_NEIMA  CHAPERONE PROTEIN DNAJ
            >gi|11277169|pir||D81242 DnaJ protein NMA0209 [imported] -
            Neisseria meningitidis  (group B strain MD58, group A strain Z2491)
            >gi|7225280|gb|AAF40528.1| (AE002365) dnaJ protein [Neisseria
            meningitidis MC58] >gi|7378977|emb|CAB83522.1| (AL162752) DnaJ
            protein [Neisseria meningitidis Z2491]
            Length = 373

Frame  3 hits (HSPs):        ________________________                     
                        __________________________________________________
Database sequence:     |                   |                    |         | 373
                       0                 150                  300

  Plus Strand HSPs:

 Score = 334 (117.6 bits), Expect = 3.0e-29, P = 3.0e-29
 Identities = 76/175 (43%), Positives = 98/175 (56%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMG-MGDF-----SNPFDLFESLFE 179
             AE+KFKE+  AYE LSD EKR++YD++G A  +G G G  G F     +  FD F  +F 
Sbjct:    43 AEEKFKEVQKAYETLSDKEKRAMYDQYGHAAFEGGGQGGFGGFGGFGGAQGFD-FGDIFS 101

Query:   180 GMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGT 359
              M  G GS G       GED    + +  +EA  G++K I I   E+C  CNGSGAKPGT
Sbjct:   102 QMF-GGGS-GRAQPDYQGEDVQVGIEITLEEAAKGVKKRINIPTYEACDVCNGSGAKPGT 159

Query:   360 TPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKSKRI 536
             +P  C TC G G V         IF+   TC +C+G G+ I  PC  C G G  K  K +
Sbjct:   160 SPETCPTCKGSGTV----HIQQAIFRMQQTCPTCHGAGKHIKEPCVKCRGAGRNKAVKTV 215

Query:   537 SL 542
              +
Sbjct:   216 EV 217


 >gi|3122001|sp|O27352|DNAJ_METTH  CHAPERONE PROTEIN DNAJ >gi|7441913|pir||H69038
            heat shock protein dnaJ - Methanobacterium thermoautotrophicum
            (strain Delta H) >gi|2622399|gb|AAB85773.1| (AE000894) DnaJ protein
            [Methanothermobacter thermautotrophicus]
            Length = 376

Frame  3 hits (HSPs):        _________________________                    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 376
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       46..66
   Entrez               Domain: DNAJ-LIKE.                       2..71
   Entrez               Domain: GLY-RICH.                        73..118
   Entrez               Repetitive region: CXXCXGXG MOTIF.       148..155
   Entrez               Repetitive region: CXXCXGXG MOTIF.       165..172
   Entrez               Repetitive region: CXXCXGXG MOTIF.       191..198
   Entrez               Repetitive region: CXXCXGXG MOTIF.       205..212
   PFAM                 DnaJ: DnaJ domain                        5..69
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 135..219
   PFAM                 DnaJ_C: DnaJ C terminal region           232..353
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           16..35
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          46..66
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         140..159
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          165..175
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           183..201
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          203..218
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         222..238
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        268..285
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..66
   PRODOM               PD033728: DNAJ(14)                       88..132
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       135..218
   PRODOM               PD149643: DNAJ(27)                       221..266
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       268..351
   PRODOM               PD171543: DNAJ_METTH                     353..375
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        46..65
__________________


  Plus Strand HSPs:

 Score = 333 (117.2 bits), Expect = 3.8e-29, P = 3.8e-29
 Identities = 73/182 (40%), Positives = 100/182 (54%), Frame = +3

Query:     9 EPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPFDLFESLFEGMN 188
             +P A +KFKEIS AY VLSDDEKR+ YDRFG AG+   G    D  N  + FE +F G+ 
Sbjct:    39 DPDAAEKFKEISEAYAVLSDDEKRARYDRFGHAGM--DGFSQEDIFNNIN-FEDIFSGLG 95

Query:   189 RGAGS--------RGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSG 344
                G+         G  +G   G D  Y+L ++ ++A  G+E +I +   + C  C+GS 
Sbjct:    96 FDIGNIFDMFGFGGGRRHGPQRGADISYTLDISLEDAYNGLETDIRVPHTKKCPVCHGSR 155

