Vibrio parahaemolyticus RIMD 2210633 chromosome I

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184901-185000 (1-100) 185001-185100 (101-200) 185101-185200 (201-300) 185201-185300 (301-400) 185301-185400 (401-500)
185401-185500 (501-600) 185501-185600 (601-700) 185601-185700 (701-800) 185701-185800 (801-900) 185801-185900 (901-1000)
[185901-186000 (1001-1100)] 186001-186100 (1101-1200) 186101-186200 (1201-1300) 186201-186300 (1301-1400) 186301-186400 (1401-1500)
186401-186500 (1501-1600) 186501-186600 (1601-1700) 186601-186700 (1701-1800) 186701-186800 (1801-1900) 186801-186900 (1901-2000)
186901-187000 (2001-2100) 187001-187100 (2101-2200) 187101-187200 (2201-2300) 187201-187300 (2301-2400) 187301-187400 (2401-2500)
187401-187500 (2501-2600) 187501-187600 (2601-2700) 187601-187700 (2701-2800) 187701-187800 (2801-2900) 187801-187900 (2901-3000)
187901-187980 (3001-3080)


Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185901 hypothetical VP1001 amino acid ABC transporter, permease protein
similar to GB:AAF95009.1 (AE004261) percent identity 85 in 225 aa
genbank 28897775 NP_797380.1 225 1046615 1047292
185902 hypothetical VP1002 hypothetical protein
similar to GB:AAG03961.1 (AE004493) percent identity 25 in 957 aa
genbank 28897776 NP_797381.1 906 1047439 1050159
185903 hypothetical VP1003 exodeoxyribonuclease III
similar to GB:AAF95008.1 (AE004261) percent identity 83 in 268 aa
genbank 28897777 NP_797382.1 268 1050256 1051062
185904 hypothetical VP1004 hypothetical protein
similar to GB:AAF95006.1 (AE004261) percent identity 57 in 47 aa
genbank 28897778 NP_797383.1 54 1051153 1051317
185905 hypothetical VP1005 primosomal replication protein N''
similar to GB:AAF95005.1 (AE004261) percent identity 57 in 170 aa
genbank 28897779 NP_797384.1 181 1051317 1051862
185906 hypothetical VP1006 hypothetical protein
similar to GB:AAF95004.1 (AE004261) percent identity 81 in 259 aa
genbank 28897780 NP_797385.1 261 1051859 1052644
185907 hypothetical VP1007 ATP-dependent helicase, DinG family
similar to GB:AAF95003.1 (AE004261) percent identity 75 in 691 aa
genbank 28897781 NP_797386.1 691 1052659 1054734
185908 hypothetical VP1008 putative outer membrane porin protein; locus of qsr prophage
similar to GB:AAB40749.1 (U82598) percent identity 22 in 401 aa
genbank 28897782 NP_797387.1 359 1055153 1056232
185909 hypothetical VP1009 hypothetical protein
similar to GB:AAF95001.1 (AE004260) percent identity 25 in 231 aa
genbank 28897783 NP_797388.1 217 1056492 1057145
185910 hypothetical VP1010 pseudouridine synthase family 1 protein
similar to GB:AAF94299.1 (AE004194) percent identity 67 in 241 aa
genbank 28897784 NP_797389.1 238 1057244 1057960
185911 hypothetical VP1011 isocitrate dehydrogenase
similar to GB:AAF94300.1 (AE004194) percent identity 84 in 741 aa
genbank 28897785 NP_797390.1 741 1058272 1060497
185912 hypothetical VP1012 cold shock-like protein CspD
similar to GB:AAF94301.1 (AE004194) percent identity 84 in 72 aa
genbank 28897786 NP_797391.1 79 1060628 1060867
185913 clpS hypothetical VP1013 ATP-dependent Clp protease adaptor protein ClpS
involved in the modulation of the specificity of the ClpAP-mediated ATP-dependent protein degradation; binds to the N-terminal domain of the chaperone ClpA
genbank 28897787 NP_797392.1 106 1061546 1061866
185914 hypothetical VP1014 ATP-dependent Clp protease, ATP-binding subunit ClpA
similar to GB:AAF94303.1 (AE004194) percent identity 91 in 757 aa
genbank 28897788 NP_797393.1 756 1061914 1064184
185915 hypothetical VP1015 hypothetical protein
similar to EMB:CAC97042.1 (AL596170) percent identity 27 in 339 aa
genbank 28897789 NP_797394.1 346 1064317 1065357
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185916 hypothetical VP1016 translation initiation factor IF-1
