R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|4582468|gb|AAD24852.1|AC007071_24 (AC007071) 40S ribosomal protein;
contains C-terminal domain [Arabidopsis thaliana]
Length = 250
Frame 2 hits (HSPs): ___________________
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 250
0 50 100 150 200
Plus Strand HSPs:
Score = 539 (189.7 bits), Expect = 5.7e-51, P = 5.7e-51
Identities = 117/160 (73%), Positives = 127/160 (79%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
MATQ+SK RKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQ VLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLW 399
EKGRRIRELTS+VQK FKFP +SVELYAEKVNNRGLCAI QAESLRY L G L
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLL------GGLA 114
Query: 400 CFEVCYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKFKDGY++ S
Sbjct: 115 VRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSS 160
Score = 93 (32.7 bits), Expect = 0.14, P = 0.13
Identities = 29/87 (33%), Positives = 43/87 (49%), Frame = +2
Query: 230 GESGN----LPRWFRRXSSFPX-TVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXAC 394
GE G L ++ FP +V + K + G+ A+ SL V AC
Sbjct: 60 GEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
Query: 395 YGVLKFVMENGAXGSKSLLIGKLKPXK 475
YGVL+FVME+GA G + ++ GKL+ +
Sbjct: 120 YGVLRFVMESGAKGCEVIVSGKLRAAR 146
>gi|11275277|pir||T45927 ribosomal protein S3a homolog - Arabidopsis thaliana
>gi|7630007|emb|CAB88349.1| (AL132960) ribosomal protein S3a
homolog [Arabidopsis thaliana]
Length = 249
Frame 2 hits (HSPs): ___________________
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 249
0 50 100 150 200
Plus Strand HSPs:
Score = 535 (188.3 bits), Expect = 1.5e-50, P = 1.5e-50
Identities = 116/160 (72%), Positives = 126/160 (78%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
M TQ+SK RKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQ VLG
Sbjct: 1 MTTQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLW 399
EKGRRIRELTS+VQK FKFP +SVELYAEKVNNRGLCAI QAESLRY L G L
Sbjct: 61 EKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLL------GGLA 114
Query: 400 CFEVCYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKFKDGY++ S
Sbjct: 115 VRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSS 160
Score = 93 (32.7 bits), Expect = 0.14, P = 0.13
Identities = 29/87 (33%), Positives = 43/87 (49%), Frame = +2
Query: 230 GESGN----LPRWFRRXSSFPX-TVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXAC 394
GE G L ++ FP +V + K + G+ A+ SL V AC
Sbjct: 60 GEKGRRIRELTSLVQKRFKFPVDSVELYAEKVNNRGLCAIAQAESLRYKLLGGLAVRRAC 119
Query: 395 YGVLKFVMENGAXGSKSLLIGKLKPXK 475
YGVL+FVME+GA G + ++ GKL+ +
Sbjct: 120 YGVLRFVMESGAKGCEVIVSGKLRAAR 146
>gi|9758155|dbj|BAB08712.1| (AB015477) 40S ribosomal protein S3 [Arabidopsis
thaliana]
Length = 248
Frame 2 hits (HSPs): ___________________
Frame 1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 248
0 50 100 150 200
Plus Strand HSPs:
Score = 531 (186.9 bits), Expect = 4.0e-50, P = 4.0e-50
Identities = 116/160 (72%), Positives = 126/160 (78%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
MATQ+SK RKFVADGVF+AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQ VLG
Sbjct: 1 MATQISKKRKFVADGVFYAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQNVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLW 399
EKGRRIRELTS+VQK FKFP +SVELYAEKV NRGLCAI QAESLRY L G L
Sbjct: 61 EKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLL------GGLA 114
Query: 400 CFEVCYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKFKDGY++ S
Sbjct: 115 VRRACYGVLRFVMESGAKGCEVIVSGKLRAARAKSMKFKDGYMVSS 160
Score = 93 (32.7 bits), Expect = 0.14, P = 0.13
Identities = 29/87 (33%), Positives = 43/87 (49%), Frame = +2
Query: 230 GESGN----LPRWFRRXSSFPX-TVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXAC 394
GE G L ++ FP +V + K + G+ A+ SL V AC
Sbjct: 60 GEKGRRIRELTSLVQKRFKFPQDSVELYAEKVANRGLCAIAQAESLRYKLLGGLAVRRAC 119
Query: 395 YGVLKFVMENGAXGSKSLLIGKLKPXK 475
YGVL+FVME+GA G + ++ GKL+ +
Sbjct: 120 YGVLRFVMESGAKGCEVIVSGKLRAAR 146
>gi|6755372 ref|NP_036182.1| ribosomal protein S3 [Mus musculus]
>gi|1173253|sp|P17073|RS3_MOUSE 40S RIBOSOMAL PROTEIN S3
>gi|543317|pir||S41170 ribosomal protein S3, cytosolic - mouse
>gi|57728|emb|CAA35916.1| (X51536) ribosomal protein S3 (AA 1-243)
[Rattus rattus] >gi|439522|emb|CAA54167.1| (X76772) ribosomal
protein S3 [Mus musculus]
Length = 243
Frame 2 hits (HSPs): ______________
Frame 1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
Plus Strand HSPs:
Score = 469 (165.1 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 108/160 (67%), Positives = 116/160 (72%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
MA Q+SK RKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQ VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLW 399
EKGRRIRELT+VVQK F FP SVELYAEKV RGLCAI QAESLRY L G L
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLL------GGLA 114
Query: 400 CFEVCYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKF DG +I S
Sbjct: 115 VRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 160
Score = 94 (33.1 bits), Expect = 0.099, P = 0.094
Identities = 25/65 (38%), Positives = 37/65 (56%), Frame = +2
Query: 275 FPX-TVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLL 451
FP +V + K +T G+ A+ SL V ACYGVL+F+ME+GA G + ++
Sbjct: 79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVV 138
Query: 452 IGKLK 466
GKL+
Sbjct: 139 SGKLR 143
>gi|133940|sp|P02350|RS3A_XENLA 40S RIBOSOMAL PROTEIN S3A (S1A)
>gi|70851|pir||R3XL3A ribosomal protein S3a - African clawed frog
>gi|65091|emb|CAA40592.1| (X57322) ribosomal protein S1a [Xenopus
laevis]
Length = 246
Frame 2 hits (HSPs): ______________
Frame 1 hits (HSPs): _________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL00548: Ribosomal protein S3 proteins. 66..95
DOMO DM00298: RIBOSOMALPROTEINS3 27..190
PFAM KH-domain: KH domain 47..95
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 104..188
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 4..68
PRODOM PD150147: RS3(13) 70..215
PRODOM PD037257: RS3A(1) RS3B(1) 217..245
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 147..183
__________________
Plus Strand HSPs:
Score = 469 (165.1 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 108/160 (67%), Positives = 116/160 (72%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
MA Q+SK RKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQ VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLW 399
