NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs1900032          
refSNP ID: rs1900032
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:92/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/G
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss13593359 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs1900032 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss2782979TSC-CSHL|TSC0941398fwd/TA/Gtggaagtattccctcctgtttttcaaaatatttgagcaggatttgtactaggtctttaaa01/02/0110/10/0392Genomicunknown
ss13593359BCM_SSAHASNP|chr9.NT_078071.2_30594fwd/TA/Gtggaagtattccctcctgtttttcaaaatatttgagcaggatttgtactaggtctttaaa11/05/0311/22/03130Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs1900032|allelePos=501|totalLen=1001|taxid=9606|snpclass=1|alleles='A/G'|mol=Genomic|build=130
 atgttaaaca acagtggtga cagggggcat ccttatcatg ttccagatct tagaggaaaa
 gctttccatt tttccccatt ccatatgatt ctagctgtgg gtgtctttcc tgtagttttt
 attatgttgc ggtatgtttc ttctgtgcct gtttctttga ggatttatag catgaaggga
 tgttgaattt catatgcttt tttggtttca gttgacatga tcatacagtt tttgtcgttt
 atttggttga tatgatgtat cacattgtat gttgagtgac tcttgcattc cagggataca
 tcccagttga tcatgatgaa ttatcttttt aatgtattac tgaatttgat tcactggtat
 tctgttgagg atttttgcat caatattaga gatcctgtcc tgtagttttc ttctttgatg
 cttttatctg attttcgtat cacagtaata atggtctcat agaataagtt tggaagtatt
 ccctcctgtt tttcaaaata
 R
 tttgagcagg atttgtacta ggtctttaaa ttgtttggtg tgaagccatc agcagtgaag
 acatcatcag ttcctgggct tttctttact gggagacttt ttctgatggc ttcaatctca
 ttacttgtta ccaatctgtt ctggtcttgg atgttttcat tgtttaacct aagtaggttg
 tatgcatcta ggaatttgcc aatttctact aggctttcca atttattggc atataatagc
 cagttatgat cctttgaatt tctgaagtat tagttgtaat gtctcctttt tttaatctgt
 tgattttatt tatttgaatc ttgtctcttt tcttaggctg gttaaaagtt tgtcaatttt
 gtttagcttt ccagaaaacc aacttttcgt ttaatcttgt gtgtttttta tttcaatttt
 gtttctgcta cgatcttatt tattttcttA TTTTCGGTTT AGTTTGTTCT TACTTTACTA
 GTTCTTTAAG ATGTATTGTT

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer: rs1900032 was not linked to the human genome 36.3 because it aligned to more than 2 locations on the genome.
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
10NW_924606.115204438740896minusCalt_assembly_1CeleraCeleraview203
16NW_926295.14449228195568plusGalt_assembly_1CeleraCeleraview203
16NW_001838276.2467130159012minusCalt_assembly_8HuRefHuRefview203
2NW_001838805.132141989034823plusGalt_assembly_8HuRefHuRefview203
22NW_001838745.17367155609582minusCalt_assembly_8HuRefHuRefview203
9NT_078055.414079042794741minusTref_assemblyreferencereferenceview203
9NT_078065.24339866696561minusTref_assemblyreferencereferenceview203
9NT_079533.113385367031507plusAref_assemblyreferencereferenceview203
9NT_078070.239725469015459plusAref_assemblyreferencereferenceview203
9NT_078071.33059969380961plusAref_assemblyreferencereferenceview203
9NT_113816.12314869581697plusAref_assemblyreferencereferenceview203
UnNW_927780.129621unplacedminusCalt_assembly_1CeleraCeleraview203

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_078071
dbSNP Blast Analysis
GenBank HTGS Finished:
AL359955.25 AL445665.20 AL512605.13 AL591379.18 AL845321.4 BX284632.11

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .