R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
WARNING: Descriptions of 606 database sequences were not reported due to the
limiting value of parameter V = 50.
>gi|11358628|pir||T51753 polyubiquitin [imported] - Arabidopsis thaliana
(fragment) >gi|3158372|gb|AAC39466.1| (AF035383) polyubiquitin
[Arabidopsis thaliana]
Length = 137
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ________ ______
Frame 1 hits (HSPs): ________________________ _____
__________________________________________________
Database sequence: | | | | 137
0 50 100
Plus Strand HSPs:
Score = 374 (131.7 bits), Expect = 7.6e-45, Sum P(3) = 7.6e-45
Identities = 75/79 (94%), Positives = 75/79 (94%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 30 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 89
Query: 240 QKESTLHLVLRLRGGMQIF 296
QKESTLHLVLRLRGGMQIF
Sbjct: 90 QKESTLHLVLRLRGGMQIF 108
Score = 195 (68.6 bits), Expect = 1.6e-14, P = 1.6e-14
Identities = 54/129 (41%), Positives = 71/129 (55%), Frame = +3
Query: 201 QLEDGRTLADYNIQKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSR 380
QLEDGRTLADYNIQKESTLHLVLRLRGGMQIF + + + T + + + +
Sbjct: 1 QLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQ 59
Query: 381 TRKESPPEPATSHPSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYN 560
++ PP+ + GK LE R L + LVLRLRGGM I +
Sbjct: 60 DKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTIS 118
Query: 561 PKIQNSQTI 587
++++S TI
Sbjct: 119 LEVESSDTI 127
Score = 130 (45.8 bits), Expect = 1.2e-07, P = 1.2e-07
Identities = 27/32 (84%), Positives = 28/32 (87%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDK 155
Q FVK LTGK I+LEVESSDTIDNVKAK QDK
Sbjct: 106 QIFVKTLTGKTISLEVESSDTIDNVKAKIQDK 137
Score = 107 (37.7 bits), Expect = 5.8e-05, P = 5.8e-05
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 46 ESSDTIDNVKAKIQDKEGIPP 66
Score = 106 (37.3 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 33 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 88
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 89 IQKESTLH 96
Score = 78 (27.5 bits), Expect = 7.6e-45, Sum P(3) = 7.6e-45
Identities = 16/16 (100%), Positives = 16/16 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDK 385
ESSDTIDNVKAKIQDK
Sbjct: 122 ESSDTIDNVKAKIQDK 137
Score = 57 (20.1 bits), Expect = 7.6e-45, Sum P(3) = 7.6e-45
Identities = 12/13 (92%), Positives = 13/13 (100%), Frame = +1
Query: 298 VKTLTGKTITLEV 336
VKTLTGKTI+LEV
Sbjct: 109 VKTLTGKTISLEV 121
>gi|4586594|dbj|BAA76429.1| (AB025001) polyubiquitin [Cicer arietinum]
Length = 108
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___________ _______
Frame 1 hits (HSPs): _______________________________ ______
__________________________________________________
Database sequence: | | | | | | | 108
0 20 40 60 80 100
Plus Strand HSPs:
Score = 374 (131.7 bits), Expect = 9.6e-45, Sum P(3) = 9.6e-45
Identities = 75/79 (94%), Positives = 75/79 (94%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIF 296
QKESTLHLVLRLRGGMQIF
Sbjct: 62 QKESTLHLVLRLRGGMQIF 80
Score = 129 (45.4 bits), Expect = 1.6e-07, P = 1.6e-07
Identities = 27/31 (87%), Positives = 27/31 (87%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQD 152
Q FVK LTGK ITLEVESSDTIDNVKAK QD
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQD 108
Score = 107 (37.7 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 106 (37.3 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 73 (25.7 bits), Expect = 9.6e-45, Sum P(3) = 9.6e-45
Identities = 15/15 (100%), Positives = 15/15 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQD 382
ESSDTIDNVKAKIQD
Sbjct: 94 ESSDTIDNVKAKIQD 108
Score = 61 (21.5 bits), Expect = 9.6e-45, Sum P(3) = 9.6e-45
Identities = 13/13 (100%), Positives = 13/13 (100%), Frame = +1
Query: 298 VKTLTGKTITLEV 336
VKTLTGKTITLEV
Sbjct: 81 VKTLTGKTITLEV 93
Score = 61 (21.5 bits), Expect = 7.2e-10, Sum P(2) = 7.2e-10
Identities = 19/53 (35%), Positives = 24/53 (45%), Frame = +3
Query: 429 GKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTI 587
GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 47 GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 99
>gi|2641213|gb|AAB86858.1| (AF031628) polyubiquitin [Schizophyllum commune]
Length = 139
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ________ ________
Frame 1 hits (HSPs): ________________________ ______________________
__________________________________________________
Database sequence: | | | | 139
0 50 100
Plus Strand HSPs:
Score = 371 (130.6 bits), Expect = 9.7e-43, Sum P(2) = 9.7e-43
Identities = 74/79 (93%), Positives = 75/79 (94%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 240 QKESTLHLVLRLRGGMQIF 296
QKESTLHLVLRLRGGMQIF
Sbjct: 62 QKESTLHLVLRLRGGMQIF 80
Score = 287 (101.0 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 57/62 (91%), Positives = 58/62 (93%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Query: 240 QK 245
QK
Sbjct: 138 QK 139
Score = 107 (37.7 bits), Expect = 9.7e-43, Sum P(2) = 9.7e-43
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 106 (37.3 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 80 (28.2 bits), Expect = 6.7e-40, Sum P(2) = 6.7e-40
Identities = 29/61 (47%), Positives = 37/61 (60%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 136
Query: 472 IXK 480
I K
Sbjct: 137 IQK 139
Score = 77 (27.1 bits), Expect = 1.6e-11, Sum P(2) = 1.6e-11
Identities = 23/77 (29%), Positives = 36/77 (46%), Frame = +3
Query: 429 GKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX--XRV 602
GK LE R L + LVLRLRGGM I ++++S TI ++
Sbjct: 47 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI 106
Query: 603 NSRKEVPP-KHKVFFPG 650
++ +PP + ++ F G
Sbjct: 107 QDKEGIPPDQQRLIFAG 123
>gi|84834|pir||JH0302 polyubiquitin - tobacco hornworm (fragments)
Length = 181
Frame 3 hits (HSPs): __________________________________________________
Frame 1 hits (HSPs): __________________ ____ ___________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 181
0 50 100 150
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology (fragment) #l 77..91
Entrez domain: ubiquitin homology (fragment) #l 92..104
Entrez domain: ubiquitin homology #label UBH4 105..180
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 131..156
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________
Plus Strand HSPs:
Score = 362 (127.4 bits), Expect = 6.3e-42, Sum P(3) = 6.3e-42
Identities = 72/79 (91%), Positives = 74/79 (93%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 240 QKESTLHLVLRLRGGMQIF 296
QKESTLHLVLRLRGGMQIF
Sbjct: 62 QKESTLHLVLRLRGGMQIF 80
Score = 342 (120.4 bits), Expect = 4.3e-30, P = 4.3e-30
Identities = 68/75 (90%), Positives = 70/75 (93%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 106 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 165
Query: 240 QKESTLHLVLRLRGG 284
QKESTLHLVLRLRGG
Sbjct: 166 QKESTLHLVLRLRGG 180
Score = 114 (40.1 bits), Expect = 0.00024, P = 0.00024
Identities = 37/101 (36%), Positives = 50/101 (49%), Frame = +3
Query: 216 RTLADYNIQKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKES 395
+TL I ESTLHLVLRLRGGMQIF + + + T + + + + ++
Sbjct: 82 KTLTGKTITLESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGI 140
Query: 396 PPEPATSHPSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
PP+ + GK LE R L + LVLRLRGG
Sbjct: 141 PPDQQRLIFA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 180
Score = 106 (37.3 bits), Expect = 1.1e-41, Sum P(2) = 1.1e-41
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 109 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 164
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 165 IQKESTLH 172
Score = 106 (37.3 bits), Expect = 8.9e-07, Sum P(2) = 8.9e-07
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 62 (21.8 bits), Expect = 6.3e-42, Sum P(3) = 6.3e-42
Identities = 17/55 (30%), Positives = 28/55 (50%), Frame = +3
Query: 495 LVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX--XRVNSRKEVPP-KHKVFFPG 650
LVLRLRGGM I +++ S TI ++ ++ +PP + ++ F G
Sbjct: 97 LVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 151
Score = 57 (20.1 bits), Expect = 6.3e-42, Sum P(3) = 6.3e-42
Identities = 12/12 (100%), Positives = 12/12 (100%), Frame = +1
Query: 298 VKTLTGKTITLE 333
VKTLTGKTITLE
Sbjct: 81 VKTLTGKTITLE 92
Score = 57 (20.1 bits), Expect = 2.9e-06, Sum P(2) = 2.9e-06
Identities = 12/15 (80%), Positives = 12/15 (80%), Frame = +3
Query: 60 QXFVKXLTGKXITLE 104
Q FVK LTGK ITLE
Sbjct: 78 QIFVKTLTGKTITLE 92
>gi|10727281|gb|AAF47806.2| (AE003479) Ubi-p63E gene product [alt 2]
[Drosophila melanogaster] >gi|10727282|gb|AAG22241.1| (AE003479)
Ubi-p63E gene product [alt 3] [Drosophila melanogaster]
Length = 719
Frame 3 hits (HSPs): __________________________________________________
Frame 1 hits (HSPs): _________________________________ _______________
__________________________________________________
Database sequence: | | | | | | 719
0 150 300 450 600
Plus Strand HSPs:
Score = 407 (143.3 bits), Expect = 2.8e-36, P = 2.8e-36
Identities = 98/198 (49%), Positives = 123/198 (62%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I +++ S TI
Sbjct: 121 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 407 (143.3 bits), Expect = 2.8e-36, P = 2.8e-36
Identities = 98/198 (49%), Positives = 123/198 (62%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 78 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I +++ S TI
Sbjct: 197 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 407 (143.3 bits), Expect = 2.8e-36, P = 2.8e-36
Identities = 98/198 (49%), Positives = 123/198 (62%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 154 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I +++ S TI
Sbjct: 273 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 391 (137.6 bits), Expect = 1.5e-34, P = 1.5e-34
Identities = 91/156 (58%), Positives = 105/156 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 306 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 365
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDT-IENVKAKIQDKEGIPPDQQRLI 424
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPI 527
+ GK LE R L + LVLRLRGGM I
Sbjct: 425 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQI 459
Score = 362 (127.4 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 72/79 (91%), Positives = 74/79 (93%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 382 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 441
Query: 240 QKESTLHLVLRLRGGMQIF 296
QKESTLHLVLRLRGGMQIF
Sbjct: 442 QKESTLHLVLRLRGGMQIF 460
Score = 362 (127.4 bits), Expect = 1.0e-40, Sum P(3) = 1.0e-40
Identities = 72/79 (91%), Positives = 74/79 (93%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 512 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 571
Query: 240 QKESTLHLVLRLRGGMQIF 296
QKESTLHLVLRLRGGMQIF
Sbjct: 572 QKESTLHLVLRLRGGMQIF 590
Score = 348 (122.5 bits), Expect = 7.3e-30, P = 7.3e-30
Identities = 69/77 (89%), Positives = 72/77 (93%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 642 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 701
Query: 240 QKESTLHLVLRLRGGMQ 290
QKESTLHLVLRLRGG+Q
Sbjct: 702 QKESTLHLVLRLRGGIQ 718
Score = 224 (78.9 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 57/116 (49%), Positives = 71/116 (61%), Frame = +3
Query: 174 QQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTP 353
QQRLIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIF + + + T
Sbjct: 604 QQRLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDT- 662
Query: 354 LTTSRPRSRTRKESPPEPATSHPSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGM 521
+ + + + ++ PP+ + GK LE R L + LVLRLRGG+
Sbjct: 663 IENVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGI 717
Score = 216 (76.0 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
Identities = 56/115 (48%), Positives = 69/115 (60%), Frame = +3
Query: 183 LIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTT 362
LIFAGKQLEDGRTL+DYNIQKESTLHLVLRLRGGMQIF + + + T +
Sbjct: 477 LIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDT-IEN 535
Query: 363 SRPRSRTRKESPPEPATSHPSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPI 527
+ + + ++ PP+ + GK LE R L + LVLRLRGGM I
Sbjct: 536 VKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQI 589
Score = 106 (37.3 bits), Expect = 4.9e-40, Sum P(2) = 4.9e-40
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 515 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 570
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 571 IQKESTLH 578
Score = 106 (37.3 bits), Expect = 4.9e-40, Sum P(2) = 4.9e-40
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 645 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 700
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 701 IQKESTLH 708
Score = 106 (37.3 bits), Expect = 0.047, P = 0.046
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.047, P = 0.046
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.047, P = 0.046
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.047, P = 0.046
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.047, P = 0.046
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 106 (37.3 bits), Expect = 0.047, P = 0.046