EKGRRIRELT+VVQK F FP SVELYAEKV RGLCAI QAESLRY L G L
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLL------GGLA 114
Query: 400 CFEVCYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKF DG +I S
Sbjct: 115 VRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 160
Score = 94 (33.1 bits), Expect = 0.10, P = 0.096
Identities = 25/65 (38%), Positives = 37/65 (56%), Frame = +2
Query: 275 FPX-TVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLL 451
FP +V + K +T G+ A+ SL V ACYGVL+F+ME+GA G + ++
Sbjct: 79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVV 138
Query: 452 IGKLK 466
GKL+
Sbjct: 139 SGKLR 143
>gi|70850|pir||R3RT3 ribosomal protein S3, cytosolic [validated] - rat
Length = 243
Frame 2 hits (HSPs): ______________
Frame 1 hits (HSPs): _________________________________
Annotated Domains: ________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
__________________
Annotated Domains:
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 147..183
__________________
Plus Strand HSPs:
Score = 469 (165.1 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 108/160 (67%), Positives = 116/160 (72%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
MA Q+SK RKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQ VLG
Sbjct: 1 MAVQISKNRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLW 399
EKGRRIRELT+VVQK F FP SVELYAEKV RGLCAI QAESLRY L G L
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLL------GGLA 114
Query: 400 CFEVCYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKF DG +I S
Sbjct: 115 VRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 160
Score = 94 (33.1 bits), Expect = 0.099, P = 0.094
Identities = 25/65 (38%), Positives = 37/65 (56%), Frame = +2
Query: 275 FPX-TVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLL 451
FP +V + K +T G+ A+ SL V ACYGVL+F+ME+GA G + ++
Sbjct: 79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVV 138
Query: 452 IGKLK 466
GKL+
Sbjct: 139 SGKLR 143
>gi|11437285 ref|XP_006219.1| ribosomal protein S3 [Homo sapiens]
>gi|417719|sp|P23396|RS3_HUMAN 40S RIBOSOMAL PROTEIN S3
>gi|2144763|pir||R3HUS3 ribosomal protein S3, cytosolic - human
>gi|555941|gb|AAB60336.1| (U14990) ribosomal protein S3 [Homo
sapiens] >gi|555943|gb|AAB60337.1| (U14991) ribosomal protein S3
[Homo sapiens] >gi|555945|gb|AAB60338.1| (U14992) ribosomal protein
S3 [Homo sapiens]
Length = 243
Frame 2 hits (HSPs): ______________
Frame 1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
Plus Strand HSPs:
Score = 469 (165.1 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 108/160 (67%), Positives = 116/160 (72%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
MA Q+SK RKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQ VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLW 399
EKGRRIRELT+VVQK F FP SVELYAEKV RGLCAI QAESLRY L G L
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLL------GGLA 114
Query: 400 CFEVCYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKF DG +I S
Sbjct: 115 VRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 160
Score = 94 (33.1 bits), Expect = 0.099, P = 0.094
Identities = 25/65 (38%), Positives = 37/65 (56%), Frame = +2
Query: 275 FPX-TVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLL 451
FP +V + K +T G+ A+ SL V ACYGVL+F+ME+GA G + ++
Sbjct: 79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVV 138
Query: 452 IGKLK 466
GKL+
Sbjct: 139 SGKLR 143
>gi|1350988|sp|P47835|RS3B_XENLA 40S RIBOSOMAL PROTEIN S3B (S1B)
>gi|2119058|pir||I51635 ribosomal protein S1 - African clawed frog
>gi|587600|emb|CAA84291.1| (Z34530) ribosomal protein S1 [Xenopus
laevis] >gi|587602|emb|CAA84290.1| (Z34529) ribosomal protein
[Xenopus laevis]
Length = 246
Frame 2 hits (HSPs): ______________
Frame 1 hits (HSPs): _________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
__________________
Annotated Domains:
BLOCKS BL00548: Ribosomal protein S3 proteins. 66..95
PFAM KH-domain: KH domain 47..95
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 104..188
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 3..68
PRODOM PD150147: RS3(13) 70..215
PRODOM PD037257: RS3A(1) RS3B(1) 217..245
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 147..183
__________________
Plus Strand HSPs:
Score = 469 (165.1 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 108/160 (67%), Positives = 116/160 (72%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
MA QMSK RKFVADG+F AELNE LTRELAEDGYSGVEVRVTP +TEIII ATRTQ VLG
Sbjct: 1 MAAQMSKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTQTEIIILATRTQNVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLW 399
EKGRRIRELT+VVQK F FP SVELYAEKV RGLCAI QAESLRY L G L
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLL------GGLA 114
Query: 400 CFEVCYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKF DG +I S
Sbjct: 115 VRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 160
Score = 94 (33.1 bits), Expect = 0.10, P = 0.096
Identities = 25/65 (38%), Positives = 37/65 (56%), Frame = +2
Query: 275 FPX-TVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLL 451
FP +V + K +T G+ A+ SL V ACYGVL+F+ME+GA G + ++
Sbjct: 79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVV 138
Query: 452 IGKLK 466
GKL+
Sbjct: 139 SGKLR 143
>gi|7765076|gb|AAB19349.2| (S42658) S3 ribosomal protein [Homo sapiens]
Length = 243
Frame 2 hits (HSPs): ______________
Frame 1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
Plus Strand HSPs:
Score = 469 (165.1 bits), Expect = 1.5e-43, P = 1.5e-43
Identities = 108/160 (67%), Positives = 116/160 (72%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
MA Q+SK RKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQ VLG
Sbjct: 1 MAVQISKRRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLW 399
EKGRRIRELT+VVQK F FP SVELYAEKV RGLCAI QAESLRY L G L
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLL------GGLA 114
Query: 400 CFEVCYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKF DG +I S
Sbjct: 115 VRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 160
Score = 94 (33.1 bits), Expect = 0.099, P = 0.094
Identities = 25/65 (38%), Positives = 37/65 (56%), Frame = +2
Query: 275 FPX-TVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLL 451
FP +V + K +T G+ A+ SL V ACYGVL+F+ME+GA G + ++
Sbjct: 79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVV 138
Query: 452 IGKLK 466
GKL+
Sbjct: 139 SGKLR 143
>gi|2500399|sp|P79891|RS3_AMBME 40S RIBOSOMAL PROTEIN S3