Query:   345 AKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSGDGXLK 521
             A+PGT    C TCGG G+V     T LG      TC  C G G +   PC+ C+G G ++
Sbjct:   156 AEPGTGTRTCQTCGGSGQVRQVRNTILGQMMNITTCPDCQGEGTVVEKPCSNCNGKGVVR 215

Query:   522 KSKRI 536
             K+  I
Sbjct:   216 KTSTI 220


 >gi|6226597|sp|P77866|DNAJ_ACTAC  CHAPERONE PROTEIN DNAJ
            >gi|3550971|dbj|BAA32697.1| (D87753) DnaJ [Actinobacillus
            actinomycetemcomitans]
            Length = 375

Frame  3 hits (HSPs):        ________________________                     
Annotated Domains:      _______________  _________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 375
                       0                 150                 300
__________________

Annotated Domains:
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        77..110
   Entrez               Repetitive region: CXXCXGXG MOTIF.       145..152
   Entrez               Repetitive region: CXXCXGXG MOTIF.       162..169
   Entrez               Repetitive region: CXXCXGXG MOTIF.       184..191
   Entrez               Repetitive region: CXXCXGXG MOTIF.       198..205
   PFAM                 DnaJ: DnaJ domain                        5..70
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 132..212
   PFAM                 DnaJ_C: DnaJ C terminal region           225..290
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..67
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       132..210
   PRODOM               PD149643: DNAJ(27)                       214..259
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       261..343
   PRODOM               PD154775: DNAJ(2) O52065(1)              346..374
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 145..150
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 198..203
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 333 (117.2 bits), Expect = 3.8e-29, P = 3.8e-29
 Identities = 74/174 (42%), Positives = 101/174 (58%), Frame = +3

Query:    21 EQKFKEISNAYEVLSDDEKRSIYDRFGEAGLK-GSGMGMGDFSNP-F-DLFESLFEGMNR 191
             E+KFKEI  AYEVL+D EKR+ YD++G A  + G+G G G F    F D+F  +F G   
Sbjct:    44 EEKFKEIQEAYEVLNDKEKRAAYDQYGHAAFEQGTGFGGGSFGGADFGDIFGDMF-GDIF 102

Query:   192 GAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPSR 371
             G G RG     + G+D  Y + +  +EAV G  K+I+I  L  C TC+G+GA+ G+    
Sbjct:   103 GGGGRGRQR-VVRGDDLRYDIEITLEEAVKGTTKDIKIHTLAPCDTCHGTGAEAGSKVET 161

Query:   372 CXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKSKRISL 542
             C  C G GR+        G F     C  C+GTG+ I  PC TC GDG + K+K +S+
Sbjct:   162 CPHCHGAGRLRRQQ----GFFVTEQPCHFCHGTGKKIEKPCKTCHGDGRVNKAKNLSV 215


 >gi|3122004|sp|O33529|DNAJ_RHILE  CHAPERONE PROTEIN DNAJ
            >gi|2342643|emb|CAA74983.1| (Y14649) dnaJ [Rhizobium leguminosarum]
            Length = 234

Frame  3 hits (HSPs):           _______________________________________   
Annotated Domains:      __________________________  __________________    
                        __________________________________________________
Database sequence:     |          |          |         |          |       | 234
                       0         50        100       150        200
__________________

Annotated Domains:
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        77..119
   Entrez               Repetitive region: CXXCXGXG MOTIF.       149..156
   Entrez               Repetitive region: CXXCXGXG MOTIF.       166..173
   Entrez               Repetitive region: CXXCXGXG MOTIF.       188..195
   Entrez               Repetitive region: CXXCXGXG MOTIF.       202..209
   PFAM                 DnaJ: DnaJ domain                        5..70
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 136..216
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 329 (115.8 bits), Expect = 1.0e-28, P = 1.0e-28
 Identities = 73/177 (41%), Positives = 102/177 (57%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGD--FSNP-F-DLFESLF-EG 182
             AE+KFKEI+ AYE+L D +KR+ YDR+G A  +  GMG G   F+   F D+FE +F E 
Sbjct:    43 AERKFKEINEAYEMLKDPQKRAAYDRYGHAAFEHGGMGGGGGGFAGGGFSDIFEDIFGEM 102

Query:   183 MNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTT 362
             M  GA  + S  G   G D  Y++ +  +E+  G   +I +    +C  C GSGAKPGT 
Sbjct:   103 MGGGAARQRSSGGRERGADLRYNMEITLEESFSGKTAQIRVPTSITCDVCTGSGAKPGTQ 162