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 385 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 440
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 441 IQKESTLH 448
Score = 75 (26.4 bits), Expect = 8.9e-37, Sum P(2) = 8.9e-37
Identities = 27/96 (28%), Positives = 43/96 (44%), Frame = +3
Query: 372 RSRTRKESPPEPATSHPSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPA 551
++ T K E ++S GK LE R L + LVLRLRGGM I
Sbjct: 462 KTLTGKTITLEISSSLIFAGKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGK 521
Query: 552 XYNPKIQNSQTIXX--XRVNSRKEVPP-KHKVFFPG 650
+++ S TI ++ ++ +PP + ++ F G
Sbjct: 522 TITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAG 557
Score = 74 (26.0 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 23/77 (29%), Positives = 35/77 (45%), Frame = +3
Query: 429 GKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX--XRV 602
GK LE R L + LVLRLRGGM I +++ S TI ++
Sbjct: 611 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 670
Query: 603 NSRKEVPP-KHKVFFPG 650
++ +PP + ++ F G
Sbjct: 671 QDKEGIPPDQQRLIFAG 687
Score = 68 (23.9 bits), Expect = 2.1e-40, Sum P(3) = 2.1e-40
Identities = 16/32 (50%), Positives = 21/32 (65%), Frame = +1
Query: 400 QNQQRLILRPESXLKXGAPSPNYNIXKESTLH 495
++QQRLI + L+ G +YNI KESTLH
Sbjct: 602 EHQQRLIFAGKQ-LEDGRTLSDYNIQKESTLH 632
Score = 68 (23.9 bits), Expect = 4.4e-21, Sum P(2) = 4.4e-21
Identities = 14/19 (73%), Positives = 15/19 (78%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESS 116
Q FVK LTGK ITLE+ SS
Sbjct: 458 QIFVKTLTGKTITLEISSS 476
Score = 60 (21.1 bits), Expect = 5.0e-41, Sum P(3) = 5.0e-41
Identities = 12/13 (92%), Positives = 13/13 (100%), Frame = +1
Query: 298 VKTLTGKTITLEV 336
VKTLTGKTITLE+
Sbjct: 461 VKTLTGKTITLEI 473
Score = 57 (20.1 bits), Expect = 1.0e-40, Sum P(3) = 1.0e-40
Identities = 12/12 (100%), Positives = 12/12 (100%), Frame = +1
Query: 298 VKTLTGKTITLE 333
VKTLTGKTITLE
Sbjct: 591 VKTLTGKTITLE 602
Score = 57 (20.1 bits), Expect = 0.00058, Sum P(2) = 0.00058
Identities = 12/15 (80%), Positives = 12/15 (80%), Frame = +3
Query: 60 QXFVKXLTGKXITLE 104
Q FVK LTGK ITLE
Sbjct: 588 QIFVKTLTGKTITLE 602
>gi|2118959|pir||S62909 ubiquitin precursor - Tetrahymena pyriformis (fragment)
>gi|773586|emb|CAA35579.1| (X17541) ubiquitin [Tetrahymena
pyriformis]
Length = 264
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____
Frame 1 hits (HSPs): _____________ _____________ _____________ ____
Annotated Domains: ___________________________________________
__________________________________________________
Database sequence: | | | | | | | 264
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology #label UBH2 77..152
Entrez domain: ubiquitin homology #label UBH3 153..228
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________
Plus Strand HSPs:
Score = 354 (124.6 bits), Expect = 2.3e-31, P = 2.3e-31
Identities = 81/156 (51%), Positives = 100/156 (64%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITL+V +D I+N+KAK QDKEGIP DQQRLIFAGKQLEDGRT++DYNI
Sbjct: 78 QVFVKTLTGKTITLDVAQTDNIENIKAKIQDKEGIPSDQQRLIFAGKQLEDGRTVSDYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQ+F + + + + + + + + + KE P
Sbjct: 138 QKESTLHLVLRLRGGMQVFVKTLTGKTITLEVNSS-DNIESIKSKIQD-KEGIPSDQQRL 195
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPI 527
GK LE R + + LVLRLRGGM +
Sbjct: 196 IFAGKQLEDGRNISDYNIQKESTLHLVLRLRGGMQV 231
Score = 349 (122.9 bits), Expect = 7.7e-31, P = 7.7e-31
Identities = 85/198 (42%), Positives = 112/198 (56%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK +TL+V S+D I+N+K K QDKEGIP DQQRLIFAGKQLE+GRT++DYNI
Sbjct: 2 QIFVKTLTGKTVTLDVASTDNIENIKQKIQDKEGIPSDQQRLIFAGKQLEEGRTVSDYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKEST+HLVLRLRGGMQ+F + + A T + KE P
Sbjct: 62 QKESTVHLVLRLRGGMQVFVKTLTGKTIT--LDVAQTDNIENIKAKIQDKEGIPSDQQRL 119
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
GK LE R + + LVLRLRGGM + ++ +S I
Sbjct: 120 IFAGKQLEDGRTVSDYNIQKESTLHLVLRLRGGMQVFVKTLTGKTITLEVNSSDNIESIK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +P + ++ F G
Sbjct: 180 SKIQDKEGIPSDQQRLIFAG 199
Score = 332 (116.9 bits), Expect = 6.9e-41, Sum P(3) = 6.9e-41
Identities = 64/79 (81%), Positives = 71/79 (89%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEV SSD I+++K+K QDKEGIP DQQRLIFAGKQLEDGR ++DYNI
Sbjct: 154 QVFVKTLTGKTITLEVNSSDNIESIKSKIQDKEGIPSDQQRLIFAGKQLEDGRNISDYNI 213
Query: 240 QKESTLHLVLRLRGGMQIF 296
QKESTLHLVLRLRGGMQ+F
Sbjct: 214 QKESTLHLVLRLRGGMQVF 232
Score = 134 (47.2 bits), Expect = 2.5e-06, P = 2.5e-06
Identities = 27/35 (77%), Positives = 30/35 (85%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGI 164
Q FVK LTGK ITL+V+SSD I+NVKAK QDKEGI
Sbjct: 230 QVFVKTLTGKTITLDVDSSDNIENVKAKIQDKEGI 264
Score = 105 (37.0 bits), Expect = 0.013, P = 0.013
Identities = 32/66 (48%), Positives = 43/66 (65%), Frame = +1
Query: 298 VKTLTGKTITLEVRKL*H--H*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITL+V + + + + + QD +G P +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLDVAQTDNIENIKAKIQDK-EGI--PSDQQRLIFAGKQ-LEDGRTVSDYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 104 (36.6 bits), Expect = 0.017, P = 0.017
Identities = 30/66 (45%), Positives = 38/66 (57%), Frame = +1
Query: 298 VKTLTGKTITLEVRKL*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYNIX 477
VKTLTGKTITLEV + + + + P +QQRLI + L+ G +YNI
Sbjct: 157 VKTLTGKTITLEVNSSDNIESIKSKIQDK-EGIPSDQQRLIFAGKQ-LEDGRNISDYNIQ 214
Query: 478 KESTLH 495
KESTLH
Sbjct: 215 KESTLH 220
Score = 103 (36.3 bits), Expect = 0.023, P = 0.022
Identities = 28/66 (42%), Positives = 37/66 (56%), Frame = +1
Query: 298 VKTLTGKTITLEVRKL*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYNIX 477
VKTLTGKT+TL+V + + Q P +QQRLI + L+ G +YNI
Sbjct: 5 VKTLTGKTVTLDVAST-DNIENIKQKIQDKEGIPSDQQRLIFAGKQ-LEEGRTVSDYNIQ 62
Query: 478 KESTLH 495
KEST+H
Sbjct: 63 KESTVH 68
Score = 81 (28.5 bits), Expect = 6.9e-41, Sum P(3) = 6.9e-41
Identities = 16/19 (84%), Positives = 18/19 (94%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGI 394
+SSD I+NVKAKIQDKEGI
Sbjct: 246 DSSDNIENVKAKIQDKEGI 264
Score = 58 (20.4 bits), Expect = 6.9e-41, Sum P(3) = 6.9e-41
Identities = 12/13 (92%), Positives = 13/13 (100%), Frame = +1
Query: 298 VKTLTGKTITLEV 336
VKTLTGKTITL+V
Sbjct: 233 VKTLTGKTITLDV 245
>gi|1321735|emb|CAA64326.1| (X94621) ubiquitin [Carabus alpestris]
Length = 139
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ________
Frame 1 hits (HSPs): ________________________ ______________________
__________________________________________________
Database sequence: | | | | 139
0 50 100
Plus Strand HSPs:
Score = 362 (127.4 bits), Expect = 7.5e-41, Sum P(2) = 7.5e-41
Identities = 72/79 (91%), Positives = 74/79 (93%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 240 QKESTLHLVLRLRGGMQIF 296
QKESTLHLVLRLRGGMQIF
Sbjct: 62 QKESTLHLVLRLRGGMQIF 80
Score = 278 (97.9 bits), Expect = 2.6e-23, P = 2.6e-23
Identities = 55/62 (88%), Positives = 57/62 (91%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 78 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Query: 240 QK 245
QK
Sbjct: 138 QK 139
Score = 106 (37.3 bits), Expect = 8.2e-05, P = 8.2e-05
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 98 (34.5 bits), Expect = 7.5e-41, Sum P(2) = 7.5e-41
Identities = 19/21 (90%), Positives = 20/21 (95%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
E SDTI+NVKAKIQDKEGIPP
Sbjct: 94 EPSDTIENVKAKIQDKEGIPP 114
Score = 80 (28.2 bits), Expect = 5.9e-39, Sum P(2) = 5.9e-39
Identities = 29/61 (47%), Positives = 37/61 (60%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 136
Query: 472 IXK 480
I K
Sbjct: 137 IQK 139
>gi|1353757|gb|AAB01784.1| (U43129) ubiquitin [Naegleria fowleri]
Length = 121
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): _________
Frame 1 hits (HSPs): ___________________________ _________________
__________________________________________________
Database sequence: | | | | 121
0 50 100
Plus Strand HSPs:
Score = 361 (127.1 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 71/79 (89%), Positives = 75/79 (94%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVES+DTI+NVK+K QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 1 QIFVKTLTGKTITLEVESNDTIENVKSKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 60
Query: 240 QKESTLHLVLRLRGGMQIF 296
QKESTLHLVLRLRGGMQIF
Sbjct: 61 QKESTLHLVLRLRGGMQIF 79
Score = 192 (67.6 bits), Expect = 3.4e-14, P = 3.4e-14
Identities = 38/45 (84%), Positives = 41/45 (91%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFA 194
Q FVK LTGK ITLEVES+DTI+NVK+K QDKEGIPPDQQRLIFA
Sbjct: 77 QIFVKTLTGKTITLEVESNDTIENVKSKIQDKEGIPPDQQRLIFA 121
Score = 107 (37.7 bits), Expect = 6.2e-05, P = 6.2e-05
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 4 VKTLTGKTITLEVESNDTIENVKSKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 59
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 60 IQKESTLH 67
Score = 97 (34.1 bits), Expect = 1.2e-40, Sum P(2) = 1.2e-40
Identities = 18/21 (85%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ES+DTI+NVK+KIQDKEGIPP
Sbjct: 93 ESNDTIENVKSKIQDKEGIPP 113
Score = 65 (22.9 bits), Expect = 2.8e-37, Sum P(2) = 2.8e-37
Identities = 23/41 (56%), Positives = 28/41 (68%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLI 420
VKTLTGKTITLEV + + + QD +G PP +QQRLI
Sbjct: 80 VKTLTGKTITLEVESNDTIENVKSKIQDK-EGI-PP-DQQRLI 119
>gi|3126967|gb|AAC16012.1| (AF061807) polyubiquitin [Elaeagnus umbellata]
Length = 458
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ___ ___ ___ ___
Frame 1 hits (HSPs): ________________ _______ ________________________
__________________________________________________
Database sequence: | | | || 458
0 150 300 450
Plus Strand HSPs:
Score = 425 (149.6 bits), Expect = 6.8e-39, P = 6.8e-39
Identities = 101/198 (51%), Positives = 126/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + ++L + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTIT-LEVESLDTIDNVKAQIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 407
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 408 AKIQDKEGIPPDQQRLIFAG 427
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 416 (146.4 bits), Expect = 6.1e-38, P = 6.1e-38
Identities = 100/198 (50%), Positives = 124/198 (62%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXXXR 599
+ GK LE R L + LVLRLRGGM I ++++ TI +
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESLDTIDNVK 331
Query: 600 --VNSRKEVPP-KHKVFFPG 650
+ ++ +PP + ++ F G
Sbjct: 332 AQIQDKEGIPPDQQRLIFAG 351
Score = 386 (135.9 bits), Expect = 9.3e-35, P = 9.3e-35
Identities = 90/153 (58%), Positives = 103/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVES DTIDNVKA+ QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 306 QIFVKTLTGKTITLEVESLDTIDNVKAQIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 424
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 425 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
Score = 115 (40.5 bits), Expect = 0.0022, P = 0.0022
Identities = 33/66 (50%), Positives = 39/66 (59%), Frame = +1
Query: 298 VKTLTGKTITLEVRKL*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYNIX 477
VKTLTGKTITLEV L + Q + PP +QQRLI + L+ G +YNI
Sbjct: 309 VKTLTGKTITLEVESLDTIDNVKAQIQDKEGIPP-DQQRLIFAGKQ-LEDGRTLADYNIQ 366
Query: 478 KESTLH 495
KESTLH
Sbjct: 367 KESTLH 372
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 398 ESSDTIDNVKAKIQDKEGIPP 418
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 385 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 440
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 441 IQKESTLH 448
>gi|3789942|gb|AAC67552.1| (AF093505) polyubiquitin [Saccharum hybrid cultivar
H32-8560]
Length = 381
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___ ___
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
__________________________________________________
Database sequence: | | | | 381
0 150 300
Plus Strand HSPs:
Score = 425 (149.6 bits), Expect = 6.8e-39, P = 6.8e-39
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRXI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 415 (146.1 bits), Expect = 7.8e-38, P = 7.8e-38
Identities = 100/198 (50%), Positives = 123/198 (62%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLA YNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAXYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRXI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLAXYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 384 (135.2 bits), Expect = 1.5e-34, P = 1.5e-34
Identities = 90/153 (58%), Positives = 102/153 (66%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQR IFAGKQLEDGRTLA YNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRXIFAGKQLEDGRTLAXYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 104 (36.6 bits), Expect = 0.034, P = 0.033
Identities = 34/66 (51%), Positives = 41/66 (62%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLAXYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 101 (35.6 bits), Expect = 0.076, P = 0.073
Identities = 33/66 (50%), Positives = 41/66 (62%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQR I + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRXIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 99 (34.8 bits), Expect = 0.13, P = 0.12
Identities = 33/66 (50%), Positives = 40/66 (60%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQR I + L+ G YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRXIFAGKQ-LEDGRTLAXYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
>gi|1805696|emb|CAA71664.1| (Y10639) polyubiquitin [Ceratitis capitata]
Length = 134
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): _________ ________
Frame 1 hits (HSPs): _______________________ _______________________
__________________________________________________
Database sequence: | | | | 134
0 50 100
Plus Strand HSPs:
Score = 343 (120.7 bits), Expect = 7.5e-39, Sum P(2) = 7.5e-39
Identities = 68/73 (93%), Positives = 70/73 (95%), Frame = +3
Query: 78 LTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTL 257
LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNIQKESTL
Sbjct: 1 LTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNIQKESTL 60
Query: 258 HLVLRLRGGMQIF 296
HLVLRLRGGMQIF
Sbjct: 61 HLVLRLRGGMQIF 73
Score = 287 (101.0 bits), Expect = 2.9e-24, P = 2.9e-24
Identities = 57/64 (89%), Positives = 59/64 (92%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVE SDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 71 QIFVKTLTGKTITLEVEPSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 130
Query: 240 QKES 251
QKES
Sbjct: 131 QKES 134
Score = 98 (34.5 bits), Expect = 7.5e-39, Sum P(2) = 7.5e-39
Identities = 19/21 (90%), Positives = 20/21 (95%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
E SDTI+NVKAKIQDKEGIPP
Sbjct: 87 EPSDTIENVKAKIQDKEGIPP 107
Score = 98 (34.5 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 19/21 (90%), Positives = 20/21 (95%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
E SDTI+NVKAKIQDKEGIPP
Sbjct: 11 EPSDTIENVKAKIQDKEGIPP 31
Score = 92 (32.4 bits), Expect = 0.029, P = 0.029
Identities = 31/63 (49%), Positives = 39/63 (61%), Frame = +1
Query: 307 LTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYNIXK 480
LTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YNI K
Sbjct: 1 LTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYNIQK 56
Query: 481 ESTLH 495
ESTLH
Sbjct: 57 ESTLH 61
Score = 89 (31.3 bits), Expect = 6.6e-38, Sum P(2) = 6.6e-38
Identities = 31/63 (49%), Positives = 39/63 (61%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 74 VKTLTGKTITLEVEPSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 129
Query: 472 IXKES 486
I KES
Sbjct: 130 IQKES 134
Score = 74 (26.0 bits), Expect = 4.0e-10, Sum P(2) = 4.0e-10
Identities = 23/77 (29%), Positives = 35/77 (45%), Frame = +3
Query: 429 GKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX--XRV 602
GK LE R L + LVLRLRGGM I +++ S TI ++
Sbjct: 40 GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVEPSDTIENVKAKI 99
Query: 603 NSRKEVPP-KHKVFFPG 650
++ +PP + ++ F G
Sbjct: 100 QDKEGIPPDQQRLIFAG 116
>gi|100934|pir||S20925 polyubiquitin - maize >gi|422037|pir||S20926 ubiquitin
precursor Ubi-2 - maize >gi|248337|gb|AAB21993.1| (S94464)
polyubiquitin(ubiquitin) [maize, Peptide, 533 aa] [Zea mays]
>gi|248339|gb|AAB21994.1| (S94466) polyubiquitin(ubiquitin) [maize,
Peptide, 533 aa] [Zea mays]
Length = 533
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___ __ ___ ___
Frame 1 hits (HSPs): ___________________________________ ______ _______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 533
0 150 300 450
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology #label UBH2 77..152
Entrez domain: ubiquitin homology #label UBH3 153..228
Entrez domain: ubiquitin homology #label UBH4 229..304
Entrez domain: ubiquitin homology #label UBH5 305..380
Entrez domain: ubiquitin homology #label UBH6 381..456
Entrez domain: ubiquitin homology #label UBH 457..532
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 255..280
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 331..356
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 407..432
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 483..508
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 197 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 407
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 408 AKIQDKEGIPPDQQRLIFAG 427
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 424
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 425 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 483
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 484 AKIQDKEGIPPDQQRLIFAG 503
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 441
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 442 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 500
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 501 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 532
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 398 ESSDTIDNVKAKIQDKEGIPP 418
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 474 ESSDTIDNVKAKIQDKEGIPP 494
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 385 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 440
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 441 IQKESTLH 448
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 461 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 516
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 517 IQKESTLH 524
>gi|4115337|gb|AAD03343.1| (L81141) ubiquitin [Pisum sativum]
Length = 457
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ___ ___ ___ ___ ___
Frame 1 hits (HSPs): ________________ _______ ________________ _______
__________________________________________________
Database sequence: | | | || 457
0 150 300 450
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 407
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 408 AKIQDKEGIPPDQQRLIFAG 427
Score = 397 (139.8 bits), Expect = 6.3e-36, P = 6.3e-36
Identities = 92/154 (59%), Positives = 105/154 (68%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 424
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGM 521
+ GK LE R L + LVLRLRGG+
Sbjct: 425 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGI 457
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 398 ESSDTIDNVKAKIQDKEGIPP 418
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 385 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 440
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 441 IQKESTLH 448
>gi|70644|pir||UQFS ubiquitin precursor - common sunflower (fragment)
Length = 410
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ____ ___ ___
Frame 1 hits (HSPs): ________ ________ __________________ ________
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | 410
0 150 300
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 30..105
Entrez domain: ubiquitin homology #label UBH2 106..181
Entrez domain: ubiquitin homology #label UBH3 182..257
Entrez domain: ubiquitin homology #label UBH4 258..333
Entrez domain: ubiquitin homology #label UBH5 334..409
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 132..157
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 208..233
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 284..309
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 360..385
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 56..81
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 31 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 90
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 91 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 149
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 150 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 208
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 209 AKIQDKEGIPPDQQRLIFAG 228
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 107 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 166
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 167 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 225
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 226 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 284
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 285 AKIQDKEGIPPDQQRLIFAG 304
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 183 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 242
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 243 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 301
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 302 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 360
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 361 AKIQDKEGIPPDQQRLIFAG 380
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 259 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 318
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 319 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 377
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 378 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 409
Score = 215 (75.7 bits), Expect = 4.3e-16, P = 4.3e-16
Identities = 59/152 (38%), Positives = 83/152 (54%), Frame = +3
Query: 198 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRS 377
KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF + + + T + + +
Sbjct: 1 KQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKI 59
Query: 378 RTRKESPPEPATSHPSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXY 557
+ ++ PP+ + GK LE R L + LVLRLRGGM I
Sbjct: 60 QDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTI 118
Query: 558 NPKIQNSQTIXX--XRVNSRKEVPP-KHKVFFPG 650
++++S TI ++ ++ +PP + ++ F G
Sbjct: 119 TLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 152
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 47 ESSDTIDNVKAKIQDKEGIPP 67
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 123 ESSDTIDNVKAKIQDKEGIPP 143
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 199 ESSDTIDNVKAKIQDKEGIPP 219
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 275 ESSDTIDNVKAKIQDKEGIPP 295
Score = 106 (37.3 bits), Expect = 0.022, P = 0.022
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 34 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 89
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 90 IQKESTLH 97
Score = 106 (37.3 bits), Expect = 0.022, P = 0.022
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 110 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 165
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 166 IQKESTLH 173
Score = 106 (37.3 bits), Expect = 0.022, P = 0.022
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 186 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 241
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 242 IQKESTLH 249
Score = 106 (37.3 bits), Expect = 0.022, P = 0.022
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 262 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 317
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 318 IQKESTLH 325
Score = 106 (37.3 bits), Expect = 0.022, P = 0.022
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 338 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 393
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 394 IQKESTLH 401
>gi|100524|pir||S17435 polyubiquitin 6 - common sunflower
>gi|18824|emb|CAA40324.1| (X57004) hexaubiquitin protein
[Helianthus annuus] >gi|1204096|emb|CAA40325.1| (X57005)
hexaubiquitin protein [Helianthus annuus]
Length = 457
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ___ ___ ___ ___ ___
Frame 1 hits (HSPs): ________________ _______ ________________ _______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | || 457
0 150 300 450
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology #label UBH2 77..152
Entrez domain: ubiquitin homology #label UBH3 153..228
Entrez domain: ubiquitin homology #label UBH4 229..304
Entrez domain: ubiquitin homology #label UBH5 305..380
Entrez domain: ubiquitin homology #label UBH6 381..456
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 255..280
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 331..356
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 407..432
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 407
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 408 AKIQDKEGIPPDQQRLIFAG 427
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 424
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 425 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 398 ESSDTIDNVKAKIQDKEGIPP 418
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 385 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 440
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 441 IQKESTLH 448
>gi|170352|gb|AAA34123.1| (M74101) hexameric polyubiquitin [Nicotiana
sylvestris] >gi|870792|gb|AAA68878.1| (L05361) polyubiquitin
[Arabidopsis thaliana] >gi|4115333|gb|AAD03341.1| (L81139)
ubiquitin [Pisum sativum] >gi|4115335|gb|AAD03342.1| (L81140)
ubiquitin [Pisum sativum]
Length = 457
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ___ ___ ___ ___ ___
Frame 1 hits (HSPs): ________________ _______ ________________ _______
__________________________________________________
Database sequence: | | | || 457
0 150 300 450
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 407
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 408 AKIQDKEGIPPDQQRLIFAG 427
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 424