>gi|1836060|gb|AAB46849.1| (S83098) ribosomal protein S3 [Ambystoma
mexicanum=Mexican axolotls, embryos, Peptide, 253 aa]
Length = 253
Frame 2 hits (HSPs): ______________
Frame 1 hits (HSPs): ________________________________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | | || 253
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM KH-domain: KH domain 47..95
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 104..188
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 4..68
PRODOM PD150147: RS3(13) 70..215
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 147..183
__________________
Plus Strand HSPs:
Score = 468 (164.7 bits), Expect = 1.9e-43, P = 1.9e-43
Identities = 108/160 (67%), Positives = 116/160 (72%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
MA Q+SK RKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQ VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLW 399
EKGRRIRELT+VVQK F FP SVELYAEKV RGLCAI QAESLRY L G L
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLL------GGLA 114
Query: 400 CFEVCYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKF DG +I S
Sbjct: 115 VRRACYGVLRFIMESGSKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 160
Score = 91 (32.0 bits), Expect = 0.26, P = 0.23
Identities = 24/65 (36%), Positives = 37/65 (56%), Frame = +2
Query: 275 FPX-TVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLL 451
FP +V + K +T G+ A+ SL V ACYGVL+F+ME+G+ G + ++
Sbjct: 79 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGSKGCEVVV 138
Query: 452 IGKLK 466
GKL+
Sbjct: 139 SGKLR 143
>gi|4506721 ref|NP_000996.1| ribosomal protein S3 [Homo sapiens]
>gi|32532|emb|CAA39248.1| (X55715) ribosomal protein s3 [Homo
sapiens]
Length = 243
Frame 2 hits (HSPs): ______________
Frame 1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
Plus Strand HSPs:
Score = 464 (163.3 bits), Expect = 5.1e-43, P = 5.1e-43
Identities = 107/160 (66%), Positives = 115/160 (71%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
MA Q+SK RKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQ VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLW 399
EKGRRIRELT+VVQK F FP SVELYAEKV RGLCAI QAE LRY L G L
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAECLRYKLL------GGLA 114
Query: 400 CFEVCYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKF DG +I S
Sbjct: 115 VRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 160
Score = 89 (31.3 bits), Expect = 0.43, P = 0.35
Identities = 24/65 (36%), Positives = 36/65 (55%), Frame = +2
Query: 275 FPX-TVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLL 451
FP +V + K +T G+ A+ L V ACYGVL+F+ME+GA G + ++
Sbjct: 79 FPEGSVELYAEKVATRGLCAIAQAECLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVV 138
Query: 452 IGKLK 466
GKL+
Sbjct: 139 SGKLR 143
>gi|6094179|sp|O60128|RS3_SCHPO 40S RIBOSOMAL PROTEIN S3
>gi|7489988|pir||T39606 40s ribosomal protein s3 - fission yeast
(Schizosaccharomyces pombe) >gi|3133108|emb|CAA19033.1| (AL023554)
40s ribosomal protein s3. [Schizosaccharomyces pombe]
Length = 249
Frame 1 hits (HSPs): _________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 249
0 50 100 150 200
__________________
Annotated Domains:
PFAM KH-domain: KH domain 49..97
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 106..190
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 7..70
PRODOM PD150147: RS3(13) 72..219
PRODOM PD110355: RS3_SCHPO 221..248
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 149..185
__________________
Plus Strand HSPs:
Score = 453 (159.5 bits), Expect = 7.4e-42, P = 7.4e-42
Identities = 98/159 (61%), Positives = 116/159 (72%), Frame = +1
Query: 43 ATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGE 222
A +SK RKFVADGVF+AELNE TREL+E+GYSG EVRVTP R+EIIIRAT TQ VLGE
Sbjct: 4 AFTISKKRKFVADGVFYAELNEFFTRELSEEGYSGCEVRVTPSRSEIIIRATHTQDVLGE 63
Query: 223 KGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSL----VAYCSXG 390
KGRRIRELT++VQK FKF N+VELYAEKV NRGLCA+ Q ESLRY L V + G
Sbjct: 64 KGRRIRELTALVQKRFKFAENTVELYAEKVQNRGLCAVAQCESLRYKLLAGLAVRRAAYG 123
Query: 391 LLWCFEVCYGKWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
+L K C +V++ K+ + SMKF DG++I S
Sbjct: 124 VLRYVMEAGAKGC---EVVISGKLRAARAKSMKFADGFMIHS 162
>gi|1350990|sp|P48153|RS3_MANSE 40S RIBOSOMAL PROTEIN S3
>gi|527680|gb|AAB05575.1| (U12708) ribosomal protein S3 [Manduca
sexta]
Length = 243
Frame 2 hits (HSPs): ____________
Frame 1 hits (HSPs): ________________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | 243
0 50 100 150 200
__________________
Annotated Domains:
PFAM KH-domain: KH domain 48..96
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 105..189
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 3..69
PRODOM PD150147: RS3(13) 71..216
PRODOM PD110352: RS3_MANSE 218..242
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 148..184
__________________
Plus Strand HSPs:
Score = 449 (158.1 bits), Expect = 2.0e-41, P = 2.0e-41
Identities = 103/156 (66%), Positives = 112/156 (71%), Frame = +1
Query: 52 MSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGR 231
+SK RKFV DGVF AELNE LTRELAEDGYSGVEVRVTP R+EIII ATRTQ+VLGEKGR
Sbjct: 6 ISKKRKFVGDGVFKAELNEFLTRELAEDGYSGVEVRVTPTRSEIIIMATRTQSVLGEKGR 65
Query: 232 RIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLWCFEV 411
RIRELTSVVQK F P SVELYAEKV RGLCAI QAESLRY + G L
Sbjct: 66 RIRELTSVVQKRFNIPEQSVELYAEKVATRGLCAIAQAESLRYKLI------GGLAVRRA 119
Query: 412 CYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKF DG +I S
Sbjct: 120 CYGVLRFIMESGARGCEVVVSGKLRGQRAKSMKFVDGLMIHS 161
Score = 93 (32.7 bits), Expect = 0.13, P = 0.12
Identities = 22/54 (40%), Positives = 32/54 (59%), Frame = +2
Query: 305 KRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLLIGKLK 466
K +T G+ A+ SL V ACYGVL+F+ME+GA G + ++ GKL+
Sbjct: 91 KVATRGLCAIAQAESLRYKLIGGLAVRRACYGVLRFIMESGARGCEVVVSGKLR 144
>gi|548856|sp|Q06559|RS3_DROME 40S RIBOSOMAL PROTEIN S3 >gi|422496|pir||S35620
ribosomal protein S3.e, cytosolic - fruit fly (Drosophila
melanogaster) >gi|290275|gb|AAA28875.1| (L13690) ribosomal protein
S3/AP endonuclease DNA repair protein [Drosophila melanogaster]
>gi|7300992|gb|AAF56129.1| (AE003743) RpS3 gene product [Drosophila
melanogaster]
Length = 246
Frame 2 hits (HSPs): ___________
Frame 1 hits (HSPs): ________________________________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00298: RIBOSOMALPROTEINS3 29..192
PFAM KH-domain: KH domain 49..97
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 106..190