Query:   363 PSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSGDGXLKKSKRIS 539
             P  C TC G GRV ++     G F    TC +C+G G+I   PC  C G G + + + +S
Sbjct:   163 PKNCGTCQGTGRVRAAQ----GFFSIERTCPTCHGRGQIIPDPCPKCHGQGRVTEERSLS 218

Query:   540 L 542
             +
Sbjct:   219 V 219


 >gi|1074176|pir||C64112  heat shock protein dnaJ - Haemophilus influenzae
            (strain Rd KW20) >gi|1574168|gb|AAC22890.1| (U32803) heat shock
            protein (dnaJ) [Haemophilus influenzae Rd]
            Length = 394

Frame  3 hits (HSPs):         _______________________                     
Annotated Domains:       ______________      ____________________________ 
                        __________________________________________________
Database sequence:     |                  |                  |            | 394
                       0                150                300
__________________

Annotated Domains:
   DOMO                 DM00098: NT-DNAJDOMAIN                   10..117
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              172..218
   DOMO                 DM00156: NT-DNAJDOMAIN                   220..296
   DOMO                 DM00156: NT-DNAJDOMAIN                   298..385
   Entrez               domain: dnaJ N-terminal domain homology  17..82
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 212..217
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        59..78
__________________


  Plus Strand HSPs:

 Score = 325 (114.4 bits), Expect = 2.7e-28, P = 2.7e-28
 Identities = 72/175 (41%), Positives = 101/175 (57%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPF------DLFESLFE 179
             AE+KFKEI+ AYEVL DD+KR+ YD++G A  +  G G G F   F      D+F  +F 
Sbjct:    55 AEEKFKEINEAYEVLGDDQKRAAYDQYGHAAFEQGG-GAGGFGGGFGGADFGDMFGDIF- 112

Query:   180 GMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGT 359
             G   G G RG     + GED  Y L ++ +EAV G  K+I+I+ L  C +C GSGA+ G+
Sbjct:   113 GDIFGGGGRGRQR-VVRGEDLRYDLEISLEEAVKGTTKDIQINTLAHCDSCGGSGAEKGS 171

Query:   360 TPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKSKRI 536
                 C  C G GR+        G F     C +C+G+G+ I  PC  C G+G + K + +
Sbjct:   172 KVETCPHCHGSGRIRRQQ----GFFVSESICPTCHGSGKKIEKPCRNCHGEGRVHKKENL 227

Query:   537 SL 542
             S+
Sbjct:   228 SV 229


 >gi|1169371|sp|P43735|DNAJ_HAEIN  CHAPERONE PROTEIN DNAJ
            Length = 382

Frame  3 hits (HSPs):        ________________________                     
Annotated Domains:      _______________  _________________________________
                        __________________________________________________
Database sequence:     |                   |                   |          | 382
                       0                 150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       47..67
   DOMO                 DM00098: NT-DNAJDOMAIN                   1..105
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              160..206
   DOMO                 DM00156: NT-DNAJDOMAIN                   208..284
   DOMO                 DM00156: NT-DNAJDOMAIN                   286..373
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        77..110
   Entrez               Repetitive region: CXXCXGXG MOTIF.       147..154
   Entrez               Repetitive region: CXXCXGXG MOTIF.       164..171
   Entrez               Repetitive region: CXXCXGXG MOTIF.       186..193
   Entrez               Repetitive region: CXXCXGXG MOTIF.       200..207
   PFAM                 DnaJ: DnaJ domain                        5..70
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 134..214
   PFAM                 DnaJ_C: DnaJ C terminal region           227..348
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           16..35
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          47..67
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         139..158
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          164..174
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           178..196
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          198..213
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         217..233
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        263..280
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..67
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       134..212
   PRODOM               PD149643: DNAJ(27)                       216..261
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       263..345
   PRODOM               PD154775: DNAJ(2) O52065(1)              348..378
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 200..205
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 325 (114.4 bits), Expect = 2.7e-28, P = 2.7e-28
 Identities = 72/175 (41%), Positives = 101/175 (57%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPF------DLFESLFE 179
             AE+KFKEI+ AYEVL DD+KR+ YD++G A  +  G G G F   F      D+F  +F 
Sbjct:    43 AEEKFKEINEAYEVLGDDQKRAAYDQYGHAAFEQGG-GAGGFGGGFGGADFGDMFGDIF- 100

