Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss839493	SC_JCM|AL356652.9_2889		fwd/B	C/T	acaaccagccagaggcagagatttcctctc	gggcctaaaggtcaaacaactccagagcag	07/27/00	04/07/04	83	Genomic			unknown
ss1729967	KWOK|OVLP-000925-296534		fwd/B	C/T	acaaccagccagaggcagagatttcctctc	gggcctaaaggtcaaacaactccagagcag	10/05/00	10/10/03	87	Genomic			97 %
ss3074130	TSC-CSHL|TSC1166126		fwd/B	C/T	acaaccagccagaggcagagatttcctctc	gggcctaaaggtcaaacaactccagagcag	06/07/01	10/10/03	96	Genomic			unknown
ss3396471	SC_JCM|chr_20_35446611		fwd/B	C/T	acaaccagccagaggcagagatttcctctc	gggcctaaaggtcaaacaactccagagcag	09/24/01	10/10/03	100	Genomic			unknown
ss8375214	SC_SNP|NT_028392.4_3890578		fwd/B	C/T	acaaccagccagaggcagagatttcctctc	gggcctaaaggtcaaacaactccagagcag	04/17/03	10/25/06	114	Genomic			unknown
ss16897677	CSHL-HAPMAP|CSHL-HuAA-200402.chr20.NT_028392.4_3890578		fwd/B	C/T	acaaccagccagaggcagagatttcctctc	gggcctaaaggtcaaacaactccagagcag	02/17/04	03/04/04	120	Genomic			unknown
ss19478395	CSHL-HAPMAP|CSHL-HuDD-200402.chr20.NT_028392.4_3890578		fwd/B	C/T	acaaccagccagaggcagagatttcctctc	gggcctaaaggtcaaacaactccagagcag	02/20/04	03/04/04	120	Genomic			unknown
ss21788369	SSAHASNP|WGSA-200403-chr20.chr20.NT_028392.4_3890578		fwd/B	C/T	acaaccagccagaggcagagatttcctctc	gggcctaaaggtcaaacaactccagagcag	03/20/04	03/20/04	123	Genomic			unknown
ss69240451	PERLEGEN|PGP06744994		fwd/B	C/T	acaaccagccagaggcagagatttcctctc	gggcctaaaggtcaaacaactccagagcag	01/30/07	08/14/07	127	Genomic			unknown
ss84316104	HGSV|Cor18555_SNV_20070510.chr20_33187471		fwd/B	C/T	acaaccagccagaggcagagatttcctctc	gggcctaaaggtcaaacaactccagagcag	11/27/07	12/07/07	130	Genomic			unknown
ss91689251	BCMHGSC_JDW|JWB-1438427		fwd/B	C/T	acaaccagccagaggcagagatttcctctc	gggcctaaaggtcaaacaactccagagcag	02/26/08	03/02/08	129	Genomic			unknown

Fasta sequence   (Legend)

 caccactgca ctccagcctg ggtgacagag cgagaccctg tctcaaaata ataataataa
 taaacaaaGC CATTCATAGA CTTTAAATAA AGATCTCTGC TTTAAATAAA GAGTATAGGG
 GCTAAATTAT TTTTAAAGGG AAGCAAAATA GGATATAAAC CACTAAACCA CGGATATAGT
 ATGAccctcg atttataggt agggaaaacc atgcctgtaa agaagtaatt cagccacagg
 tcacacagag agagtcaaac agagctggga tgggaacgcc tcccctgtgc ccaccccagc
 cccagtccag ttctctgccc GCCCCACCCA AGTGGCACCC AAGTGCCTTC TGGTTCAAGA
 CGAGAACTGG ACAACCAGCC AGAGGCAGAG ATTTCCTCTC
 Y
 GGGCCTAAAG GTCAAACAAC TCCAGAGCAG CCTATGCGTC ACCAAACTGT GAACAAAGGT
 GTCGACACTT CCAAGAACCA CAGGGTCTAG CAACTGTGTC TGCCACAGAC AAGAAACTTG
 CAATCTGGCA GGCACCAGCG GGAGAGCAAG TCACAACCAG GAAGGGCTCT AAGCAATATT
 TCAGAAAAAG TCAGGCTGTA ATAAAAAGAA GAGGAGTGAC AAAATCCTGT TTCTTGACCT
 TTTTTTATAA AATGACCAAT GACCAAAAAT AATTAAATTA TAAAGGAGGA GCAGCTAGGC
 AGAGTTTCCA GAGTTTCCTC CAGGGATGAA TCACACAGGA CACAATGTCT GCAAGGAGAC
 GCTCAAGCCA TGAGCCATGA GCCATGAGTG AGACCTGAAC

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_028392->NM_018217 function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	C/C	C/T	T/T	HWP	C	T
ss69240451	HapMap-CEU	European	120	GF		0.533	0.467		0.267	0.733
	HapMap-HCB	Asian	90	GF	0.044	0.422	0.533		0.256	0.744
	HapMap-JPT	Asian	90	GF	0.022	0.667	0.311		0.356	0.644
	HapMap-YRI	Sub-Saharan African	120	GF	0.017	0.917	0.067		0.475	0.525
ss8375214	HapMap-CEU	European	120	IG	0.550	0.400	0.050	0.655	0.750	0.250
	HapMap-HCB	Asian	90	IG	0.422	0.489	0.089	0.527	0.667	0.333
	HapMap-JPT	Asian	90	IG	0.711	0.267	0.022	1.000	0.844	0.156
	HapMap-YRI	Sub-Saharan African	118	IG	0.932	0.068		1.000	0.966	0.034
ss839493	SC_12_A	Asian	16	IG	0.375	0.500	0.125	1.000	0.625	0.375
	SC_12_AA	African American	22	IG	0.818	0.182		0.752	0.909	0.091
	SC_12_C	European	14	IG	0.286	0.571	0.143	0.752	0.571	0.429