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 7..70
PRODOM PD150147: RS3(13) 72..226
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 149..185
__________________
Plus Strand HSPs:
Score = 431 (151.7 bits), Expect = 1.6e-39, P = 1.6e-39
Identities = 98/156 (62%), Positives = 110/156 (70%), Frame = +1
Query: 52 MSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGR 231
+SK RKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII AT+TQ VLGEKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPSRTEIIIMATKTQQVLGEKGR 66
Query: 232 RIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLWCFEV 411
RIRELT++VQK F F +ELYAEKV RGLCAI QAESLRY G L
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKL------TGGLAVRRA 120
Query: 412 CYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKF DG +I S
Sbjct: 121 CYGVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 162
Score = 87 (30.6 bits), Expect = 0.78, P = 0.54
Identities = 19/49 (38%), Positives = 29/49 (59%), Frame = +2
Query: 320 GVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLLIGKLK 466
G+ A+ SL V ACYGVL+++ME+GA G + ++ GKL+
Sbjct: 97 GLCAIAQAESLRYKLTGGLAVRRACYGVLRYIMESGAKGCEVVVSGKLR 145
>gi|422495|pir||S32728 ribosomal protein S3 - fruit fly (Drosophila
melanogaster) >gi|296094|emb|CAA51425.1| (X72921) ribosomal protein
S3 [Drosophila melanogaster]
Length = 246
Frame 2 hits (HSPs): ___________
Frame 1 hits (HSPs): ________________________________
Annotated Domains: ________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
__________________
Annotated Domains:
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 149..185
__________________
Plus Strand HSPs:
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 96/156 (61%), Positives = 108/156 (69%), Frame = +1
Query: 52 MSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGR 231
+SK RKFV+DG+F AELNE LTRELAEDGYSGVEVRVTP TEIII AT+TQ VL EKGR
Sbjct: 7 ISKKRKFVSDGIFKAELNEFLTRELAEDGYSGVEVRVTPFGTEIIIMATKTQQVLAEKGR 66
Query: 232 RIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLWCFEV 411
RIRELT++VQK F F +ELYAEKV RGLCAI QAESLRY G L
Sbjct: 67 RIRELTAMVQKRFNFETGRIELYAEKVAARGLCAIAQAESLRYKL------TGELAVRRA 120
Query: 412 CYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G +V+V K+ + SMKF DG +I S
Sbjct: 121 CYGVLRYIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 162
Score = 86 (30.3 bits), Expect = 1.0, P = 0.64
Identities = 19/49 (38%), Positives = 29/49 (59%), Frame = +2
Query: 320 GVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLLIGKLK 466
G+ A+ SL V ACYGVL+++ME+GA G + ++ GKL+
Sbjct: 97 GLCAIAQAESLRYKLTGELAVRRACYGVLRYIMESGAKGCEVVVSGKLR 145
>gi|6324151 ref|NP_014221.1| Ribosomal protein S3 (rp13) (YS3); Rps3p
[Saccharomyces cerevisiae] >gi|1173255|sp|P05750|RS3_YEAST 40S
RIBOSOMAL PROTEIN S3 (YS3) (RP13) >gi|626906|pir||S48510 ribosomal
protein S3.e, cytosolic - yeast (Saccharomyces cerevisiae)
>gi|457164|dbj|BAA04973.1| (D25285) ribosomal protein YS3
[Saccharomyces cerevisiae] >gi|1302158|emb|CAA96070.1| (Z71454) ORF
YNL178w [Saccharomyces cerevisiae] >gi|1463121|gb|AAC49380.1|
(U34347) ribosomal protein S3 [Saccharomyces cerevisiae]
Length = 240
Frame 2 hits (HSPs): ________________
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | | 240
0 50 100 150 200
Plus Strand HSPs:
Score = 404 (142.2 bits), Expect = 1.2e-36, P = 1.2e-36
Identities = 88/160 (55%), Positives = 113/160 (70%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
M +SK RK VADGVF+AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ VLG
Sbjct: 1 MVALISKKRKLVADGVFYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRY---NSL-VAYCSX 387
E GRRI ELT +VQK FK+ ++ LYAE+V +RGL A+ QAES+++ N L + +
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 388 GLLWCFEVCYGKWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
G++ K C +V+V K+ + +MKF DG+LI S
Sbjct: 121 GVVRYVMESGAKGC---EVVVSGKLRAARAKAMKFADGFLIHS 160
Score = 78 (27.5 bits), Expect = 9.3, P = 1.0
Identities = 19/72 (26%), Positives = 37/72 (51%), Frame = +2
Query: 260 RRXSSFPXTVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGS 439
+R P T++ + + G+ A+ S+ + A YGV+++VME+GA G
Sbjct: 75 KRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGC 134
Query: 440 KSLLIGKLKPXK 475
+ ++ GKL+ +
Sbjct: 135 EVVVSGKLRAAR 146
>gi|1350989|sp|P48152|RS3_CAEEL PROBABLE 40S RIBOSOMAL PROTEIN S3
>gi|7440100|pir||T15579 hypothetical protein C23G10.3 -
Caenorhabditis elegans >gi|9802859|gb|AAF99870.1| (U39851) Contains
similarity to Pfam domain: PF00189 (S3_C), Score=99.7,
E-value=4.7e-31, N=1 [Caenorhabditis elegans]
Length = 247
Frame 2 hits (HSPs): ____________
Frame 1 hits (HSPs): ________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 247
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00298: RIBOSOMALPROTEINS3 29..192
PFAM KH-domain: KH domain 49..97
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 106..190
PRODOM PD149954: RS3(8) P90526(1) RS3A(1) 7..70
PRODOM PD150147: RS3(13) 72..222
PRODOM PD110348: RS3_CAEEL 224..246
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 149..185
__________________
Plus Strand HSPs:
Score = 398 (140.1 bits), Expect = 5.0e-36, P = 5.0e-36
Identities = 91/156 (58%), Positives = 108/156 (69%), Frame = +1
Query: 52 MSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGR 231
++K +K V G+F AELN L +ELAEDGYSGVEVR TP R E+II ATRTQ VLGE+GR
Sbjct: 7 VTKKKKAVIGGIFKAELNNFLMKELAEDGYSGVEVRSTPARAEVIIMATRTQNVLGERGR 66
Query: 232 RIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLWCFEV 411
RI+ELTSVVQK F F SVELYAEKV+NRGLCA+ Q ESLRY LV G L
Sbjct: 67 RIKELTSVVQKRFGFEEGSVELYAEKVSNRGLCAVAQCESLRYK-LV-----GGLAVRRA 120
Query: 412 CYG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
CYG G++V+V K+ + +MKF DG +I S
Sbjct: 121 CYGVLRFIMESGAQGVEVIVSGKLRGQRAKAMKFVDGLMIHS 162
Score = 89 (31.3 bits), Expect = 0.44, P = 0.36
Identities = 22/54 (40%), Positives = 31/54 (57%), Frame = +2
Query: 305 KRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLLIGKLK 466
K S G+ A+ SL V ACYGVL+F+ME+GA G + ++ GKL+
Sbjct: 92 KVSNRGLCAVAQCESLRYKLVGGLAVRRACYGVLRFIMESGAQGVEVIVSGKLR 145
>gi|468426|gb|AAA35010.1| (L31405) ribosomal protein S3 [Saccharomyces
cerevisiae]
Length = 240
Frame 2 hits (HSPs): ________________
Frame 1 hits (HSPs): __________________________________
__________________________________________________
Database sequence: | | | | | | 240
0 50 100 150 200
Plus Strand HSPs:
Score = 395 (139.0 bits), Expect = 1.0e-35, P = 1.0e-35