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 425 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 398 ESSDTIDNVKAKIQDKEGIPP 418
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 385 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 440
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 441 IQKESTLH 448
>gi|418854|pir||S30151 polyubiquitin 6 - parsley >gi|288112|emb|CAA45621.1|
(X64344) polyubiquitin [Petroselinum crispum]
>gi|288114|emb|CAA45622.1| (X64345) polyubiquitin [Petroselinum
crispum]
Length = 458
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ___ ___ ___ ___ ___
Frame 1 hits (HSPs): ________________ _______ ________________________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | || 458
0 150 300 450
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology #label UBH2 77..152
Entrez domain: ubiquitin homology #label UBH3 153..228
Entrez domain: ubiquitin homology #label UBH4 229..304
Entrez domain: ubiquitin homology #label UBH5 305..380
Entrez domain: ubiquitin homology #label UBH6 381..456
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 255..280
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 331..356
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 407..432
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 407
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 408 AKIQDKEGIPPDQQRLIFAG 427
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 424
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 425 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 398 ESSDTIDNVKAKIQDKEGIPP 418
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 385 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 440
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 441 IQKESTLH 448
>gi|481477|pir||S38669 polyubiquitin 6 - rice >gi|416038|emb|CAA53665.1|
(X76064) polyubiquitin [Oryza sativa] >gi|1574944|gb|AAC49806.1|
(U37687) polyubiquitin [Oryza sativa]
>gi|6013289|gb|AAF01315.1|AF184279_1 (AF184279) polyubiquitin
[Oryza sativa] >gi|6013291|gb|AAF01316.1|AF184280_1 (AF184280)
polyubiquitin [Oryza sativa]
Length = 457
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ___ ___ ___ ___ ___
Frame 1 hits (HSPs): ________________ _______ ________________ _______
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | || 457
0 150 300 450
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology #label UBH2 77..152
Entrez domain: ubiquitin homology #label UBH3 153..228
Entrez domain: ubiquitin homology #label UBH4 229..304
Entrez domain: ubiquitin homology #label UBH5 305..380
Entrez domain: ubiquitin homology #label UBH6 381..456
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 255..280
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 331..356
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 407..432
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 407
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 408 AKIQDKEGIPPDQQRLIFAG 427
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 424
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 425 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 398 ESSDTIDNVKAKIQDKEGIPP 418
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 385 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 440
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 441 IQKESTLH 448
>gi|2760347|gb|AAB95251.1| (U84968) ubiquitin [Arabidopsis thaliana]
Length = 456
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ___ ___ ____ ___ ___
Frame 1 hits (HSPs): ________________ ________________________ ________
__________________________________________________
Database sequence: | | | || 456
0 150 300 450
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 407
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 408 AKIQDKEGIPPDQQRLIFAG 427
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 424
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 425 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 456
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 107 (37.7 bits), Expect = 0.018, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 398 ESSDTIDNVKAKIQDKEGIPP 418
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 106 (37.3 bits), Expect = 0.026, P = 0.025
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 385 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 440
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 441 IQKESTLH 448
>gi|421929|pir||S34285 polyubiquitin - tomato >gi|312160|emb|CAA51679.1|
(X73156) ubiquitin [Lycopersicon esculentum]
Length = 534
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ __ ___ ___
Frame 1 hits (HSPs): __________________________________________ ______
Annotated Domains: ___ ___ ____ ____ ____ ___ ___
__________________________________________________
Database sequence: | | | | | 534
0 150 300 450
__________________
Annotated Domains:
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 255..280
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 331..356
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 407..432
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 483..508
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 366 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 424
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 425 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 483
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 484 AKIQDKEGIPPDQQRLIFAG 503
Score = 422 (148.6 bits), Expect = 1.4e-38, P = 1.4e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTRKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 441
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 442 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 500
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 501 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 532
Score = 111 (39.1 bits), Expect = 0.0083, P = 0.0082
Identities = 40/93 (43%), Positives = 52/93 (55%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLHSSSVSVVACQXFL*NPXRXNITLKFKT 576
I KESTLH Q F+ R ITL+ ++
Sbjct: 213 IQKESTLHLVLRLRGGMQIFVKTLTRKTITLEVES 247
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 398 ESSDTIDNVKAKIQDKEGIPP 418
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 474 ESSDTIDNVKAKIQDKEGIPP 494
Score = 106 (37.3 bits), Expect = 0.032, P = 0.032
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.032, P = 0.032
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.032, P = 0.032
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 106 (37.3 bits), Expect = 0.032, P = 0.032
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 385 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 440
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 441 IQKESTLH 448
Score = 106 (37.3 bits), Expect = 0.032, P = 0.032
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 461 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 516
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 517 IQKESTLH 524
Score = 98 (34.5 bits), Expect = 0.27, P = 0.24
Identities = 33/66 (50%), Positives = 41/66 (62%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLT KTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTRKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
>gi|902584|gb|AAC49013.1| (U29159) polyubiquitin containing 7 ubiquitin
monomers [Zea mays]
Length = 533
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___ __ ___ ___
Frame 1 hits (HSPs): ___________________________________ ______ _______
__________________________________________________
Database sequence: | | | | | 533
0 150 300 450
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 365
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLV+RLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 366 QKESTLHLVVRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 424
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 425 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 483
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 484 AKIQDKEGIPPDQQRLIFAG 503
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 382 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 441
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 442 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 500
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 501 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 532
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 398 ESSDTIDNVKAKIQDKEGIPP 418
Score = 107 (37.7 bits), Expect = 0.023, P = 0.022
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 474 ESSDTIDNVKAKIQDKEGIPP 494
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 385 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 440
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 441 IQKESTLH 448
Score = 106 (37.3 bits), Expect = 0.032, P = 0.031
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 461 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 516
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 517 IQKESTLH 524
>gi|899608|gb|AAC49025.1| (U29158) polyubiquitin [Zea mays]
Length = 381
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
__________________________________________________
Database sequence: | | | | 381
0 150 300
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 197 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LV+RLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVVRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 393 (138.3 bits), Expect = 1.7e-35, P = 1.7e-35
Identities = 91/153 (59%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLV+RLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVVRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
>gi|170354|gb|AAA34124.1| (M74156) pentameric polyubiquitin [Nicotiana
sylvestris]
Length = 377
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ____ ____ ____ ___
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
__________________________________________________
Database sequence: | | | | 377
0 150 300
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 74 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 133
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 134 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 192
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 193 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 251
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 252 AKIQDKEGIPPDQQRLIFAG 271
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 150 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 209
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 210 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 268
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 269 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 327
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 328 AKIQDKEGIPPDQQRLIFAG 347
Score = 413 (145.4 bits), Expect = 1.3e-37, P = 1.3e-37
Identities = 99/195 (50%), Positives = 123/195 (63%), Frame = +3
Query: 69 VKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 248
VK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE
Sbjct: 1 VKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKE 60
Query: 249 STLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSHPSP 428
STLHLVLRLRGGMQIF + + + T + + + + ++ PP+ +
Sbjct: 61 STLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFA- 118
Query: 429 GKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX--XRV 602
GK LE R L + LVLRLRGGM I ++++S TI ++
Sbjct: 119 GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKI 178
Query: 603 NSRKEVPP-KHKVFFPG 650
++ +PP + ++ F G
Sbjct: 179 QDKEGIPPDQQRLIFAG 195
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 226 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 285
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 286 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 344
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 345 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 376
Score = 107 (37.7 bits), Expect = 0.013, P = 0.013
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 14 ESSDTIDNVKAKIQDKEGIPP 34
Score = 107 (37.7 bits), Expect = 0.013, P = 0.013
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 90 ESSDTIDNVKAKIQDKEGIPP 110
Score = 107 (37.7 bits), Expect = 0.013, P = 0.013
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 166 ESSDTIDNVKAKIQDKEGIPP 186
Score = 107 (37.7 bits), Expect = 0.013, P = 0.013
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 242 ESSDTIDNVKAKIQDKEGIPP 262
Score = 107 (37.7 bits), Expect = 0.013, P = 0.013
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 318 ESSDTIDNVKAKIQDKEGIPP 338
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 1 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 56
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 57 IQKESTLH 64
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 77 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 132
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 133 IQKESTLH 140
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 153 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 208
