NCBI UniGene banner graphic
PubMed Nucleotide Protein Genome Structure Popset Taxonomy
 Search
NCBI

UniGene
Homepage
FAQs
Query Tips
Library Browser
DDD
Download UniGene

Related Databases
Gene
HomoloGene
dbEST
Trace Archive

NIH cDNA Projects
MGC | ZGC | XGC
Finding cDNAs
UGID:256400     UniGene Mm.1541     Mus musculus (mouse)   Snta1 Order cDNA clone, Links
Syntrophin, acidic 1 (Snta1)
SELECTED PROTEIN SIMILARITIES
Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.
Reference ProteinSpeciesId(%)Len(aa)
NP_033254.1 syntrophin, acidic 1 M. musculus 100.0 502
NP_003089.1 acidic alpha 1 syntrophin H. sapiens 94.5 504
NP_001088847.1 hypothetical protein LOC496157 X. laevis 69.5 472
NP_001002175.1 hypothetical protein LOC431722 D. rerio 58.0 497
NP_524205.2 Syntrophin-like 1, isoform B D. melanogaster 46.8 530
NP_492521.1 SynTrophiN family member (stn-1) C. elegans 45.1 398

GENE EXPRESSION
Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.
EST Profile: Approximate expression patterns inferred from EST sources.
[Show more entries with profiles like this]
GEO profiles: Experimental gene expression data (Gene Expression Omnibus).
cDNA Sources: embryonic tissue; brain; mammary gland; liver; bladder; mixed; kidney; heart; pineal gland; intestine; skin; sympathetic ganglion; spinal cord; eye; uncharacterized tissue; bone; adipose tissue; lung; joint; muscle; bone marrow; nasopharynx; ovary
MAPPING POSITION
Genomic location specified by transcript mapping, radiation hybrid mapping, genetic mapping or cytogenetic mapping.
Chromosome: 2
Map position: 2 H1|2 84.0 cM
UniSTS entry: Chr 2 (n/a)
SEQUENCES
Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (8)

AK215953.1 Mus musculus cDNA, clone:Y2G0136L13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028991, based on BLAT search
AK185631.1 Mus musculus cDNA, clone:Y0G0134L13, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028991, based on BLAT search P
AK181361.1 Mus musculus cDNA, clone:Y0G0117N06, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028991, based on BLAT search
AK179431.1 Mus musculus cDNA, clone:Y0G0110G02, strand:minus, reference:ENSEMBL:Mouse-Transcript-ENST:ENSMUST00000028991, based on BLAT search
AK137379.1 Mus musculus 16 days neonate cerebellum cDNA, RIKEN full-length enriched library, clone:9630040F19 product:syntrophin, acidic 1, full insert sequence P
U00677.1 Mus musculus alpha-syntrophin mRNA, complete cds P
NM_009228.2 Mus musculus syntrophin, acidic 1 (Snta1), mRNA PA
BC018546.1 Mus musculus syntrophin, acidic 1, mRNA (cDNA clone MGC:18480 IMAGE:3674921), complete cds PA

EST sequences (10 of 98) [Show all sequences]

BY104757.1 Clone K630156J01 mixed 5' read P
BY247192.1 Clone K230309E02 brain 5' read P
BY291492.1 Clone K530308F23 brain 5' read P
BY346258.1 Clone L730022N23 joint 5' read P
BY417465.1 Clone I920026O14 heart 3' read A
BY550599.1 Clone F730214O05 skin 3' read A
BY722152.1 Clone 9530051P08 bladder 5' read P
BY727288.1 Clone B230336N24 brain 5' read
BY753473.1 Clone I420010J16 bone 5' read P
CB575395.1 Clone IMAGE:30295151 embryonic tissue 5' read P


Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria

 
NLM | NIH | UniGene | Privacy Statement | Disclaimer | NCBI Help