Identities = 87/160 (54%), Positives = 112/160 (70%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
M +SK RK VADGV +AELNE TRELAE+GYSGVEVRVTP +TE+IIRATRTQ VLG
Sbjct: 1 MVALISKKRKLVADGVNYAELNEFFTRELAEEGYSGVEVRVTPTKTEVIIRATRTQDVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRY---NSL-VAYCSX 387
E GRRI ELT +VQK FK+ ++ LYAE+V +RGL A+ QAES+++ N L + +
Sbjct: 61 ENGRRINELTLLVQKRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAY 120
Query: 388 GLLWCFEVCYGKWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
G++ K C +V+V K+ + +MKF DG+LI S
Sbjct: 121 GVVRYVMESGAKGC---EVVVSGKLRAARAKAMKFADGFLIHS 160
Score = 78 (27.5 bits), Expect = 9.3, P = 1.0
Identities = 19/72 (26%), Positives = 37/72 (51%), Frame = +2
Query: 260 RRXSSFPXTVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGS 439
+R P T++ + + G+ A+ S+ + A YGV+++VME+GA G
Sbjct: 75 KRFKYAPGTIVLYAERVQDRGLSAVAQAESMKFKLLNGLAIRRAAYGVVRYVMESGAKGC 134
Query: 440 KSLLIGKLKPXK 475
+ ++ GKL+ +
Sbjct: 135 EVVVSGKLRAAR 146
>gi|1688320|gb|AAB36959.1| (U78756) RpgG [Dictyostelium discoideum]
Length = 218
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | 218
0 50 100 150 200
Plus Strand HSPs:
Score = 378 (133.1 bits), Expect = 6.6e-34, P = 6.6e-34
Identities = 82/158 (51%), Positives = 108/158 (68%), Frame = +1
Query: 49 QMSKXRKFVADGVFFAELNEVLTRELAED-GYSGVEVRVTPMRTEIIIRATRTQAVLGEK 225
Q+SK RKFVADGVF AELNE+ TRE +D GYSGVE++ +P TEIIIRA++TQAV+G
Sbjct: 6 QISKKRKFVADGVFHAELNELFTREFNKDEGYSGVELKTSPGLTEIIIRASKTQAVVGPN 65
Query: 226 GRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLWCF 405
RRI+EL S+VQK F F +V L+AEK+ NRGLCA+ QAESL+ L C+
Sbjct: 66 ARRIQELCSLVQKRFNFKEGTVVLFAEKILNRGLCAVAQAESLKLKLLAGLPVRKA--CY 123
Query: 406 EVCYG---KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
+ + + G +V+V K+ + SMKF+DGY+I S
Sbjct: 124 AIVHQIMTRGAKGCEVIVSGKLRAQRAKSMKFRDGYMIKS 163
>gi|347527|gb|AAA18095.1| (L16016) ribosomal protein S3 [Homo sapiens]
Length = 95
Frame 1 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | | | | | 95
0 20 40 60 80
Plus Strand HSPs:
Score = 377 (132.7 bits), Expect = 8.4e-34, P = 8.4e-34
Identities = 79/95 (83%), Positives = 82/95 (86%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
MA Q+SK RKFVADG+F AELNE LTRELAEDGYSGVEVRVTP RTEIII ATRTQ VLG
Sbjct: 1 MAVQISKKRKFVADGIFKAELNEFLTRELAEDGYSGVEVRVTPTRTEIIILATRTQNVLG 60
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRG 324
EKGRRIRELT+VVQK F FP SVELYAEKV RG
Sbjct: 61 EKGRRIRELTAVVQKRFGFPEGSVELYAEKVATRG 95
>gi|6540574|gb|AAF16402.1| (AF207603) ribosomal protein RPS3 [Musca domestica]
Length = 165
Frame 2 hits (HSPs): ______________________
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | | 165
0 50 100 150
Plus Strand HSPs:
Score = 305 (107.4 bits), Expect = 3.6e-26, P = 3.6e-26
Identities = 73/125 (58%), Positives = 82/125 (65%), Frame = +1
Query: 145 GVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRG 324
GVEVRVTP RTEIII AT+TQ VLGEKGRRIRELT++VQK F F +ELYAEKV RG
Sbjct: 3 GVEVRVTPARTEIIIMATKTQQVLGEKGRRIRELTAMVQKRFSFEPGRIELYAEKVATRG 62
Query: 325 LCAIXQAESLRYNSLVAYCSXGLLWCFEVCYG-------KWCXGIQVLVDWKIETPKTXS 483
LCAI QAESLRY G L CYG G +V+V K+ + S
Sbjct: 63 LCAIAQAESLRYKL------TGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLRGQRAKS 116
Query: 484 MKFKDGYLIXS 516
MKF DG +I S
Sbjct: 117 MKFVDGLMIHS 127
Score = 101 (35.6 bits), Expect = 0.0032, P = 0.0032
Identities = 25/69 (36%), Positives = 38/69 (55%), Frame = +2
Query: 260 RRXSSFPXTVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGS 439
+R S P + + K +T G+ A+ SL V ACYGVL+F+ME+GA G
Sbjct: 42 KRFSFEPGRIELYAEKVATRGLCAIAQAESLRYKLTGGLAVRRACYGVLRFIMESGAKGC 101
Query: 440 KSLLIGKLK 466
+ ++ GKL+
Sbjct: 102 EVVVSGKLR 110
>gi|9967236|dbj|BAB12320.1| (AB047899) hypothetical protein [Macaca
fascicularis]
Length = 83
Frame 1 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | | 83
0 20 40 60 80
Plus Strand HSPs:
Score = 216 (76.0 bits), Expect = 9.6e-17, P = 9.6e-17
Identities = 49/82 (59%), Positives = 56/82 (68%), Frame = +1
Query: 181 IIIRATRTQAVLGEKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRY 360
+II ATRT+ +LGEKGR IRELT+VVQK F FP SVELYA+KV RG I QAESLRY
Sbjct: 1 MIILATRTENILGEKGRWIRELTAVVQKTFGFPEGSVELYADKVATRGR-DIAQAESLRY 59
Query: 361 NSLVAYC-SXGLLWCFEVCYGKW 426
L LWC V +G+W
Sbjct: 60 KFLGGLAVRRAWLWCVAVHHGEW 82
>gi|3642663|gb|AAC36521.1| (U89414) ribosomal protein S3 [Mus musculus]
Length = 123
Frame 2 hits (HSPs): ___________________________
Frame 1 hits (HSPs): _______________________________________
__________________________________________________
Database sequence: | | | | 123
0 50 100
Plus Strand HSPs:
Score = 200 (70.4 bits), Expect = 4.8e-15, P = 4.8e-15
Identities = 52/95 (54%), Positives = 58/95 (61%), Frame = +1
Query: 235 IRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLWCFEVC 414
IRELT+VVQK F FP SVELYAEKV RGLCAI QAESLRY L G L C
Sbjct: 1 IRELTAVVQKRFGFPEGSVELYAEKVATRGLCAIAQAESLRYKLL------GGLAVRRAC 54
Query: 415 YG-------KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
YG G +V+V K+ + SMKF DG +I S
Sbjct: 55 YGVLRFIMESGAKGCEVVVSGKLRGQRAKSMKFVDGLMIHS 95
Score = 94 (33.1 bits), Expect = 0.00086, P = 0.00086
Identities = 25/65 (38%), Positives = 37/65 (56%), Frame = +2
Query: 275 FPX-TVLNFMLKRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLL 451
FP +V + K +T G+ A+ SL V ACYGVL+F+ME+GA G + ++
Sbjct: 14 FPEGSVELYAEKVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVV 73
Query: 452 IGKLK 466
GKL+
Sbjct: 74 SGKLR 78
>gi|9558270|emb|CAC00396.1| (AL160371) probable 40s ribosomal protein S3
[Leishmania major]
Length = 59
Frame 1 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | 59
0 20 40
Plus Strand HSPs:
Score = 178 (62.7 bits), Expect = 1.0e-12, P = 1.0e-12
Identities = 36/57 (63%), Positives = 46/57 (80%), Frame = +1
Query: 94 AELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQK 264
AEL E L RELAE+G+SGV VT +RTEI+I+AT+T+ VLG GRRIRELT+ +Q+
Sbjct: 3 AELFEFLKRELAEEGFSGVSYHVTTLRTEIVIKATKTREVLGVNGRRIRELTACIQQ 59
>gi|7440102|pir||C75147 ssu ribosomal protein s3p (rps3p) PAB2125 - Pyrococcus
abyssi (strain Orsay) >gi|5457768|emb|CAB49258.1| (AJ248284) SSU
ribosomal protein S3P (rps3P) [Pyrococcus abyssi]
Length = 210
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
Plus Strand HSPs:
Score = 157 (55.3 bits), Expect = 1.7e-10, P = 1.7e-10
Identities = 40/152 (26%), Positives = 74/152 (48%), Frame = +1
Query: 52 MSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGR 231