Stimulates the activities of initiation factors IF-2 andIF-3
genbank 28897790 NP_797395.1 72 1065426 1065644
185917 hypothetical VP1017 arginyl-tRNA-protein transferase-related protein
similar to GB:AAF94886.1 (AE004251) percent identity 62 in 234 aa
genbank 28897791 NP_797396.1 233 1065726 1066427
185918 hypothetical VP1018 leucyl/phenylalanyl-tRNA-protein transferase
similar to GB:AAF94885.1 (AE004251) percent identity 68 in 232 aa
genbank 28897792 NP_797397.1 236 1066424 1067134
185919 hypothetical VP1019 putative outer membrane protein
similar to GB:AAG10082.1 (AF295331) percent identity 38 in 128 aa
genbank 28897793 NP_797398.1 159 1067171 1067650
185920 hypothetical VP1020 3-phosphoshikimate 1-carboxyvinyltransferase
catalyzes the formation of 5-O-(1-carboxyvinyl)-3-phosphoshikimate from phosphoenolpyruvate and 3-phosphoshikimate in tryptophan biosynthesis
genbank 28897794 NP_797399.1 426 1067812 1069092
185921 hypothetical VP1021 hypothetical protein
similar to GB:AAF94881.1 (AE004251) percent identity 76 in 82 aa
genbank 28897795 NP_797400.1 82 1069150 1069398
185922 hypothetical VP1022 DNA topoisomerase I
catalyzes the ATP-dependent breakage of signle-stranded DNA followed by passage and rejoining, maintains net negative superhelicity
genbank 28897796 NP_797401.1 876 1069863 1072493
185923 glgC hypothetical VP1023 glucose-1-phosphate adenylyltransferase
catalyzes the formation of ADP-glucose from alpha-D-glucose 1-phosphate
genbank 28897797 NP_797402.1 405 1073090 1074307
185924 hypothetical VP1024 glycogen synthase
catalyzes the formation of alpha-1,4-glucan chains from ADP-glucose
genbank 28897798 NP_797403.1 485 1074297 1075754
185925 hypothetical VP1025 putative beta-ketoadipate enol-lactone hydrolase
similar to GB:AAF94875.1 (AE004250) percent identity 81 in 263 aa
genbank 28897799 NP_797404.1 267 1075877 1076680
185926 hypothetical VP1026 hypothetical protein
similar to GB:AAF94874.1 (AE004250) percent identity 50 in 101 aa
genbank 28897800 NP_797405.1 106 1076722 1077042
185927 hypothetical VP1027 hypothetical protein
similar to GB:AAF94873.1 (AE004250) percent identity 68 in 225 aa
genbank 28897801 NP_797406.1 230 1077042 1077734
185928 hypothetical VP1028 hypothetical protein
similar to GB:AAF94872.1 (AE004250) percent identity 66 in 195 aa
genbank 28897802 NP_797407.1 196 1077946 1078536
185929 hypothetical VP1029 hypothetical protein
unknown
genbank 28897803 NP_797408.1 61 1078529 1078714
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185930 hypothetical VP1030 transcriptional regulator, LacI family
similar to GB:AAF94871.1 (AE004250) percent identity 89 in 333 aa
genbank 28897804 NP_797409.1 334 1079009 1080013
185931 torD hypothetical VP1031 chaperone protein TorD
TorD;Involved in the biogenesis of torA. Acts on torA before the insertion of the molybdenum cofactor and, as a result, probably favors a conformation of the apoenzyme that is competent for acquiring the cofactor
genbank 28897805 NP_797410.1 215 1080451 1081098
185932 hypothetical VP1032 DNA-binding response regulator TorR
similar to GB:AAF94869.1 (AE004250) percent identity 84 in 237 aa
genbank 28897806 NP_797411.1 237 1081364 1082077
185933 hypothetical VP1033 hypothetical protein
similar to GB:AAF94868.1 (AE004250) percent identity 77 in 252 aa
genbank 28897807 NP_797412.1 261 1082147 1082932
185934 hypothetical VP1034 SmtA protein
similar to GB:AAF94867.1 (AE004249) percent identity 76 in 258 aa
genbank 28897808 NP_797413.1 263 1083047 1083838
185935 hypothetical VP1035 condesin subunit F
acts with MukB and MukE to condense the chromosome and allow for segregation during cell division
genbank 28897809 NP_797414.1 445 1083841 1085178
185936 hypothetical VP1036 condesin subunit E
acts with MukB and MukF to condense the chromosome and allow for segregation during cell division
genbank 28897810 NP_797415.1 248 1085138 1085884
185937 hypothetical VP1037 condesin subunit B
the structural maintenance of chromosomes (SMC) moiety of the condensin MukBEF
genbank 28897811 NP_797416.1 1487 1085887 1090350
185938 hypothetical VP1038 hypothetical protein
unknown
genbank 28897812 NP_797417.1 50 1090519 1090671
185939 hypothetical VP1039 hypothetical protein
unknown
genbank 28897813 NP_797418.1 14 1090813 1090857
185940 hypothetical VP1040 hypothetical protein
similar to GB:AAF94319.1 (AE004196) percent identity 86 in 317 aa
genbank 28897814 NP_797419.1 322 1090875 1091843
185941 hypothetical VP1041 gonadoliberin III-related protein
similar to GB:AAF94320.1 (AE004196) percent identity 78 in 501 aa
genbank 28897815 NP_797420.1 501 1091847 1093352
185942 hypothetical VP1043 hypothetical protein
similar to GB:AAF94321.1 (AE004196) percent identity 62 in 253 aa
genbank 28897816 NP_797421.1 248 1093364 1094110
185943 hypothetical VP1042 hypothetical protein
unknown
genbank 28897817 NP_797422.1 53 1094058 1094219
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185944 hypothetical VP1044 hypothetical protein
similar to GB:AAF94322.1 (AE004196) percent identity 76 in 323 aa
genbank 28897818 NP_797423.1 323 1094332 1095303
185945 hypothetical VP1045 hypothetical protein
similar to GB:AAF94323.1 (AE004196) percent identity 88 in 245 aa
genbank 28897819 NP_797424.1 245 1095416 1096153
185946 hypothetical VP1046 hypothetical protein
similar to GB:AAF94324.1 (AE004196) percent identity 68 in 289 aa
genbank 28897820 NP_797425.1 289 1096296 1097165
185947 hypothetical VP1047 aspartyl-tRNA synthetase
Catalyzes a two-step reaction, first charging an aspartate molecule by linking its carboxyl group to the alpha-phosphate of ATP, followed by transfer of the aminoacyl-adenylate to its tRNA
genbank 28897821 NP_797426.1 592 1097436 1099214
185948 ruvC hypothetical VP1048 Holliday junction resolvase
Cleaves the cruciform structure in supercoiled DNA by nicking strands with the same polarity at sites symmetrically opposed at the junction in the homologous arms
genbank 28897822 NP_797427.1 173 1099343 1099864
185949 hypothetical VP1049 hypothetical protein
similar to GB:AAD36222.1 (AE001772) percent identity 20 in 245 aa
genbank 28897823 NP_797428.1 371 1099986 1101101
185950 hypothetical VP1050 hypothetical protein
similar to GB:AAK86341.1 (AE007988) percent identity 29 in 117 aa
genbank 28897824 NP_797429.1 125 1101061 1101438
185951 ruvA hypothetical VP1051 Holliday junction DNA helicase motor protein
plays an essential role in ATP-dependent branch migration of the Holliday junction
genbank 28897825 NP_797430.1 204 1101517 1102131
185952 hypothetical VP1052 Holliday junction DNA helicase RuvB
promotes strand exchange during homologous recombination; RuvAB complex promotes branch migration; RuvABC complex scans the DNA durin gbranch migration and resolves Holliday junctions at consensus sequences; forms hexameric rings around opposite DNA arms
genbank 28897826 NP_797431.1 334 1102153 1103157
185953 hypothetical VP1053 cytochrome d ubiquinol oxidase, subunit I
similar to GB:AAF94992.1 (AE004260) percent identity 89 in 538 aa
genbank 28897827 NP_797432.1 538 1103588 1105204
185954 hypothetical VP1054 cytochrome d ubiquinol oxidase, subunit II
similar to GB:AAF94991.1 (AE004260) percent identity 85 in 378 aa
genbank 28897828 NP_797433.1 378 1105222 1106358
185955 hypothetical VP1055 hypothetical protein
similar to GB:AAF94989.1 (AE004260) percent identity 61 in 91 aa
genbank 28897829 NP_797434.1 100 1106471 1106773