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 209 IQKESTLH 216
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 229 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 284
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 285 IQKESTLH 292
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 305 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 360
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 361 IQKESTLH 368
>gi|7267292|emb|CAB81074.1| (AL161503) polyubiquitin (ubq10) [Arabidopsis
thaliana]
Length = 464
Frame 3 hits (HSPs): _____________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___ ___ _______
Frame 1 hits (HSPs): ________________________ _______ _______ __ ______
__________________________________________________
Database sequence: | | | | | 464
0 150 300 450
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 197 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 410 (144.3 bits), Expect = 2.7e-37, P = 2.7e-37
Identities = 100/187 (53%), Positives = 118/187 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXXXR 599
+ GK LE R L + LVLRLRGGM I ++++S TI +
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 407
Query: 600 VNSR-KEV 620
+ KEV
Sbjct: 408 AKIQDKEV 415
Score = 107 (37.7 bits), Expect = 0.019, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.019, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.019, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.019, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.019, P = 0.018
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 106 (37.3 bits), Expect = 0.026, P = 0.026
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.026, P = 0.026
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.026, P = 0.026
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.026, P = 0.026
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.026, P = 0.026
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 103 (36.3 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 30/53 (56%), Positives = 34/53 (64%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPPRTSNVSSFARKAT*RXAPPPRITTSXRNQPFT 496
ESSDTIDNVKAKIQDKE + RTS+VSS + P TTS R+ FT
Sbjct: 398 ESSDTIDNVKAKIQDKE-VFLRTSSVSSSLESSLRMDVLWPT-TTSRRSLLFT 448
Score = 98 (34.5 bits), Expect = 0.23, P = 0.20
Identities = 29/47 (61%), Positives = 31/47 (65%), Frame = +1
Query: 157 KE-FPRISNVSSSPESSSRTAVPSPTTTSRRSQPFTLSFVSVVACRS 294
KE F R S+VSSS ESS R V PTTTSRRS FT S V VV +S
Sbjct: 413 KEVFLRTSSVSSSLESSLRMDVLWPTTTSRRSLLFTWSCVFVVVSKS 459
Score = 61 (21.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 13/13 (100%), Positives = 13/13 (100%), Frame = +1
Query: 298 VKTLTGKTITLEV 336
VKTLTGKTITLEV
Sbjct: 385 VKTLTGKTITLEV 397
>gi|602076|emb|CAA54603.1| (X77456) pentameric polyubiquitin [Nicotiana
tabacum]
Length = 346
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ____ ____ ____ ____
Frame 1 hits (HSPs): __________ __________ __________ __________ ___
__________________________________________________
Database sequence: | | | | 346
0 150 300
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 197 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 410 (144.3 bits), Expect = 2.7e-37, P = 2.7e-37
Identities = 98/188 (52%), Positives = 119/188 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVP 623
++ ++ +P
Sbjct: 332 AKIQDKEGIP 341
Score = 107 (37.7 bits), Expect = 0.012, P = 0.012
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.012, P = 0.012
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.012, P = 0.012
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.012, P = 0.012
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 106 (37.3 bits), Expect = 0.017, P = 0.016
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.017, P = 0.016
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.017, P = 0.016
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.017, P = 0.016
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 100 (35.2 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 20/20 (100%), Positives = 20/20 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIP 397
ESSDTIDNVKAKIQDKEGIP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIP 341
Score = 61 (21.5 bits), Expect = 0.00017, Sum P(2) = 0.00017
Identities = 13/13 (100%), Positives = 13/13 (100%), Frame = +1
Query: 298 VKTLTGKTITLEV 336
VKTLTGKTITLEV
Sbjct: 309 VKTLTGKTITLEV 321
>gi|100525|pir||S17436 ubiquitin precursor UbB2 - common sunflower (fragment)
>gi|18803|emb|CAA40323.1| (X57003) polyubiquitin protein
[Helianthus annuus]
Length = 334
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ____ ____ ____ __
Frame 1 hits (HSPs): ______________________ __________ ___________ __
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 334
0 150 300
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology #label UBH2 77..152
Entrez domain: ubiquitin homology #label UBH3 153..228
Entrez domain: ubiquitin homology #label UBH4 229..304
Entrez domain: ubiquitin homology (fragment) #l 305..334
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 255..280
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 197 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 407 (143.3 bits), Expect = 5.5e-37, P = 5.5e-37
Identities = 97/176 (55%), Positives = 113/176 (64%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTI 587
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 327
Score = 119 (41.9 bits), Expect = 0.00040, P = 0.00040
Identities = 25/28 (89%), Positives = 25/28 (89%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAK 143
Q FVK LTGK ITLEVESSDTIDNVKAK
Sbjct: 306 QIFVKTLTGKTITLEVESSDTIDNVKAK 333
Score = 107 (37.7 bits), Expect = 0.011, P = 0.011
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.011, P = 0.011
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.011, P = 0.011
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.011, P = 0.011
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 106 (37.3 bits), Expect = 0.016, P = 0.016
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.016, P = 0.016
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.016, P = 0.016
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.016, P = 0.016
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 62 (21.8 bits), Expect = 4.7, Sum P(2) = 0.99
Identities = 13/13 (100%), Positives = 13/13 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKI 376
ESSDTIDNVKAKI
Sbjct: 322 ESSDTIDNVKAKI 334
Score = 61 (21.5 bits), Expect = 4.7, Sum P(2) = 0.99
Identities = 13/13 (100%), Positives = 13/13 (100%), Frame = +1
Query: 298 VKTLTGKTITLEV 336
VKTLTGKTITLEV
Sbjct: 309 VKTLTGKTITLEV 321
>gi|7488781|pir||T12035 polyubiquitin 4.4 - kidney bean
>gi|1684855|gb|AAB36545.1| (U77939) ubiquitin-like protein
[Phaseolus vulgaris]
Length = 407
Frame 3 hits (HSPs): _____________________________________________
Frame 2 hits (HSPs): ____ ____ ___ ____
Frame 1 hits (HSPs): ________ __________________ ________
__________________________________________________
Database sequence: | | | | 407
0 150 300
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 104 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 163
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 164 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 222
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 223 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 281
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 282 AKIQDKEGIPPDQQRLIFAG 301
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 180 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 240 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 298
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 299 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 357
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 358 AKIQDKEGIPPDQQRLIFAG 377
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 256 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 315
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 316 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 374
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 375 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 406
Score = 218 (76.7 bits), Expect = 2.0e-16, P = 2.0e-16
Identities = 67/183 (36%), Positives = 96/183 (52%), Frame = +3
Query: 102 EVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRG 281
+V S ++ V A+ D + Q FA KQLEDGRTLADYNIQKESTLHLVLRLRG
Sbjct: 45 QVFVSHMVEGVDARLLDVQKGHKGAQ--CFA-KQLEDGRTLADYNIQKESTLHLVLRLRG 101
Query: 282 GMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSHPSPGKXLEXXRPLP 461
GMQIF + + + T + + + + ++ PP+ + GK LE R L
Sbjct: 102 GMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLA 159
Query: 462 ELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX--XRVNSRKEVPP-KH 632
+ LVLRLRGGM I ++++S TI ++ ++ +PP +
Sbjct: 160 DYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQ 219
Query: 633 KVFFPG 650
++ F G
Sbjct: 220 RLIFAG 225
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 120 ESSDTIDNVKAKIQDKEGIPP 140
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 196 ESSDTIDNVKAKIQDKEGIPP 216
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 272 ESSDTIDNVKAKIQDKEGIPP 292
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 348 ESSDTIDNVKAKIQDKEGIPP 368
Score = 106 (37.3 bits), Expect = 0.022, P = 0.021
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 107 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 162
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 163 IQKESTLH 170
Score = 106 (37.3 bits), Expect = 0.022, P = 0.021
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 183 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 238
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 239 IQKESTLH 246
Score = 106 (37.3 bits), Expect = 0.022, P = 0.021
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 259 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 314
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 315 IQKESTLH 322
Score = 106 (37.3 bits), Expect = 0.022, P = 0.021
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 335 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 390
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 391 IQKESTLH 398
>gi|70642|pir||UQMUM polyubiquitin 5 - Arabidopsis thaliana
>gi|17678|emb|CAA31331.1| (X12853) polyubiquitin (AA 1 - 382)
[Arabidopsis thaliana] >gi|987519|gb|AAB53929.1| (U33014)
polyubiquitin [Arabidopsis thaliana] >gi|226499|prf||1515347A
poly-ubiquitin [Arabidopsis thaliana]
Length = 382
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___ ___
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 382
0 150 300
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology #label UBH2 77..152
Entrez domain: ubiquitin homology #label UBH3 153..228
Entrez domain: ubiquitin homology #label UBH4 229..304
Entrez domain: ubiquitin homology #label UBH5 305..380
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 255..280
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 331..356
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 106 (37.3 bits), Expect = 0.020, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.020, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.020, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.020, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.020, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
>gi|70645|pir||UQPM polyubiquitin 5 - garden pea >gi|20589|emb|CAA34886.1|
(X17020) polyubiquitin (AA 1-381) [Pisum sativum]
>gi|4115339|gb|AAD03344.1| (L81142) ubiquitin [Pisum sativum]
>gi|226707|prf||1603402A poly-ubiquitin [Pisum sativum]
Length = 381
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___ ___
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 381
0 150 300
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology #label UBH2 77..152
Entrez domain: ubiquitin homology #label UBH3 153..228
Entrez domain: ubiquitin homology #label UBH4 229..304
Entrez domain: ubiquitin homology #label UBH5 305..380
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 255..280
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 331..356
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
>gi|902586|gb|AAC49014.1| (U29162) ubiquitin [Zea mays]
Length = 381
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___ ___
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
__________________________________________________
Database sequence: | | | | 381
0 150 300
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
>gi|4809266|gb|AAD30173.1|AF148448_1 (AF148448) polyubiquitin [Sporobolus
stapfianus]
Length = 381
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___ ___
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
__________________________________________________
Database sequence: | | | | 381
0 150 300
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
>gi|320608|pir||S28426 polyubiquitin 4 - wild oat >gi|15989|emb|CAA49200.1|
(X69422) tetraubiquitin [Avena fatua] >gi|777758|gb|AAC37466.1|
(L41658) polyubiquitin [Saccharum sp.]