M+ R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GR
Sbjct: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
Query: 232 RIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYN-SLVAYCSXGLLWCFE 408
RIRELT ++++ F +++ +++ N L A QA + +
Sbjct: 61 RIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYAAMR 118
Query: 409 VCYGKWCXGIQVLVDWKIETPKTXSMKFKDGYL 507
G+++ + K+ + S++F GYL
Sbjct: 119 AIMSNGARGVEIRISGKLTGERAKSVRFYQGYL 151
>gi|6647791|sp|O59424|RS3_PYRHO 30S RIBOSOMAL PROTEIN S3P
>gi|7440097|pir||A71187 probable ribosomal protein S3 - Pyrococcus
horikoshii >gi|3258205|dbj|BAA30888.1| (AP000007) 210aa long
hypothetical 30S ribosomal protein S3 [Pyrococcus horikoshii]
Length = 210
Frame 1 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | | | 210
0 50 100 150 200
Plus Strand HSPs:
Score = 155 (54.6 bits), Expect = 2.8e-10, P = 2.8e-10
Identities = 40/152 (26%), Positives = 74/152 (48%), Frame = +1
Query: 52 MSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGR 231
M+ R F+ + V ++E L +EL GY G++++ TP+ T++II A V+G GR
Sbjct: 1 MAIERYFIREAVKEMLIDEFLEKELRRAGYGGLDIKKTPLGTKVIIFAANPGYVIGRGGR 60
Query: 232 RIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYN-SLVAYCSXGLLWCFE 408
RIRELT ++++ F +++ +++ N L A QA + +
Sbjct: 61 RIRELTRILERQFGLENPQIDV--QEIKNPYLNAKVQAVRIAQALERGIHFRRAAYSAMR 118
Query: 409 VCYGKWCXGIQVLVDWKIETPKTXSMKFKDGYL 507
G+++ + K+ + S++F GYL
Sbjct: 119 AIMNNGARGVEIRLSGKLTGERAKSVRFYQGYL 151
>gi|6094177|sp|O26116|RS3_METTH 30S RIBOSOMAL PROTEIN S3P
>gi|7440099|pir||F69206 ribosomal protein S3 - Methanobacterium
thermoautotrophicum (strain Delta H) >gi|2621055|gb|AAB84528.1|
(AE000795) ribosomal protein S3 (E.coli S3) [Methanothermobacter
thermautotrophicus]
Length = 258
Frame 1 hits (HSPs): _____________________________
Annotated Domains: ______________________________________
__________________________________________________
Database sequence: | | | | | | | 258
0 50 100 150 200 250
__________________
Annotated Domains:
PFAM KH-domain: KH domain 42..90
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 97..181
PRODOM PD001959: RS3(30) RR3(17) RT03(8) 16..63
PRODOM PD150147: RS3(13) 65..205
__________________
Plus Strand HSPs:
Score = 153 (53.9 bits), Expect = 6.9e-10, P = 6.9e-10
Identities = 44/148 (29%), Positives = 76/148 (51%), Frame = +1
Query: 64 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRE 243
+ FV +G+ ++E L +EL GY G++V+VTPM T +++ A R V+G G+ +R
Sbjct: 4 KDFVVEGLRRTRIDEYLEKELERAGYGGMDVQVTPMGTMVVVYAERPGMVIGRGGKTVRA 63
Query: 244 LTSVVQKXFKFPXNSVELYAEKVN--NRGLCAIXQAESLR---YNSLVAYCSXGLLWCFE 408
+T ++ F VE+ V N + A A L+ + VAY + +
Sbjct: 64 ITQKLKNKFDLENPQVEVKEVDVPELNPKIMAHKIAAMLQRGMHFRRVAYTTMRRI---- 119
Query: 409 VCYGKWCXGIQVLVDWKIETPKTXSMKFKDGYL 507
+ G G++V + KI ++ + KF DGY+
Sbjct: 120 MAAG--AQGVEVTISGKIRGARSATAKFTDGYI 150
>gi|133931|sp|P20281|RS3_HALMA 30S RIBOSOMAL PROTEIN S3P (HMAS3) (HS1)
>gi|70852|pir||R3HS3S ribosomal protein S3 [validated] - Haloarcula
marismortui >gi|148807|gb|AAA86865.1| (J05222) ribosomal protein S3
[Haloarcula marismortui]
Length = 304
Frame 1 hits (HSPs): _________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | || 304
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM00298: RIBOSOMALPROTEINS3 23..184
PFAM KH-domain: KH domain 43..91
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 98..182
PRODOM PD001959: RS3(30) RR3(17) RT03(8) 2..64
PRODOM PD150147: RS3(13) 66..206
PRODOM PD110364: RS3_HALMA 208..303
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 141..177
__________________
Plus Strand HSPs:
Score = 148 (52.1 bits), Expect = 4.8e-09, P = 4.8e-09
Identities = 39/152 (25%), Positives = 78/152 (51%), Frame = +1
Query: 52 MSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGR 231
M+ ++F+ DG+ +++E EL GY G++V TPM T+I+++A + V+G+ G+
Sbjct: 1 MADEQQFIEDGLQRTQIDEFFAEELGRAGYGGMDVAKTPMGTQIVLKAEKPGMVIGKGGK 60
Query: 232 RIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVA--YCSXGLLWCF 405
IR++T+ ++ F V++ ++V+ L A A+ L N+L Y
Sbjct: 61 NIRKITTELEDRFNLDDPQVDV--QEVDEPDLNARIVADRLA-NALERGWYFRKAGHTTI 117
Query: 406 EVCYGKWCXGIQVLVDWKIETPKTXSMKFKDGYL 507
+ G ++++ K+ ++ KF GY+
Sbjct: 118 DRIMESGALGAEIVLSGKVTGARSRVEKFNRGYV 151
>gi|1710763|sp|P54034|RS3_METJA 30S RIBOSOMAL PROTEIN S3P
>gi|2129268|pir||E64357 ribosomal protein S3 - Methanococcus
jannaschii >gi|1591163|gb|AAB98450.1| (U67497) SSU ribosomal
protein S3P (rpsC) [Methanococcus jannaschii]
Length = 208
Frame 1 hits (HSPs): ____________________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | 208
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00298: RIBOSOMALPROTEINS3 22..183
PFAM KH-domain: KH domain 42..90
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 97..181
PRODOM PD001959: RS3(30) RR3(17) RT03(8) 6..63
PRODOM PD150147: RS3(13) 65..206
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 140..176
__________________
Plus Strand HSPs:
Score = 140 (49.3 bits), Expect = 1.1e-08, P = 1.1e-08
Identities = 46/148 (31%), Positives = 75/148 (50%), Frame = +1
Query: 64 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRE 243
R FV + V ++E +EL++ GYS ++R TP+ T+III A + V+G +G RIRE
Sbjct: 4 RTFVKENVKRLLIDEYFKKELSKAGYSHCDIRKTPIGTKIIIYAEKPGFVIGRRGSRIRE 63
Query: 244 LTSVVQKXFKFPXNSVELYAEKVNNRGLCA--IXQ--AESLRYNSLVAYCSXGLLWCFEV 411
LT + K F +++ + V N L A + Q A+SL + + G V
Sbjct: 64 LTETLAKEFGVEKPQIDV--KPVENPDLDAQVVAQKVAQSLERG--LHFRRVGHTAVRRV 119
Query: 412 CYGKWCXGIQVLVDWKIETPKTXSMKFKDGYL 507
G+ V++ K+ + + KF GY+
Sbjct: 120 M-NAGAKGVIVIISGKLTGERARTEKFMAGYM 150
>gi|9022435|gb|AAF82383.1|AF281313_1 (AF281313) ribosomal protein S3; RPS3
[Homo sapiens]
Length = 158
Frame 2 hits (HSPs): __________________
Frame 1 hits (HSPs): ________________________
__________________________________________________
Database sequence: | | | | | 158
0 50 100 150
Plus Strand HSPs:
Score = 130 (45.8 bits), Expect = 1.3e-07, P = 1.3e-07
Identities = 37/75 (49%), Positives = 42/75 (56%), Frame = +1
Query: 295 LYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLWCFEVCYG-------KWCXGIQVLVD 453
LYAEKV RGLCAI QAESLRY L G L CYG G +V+V
Sbjct: 1 LYAEKVATRGLCAIAQAESLRYKLL------GGLAVRRACYGVLRFIMESGAKGCEVVVS 54
Query: 454 WKIETPKTXSMKFKDGYLIXS 516
K+ + SMKF DG +I S
Sbjct: 55 GKLRGQRAKSMKFVDGLMIHS 75
Score = 93 (32.7 bits), Expect = 0.035, P = 0.034
Identities = 22/54 (40%), Positives = 32/54 (59%), Frame = +2
Query: 305 KRSTIGVFALXHRLSLSATTPWWPTVXXACYGVLKFVMENGAXGSKSLLIGKLK 466
K +T G+ A+ SL V ACYGVL+F+ME+GA G + ++ GKL+