185956 hypothetical VP1056 hypothetical protein
similar to GB:AAF94988.1 (AE004259) percent identity 71 in 136 aa
genbank 28897830 NP_797435.1 139 1106946 1107365
185957 hypothetical VP1057 TolQ protein
similar to GB:AAF94987.1 (AE004259) percent identity 84 in 227 aa
genbank 28897831 NP_797436.1 232 1107355 1108053
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185958 hypothetical VP1058 TolR membrane protein
similar to GB:AAF94986.1 (AE004259) percent identity 78 in 146 aa
genbank 28897832 NP_797437.1 147 1108059 1108502
185959 hypothetical VP1059 TolA protein
similar to GB:AAF94985.1 (AE004259) percent identity 65 in 354 aa
genbank 28897833 NP_797438.1 356 1108515 1109585
185960 tolB hypothetical VP1060 translocation protein TolB precursor
forms dimers; may be involved in cell envelope integrity; interacts with outer membrane proteins and with the C-terminal domain of inner membrane protein TolA
genbank 28897834 NP_797439.1 450 1109596 1110948
185961 hypothetical VP1061 peptidoglycan-associated lipoprotein
similar to GB:AAF94983.1 (AE004259) percent identity 79 in 174 aa
genbank 28897835 NP_797440.1 174 1110979 1111503
185962 hypothetical VP1062 hypothetical protein
similar to GB:AAF94982.1 (AE004259) percent identity 69 in 257 aa
genbank 28897836 NP_797441.1 251 1111519 1112274
185963 hypothetical VP1063 quinolinate synthetase
3 different subfamilies; catalyzes the formation of quinolinate from iminoaspartate and dihydroxyacetone phosphate
genbank 28897837 NP_797442.1 353 1112486 1113547
185964 hypothetical VP1064 putative eukaryotic-type potassium channels
similar to GB:AAL23192.1 (AE008905) percent identity 31 in 350 aa
genbank 28897838 NP_797443.1 347 1113666 1114709
185965 hypothetical VP1065 hypothetical protein
similar to GB:AAK24336.1 (AE005906) percent identity 46 in 132 aa
genbank 28897839 NP_797444.1 138 1114709 1115125
185966 hypothetical VP1066 hypothetical protein
similar to GB:AAL22061.1 (AE008846) percent identity 26 in 209 aa
genbank 28897840 NP_797445.1 189 1115134 1115703
185967 hypothetical VP1067 hypothetical protein
similar to EMB:CAC89514.1 (AJ414144) percent identity 59 in 387 aa
genbank 28897841 NP_797446.1 388 1115706 1116872
185968 hypothetical VP1068 hypothetical protein
similar to GB:AAF94980.1 (AE004259) percent identity 71 in 187 aa
genbank 28897842 NP_797447.1 203 1116946 1117557
185969 hypothetical VP1069 sensor histidine kinase
similar to GB:AAF94979.1 (AE004259) percent identity 55 in 734 aa
genbank 28897843 NP_797448.1 806 1117611 1120031
185970 hypothetical VP1070 hypothetical protein
similar to GB:AAF94976.1 (AE004259) percent identity 84 in 145 aa
genbank 28897844 NP_797449.1 149 1120488 1120937
185971 hypothetical VP1071 hypothetical protein
similar to EMB:CAD02867.1 (AL627277) percent identity 34 in 185 aa
genbank 28897845 NP_797450.1 378 1121252 1122388
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185972 hypothetical VP1072 putative helicase
similar to GB:AAL27733.1 (AF440571) percent identity 23 in 423 aa
genbank 28897846 NP_797451.1 607 1122580 1124403
185973 hypothetical VP1073 putative immunity repressor protein
unknown
genbank 28897847 NP_797452.1 80 1124767 1125009
185974 hypothetical VP1074 hypothetical protein
unknown
genbank 28897848 NP_797453.1 129 1125131 1125520
185975 hypothetical VP1075 hypothetical protein
unknown
genbank 28897849 NP_797454.1 209 1125582 1126211
185976 hypothetical VP1076 hypothetical protein
unknown
genbank 28897850 NP_797455.1 194 1126513 1127097
185977 hypothetical VP1077 integrase, phage family
similar to GB:AAF94908.1 (AE004253) percent identity 56 in 409 aa
genbank 28897851 NP_797456.1 412 1127706 1128944
185978 hypothetical VP1078 hypothetical protein
unknown
genbank 28897852 NP_797457.1 249 1129015 1129764