Query:   180 GMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGT 359
             G   G G RG     + GED  Y L ++ +EAV G  K+I+I+ L  C +C GSGA+ G+
Sbjct:   101 GDIFGGGGRGRQR-VVRGEDLRYDLEISLEEAVKGTTKDIQINTLAHCDSCGGSGAEKGS 159

Query:   360 TPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLKKSKRI 536
                 C  C G GR+        G F     C +C+G+G+ I  PC  C G+G + K + +
Sbjct:   160 KVETCPHCHGSGRIRRQQ----GFFVSESICPTCHGSGKKIEKPCRNCHGEGRVHKKENL 215

Query:   537 SL 542
             S+
Sbjct:   216 SV 217


 >gi|3122016|sp|Q52702|DNAJ_RHOCA  CHAPERONE PROTEIN DNAJ
            >gi|1373329|gb|AAC45474.1| (U57637) DnaJ protein [Rhodobacter
            capsulatus]
            Length = 384

Frame  3 hits (HSPs):        _________________________                    
Annotated Domains:      ________________  ________________________________
                        __________________________________________________
Database sequence:     |                   |                  |           | 384
                       0                 150                300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       47..67
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        76..119
   Entrez               Repetitive region: CXXCXGXG MOTIF.       156..163
   Entrez               Repetitive region: CXXCXGXG MOTIF.       173..180
   Entrez               Repetitive region: CXXCXGXG MOTIF.       195..202
   Entrez               Repetitive region: CXXCXGXG MOTIF.       209..216
   PFAM                 DnaJ: DnaJ domain                        5..70
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 143..223
   PFAM                 DnaJ_C: DnaJ C terminal region           236..358
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           16..35
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          47..67
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         148..167
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          173..183
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           187..205
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          207..222
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         226..242
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        272..289
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..67
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       143..222
   PRODOM               PD149643: DNAJ(27)                       225..270
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       272..355
   PRODOM               PD171552: DNAJ_RHOCA                     357..383
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 209..214
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
__________________


  Plus Strand HSPs:

 Score = 321 (113.0 bits), Expect = 7.2e-28, P = 7.2e-28
 Identities = 70/187 (37%), Positives = 103/187 (55%), Frame = +3

Query:     9 EPGAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMG----------DFSNPF- 155
             +  AE +FKE++ AY+VL D +K++ YDR+G A  +G GMG G          DFS+ F 
Sbjct:    40 QSAAEAQFKEVNGAYDVLKDGDKKAAYDRYGHAAFEG-GMGGGGPRGPYGQGADFSSAFS 98

Query:   156 DLFESLFEGMNRGAGSRGSWNGAID--GEDEYYSLVLNFKEAVFGIEKEIEISRLESCGT 329
             D+FE LF     G G  G     +   G D  Y++ +  +EA  G +K I +    +CG+
Sbjct:    99 DVFEDLFGDFMGGRGGPGGGGRRVRRRGSDLRYNMRVTLEEAFKGAQKTITVPGSAACGS 158

Query:   330 CNGSGAKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSG 506
             CNG+GA+ G  P  C TC G G+V +      G F    TC +C G G++   PC  C G
Sbjct:   159 CNGTGAEGGAEPQTCPTCSGLGKVRAQN----GFFTVERTCPTCGGQGQVVKNPCRVCHG 214

Query:   507 DGXLKKSKRISL 542
              G ++K + +S+
Sbjct:   215 SGRIEKERTLSV 226


 >gi|9789744|sp|O25890|DNAJ_HELPY  CHAPERONE PROTEIN DNAJ >gi|7441923|pir||D64686
            co-chaperone and heat shock protein - Helicobacter pylori  (strain
            26695) >gi|2314497|gb|AAD08373.1| (AE000634) co-chaperone and heat
            shock protein (dnaJ) [Helicobacter pylori 26695]
            Length = 369

Frame  3 hits (HSPs):        ________________________                     
                        __________________________________________________
Database sequence:     |                    |                   |         | 369
                       0                  150                 300

  Plus Strand HSPs:

 Score = 319 (112.3 bits), Expect = 1.2e-27, P = 1.2e-27
 Identities = 72/173 (41%), Positives = 100/173 (57%), Frame = +3