Sbjct: 5 KVATRGLCAIAQAESLRYKLLGGLAVRRACYGVLRFIMESGAKGCEVVVSGKLR 58
>gi|11383413|pir||T43822 ribosomal protein S3 [validated] - Halobacterium
salinarum >gi|2425182|dbj|BAA22276.1| (AB006961) ribosomal protein
S3 [Halobacterium halobium] >gi|10581165|gb|AAG19942.1| (AE005077)
30S ribosomal protein S3P; Rps3p [Halobacterium sp. NRC-1]
Length = 302
Frame 1 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | || 302
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 134 (47.2 bits), Expect = 1.7e-07, P = 1.7e-07
Identities = 37/152 (24%), Positives = 76/152 (50%), Frame = +1
Query: 52 MSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGR 231
M+ +F+ G+ ++++E ELA GY G+E+ TPM +I+++A + V+G+ G+
Sbjct: 1 MADELEFIEQGLQRSQIDEFFAEELARAGYGGMELAPTPMGMQIVLKAEKPGMVIGKGGK 60
Query: 232 RIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVA--YCSXGLLWCF 405
IR++T+ +++ F +++ ++V L A A+ L N+L Y
Sbjct: 61 NIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLA-NALERGWYFRKAGHTTI 117
Query: 406 EVCYGKWCXGIQVLVDWKIETPKTXSMKFKDGYL 507
+ G ++++ K+ + KF GY+
Sbjct: 118 DRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYI 151
>gi|225948|prf||1404256A ribosomal protein HS4 [Halobacterium halobium]
Length = 83
Frame 1 hits (HSPs): _________________________________________________
__________________________________________________
Database sequence: | | | | | | 83
0 20 40 60 80
Plus Strand HSPs:
Score = 123 (43.3 bits), Expect = 6.9e-07, P = 6.9e-07
Identities = 22/82 (26%), Positives = 49/82 (59%), Frame = +1
Query: 52 MSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGR 231
M+ +F+ G+ ++++E ELA GY +E+ TPM +I+++A + V+G+ G+
Sbjct: 1 MADELEFIEQGLQRSQIDEFFAEELARAGYGSMELAPTPMGMQIVLKAEKPGMVIGKGGK 60
Query: 232 RIRELTSVVQKXFKFPXNSVEL 297
IR++T+ +++ F +++
Sbjct: 61 NIRKITTQLEERFDLEDPQIDV 82
>gi|133930|sp|P15009|RS3_HALHA 30S RIBOSOMAL PROTEIN S3P (HS4) (HHAS3)
>gi|81068|pir||S11598 ribosomal protein S3 - Halobacterium halobium
Length = 302
Frame 1 hits (HSPs): _________________________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | | | || 302
0 50 100 150 200 250 300
__________________
Annotated Domains:
DOMO DM00298: RIBOSOMALPROTEINS3 23..184
PFAM KH-domain: KH domain 43..91
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 98..182
PRODOM PD001959: RS3(30) RR3(17) RT03(8) 13..64
PRODOM PD150147: RS3(13) 66..207
PRODOM PD110363: RS3_HALHA 209..301
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 141..177
__________________
Plus Strand HSPs:
Score = 128 (45.1 bits), Expect = 7.8e-07, P = 7.8e-07
Identities = 36/152 (23%), Positives = 75/152 (49%), Frame = +1
Query: 52 MSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGR 231
M+ +F+ G+ ++++E ELA GY +E+ TPM +I+++A + V+G+ G+
Sbjct: 1 MADELEFIEQGLQRSQIDEFFAEELARAGYGSMELAPTPMGMQIVLKAEKPGMVIGKGGK 60
Query: 232 RIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVA--YCSXGLLWCF 405
IR++T+ +++ F +++ ++V L A A+ L N+L Y
Sbjct: 61 NIRKITTQLEERFDLEDPQIDV--QEVEEPDLNAQIVADRLA-NALERGWYFRKAGHTTI 117
Query: 406 EVCYGKWCXGIQVLVDWKIETPKTXSMKFKDGYL 507
+ G ++++ K+ + KF GY+
Sbjct: 118 DRIMESGALGAEIVLSGKVTGNRGRVEKFNRGYI 151
>gi|11134364|sp|Q9UXA0|RS3_SULSO 30S RIBOSOMAL PROTEIN S3P
>gi|6015765|emb|CAB57592.1| (Y18930) ribosomal protein S3 (HMAS3)
[Sulfolobus solfataricus] >gi|12312262|emb|CAC23125.1| (AL512964)
ribosomal protein S3 (HMAS3) [Sulfolobus solfataricus]
Length = 229
Frame 1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 229
0 50 100 150 200
Plus Strand HSPs:
Score = 121 (42.6 bits), Expect = 2.2e-06, P = 2.2e-06
Identities = 37/151 (24%), Positives = 63/151 (41%), Frame = +1
Query: 64 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRE 243
R F+ + +++E L ++ Y+GVEV TP+ T +II A R ++G GR I++
Sbjct: 6 RYFLEKSIVKVKIDEYLAKQYYNAEYAGVEVLKTPIGTRVIIYAGRPSMIIGRGGRNIKQ 65
Query: 244 LTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAY-CSXGLLWCFEVCYG 420
L + +K F + + V N L A A L Y
Sbjct: 66 LAQIFEKVFGLENPQITI--TNVENPELNARVMAFRLAIALEKGYHFRRAAFISMRRIMN 123
Query: 421 KWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
G ++++ K+ T + K K+G + S
Sbjct: 124 AGALGAEIIISGKLTTERARYEKLKEGIVYKS 155
>gi|6685919|sp|Q9YF78|RS3_AERPE 30S RIBOSOMAL PROTEIN S3P
>gi|7440101|pir||B72728 probable ribosomal protein S3 APE0363 -
Aeropyrum pernix (strain K1) >gi|5104002|dbj|BAA79318.1|
(AP000059) 246aa long hypothetical 30S ribosomal protein S3
[Aeropyrum pernix]
Length = 246
Frame 1 hits (HSPs): ________________________________
__________________________________________________
Database sequence: | | | | | | 246
0 50 100 150 200
Plus Strand HSPs:
Score = 114 (40.1 bits), Expect = 0.00017, P = 0.00017
Identities = 42/159 (26%), Positives = 68/159 (42%), Frame = +1
Query: 40 MATQMSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLG 219
M T++ K F+ G+ +++E L + E GYS V+V T + T I I A R ++G
Sbjct: 1 MPTKVVKH--FLNQGLLRTKIDEWLAQNFYEAGYSRVKVVQTSLGTNITIWAERPALIIG 58
Query: 220 EKGRRIRELTSVVQKXFKFPXNSVELYAEKVNNRGLCAIXQAESL-RYNSLVAYCSXGLL 396
+G IR L V Q F P + + E+ N L A QA + R +
Sbjct: 59 RRGATIRRLQEVFQTVFGLPNPRIRV--EQPENPMLDARVQAFRIARSIERGIHFRRVAF 116
Query: 397 WCFEVCYGKWCXGIQVLVDWKIETPKTXSMKFKDGYLIXS 516
G+++ + K+ + + KFK G + S
Sbjct: 117 AAINRIMSNGALGVEITISGKLTSERARFEKFKAGKVYKS 156
>gi|11499503 ref|NP_070744.1| SSU ribosomal protein S3P (rps3P) [Archaeoglobus
fulgidus] >gi|6094176|sp|O28360|RS3_ARCFU 30S RIBOSOMAL PROTEIN S3P
>gi|7440098|pir||F69489 SSU ribosomal protein S3P (rps3P) homolog -
Archaeoglobus fulgidus >gi|2648625|gb|AAB89335.1| (AE000971) SSU
ribosomal protein S3P (rps3P) [Archaeoglobus fulgidus]
Length = 229
Frame 1 hits (HSPs): _________________________________
__________________________________________________
Database sequence: | | | | | | 229
0 50 100 150 200
Plus Strand HSPs:
Score = 109 (38.4 bits), Expect = 0.00087, P = 0.00087
Identities = 37/153 (24%), Positives = 69/153 (45%), Frame = +1
Query: 52 MSKXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGR 231
M+ RKFV + + + E + E+ G+ GV++ TP+ T++ + R V+G+ GR
Sbjct: 1 MAVERKFVQERLKKLMVKEWIKDEVRSAGFGGVDILRTPLGTQVTLFVERPGLVIGKGGR 60
Query: 232 RIRELTSVVQKX-FKFPXNSVELYAEKVNNRGLCAIXQAESLRYNSLVAYCSXGLLWCFE 408
RI+ LT ++ + P SV+ + N L A A +L L+
Sbjct: 61 RIKALTEKLKDFGIENPQVSVDEVEKPEFNAQLMASLLARALERGWYFRRAGYRFLYRIM 120
Query: 409 VCYGKWCXGIQVLVDWKIETPKTXSMKFKDGYLI 510
K C ++ + K+ + + + KF G ++
Sbjct: 121 EAGAKGC---EIEISGKLVSERARTEKFVAGTIV 151
>gi|8247324|emb|CAB92940.1| (AJ290932) putative 40S ribosomal protein S3