Length = 305
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): _____ ____ ____ ____
Frame 1 hits (HSPs): ___________ ___________ ___________ ___________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | || 305
0 50 100 150 200 250 300
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology #label UBH2 77..152
Entrez domain: ubiquitin homology #label UBH3 153..228
Entrez domain: ubiquitin homology #label UBH4 229..304
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 255..280
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 197 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
>gi|1076708|pir||S49332 polyubiquitin 4 - common sunflower
>gi|303901|dbj|BAA03764.1| (D16248) ubiquitin [Glycine max]
>gi|456714|dbj|BAA05670.1| (D28123) Ubiquitin [Glycine max]
>gi|556688|emb|CAA84440.1| (Z34988) seed tetraubiquitin [Helianthus
annuus] >gi|994785|dbj|BAA05085.1| (D26092) Ubiquitin [Glycine max]
>gi|4263514|gb|AAD15340.1| (AC004044) putative polyubiquitin
[Arabidopsis thaliana] >gi|7269774|emb|CAB77774.1| (AL161495)
polyubiquitin [Arabidopsis thaliana] >gi|1096513|prf||2111434A
tetraubiquitin [Helianthus annuus]
Length = 305
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): _____ ____ ____ ____
Frame 1 hits (HSPs): ___________ ___________ ___________ ___________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | || 305
0 50 100 150 200 250 300
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology #label UBH2 77..152
Entrez domain: ubiquitin homology #label UBH3 153..228
Entrez domain: ubiquitin homology #label UBH4 229..304
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 255..280
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 197 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
>gi|11275233|pir||T48345 polyubiquitin (ubq3) - Arabidopsis thaliana
>gi|7413601|emb|CAB86091.1| (AL163002) polyubiquitin (ubq3)
[Arabidopsis thaliana] >gi|9757775|dbj|BAB08384.1| (AB005240)
polyubiquitin [Arabidopsis thaliana]
Length = 306
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): _____ ____ ____ ____
Frame 1 hits (HSPs): ___________ ___________ ___________ ____________
__________________________________________________
Database sequence: | | | | | | | | 306
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 197 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0093
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0093
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0093
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0093
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
>gi|2760349|gb|AAB95252.1| (U84969) ubiquitin [Arabidopsis thaliana]
Length = 380
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___ ___
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
__________________________________________________
Database sequence: | | | | 380
0 150 300
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 422 (148.6 bits), Expect = 1.4e-38, P = 1.4e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQWLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 349 FA-GKQLEDGRTLADYDIQKESTLHLVLRLRGG 380
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 101 (35.6 bits), Expect = 0.075, P = 0.072
Identities = 33/66 (50%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +Y+
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYD 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 98 (34.5 bits), Expect = 0.17, P = 0.15
Identities = 33/66 (50%), Positives = 41/66 (62%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQ LI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQWLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
>gi|1800281|gb|AAB68045.1| (U82086) polyubiquitin [Fragaria x ananassa]
Length = 381
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
__________________________________________________
Database sequence: | | | | 381
0 150 300
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 421 (148.2 bits), Expect = 1.8e-38, P = 1.8e-38
Identities = 101/198 (51%), Positives = 124/198 (62%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIXDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 104 (36.6 bits), Expect = 0.034, P = 0.033
Identities = 31/66 (46%), Positives = 38/66 (57%), Frame = +1
Query: 298 VKTLTGKTITLEVRKL*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYNIX 477
VKTLTGKTITLEV + + + PP +QQRLI + L+ G +YNI
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIXDKEGIPP-DQQRLIFAGKQ-LEDGRTLADYNIQ 138
Query: 478 KESTLH 495
KESTLH
Sbjct: 139 KESTLH 144
>gi|2760345|gb|AAB95250.1| (U84967) ubiquitin [Arabidopsis thaliana]
Length = 304
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): _____ ____ ____
Frame 1 hits (HSPs): ____________ ___________ ____________ ___________
__________________________________________________
Database sequence: | | | | | | || 304
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQRESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
Q+ESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QRESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 197 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 304
Score = 107 (37.7 bits), Expect = 0.0092, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.0092, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.0092, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 103 (36.3 bits), Expect = 0.030, P = 0.029
Identities = 33/66 (50%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I +ESTLH
Sbjct: 137 IQRESTLH 144
>gi|100490|pir||S25164 polyubiquitin - garden snapdragon (fragment)
>gi|16071|emb|CAA48140.1| (X67957) ubiquitin [Antirrhinum majus]
Length = 296
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ____ ____ _____
Frame 1 hits (HSPs): __________ ____________ ____________ ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 296
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez domain: ubiquitin homology (fragment) #l 1..67
Entrez domain: ubiquitin homology #label UBH2 68..143
Entrez domain: ubiquitin homology #label UBH3 144..219
Entrez domain: ubiquitin homology #label UBH4 220..295
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 170..195
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 18..43
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 246..271
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 94..119
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 69 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 128
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 129 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 187
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 188 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 246
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 247 AKIQDKEGIPPDQQRLIFAG 266
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 145 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 204
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 205 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 263
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 264 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 295
Score = 395 (139.0 bits), Expect = 1.0e-35, P = 1.0e-35
Identities = 95/190 (50%), Positives = 119/190 (62%), Frame = +3
Query: 84 GKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 263
GK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL
Sbjct: 1 GKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHL 60
Query: 264 VLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSHPSPGKXLE 443
VLRLRGGMQIF + + + T + + + + ++ PP+ + GK LE
Sbjct: 61 VLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLIFA-GKQLE 118
Query: 444 XXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX--XRVNSRKE 617
R L + LVLRLRGGM I ++++S TI ++ ++
Sbjct: 119 DGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEG 178
Query: 618 VPP-KHKVFFPG 650
+PP + ++ F G
Sbjct: 179 IPPDQQRLIFAG 190
Score = 107 (37.7 bits), Expect = 0.0087, P = 0.0087
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 9 ESSDTIDNVKAKIQDKEGIPP 29
Score = 107 (37.7 bits), Expect = 0.0087, P = 0.0087
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 85 ESSDTIDNVKAKIQDKEGIPP 105
Score = 107 (37.7 bits), Expect = 0.0087, P = 0.0087
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 161 ESSDTIDNVKAKIQDKEGIPP 181
Score = 107 (37.7 bits), Expect = 0.0087, P = 0.0087
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 237 ESSDTIDNVKAKIQDKEGIPP 257
Score = 106 (37.3 bits), Expect = 0.013, P = 0.012
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 72 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 127
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 128 IQKESTLH 135
Score = 106 (37.3 bits), Expect = 0.013, P = 0.012
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 148 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 203
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 204 IQKESTLH 211
Score = 106 (37.3 bits), Expect = 0.013, P = 0.012
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 224 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 279
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 280 IQKESTLH 287
Score = 83 (29.2 bits), Expect = 6.1, P = 1.0
Identities = 29/61 (47%), Positives = 37/61 (60%), Frame = +1
Query: 313 GKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYNIXKES 486
GKTITLEV + + + QD +G PP +QQRLI + L+ G +YNI KES
Sbjct: 1 GKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYNIQKES 56
Query: 487 TLH 495
TLH
Sbjct: 57 TLH 59
>gi|6118549|gb|AAF04147.1| (AF193438) ubiquitin precursor [Hevea brasiliensis]
Length = 381
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
__________________________________________________
Database sequence: | | | | 381
0 150 300
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/199 (50%), Positives = 125/199 (62%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLGVESSDT-IDNVKAKIQDKEGIPPDQQR-F 119
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 120 IFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPGT 653
++ ++ +PP + ++ F G+
Sbjct: 180 AKIQDKEGIPPDQQRLIFAGS 200
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 380
Score = 378 (133.1 bits), Expect = 6.5e-34, P = 6.5e-34
Identities = 94/198 (47%), Positives = 118/198 (59%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAG L LADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGSSLRMVAPLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 114 (40.1 bits), Expect = 0.0022, P = 0.0022
Identities = 36/66 (54%), Positives = 43/66 (65%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI S L+ AP +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGSS-LRMVAPLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 95 (33.4 bits), Expect = 0.38, P = 0.31
Identities = 32/66 (48%), Positives = 40/66 (60%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITL V + + + QD +G PP +QQR I + L+ G +YN
Sbjct: 81 VKTLTGKTITLGVESSDTIDNVKAKIQDK-EGI-PP-DQQRFIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
>gi|82734|pir||S04863 ubiquitin precursor - maize (fragment)
>gi|226763|prf||1604470A poly-ubiquitin [Zea mays]
Length = 272
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ ____ _____
Frame 1 hits (HSPs): _____________ _____________ _____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | | 272
0 50 100 150 200 250
__________________
Annotated Domains:
Entrez domain: ubiquitin homology (fragment) #l 1..43
Entrez domain: ubiquitin homology #label UBH2 44..119
Entrez domain: ubiquitin homology #label UBH3 120..195
Entrez domain: ubiquitin homology #label UBH4 196..271
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 146..171
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 222..247
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 70..95
__________________
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 45 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 104
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 105 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 163
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 164 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 222
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 223 AKIQDKEGIPPDQQRLIFAG 242
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 121 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 180
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 181 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 239
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 240 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 271
Score = 284 (100.0 bits), Expect = 6.0e-24, P = 6.0e-24
Identities = 72/165 (43%), Positives = 96/165 (58%), Frame = +3
Query: 159 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSS 338
GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF + +
Sbjct: 2 GIPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVE 61
Query: 339 KALTPLTTSRPRSRTRKESPPEPATSHPSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ T + + + + ++ PP+ + GK LE R L + LVLRLRGG
Sbjct: 62 SSDT-IDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 119
Query: 519 MPIXPLKPPPAXYNPKIQNSQTIXX--XRVNSRKEVPP-KHKVFFPG 650
M I ++++S TI ++ ++ +PP + ++ F G
Sbjct: 120 MQIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 166
Score = 107 (37.7 bits), Expect = 0.0073, P = 0.0073
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 61 ESSDTIDNVKAKIQDKEGIPP 81
Score = 107 (37.7 bits), Expect = 0.0073, P = 0.0073
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 137 ESSDTIDNVKAKIQDKEGIPP 157
Score = 107 (37.7 bits), Expect = 0.0073, P = 0.0073
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 213 ESSDTIDNVKAKIQDKEGIPP 233
Score = 106 (37.3 bits), Expect = 0.011, P = 0.010
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 48 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 103
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 104 IQKESTLH 111
Score = 106 (37.3 bits), Expect = 0.011, P = 0.010