Query:    18 AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLKGSGMGMGDFSNPFDLFESLFEGMNRGA 197
             AE+KFK I+ AY VLSD++KR++YDR+G+ GL  +G   GDFS+ F+   S FE    G 
Sbjct:    42 AEEKFKLINEAYGVLSDEKKRALYDRYGKKGLNQAGASQGDFSDFFEDLGSFFEDAF-GF 100

Query:   198 GSRGSWNGAIDGEDEYY-SLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPSRC 374
             G+RGS         +Y  +L L+FKEAVFG +K I++     C +C+G+GAK     + C
Sbjct:   101 GARGSKRQKSSIAPDYLQTLELSFKEAVFGCKKTIKVQYQSVCESCDGTGAKDKALET-C 159

Query:   375 XTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGEI-STPCNTCSGDGXLKKSKRI 536
               C GQG+V        G    + TC +C G G+I  TPC  C G   + K + I
Sbjct:   160 KQCNGQGQVFMRQ----GFMSFAQTCGACQGKGKIVKTPCQACKGKTYILKDEEI 210


 >gi|461942|sp|Q03363|DNJ1_ALLPO  DNAJ PROTEIN HOMOLOG 1 (DNAJ-1)
            >gi|479277|pir||S33312 dnaJ protein - leek (fragment)
            >gi|16087|emb|CAA49211.1| (X69436) DNA J protein [Allium porrum]
            >gi|447267|prf||1914140A DnaJ protein [Allium porrum]
            Length = 397

Frame  3 hits (HSPs):      ______________________                         
Annotated Domains:      ___________   _____________________________      _
                        __________________________________________________
Database sequence:     |                  |                  |            | 397
                       0                150                300
__________________

Annotated Domains:
   Entrez               Domain: DNAJ-LIKE.                       1..52
   Entrez               Domain: POLY-GLY.                        62..66
   Entrez               Domain: GLY-RICH.                        60..87
   Entrez               Repetitive region: CXXCXGXG MOTIF.       127..134
   Entrez               Repetitive region: CXXCXGXG MOTIF.       143..150
   Entrez               Repetitive region: CXXCXGXG MOTIF.       170..177
   Entrez               Repetitive region: CXXCXGXG MOTIF.       186..193
   Entrez               lipid-binding site: FARNESYL (BY SIMILAR 394
   PFAM                 DnaJ: DnaJ domain                        1..53
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 114..200
   PFAM                 DnaJ_C: DnaJ C terminal region           213..337
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        30..49
   PROSITE              DNAJ_CXXCXGXG: CXXCXGXG dnaJ domain sign 127..150
__________________


  Plus Strand HSPs:

 Score = 318 (111.9 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 71/175 (40%), Positives = 97/175 (55%), Frame = +3

Query:    15 GAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLK-GSGMGMGDFSNPFDLFESLFEGMNR 191
             G  +KFKE++ AY+VLSD EKR IYD++GE  LK G G G GD  +PFD+F+S F G   
Sbjct:    25 GDPEKFKELAQAYDVLSDPEKREIYDQYGEDALKEGMGGGGGDH-DPFDIFQSFFGGGGF 83

Query:   192 GAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPSR 371
             G G          GED  + L ++ +E   G  K++ +SR   C  CNG G+K G +  R
Sbjct:    84 GGGGSSRGRRQRRGEDVVHPLKVSLEELYNGTSKKLSLSRNVICSKCNGKGSKSGAS-MR 142

Query:   372 CXTCGGQGRVVSSTXTPLGIFQQSM-TCSSCNGTGEISTP---CNTCSGDGXLKKSK 530
             C +C G G  VS      G+ QQ    C+ C GTGE+      C  C G+  +++ K
Sbjct:   143 CASCQGSGMKVSIRQLGPGMIQQMQHPCNDCKGTGEMINDKDRCPLCKGEKVVQEKK 199


 >gi|1169370|sp|P42381|DNAJ_COXBU  CHAPERONE PROTEIN DNAJ >gi|2119733|pir||I40843
            heat shock protein dnaJ - Coxiella burnetii
            >gi|547393|gb|AAA65100.1| (L36455) heat shock protein [Coxiella
            burnetii]
            Length = 367

Frame  3 hits (HSPs):       __________________________                    
Annotated Domains:      __________________________________________________
                        __________________________________________________
Database sequence:     |                    |                   |         | 367
                       0                  150                 300
__________________