185979 hypothetical VP1079 hypothetical protein
unknown
genbank 28897853 NP_797458.1 624 1129807 1131681
185980 hypothetical VP1080 hypothetical protein
unknown
genbank 28897854 NP_797459.1 472 1132416 1133834
185981 hypothetical VP1081 hypothetical protein
unknown
genbank 28897855 NP_797460.1 263 1134207 1134998
185982 hypothetical VP1082 hypothetical protein
unknown
genbank 28897856 NP_797461.1 192 1134995 1135573
185983 hypothetical VP1083 putative ATP-dependent DNA helicase
similar to PIR:D64084 percent identity 27 in 661 aa
genbank 28897857 NP_797462.1 1139 1135576 1138995
185984 hypothetical VP1084 hypothetical protein
similar to DBJ:BAB77145.1 (AP003602) percent identity 42 in 133 aa
genbank 28897858 NP_797463.1 246 1139058 1139798
185985 hypothetical VP1085 hypothetical protein
similar to DBJ:BAB52478.1 (AP003008) percent identity 38 in 394 aa
genbank 28897859 NP_797464.1 392 1139773 1140951
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
185986 hypothetical VP1086 hypothetical protein
similar to DBJ:BAB52479.1 (AP003008) percent identity 41 in 130 aa
genbank 28897860 NP_797465.1 152 1140932 1141390
185987 hypothetical VP1087 hypothetical protein
similar to DBJ:BAB74175.1 (AP003589) percent identity 22 in 321 aa
genbank 28897861 NP_797466.1 669 1141491 1143500
185988 hypothetical VP1088 putative chemotaxis transducer
similar to GB:AAG06040.1 (AE004694) percent identity 40 in 385 aa
genbank 28897862 NP_797467.1 545 1144081 1145718
185989 hypothetical VP1090 hypothetical protein
unknown
genbank 28897863 NP_797468.1 39 1145809 1145928
185990 hypothetical VP1089 hypothetical protein
unknown
genbank 28897864 NP_797469.1 42 1145915 1146043
185991 hypothetical VP1091 putative transmembrane protein affecting septum formation and cell membrane permeability
similar to GB:AAL22259.1 (AE008856) percent identity 51 in 369 aa
genbank 28897865 NP_797470.1 379 1146143 1147282
185992 hypothetical VP1092 acridine efflux pump
similar to EMB:CAC35725.1 (AJ306389) percent identity 64 in 1039 aa
genbank 28897866 NP_797471.1 1053 1147285 1150446
185993 hypothetical VP1093 putative transcriptional regulator
similar to DBJ:BAB51433.1 (AP003005) percent identity 26 in 126 aa
genbank 28897867 NP_797472.1 150 1150648 1151100
185994 hypothetical VP1094 hypothetical protein
similar to GB:AAF95938.1 (AE004346) percent identity 61 in 318 aa
genbank 28897868 NP_797473.1 329 1151175 1152164
185995 hypothetical VP1095 hypothetical protein
unknown
genbank 28897869 NP_797474.1 66 1152468 1152668
185996 hypothetical VP1096 tryptophanyl-tRNA synthetase
catalyzes a two-step reaction; first charging a tryptophan molecule by linking its carboxyl group to the alpha-phosphate of ATP; second by transfer of the aminoacyl-adenylate to its tRNA
genbank 28897870 NP_797475.1 340 1152769 1153791
185997 hypothetical VP1097 putative ATP-dependent dsDNA exonuclease SbcC
unknown
genbank 28897871 NP_797476.1 337 1153862 1154875
185998 hypothetical VP1098 putative phospholipase C precursor
similar to DBJ:BAB69072.1 (AB066097) percent identity 33 in 295 aa
genbank 28897872 NP_797477.1 442 1154818 1156146
185999 hypothetical VP1099 tRNA-(MS[2]IO[6]A)-hydroxylase
similar to GB:AAF95058.1 (AE004266) percent identity 83 in 255 aa
genbank 28897873 NP_797478.1 256 1156396 1157166
Single chain protein id Protein name Protein type Locus tag Description / User comment Database name Database id Genbank accession Length Start on contig / cds translation End on contig / cds translation
186000 hypothetical VP1100 hypothetical protein
similar to GB:AAF95057.1 (AE004266) percent identity 75 in 254 aa
genbank 28897874 NP_797479.1 254 1157291 1158055


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