[Plasmodium falciparum]
Length = 110
Frame 2 hits (HSPs): ______________
Frame 1 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | | | | 110
0 20 40 60 80 100
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 0.023, P = 0.023
Identities = 15/29 (51%), Positives = 22/29 (75%), Frame = +2
Query: 380 VXXACYGVLKFVMENGAXGSKSLLIGKLK 466
V ACYGVL+ +ME+GA G + ++ GKL+
Sbjct: 5 VRRACYGVLRHIMESGAKGCEVIVSGKLR 33
Score = 72 (25.3 bits), Expect = 4.2, P = 0.99
Identities = 13/28 (46%), Positives = 19/28 (67%), Frame = +1
Query: 433 GIQVLVDWKIETPKTXSMKFKDGYLIXS 516
G +V+V K+ + SMKF+DGYLI +
Sbjct: 23 GCEVIVSGKLRAQRAKSMKFRDGYLIST 50
>gi|10640611|emb|CAC12389.1| (AL445067) probable 30S ribosomal protein S3
[Thermoplasma acidophilum]
Length = 225
Frame 1 hits (HSPs): __________________
__________________________________________________
Database sequence: | | | | | | 225
0 50 100 150 200
Plus Strand HSPs:
Score = 98 (34.5 bits), Expect = 0.027, P = 0.027
Identities = 19/80 (23%), Positives = 41/80 (51%), Frame = +1
Query: 58 KXRKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRI 237
K RKF+ + V + E + +E G+ + ++ TP T I + R V+G +G ++
Sbjct: 2 KERKFINEAVKRLLVCEYVVKETENAGFGNMVMKRTPFGTNITLYVNRPGLVIGRRGSKV 61
Query: 238 RELTSVVQKXFKFPXNSVEL 297
+++T ++K + +E+
Sbjct: 62 QQMTDTLEKKYGIETPQIEV 81
>gi|4680363|gb|AAD27643.1|AF133129_1 (AF133129) ribosomal protein S3 [Meriones
unguiculatus]
Length = 128
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 128
0 50 100
Plus Strand HSPs:
Score = 86 (30.3 bits), Expect = 0.087, P = 0.084
Identities = 15/26 (57%), Positives = 22/26 (84%), Frame = +2
Query: 389 ACYGVLKFVMENGAXGSKSLLIGKLK 466
ACYGVL+F+ME+GA G + ++ GKL+
Sbjct: 3 ACYGVLRFIMESGAKGCEVVVSGKLR 28
>gi|7473848|pir||E75534 ribosomal protein S3 - Deinococcus radiodurans (strain
R1) >gi|6457991|gb|AAF09898.1|AE001892_9 (AE001892) ribosomal
protein S3 [Deinococcus radiodurans]
Length = 249
Frame 2 hits (HSPs): ____
Frame 1 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | | | 249
0 50 100 150 200
Plus Strand HSPs:
Score = 75 (26.4 bits), Expect = 0.63, Sum P(2) = 0.47
Identities = 13/56 (23%), Positives = 32/56 (57%), Frame = +1
Query: 97 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQK 264
++ +++ ++LA G + +E+ + +II A + V+G+ G I+EL +++
Sbjct: 38 QIRQLINKKLAAAGIARIEIERAGQQVNVIISAAKPGVVIGKGGESIKELRGDIER 93
Score = 47 (16.5 bits), Expect = 0.63, Sum P(2) = 0.47
Identities = 10/17 (58%), Positives = 13/17 (76%), Frame = +2
Query: 413 VMENGAXGSKSLLIGKL 463
VME+GA G K +L G+L
Sbjct: 142 VMESGARGVKVILSGRL 158
>gi|81028|pir||S11609 ribosomal protein S3 - Halobacterium cutirubrum
(fragment)
Length = 40
Frame 1 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | 40
0 20
Plus Strand HSPs:
Score = 65 (22.9 bits), Expect = 2.2, P = 0.89
Identities = 10/35 (28%), Positives = 22/35 (62%), Frame = +1
Query: 67 KFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPM 171
+F+ +G+ ++++E +LA GY +++ TPM
Sbjct: 5 EFIEEGLQRSQIDEFFAEZLARAGYGSMZLAPTPM 39
>gi|7482525|pir||E69140 hypothetical protein MTH316 - Methanobacterium
thermoautotrophicum (strain Delta H) >gi|2621370|gb|AAB84822.1|
(AE000816) unknown [Methanothermobacter thermautotrophicus]
Length = 114
Frame 1 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | 114
0 50 100
Plus Strand HSPs:
Score = 74 (26.0 bits), Expect = 2.7, P = 0.93
Identities = 22/72 (30%), Positives = 39/72 (54%), Frame = +1
Query: 64 RKFVADGVFFAELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGR--RI 237
R +V D F E+N L + E + GVE E ++R ++++ + EK + I
Sbjct: 29 RDYVDD--LFEEINR-LDANVIELDFEGVEFMSRSFAHEYLMRKSKSEKDIYEKNKCPSI 85
Query: 238 RELTSVVQKXFKFP 279
+++ SVV++ FK P
Sbjct: 86 QKMLSVVERSFKNP 99
>gi|1173246|sp|P46247|RS3_ACHFL 30S RIBOSOMAL PROTEIN S3
>gi|456686|gb|AAA21915.1| (L22466) ribosomal protein S3 [Mesoplasma
florum]
Length = 241
Frame 1 hits (HSPs): ________________
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | | | 241
0 50 100 150 200
__________________
Annotated Domains:
DOMO DM00349: RIBOSOMALPROTEINS3 1..41
DOMO DM00298: RIBOSOMALPROTEINS3 43..207
PFAM Ribosomal_S3_N: Ribosomal protein S3, N- 1..62
PFAM KH-domain: KH domain 65..115
PFAM Ribosomal_S3_C: Ribosomal protein S3, C- 122..205
PRODOM PD001959: RS3(30) RR3(17) RT03(8) 1..86
PRODOM PD000851: RS3(25) RR3(17) RT03(7) 105..206
PROSITE RIBOSOMAL_S3: Ribosomal protein S3 signa 166..200
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Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 3.1, P = 0.96
Identities = 20/74 (27%), Positives = 37/74 (50%), Frame = +1
Query: 97 ELNEVLTRELAEDGYSGVEVRVTPMRTEIIIRATRTQAVLGEKGRRIRELTSVVQKXFKF 276
++ E + + L + S +++ T +IIR R VLG++G+ + + + VQK K
Sbjct: 38 KIREGVLKLLKDAAVSKIKIERTNSNITLIIRTARPAIVLGQEGKNVSNIATAVQKIAKD 97
Query: 277 PXNSVELYAEKVNN 318
VE+ +V N
Sbjct: 98 RNLKVEVKVIEVKN 111
>gi|1763622|gb|AAB39751.1| (U78793) folate receptor alpha [Homo sapiens]
>gi|1763624|gb|AAB39752.1| (U78794) folate receptor alpha [Homo
sapiens]
Length = 56
Frame -1 hits (HSPs): _______________
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Database sequence: | | | | 56
0 20 40
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 8.2, P = 1.0
Identities = 10/17 (58%), Positives = 14/17 (82%), Frame = -1
Query: 74 TNFLFLLIWVAIVGESE 24
T L LL+WVA+VGE++
Sbjct: 7 TQLLLLLVWVAVVGEAQ 23
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.356 0.163 0.596
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.342 0.149 0.528
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.324 0.137 0.414
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.339 0.142 0.444
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.361 0.161 0.629
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.329 0.147 0.464
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 173 165 10. 75 3 12 22 0.10 34
30 0.10 37
+2 0 173 163 10. 75 3 12 22 0.10 34
30 0.10 37
+1 0 173 165 10. 75 3 12 22 0.10 34
30 0.10 37
-1 0 173 165 10. 75 3 12 22 0.10 34
30 0.10 37
-2 0 173 165 10. 75 3 12 22 0.10 34
30 0.10 37
-3 0 173 163 10. 75 3 12 22 0.10 34
30 0.10 37
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 44
No. of states in DFA: 594 (59 KB)
Total size of DFA: 181 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 164.10u 0.94s 165.04t Elapsed: 00:00:28
Total cpu time: 164.15u 1.01s 165.16t Elapsed: 00:00:28
Start: Mon Oct 1 22:45:32 2001 End: Mon Oct 1 22:46:00 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000