Annotated Domains:
   BLOCKS               BL00636A: Nt-dnaJ domain proteins.       20..36
   BLOCKS               BL00636B: Nt-dnaJ domain proteins.       47..67
   DOMO                 DM00098: NT-DNAJDOMAIN                   24..104
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              124..157
   DOMO                 DM00240: CXXCXGXGDNAJDOMAIN              159..204
   DOMO                 DM00156: NT-DNAJDOMAIN                   206..282
   DOMO                 DM00156: NT-DNAJDOMAIN                   284..366
   Entrez               Domain: DNAJ-LIKE.                       3..72
   Entrez               Domain: GLY-RICH.                        79..109
   Entrez               Repetitive region: CXXCXGXG MOTIF.       146..153
   Entrez               Repetitive region: CXXCXGXG MOTIF.       162..169
   Entrez               Repetitive region: CXXCXGXG MOTIF.       184..191
   Entrez               Repetitive region: CXXCXGXG MOTIF.       198..205
   PFAM                 DnaJ: DnaJ domain                        5..70
   PFAM                 DnaJ_CXXCXGXG: DnaJ central domain (4 re 133..212
   PFAM                 DnaJ_C: DnaJ C terminal region           225..346
   PRINTS               DNAJPROTEIN1: DNAJ motif I - 3           16..35
   PRINTS               DNAJPROTEIN2: DNAJ motif II - 3          47..67
   PRINTS               DNAJPROTEIN3: DNAJ motif III - 3         138..157
   PRINTS               DNAJPROTEIN4: DNAJ motif IV - 3          162..172
   PRINTS               DNAJPROTEIN5: DNAJ motif V - 3           176..194
   PRINTS               DNAJPROTEIN6: DNAJ motif VI - 3          196..211
   PRINTS               DNAJPROTEIN7: DNAJ motif VII - 3         215..231
   PRINTS               DNAJPROTEIN8: DNAJ motif VIII - 3        261..278
   PRODOM               PD000231: DNAJ(32) DNJH(4) CSP(3)        1..67
   PRODOM               PD033728: DNAJ(14)                       97..130
   PRODOM               PD000802: DNAJ(28) DNJ2(3) DNJH(3)       133..211
   PRODOM               PD149643: DNAJ(27)                       214..259
   PRODOM               PD000601: DNAJ(34) DNJH(4) DNJ2(3)       261..344
   PRODOM               PD171539: DNAJ_COXBU                     346..366
   PROSITE              CYTOCHROME_C: Cytochrome c family heme-b 198..203
   PROSITE              DNAJ_1: Nt-dnaJ domain signature.        47..66
   PROSITE              DNAJ_CXXCXGXG: CXXCXGXG dnaJ domain sign 146..169
__________________


  Plus Strand HSPs:

 Score = 318 (111.9 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 76/180 (42%), Positives = 103/180 (57%), Frame = +3

Query:     6 REPG---AEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLK----GSGMGMGDFSNPFDLF 164
             R PG   AE KFKE   AYEVL D  KR+ YD+FG AG++    G+G G   F +  D+F
Sbjct:    36 RNPGDKDAEVKFKEAREAYEVLCDSRKRASYDQFGHAGVEQTFGGAGAGGFGFGDLGDIF 95

Query:   165 ESLFEGMNRGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSG 344
               +F  +  GA  RG       G D  Y LVL+ +EAV G+ + I++    +C TCNGSG
Sbjct:    96 GDIFGDIFGGA--RGGQAREQRGADLAYELVLSLEEAVHGLSRTIKVPTWINCKTCNGSG 153

Query:   345 AKPGTTPSRCXTCGGQGRVVSSTXTPLGIFQQSMTCSSCNGTGE-ISTPCNTCSGDGXLK 521
             AK G++P+ C  C G G++        G  Q   TCS C G G+ I  PC  C G G  +
Sbjct:   154 AK-GSSPATCPRCNGSGQMRMQH----GFLQVQQTCSVCRGRGQVIKDPCTDCHGQGRQQ 208

Query:   522 KSKRISL 542
             ++K +S+
Sbjct:   209 QTKTLSV 215


 >gi|7488735|pir||T09338  DnaJ-like protein MsJ1 - alfalfa
            >gi|2370312|emb|CAA04447.1| (AJ000995) DnaJ-like protein [Medicago
            sativa] >gi|3202020|gb|AAC19391.1| (AF069507) DnaJ-like protein
            MsJ1 [Medicago sativa]
            Length = 423

