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GEO accession:
Sample GSM116928
Query DataSets for GSM116928
Status
Public on Sep 30, 2006
Title
NA11993_Nsp_COMM
Sample type
genomic
Source Name
DNA was obtained from NIGHS Human Genetic Cell Repository
Organism(s)
Homo sapiens
Characteristics
Gender: Female Cell lot number: 4
Biomaterial provider
Coriell NA11993
http://ccr.coriell.org/Sections/Search/Search.aspx?PgId=165&q=NA11993
Extracted molecule
genomic DNA
Label
Biotin
Description
Hapmap samples used for identifying variable copy number regions in the genome
Data processing
Genotyes reported by dynamic modeling algorithm
Submission date
Jun 29, 2006
Contact name
Fan Shen
E-mail(s)
Fan_Shen@affymetrix.com
Phone
408-731-5762
Organization name
Affymetrix, Inc
Street address
3420 Central Expressway
City
Santa Clara
State/province
CA
ZIP/Postal code
95051
Country
USA
Platform ID
GPL3718
Series (1)
GSE5173
Global variation of copy number in the human genome_COMM
Data table header descriptions
ID_REF
Affymetrix probe set ID
VALUE
Genotypes
DETECTION P-VALUE
Detection pValue
MedianS
Median signal
RAS1
Relative allele signal for data in the first probe group
RAS2
Relative allele signal for data in the second probe group
Data table
ID_REF
VALUE
DETECTION P-VALUE
MedianS
RAS1
RAS2
SNP_A-1780520
BB
0.007813
21.259
0.000000
0.000000
SNP_A-1780618
BB
0.007813
27.203
0.000000
0.000000
SNP_A-1780632
AB
0.093750
6.650
0.597077
0.562057
SNP_A-1780654
AA
0.007813
27.252
1.000000
0.986809
SNP_A-4192495
AB
0.187500
2.518
0.291016
0.447232
SNP_A-4192498
AB
0.266602
2.846
0.185984
0.410883
SNP_A-1780732
BB
0.015625
18.022
0.000000
0.000000
SNP_A-1780848
BB
0.250000
0.648
0.000000
0.191725
SNP_A-1780985
AB
0.023438
5.782
0.586806
0.452424
SNP_A-1781022
AA
0.007813
14.582
1.000000
1.000000
SNP_A-1781076
AB
0.007813
11.550
0.527714
0.664545
SNP_A-1781249
AB
0.007813
8.963
0.565678
0.476057
SNP_A-1781276
AA
0.007813
11.620
0.837330
0.966110
SNP_A-1781302
BB
0.007813
11.050
0.090373
0.025979
SNP_A-1781510
BB
0.039063
14.988
0.000000
0.040107
SNP_A-4192564
BB
0.023438
7.907
0.000000
0.185780
SNP_A-1781614
AA
0.007813
23.863
1.000000
0.961464
SNP_A-1781633
AB
0.062500
5.795
0.350400
0.274742
SNP_A-1781764
AB
0.007813
16.128
0.551576
0.376894
SNP_A-1781829
AA
0.007813
15.662
0.997236
0.874502
Total number of rows:
262264
Table truncated, full table size
12976 Kbytes
.
Supplementary file
Size
Download
File type/resource
GSM116928.CEL.gz
42.7 Mb
(ftp)
(http)
CEL
GSM116928.raw.txt.gz
25.8 Mb
(ftp)
(http)
TXT
Raw data provided as supplementary file
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