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Library:7619 (dbEST ID)
Organism: | Homo sapiens |
Developmental stage: | Adult |
Organ: | colon_ins |
Vector: | puc18 |
Vector type: | Plasmid |
Cloning site 1: | SmaI |
Cloning site 2: | SmaI |
A mini-library was made by cloning products derived from ORESTES PCR (U.S. Letters Patent application No. 196,716 - Ludwig Institute for Cancer Research) profiles into the pUC 18 vector. Reverse transcription of tissue mRNA and cDNA amplification were performed under low stringency conditions.
Source: Simpson A.J.G., Ludwig Institute for Cancer Research
122 ESTs from this library were grouped into 97 UniGene entries (putative genes) [UniGene build #218, 05-Jan-2009]. EST counts for each entry may be used to calculate an approximate expression level in transcripts per million (TPM).
ESTs | TPM | UniGene Entry | ||
---|---|---|---|---|
8 | 65574 | Hs.625725 | Basal cell adhesion molecule (Lutheran blood group). | |
5 | 40984 | Hs.433343 | Serine/arginine repetitive matrix 2. | |
3 | 24590 | Hs.653312 | Transcribed locus. | |
3 | 24590 | Hs.300816 | RAB1B, member RAS oncogene family. | |
2 | 16393 | Hs.700112 | Immunoglobulin heavy locus. | |
2 | 16393 | Hs.590958 | FBJ murine osteosarcoma viral oncogene homolog B. | |
2 | 16393 | Hs.548018 | LIM and SH3 protein 1. | |
2 | 16393 | Hs.511605 | Annexin A2. | |
2 | 16393 | Hs.502842 | Calpain 1, (mu/I) large subunit. | |
2 | 16393 | Hs.446852 | Eukaryotic translation initiation factor 3, subunit L. | |
2 | 16393 | Hs.290758 | Damage-specific DNA binding protein 1, 127kDa. | |
2 | 16393 | Hs.270017 | Polymerase (RNA) II (DNA directed) polypeptide A, 220kDa. | |
2 | 16393 | Hs.203717 | Fibronectin 1. | |
2 | 16393 | Hs.154578 | Myosin VIIB. | |
1 | 8197 | Hs.93002 | Ubiquitin-conjugating enzyme E2C. | |
1 | 8197 | Hs.89649 | Epoxide hydrolase 1, microsomal (xenobiotic). | |
1 | 8197 | Hs.78582 | Developmentally regulated GTP binding protein 2. | |
1 | 8197 | Hs.75199 | Protein phosphatase 2, regulatory subunit B', beta isoform. | |
1 | 8197 | Hs.75069 | Serine hydroxymethyltransferase 2 (mitochondrial). | |
1 | 8197 | Hs.74576 | GDP dissociation inhibitor 1. | |
1 | 8197 | Hs.73090 | Nuclear factor of kappa light polypeptide gene enhancer in B-cells 2 (p49/p100). | |
1 | 8197 | Hs.716105 | Transcribed locus, moderately similar to NP_001099421.1 phosphoinositide-3-kinase, class 2, beta polypeptide [Rattus norvegicus]. | |
1 | 8197 | Hs.708975 | EF-hand calcium binding domain 4A. | |
1 | 8197 | Hs.703889 | Immunoglobulin heavy chain variable region (IGHV gene), clone slvl18. | |
1 | 8197 | Hs.694019 | Transcribed locus, moderately similar to NP_000880.1 integrin, beta 7 [Homo sapiens]. | |
1 | 8197 | Hs.679335 | Transcribed locus. | |
1 | 8197 | Hs.673372 | Transcribed locus, strongly similar to NP_001129575.1 transmembrane protein 132C [Homo sapiens]. | |
1 | 8197 | Hs.661431 | Hypothetical protein LOC100130275. | |
1 | 8197 | Hs.655734 | Similar to GLI-Kruppel family member HKR1. | |
1 | 8197 | Hs.655431 | Leukotriene B4 receptor. | |
1 | 8197 | Hs.654389 | Cut-like homeobox 1. | |
1 | 8197 | Hs.647718 | V-set and immunoglobulin domain containing 8. | |
1 | 8197 | Hs.641214 | Transcribed locus. | |
1 | 8197 | Hs.591104 | Bcl2 modifying factor. | |
1 | 8197 | Hs.562015 | Transcribed locus. | |
1 | 8197 | Hs.555947 | Lymphoid enhancer-binding factor 1. | |
1 | 8197 | Hs.533782 | Keratin 8. | |
1 | 8197 | Hs.533282 | Non-POU domain containing, octamer-binding. | |
1 | 8197 | Hs.533273 | Ubiquitin-like modifier activating enzyme 1. | |
1 | 8197 | Hs.5302 | Lectin, galactoside-binding, soluble, 4. | |
1 | 8197 | Hs.529755 | SHANK-associated RH domain interactor. | |
1 | 8197 | Hs.529555 | Transcribed locus, strongly similar to NP_032998.1 prothymosin alpha [Mus musculus]. | |
1 | 8197 | Hs.528007 | U2 small nuclear RNA auxiliary factor 2. | |