Frame  3 hits (HSPs):        ______________________                       
                        __________________________________________________
Database sequence:     |                 |                 |              | 423
                       0               150               300

  Plus Strand HSPs:

 Score = 318 (111.9 bits), Expect = 1.5e-27, P = 1.5e-27
 Identities = 70/176 (39%), Positives = 95/176 (53%), Frame = +3

Query:    15 GAEQKFKEISNAYEVLSDDEKRSIYDRFGEAGLK-GSGMGMGD-FSNPFDLFESLFEGMN 188
             G  +KFKE+  AYEVLSD EK+ +YD++GE  LK G G G G  F NPFD+FES F G  
Sbjct:    47 GDPEKFKELGQAYEVLSDPEKKELYDQYGEDALKEGMGGGAGSSFHNPFDIFESFF-GAG 105

Query:   189 RGAGSRGSWNGAIDGEDEYYSLVLNFKEAVFGIEKEIEISRLESCGTCNGSGAKPGTTPS 368
              G G          GED  +S+ ++ ++   G  K++ +SR   C  C G G+K GT   
Sbjct:   106 FGGGGPSRARRQKQGEDVVHSIKVSLEDVYNGTTKKLSLSRNALCSKCKGKGSKSGTA-G 164

Query:   369 RCXTCGGQGRVVSSTXTPLGIFQQSM-TCSSCNGTGEISTP---CNTCSGDGXLKKSK 530
             RC  C G G  ++     LG+ QQ    C  C GTGE+ +    C  C G+   ++ K
Sbjct:   165 RCFGCQGTGMKITRRQIGLGMIQQMQHVCPDCKGTGEVISERDRCPQCKGNKITQEKK 222


WARNING:  HSPs involving 313 database sequences were not reported due to the
          limiting value of parameter B = 50.


Parameters:
  filter=none
  matrix=BLOSUM62
  V=50
  B=50
  E=10
  gi
  H=1
  sort_by_pvalue
  echofilter

  ctxfactor=5.96

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   Std.    0   BLOSUM62                                 0.318   0.135   0.401  
   +3      0   BLOSUM62        0.314   0.135   0.404    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +2      0   BLOSUM62        0.318   0.135   0.401    0.369   0.164   0.745  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   +1      0   BLOSUM62        0.318   0.135   0.401    0.360   0.159   0.538  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -1      0   BLOSUM62        0.318   0.135   0.401    0.322   0.139   0.428  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -2      0   BLOSUM62        0.318   0.135   0.401    0.348   0.151   0.547  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a
   -3      0   BLOSUM62        0.318   0.135   0.401    0.363   0.158   0.611  
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E    S W   T  X   E2     S2
   +3      0      180       177       10.  76 3  12 23  0.094   35
                                                    31  0.11    37
   +2      0      181       179       10.  76 3  12 22  0.11    34
                                                    31  0.12    37
   +1      0      181       178       10.  76 3  12 22  0.11    34
                                                    31  0.11    37
   -1      0      181       178       10.  76 3  12 22  0.11    34
                                                    31  0.11    37
   -2      0      181       178       10.  76 3  12 22  0.11    34
                                                    31  0.11    37
   -3      0      180       177       10.  76 3  12 22  0.11    34
                                                    31  0.11    37


Statistics:

  Database:  /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
    Title:  nr
    Release date:  unknown
    Posted date:  4:06 PM CST Feb 28, 2001
    Format:  BLAST
  # of letters in database:  197,782,623
  # of sequences in database:  625,274
  # of database sequences satisfying E:  363
  No. of states in DFA:  597 (59 KB)
  Total size of DFA:  222 KB (256 KB)
  Time to generate neighborhood:  0.00u 0.01s 0.01t  Elapsed: 00:00:00
  No. of threads or processors used:  6
  Search cpu time:  194.47u 1.19s 195.66t  Elapsed: 00:00:34
  Total cpu time:  194.54u 1.24s 195.78t  Elapsed: 00:00:34
  Start:  Mon Oct  1 19:11:30 2001   End:  Mon Oct  1 19:12:04 2001

WARNINGS ISSUED:  2


Annotated Domains Database:   March 14, 2000 

Release Date:  March 14, 2000