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 124 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 179
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 180 IQKESTLH 187
Score = 106 (37.3 bits), Expect = 0.011, P = 0.010
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 200 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 255
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 256 IQKESTLH 263
>gi|3603456|gb|AAC35858.1| (AF088848) polyubiquitin [Capsicum chinense]
Length = 265
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ _____
Frame 1 hits (HSPs): _____________ _____________ _____________
__________________________________________________
Database sequence: | | | | | | | 265
0 50 100 150 200 250
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 38 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 97
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 98 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 156
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 157 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 215
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 216 TKIQDKEGIPPDQQRLIFAG 235
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 114 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 173
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 174 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKTKIQDKEGIPPDQQRLI 232
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 233 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 264
Score = 249 (87.7 bits), Expect = 3.1e-20, P = 3.1e-20
Identities = 66/159 (41%), Positives = 90/159 (56%), Frame = +3
Query: 177 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPL 356
QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF + + + T +
Sbjct: 1 QRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-I 59
Query: 357 TTSRPRSRTRKESPPEPATSHPSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPL 536
+ + + ++ PP+ + GK LE R L + LVLRLRGGM I
Sbjct: 60 DNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVK 118
Query: 537 KPPPAXYNPKIQNSQTIXX--XRVNSRKEVPP-KHKVFFPG 650
++++S TI ++ ++ +PP + ++ F G
Sbjct: 119 TLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 159
Score = 107 (37.7 bits), Expect = 0.0069, P = 0.0069
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 54 ESSDTIDNVKAKIQDKEGIPP 74
Score = 107 (37.7 bits), Expect = 0.0069, P = 0.0069
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 130 ESSDTIDNVKAKIQDKEGIPP 150
Score = 106 (37.3 bits), Expect = 0.010, P = 0.0099
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 41 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 96
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 97 IQKESTLH 104
Score = 106 (37.3 bits), Expect = 0.010, P = 0.0099
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 117 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 172
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 173 IQKESTLH 180
Score = 106 (37.3 bits), Expect = 0.010, P = 0.0099
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 193 VKTLTGKTITLEVESSDTIDNVKTKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 248
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 249 IQKESTLH 256
>gi|3882081|emb|CAA10056.1| (AJ012552) polyubiquitin [Vicia faba]
>gi|5732081|gb|AAD48980.1|AF162444_12 (AF162444) contains
similarity to Pfam family PF00240 - Ubiquitin family; score=526.5,
E=1.9e-154, N=3 [Arabidopsis thaliana] >gi|7267264|emb|CAB81047.1|
(AL161502) contains similarity to Pfam family PF00240 - Ubiquitin
family, score=526.5, E=1.9e-154, N=3~strong similarity to~Contains
Ubiquitin domain signature and profile AA27-52;Ubiquitin domain
signature and profile AA103-128;Ubiquitin domain signat>
>gi|12583569|emb|CAC27335.1| (AJ271129) putative polyubiquitin
[Picea abies]
Length = 229
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ______ _____ ______
Frame 1 hits (HSPs): _______________ _______________ ______________
__________________________________________________
Database sequence: | | | | | | 229
0 50 100 150 200
Plus Strand HSPs:
Score = 423 (148.9 bits), Expect = 1.1e-38, P = 1.1e-38
Identities = 101/198 (51%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 396 (139.4 bits), Expect = 8.1e-36, P = 8.1e-36
Identities = 92/153 (60%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 197 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGG 228
Score = 107 (37.7 bits), Expect = 0.0048, P = 0.0048
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.0048, P = 0.0048
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.0048, P = 0.0048
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 106 (37.3 bits), Expect = 0.0070, P = 0.0070
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.0070, P = 0.0070
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.0070, P = 0.0070
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
>gi|625509|pir||JQ1728 ubiquitin precursor - Arabidopsis thaliana (fragment)
Length = 313
Frame 3 hits (HSPs): ________________________________________________
Frame 2 hits (HSPs): _____ ____ ____
Frame 1 hits (HSPs): ___________ ___________ ____________
Annotated Domains: ________________________________________
__________________________________________________
Database sequence: | | | | | | | | 313
0 50 100 150 200 250 300
__________________
Annotated Domains:
Entrez domain: ubiquitin homology (fragment) #l 1..20
Entrez domain: ubiquitin homology #label UBH2 21..96
Entrez domain: ubiquitin homology #label UBH3 97..171
Entrez domain: ubiquitin homology #label UBH4 172..247
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 123..148
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 198..223
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 47..72
__________________
Plus Strand HSPs:
Score = 422 (148.6 bits), Expect = 1.4e-38, P = 1.4e-38
Identities = 102/197 (51%), Positives = 129/197 (65%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 22 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 81
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 82 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 140
Query: 420 PSPGKXLEXXRPLPE-LQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX- 593
+ GK LE R L + +Q ++ LVLRLRGGM I ++++S TI
Sbjct: 141 FA-GKQLEDGRTLADNIQKESTLH--LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 197
Query: 594 -XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 198 KAKIQDKEWIPPDQQRLIFAG 218
Score = 404 (142.2 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 100/197 (50%), Positives = 124/197 (62%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLAD NI
Sbjct: 98 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD-NI 156
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 157 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEWIPPDQQRLI 215
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 216 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSGTIDNVK 274
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 275 AKIQDKEGIPPDQQRLIFAG 294
Score = 225 (79.2 bits), Expect = 1.1e-17, P = 1.1e-17
Identities = 46/52 (88%), Positives = 46/52 (88%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDG 215
Q FVK LTGK ITLEVESS TIDNVKAK QDKEGIPPDQQRLIFAGKQLE G
Sbjct: 249 QIFVKTLTGKTITLEVESSGTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEGG 300
Score = 170 (59.8 bits), Expect = 1.8e-11, P = 1.8e-11
Identities = 50/143 (34%), Positives = 74/143 (51%), Frame = +3
Query: 225 ADYNIQKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPE 404
ADYNIQKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 1 ADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPD 59
Query: 405 PATSHPSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQT 584
+ GK LE R L + LVLRLRGGM I ++++S T
Sbjct: 60 QQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT 118
Query: 585 IXX--XRVNSRKEVPP-KHKVFFPG 650
I ++ ++ +PP + ++ F G
Sbjct: 119 IDNVKAKIQDKEGIPPDQQRLIFAG 143
Score = 107 (37.7 bits), Expect = 0.0097, P = 0.0097
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 38 ESSDTIDNVKAKIQDKEGIPP 58
Score = 107 (37.7 bits), Expect = 0.0097, P = 0.0097
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 114 ESSDTIDNVKAKIQDKEGIPP 134
Score = 106 (37.3 bits), Expect = 0.014, P = 0.014
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 25 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 80
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 81 IQKESTLH 88
Score = 104 (36.6 bits), Expect = 0.024, P = 0.024
Identities = 31/66 (46%), Positives = 38/66 (57%), Frame = +1
Query: 298 VKTLTGKTITLEVRKL*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYNIX 477
VKTLTGKTITLEV + + + PP +QQRLI + L+ G +YNI
Sbjct: 176 VKTLTGKTITLEVESSDTIDNVKAKIQDKEWIPP-DQQRLIFAGKQ-LEDGRTLADYNIQ 233
Query: 478 KESTLH 495
KESTLH
Sbjct: 234 KESTLH 239
Score = 100 (35.2 bits), Expect = 0.067, P = 0.065
Identities = 20/21 (95%), Positives = 20/21 (95%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESS TIDNVKAKIQDKEGIPP
Sbjct: 265 ESSGTIDNVKAKIQDKEGIPP 285
Score = 90 (31.7 bits), Expect = 1.1, P = 0.65
Identities = 33/66 (50%), Positives = 41/66 (62%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G + N
Sbjct: 101 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLAD-N 155
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 156 IQKESTLH 163
>gi|7439572|pir||T02358 ubiquitin homolog T8F5.13 - Arabidopsis thaliana
>gi|3335355|gb|AAC27157.1|AAC27157 (AC004512) Match to
polyubiquitin DNA gb|L05401 from A. thaliana. Contains insertion
of mitochondrial NADH dehydrogenase gb|X82618 and gb|X98301. May
be a pseudogene with an expressed insert. EST gb|AA586248 comes
from this region. [Arabidopsis thal>
Length = 324
Frame 3 hits (HSPs): ____________________________________________ ____
Frame 2 hits (HSPs): ____ ____ ____
Frame 1 hits (HSPs): ___________ __________ ___________ ___
__________________________________________________
Database sequence: | | | | | | | | 324
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 422 (148.6 bits), Expect = 1.4e-38, P = 1.4e-38
Identities = 102/197 (51%), Positives = 129/197 (65%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPE-LQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX- 593
+ GK LE R L + +Q ++ LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADNIQKESTLH--LVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNV 177
Query: 594 -XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 178 KAKIQDKEWIPPDQQRLIFAG 198
Score = 404 (142.2 bits), Expect = 1.1e-36, P = 1.1e-36
Identities = 100/197 (50%), Positives = 124/197 (62%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLAD NI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLAD-NI 136
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 137 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEWIPPDQQRLI 195
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 196 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSGTIDNVK 254
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 255 AKIQDKEGIPPDQQRLIFAG 274
Score = 225 (79.2 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 46/52 (88%), Positives = 46/52 (88%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDG 215
Q FVK LTGK ITLEVESS TIDNVKAK QDKEGIPPDQQRLIFAGKQLE G
Sbjct: 229 QIFVKTLTGKTITLEVESSGTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEGG 280
Score = 107 (37.7 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 4.6e-05, Sum P(3) = 4.6e-05
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 106 (37.3 bits), Expect = 0.0054, Sum P(2) = 0.0054
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 105 (37.0 bits), Expect = 3.2e-27, Sum P(2) = 3.2e-27
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +3
Query: 222 LADYNIQKESTLHLVLRLRGG 284
LADYNIQKESTLHLVLRLRGG
Sbjct: 302 LADYNIQKESTLHLVLRLRGG 322
Score = 104 (36.6 bits), Expect = 0.0097, Sum P(2) = 0.0097
Identities = 31/66 (46%), Positives = 38/66 (57%), Frame = +1
Query: 298 VKTLTGKTITLEVRKL*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYNIX 477
VKTLTGKTITLEV + + + PP +QQRLI + L+ G +YNI
Sbjct: 156 VKTLTGKTITLEVESSDTIDNVKAKIQDKEWIPP-DQQRLIFAGKQ-LEDGRTLADYNIQ 213
Query: 478 KESTLH 495
KESTLH
Sbjct: 214 KESTLH 219
Score = 100 (35.2 bits), Expect = 0.00041, Sum P(3) = 0.00041
Identities = 20/21 (95%), Positives = 20/21 (95%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESS TIDNVKAKIQDKEGIPP
Sbjct: 245 ESSGTIDNVKAKIQDKEGIPP 265
Score = 90 (31.7 bits), Expect = 0.50, Sum P(2) = 0.39
Identities = 33/66 (50%), Positives = 41/66 (62%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G + N
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLAD-N 135
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 136 IQKESTLH 143
Score = 48 (16.9 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +1
Query: 463 NYNIXKESTLH 495
+YNI KESTLH
Sbjct: 304 DYNIQKESTLH 314
Score = 38 (13.4 bits), Expect = 2.8e-24, Sum P(3) = 2.8e-24
Identities = 8/8 (100%), Positives = 8/8 (100%), Frame = +3
Query: 495 LVLRLRGG 518
LVLRLRGG
Sbjct: 315 LVLRLRGG 322
>gi|422248|pir||S34655 polyubiquitin 5 - basidiomycete (Phanerochaete
chrysosporium) >gi|395056|emb|CAA80851.1| (Z24723) ubiquitin
[Phanerochaete chrysosporium]
Length = 381
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___ ___
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 381
0 150 300
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology #label UBH2 77..152
Entrez domain: ubiquitin homology #label UBH3 153..228
Entrez domain: ubiquitin homology #label UBH4 229..304
Entrez domain: ubiquitin homology #label UBH5 305..380
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 255..280
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 331..356
__________________
Plus Strand HSPs:
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 395 (139.0 bits), Expect = 1.0e-35, P = 1.0e-35
Identities = 91/154 (59%), Positives = 105/154 (68%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGM 521
+ GK LE R L + LVLRLRGG+
Sbjct: 349 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGL 381