1 | 8197 | Hs.524763 | Two pore segment channel 1. | |
1 | 8197 | Hs.524214 | Myeloid leukemia factor 2. | |
1 | 8197 | Hs.515053 | Amino-terminal enhancer of split. | |
1 | 8197 | Hs.514051 | G protein-coupled receptor kinase interacting ArfGAP 1. | |
1 | 8197 | Hs.513242 | Ras homolog gene family, member T2. | |
1 | 8197 | Hs.510635 | Immunoglobulin heavy constant gamma 1 (G1m marker). | |
1 | 8197 | Hs.504998 | Uridine-cytidine kinase 1-like 1. | |
1 | 8197 | Hs.502823 | Peroxiredoxin 5. | |
1 | 8197 | Hs.502116 | Neuron navigator 2. | |
1 | 8197 | Hs.500822 | F-box and WD repeat domain containing 4. | |
1 | 8197 | Hs.485449 | GTP binding protein 2. | |
1 | 8197 | Hs.474213 | Ubiquitin fusion degradation 1 like (yeast). | |
1 | 8197 | Hs.469798 | TSC22 domain family, member 4. | |
1 | 8197 | Hs.464210 | Synaptogyrin 2. | |
1 | 8197 | Hs.462998 | Insulin-like growth factor binding protein 4. | |
1 | 8197 | Hs.461647 | KIAA0182. | |
1 | 8197 | Hs.455336 | Nasal embryonic LHRH factor. | |
1 | 8197 | Hs.442623 | CDNA FLJ30141 fis, clone BRACE2000148. | |
1 | 8197 | Hs.436568 | CD74 molecule, major histocompatibility complex, class II invariant chain. | |
1 | 8197 | Hs.433845 | Keratin 5. | |
1 | 8197 | Hs.432760 | Capping protein (actin filament) muscle Z-line, beta. | |
1 | 8197 | Hs.42853 | Tenascin XB. | |
1 | 8197 | Hs.421907 | Glioma tumor suppressor candidate region gene 2. | |
1 | 8197 | Hs.413748 | Protein tyrosine phosphatase, receptor type, f polypeptide (PTPRF), interacting protein (liprin), alpha 3. | |
1 | 8197 | Hs.412842 | Cell division cycle 123 homolog (S. cerevisiae). | |
1 | 8197 | Hs.410977 | Transgelin. | |
1 | 8197 | Hs.405987 | Nucleolar complex associated 2 homolog (S. cerevisiae). | |
1 | 8197 | Hs.386390 | Transcriptional adaptor 3 (NGG1 homolog, yeast)-like. | |
1 | 8197 | Hs.3745 | Milk fat globule-EGF factor 8 protein. | |
1 | 8197 | Hs.370254 | BCL2-associated agonist of cell death. | |
1 | 8197 | Hs.343244 | Adaptor-related protein complex 1, gamma 2 subunit. | |
1 | 8197 | Hs.334684 | Vacuolar protein sorting 26 homolog B (S. pombe). | |
1 | 8197 | Hs.299315 | Dihydropyrimidinase-like 5. | |
1 | 8197 | Hs.292356 | Cytochrome b-245, beta polypeptide. | |
1 | 8197 | Hs.292078 | La ribonucleoprotein domain family, member 1. | |
1 | 8197 | Hs.288959 | Acyl-CoA synthetase family member 2. | |
1 | 8197 | Hs.2785 | Keratin 17. | |
1 | 8197 | Hs.270291 | Actinin, alpha 4. | |
1 | 8197 | Hs.256022 | RAR-related orphan receptor C. | |
1 | 8197 | Hs.246413 | RNA binding motif protein 12. | |
1 | 8197 | Hs.2399 | Matrix metallopeptidase 14 (membrane-inserted). | |
1 | 8197 | Hs.23361 | Ankyrin repeat and BTB (POZ) domain containing 2. | |
1 | 8197 | Hs.22907 | Xylosyltransferase I. | |
1 | 8197 | Hs.211594 | Proteasome (prosome, macropain) 26S subunit, ATPase, 4. | |
1 | 8197 | Hs.204238 | Lipocalin 2. | |
1 | 8197 | Hs.181163 | High-mobility group nucleosomal binding domain 2. | |
1 | 8197 | Hs.179986 | Flotillin 1. | |
1 | 8197 | Hs.172613 | Solute carrier family 12 (potassium/chloride transporters), member 7. | |
1 | 8197 | Hs.160958 | Cell division cycle 37 homolog (S. cerevisiae). | |
1 | 8197 | Hs.152717 | Family with sequence similarity 65, member A. | |
1 | 8197 | Hs.150580 | Eukaryotic translation initiation factor 1. | |
1 | 8197 | Hs.149261 | Runt-related transcription factor 1. | |
1 | 8197 | Hs.1437 | Glucosidase, alpha; acid. | |
1 | 8197 | Hs.119598 | Ribosomal protein L3. |
Source: NCBI UniGene
206 EST sequences from this library have been submitted to the public sequence database as of 05-Jan-2009.
Source: NCBI GenBank
Click the button to save sequences to a file (FASTA format)
Source: NCBI Clone Registry
Shotgun sequencing of the human transcriptome with ORF expressed sequence tags. Dias Neto E, et al., Proc Natl Acad Sci U S A 97, 3491-3496 (2000).