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
>gi|2739333|gb|AAB94630.1| (U74318) polyubiquitin [Schizophyllum commune]
Length = 305
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): _____ ____ ____ ____
Frame 1 hits (HSPs): ___________ ___________ ___________ ___________
__________________________________________________
Database sequence: | | | | | | || 305
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 197 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 395 (139.0 bits), Expect = 1.0e-35, P = 1.0e-35
Identities = 91/154 (59%), Positives = 105/154 (68%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGM 521
+ GK LE R L + LVLRLRGG+
Sbjct: 273 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGL 305
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
>gi|3091264|gb|AAC15225.1| (AF060501) polyubiquitin [Botryotinia fuckeliana]
Length = 305
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): _____ ____ ____ ____
Frame 1 hits (HSPs): ___________ ___________ ___________ ___________
__________________________________________________
Database sequence: | | | | | | || 305
0 50 100 150 200 250 300
Plus Strand HSPs:
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 197 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 393 (138.3 bits), Expect = 1.7e-35, P = 1.7e-35
Identities = 91/153 (59%), Positives = 104/153 (67%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGG 518
+ GK LE R L + LVLRLRGG
Sbjct: 273 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGG 304
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 170 ESSDTIDNVKAKIQDKEGIPP 190
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
>gi|576773|gb|AAA82978.1| (U16956) polyubiquitin [Filobasidiella neoformans]
Length = 381
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ___ ___ ___ ___
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
__________________________________________________
Database sequence: | | | | 381
0 150 300
Plus Strand HSPs:
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 417 (146.8 bits), Expect = 4.8e-38, P = 4.8e-38
Identities = 99/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 78 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 137
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 138 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 196
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK L+ R L + LVLRLRGGM I ++++S TI
Sbjct: 197 FA-GKQLDDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 255
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 256 AKIQDKEGIPPDQQRLIFAG 275
Score = 417 (146.8 bits), Expect = 4.8e-38, P = 4.8e-38
Identities = 99/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQL+DGRTL+DYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLDDGRTLSDYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 398 (140.1 bits), Expect = 5.0e-36, P = 5.0e-36
Identities = 92/154 (59%), Positives = 105/154 (68%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTL+DYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLSDYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGM 521
+ GK LE R L + LVLRLRGGM
Sbjct: 349 FA-GKQLEDGRTLSDYNIQKESTLHLVLRLRGGM 381
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 18 ESSDTIDNVKAKIQDKEGIPP 38
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 94 ESSDTIDNVKAKIQDKEGIPP 114
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 246 ESSDTIDNVKAKIQDKEGIPP 266
Score = 107 (37.7 bits), Expect = 0.014, P = 0.014
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 322 ESSDTIDNVKAKIQDKEGIPP 342
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 106 (37.3 bits), Expect = 0.019, P = 0.019
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLSDYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
Score = 104 (36.6 bits), Expect = 0.034, P = 0.033
Identities = 34/66 (51%), Positives = 41/66 (62%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LDDGRTLSDYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
>gi|82040|pir||PS0428 ubiquitin precursor - flax (fragment)
>gi|168304|gb|AAA33401.1| (M57895) ubiquitin [Linum usitatissimum]
Length = 305
Frame 3 hits (HSPs): __________________________________________________
Frame 2 hits (HSPs): ____ _____ ____ ____
Frame 1 hits (HSPs): ___________ ____________ ___________ ___
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | | || 305
0 50 100 150 200 250 300
__________________
Annotated Domains:
Entrez domain: ubiquitin homology (fragment) #l 1..41
Entrez domain: ubiquitin homology #label UBH2 42..117
Entrez domain: ubiquitin homology #label UBH3 118..193
Entrez domain: ubiquitin homology #label UBH4 194..269
Entrez domain: ubiquitin homology (fragment) #l 270..305
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 144..169
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 220..245
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 68..93
__________________
Plus Strand HSPs:
Score = 420 (147.8 bits), Expect = 2.3e-38, P = 2.3e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q F+K LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 43 QIFLKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 102
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 103 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 161
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 162 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIDNVK 220
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 221 AKIQDKEGIPPDQQRLIFAG 240
Score = 407 (143.3 bits), Expect = 5.5e-37, P = 5.5e-37
Identities = 97/176 (55%), Positives = 113/176 (64%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 119 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 178
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 179 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IDNVKAKIQDKEGIPPDQQRLI 237
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTI 587
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 238 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTI 292
Score = 279 (98.2 bits), Expect = 2.0e-23, P = 2.0e-23
Identities = 71/164 (43%), Positives = 95/164 (57%), Frame = +3
Query: 162 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSK 341
IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIF + +
Sbjct: 1 IPPDQQRLIFAGKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFLKTLTGKTITLEVES 60
Query: 342 ALTPLTTSRPRSRTRKESPPEPATSHPSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGM 521
+ T + + + + ++ PP+ + GK LE R L + LVLRLRGGM
Sbjct: 61 SDT-IDNVKAKIQDKEGIPPDQQRLIFA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGM 118
Query: 522 PIXPLKPPPAXYNPKIQNSQTIXX--XRVNSRKEVPP-KHKVFFPG 650
I ++++S TI ++ ++ +PP + ++ F G
Sbjct: 119 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGIPPDQQRLIFAG 164
Score = 149 (52.5 bits), Expect = 7.5e-09, P = 7.5e-09
Identities = 31/35 (88%), Positives = 31/35 (88%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGI 164
Q FVK LTGK ITLEVESSDTIDNVKAK QDKEGI
Sbjct: 271 QIFVKTLTGKTITLEVESSDTIDNVKAKIQDKEGI 305
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 59 ESSDTIDNVKAKIQDKEGIPP 79
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 135 ESSDTIDNVKAKIQDKEGIPP 155
Score = 107 (37.7 bits), Expect = 0.0093, P = 0.0092
Identities = 21/21 (100%), Positives = 21/21 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGIPP 400
ESSDTIDNVKAKIQDKEGIPP
Sbjct: 211 ESSDTIDNVKAKIQDKEGIPP 231
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 122 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 177
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 178 IQKESTLH 185
Score = 106 (37.3 bits), Expect = 0.013, P = 0.013
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 198 VKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 253
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 254 IQKESTLH 261
Score = 103 (36.3 bits), Expect = 0.030, P = 0.030
Identities = 33/66 (50%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
+KTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 46 LKTLTGKTITLEVESSDTIDNVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 101
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 102 IQKESTLH 109
Score = 93 (32.7 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 19/19 (100%), Positives = 19/19 (100%), Frame = +2
Query: 338 ESSDTIDNVKAKIQDKEGI 394
ESSDTIDNVKAKIQDKEGI
Sbjct: 287 ESSDTIDNVKAKIQDKEGI 305
Score = 61 (21.5 bits), Expect = 0.00081, Sum P(2) = 0.00081
Identities = 13/13 (100%), Positives = 13/13 (100%), Frame = +1
Query: 298 VKTLTGKTITLEV 336
VKTLTGKTITLEV
Sbjct: 274 VKTLTGKTITLEV 286
>gi|541546|pir||S40611 polyubiquitin 5 - Volvox carteri
>gi|395295|emb|CAA52290.1| (X74214) polyubiquitin [Volvox carteri]
Length = 381
Frame 3 hits (HSPs): __________________________________________________
Frame 1 hits (HSPs): _________ _________ _________ _________ _________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 381
0 150 300
__________________
Annotated Domains:
Entrez domain: ubiquitin homology #label UBH1 1..76
Entrez domain: ubiquitin homology #label UBH2 77..152
Entrez domain: ubiquitin homology #label UBH3 153..228
Entrez domain: ubiquitin homology #label UBH4 229..304
Entrez domain: ubiquitin homology #label UBH5 305..380
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 103..128
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 179..204
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 255..280
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 27..52
PROSITE UBIQUITIN_1: Ubiquitin domain signature. 331..356
__________________
Plus Strand HSPs:
Score = 419 (147.5 bits), Expect = 3.0e-38, P = 3.0e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 2 QIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 61
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 62 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IENVKAKIQDKEGIPPDQQRLI 120
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 121 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIENVK 179
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 180 AKIQDKEGIPPDQQRLIFAG 199
Score = 419 (147.5 bits), Expect = 3.0e-38, P = 3.0e-38
Identities = 100/198 (50%), Positives = 125/198 (63%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 154 QIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 213
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 214 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IENVKAKIQDKEGIPPDQQRLI 272
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGMPIXPLKPPPAXYNPKIQNSQTIXX-- 593
+ GK LE R L + LVLRLRGGM I ++++S TI
Sbjct: 273 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDTIENVK 331
Query: 594 XRVNSRKEVPP-KHKVFFPG 650
++ ++ +PP + ++ F G
Sbjct: 332 AKIQDKEGIPPDQQRLIFAG 351
Score = 394 (138.7 bits), Expect = 1.3e-35, P = 1.3e-35
Identities = 91/154 (59%), Positives = 105/154 (68%), Frame = +3
Query: 60 QXFVKXLTGKXITLEVESSDTIDNVKAKXQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 239
Q FVK LTGK ITLEVESSDTI+NVKAK QDKEGIPPDQQRLIFAGKQLEDGRTLADYNI
Sbjct: 230 QIFVKTLTGKTITLEVESSDTIENVKAKIQDKEGIPPDQQRLIFAGKQLEDGRTLADYNI 289
Query: 240 QKESTLHLVLRLRGGMQIFRQDSHWQNHNPRSSKALTPLTTSRPRSRTRKESPPEPATSH 419
QKESTLHLVLRLRGGMQIF + + + T + + + + ++ PP+
Sbjct: 290 QKESTLHLVLRLRGGMQIFVKTLTGKTITLEVESSDT-IENVKAKIQDKEGIPPDQQRLI 348
Query: 420 PSPGKXLEXXRPLPELQHPXGINPSLVLRLRGGM 521
+ GK LE R L + LVLRLRGG+
Sbjct: 349 FA-GKQLEDGRTLADYNIQKESTLHLVLRLRGGL 381
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 5 VKTLTGKTITLEVESSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 60
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 61 IQKESTLH 68
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 81 VKTLTGKTITLEVESSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 136
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 137 IQKESTLH 144
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 157 VKTLTGKTITLEVESSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 212
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 213 IQKESTLH 220
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 233 VKTLTGKTITLEVESSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 288
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 289 IQKESTLH 296
Score = 107 (37.7 bits), Expect = 0.015, P = 0.015
Identities = 34/66 (51%), Positives = 42/66 (63%), Frame = +1
Query: 298 VKTLTGKTITLEVRK--L*HH*QRQGQDPGQGRNPPQNQQRLILRPESXLKXGAPSPNYN 471
VKTLTGKTITLEV + + + QD +G PP +QQRLI + L+ G +YN
Sbjct: 309 VKTLTGKTITLEVESSDTIENVKAKIQDK-EGI-PP-DQQRLIFAGKQ-LEDGRTLADYN 364
Query: 472 IXKESTLH 495
I KESTLH
Sbjct: 365 IQKESTLH 372
WARNING: HSPs involving 606 database sequences were not reported due to the
limiting value of parameter B = 50.
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.94
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.315 0.135 0.398 same same same
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.333 0.145 0.508
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.323 0.134 0.403
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.349 0.160 0.629
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.335 0.152 0.508
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.343 0.154 0.536
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 221 204 10. 77 3 12 23 0.11 35
31 0.11 38
+2 0 221 203 10. 77 3 12 22 0.095 35
31 0.11 38
+1 0 222 207 10. 77 3 12 22 0.098 35
31 0.11 38
-1 0 222 204 10. 77 3 12 22 0.096 35
31 0.11 38
-2 0 221 207 10. 77 3 12 22 0.098 35
31 0.11 38
-3 0 221 205 10. 77 3 12 22 0.097 35
31 0.11 38
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 656
No. of states in DFA: 585 (58 KB)
Total size of DFA: 208 KB (256 KB)
Time to generate neighborhood: 0.02u 0.00s 0.02t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 245.83u 1.03s 246.86t Elapsed: 00:00:49
Total cpu time: 246.06u 1.11s 247.17t Elapsed: 00:00:49
Start: Mon Oct 1 21:39:57 2001 End: Mon Oct 1 21:40:46 2001
WARNINGS ISSUED: 2
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000