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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs11404385          
refSNP ID: rs11404385
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:120/129
Map to Genome Build:36.3
Allele
Variation Class:DIP:
deletion/insertion polymorphism
RefSNP Alleles:-/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
NM_004160.3:c.-463+3823_-463+3824insA
NT_010783.14:g.731740_731741insT
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss15289294 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11404385 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss15289294DEVINE_LAB|INDEL_GP34_WGS_429365fwd/B-/Tgagaatgcctgagaatgcctaagtgtgcactttttttttttttttttgagactgagtctt11/13/0311/22/03120Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs11404385|allelePos=401|totalLen=801|taxid=9606|snpclass=2|alleles='-/T'|mol=Genomic|build=120
 CCATTATGCC CAGCTTGTAG TTGTAAATTT AAAGTGAGAC CAGGCGTCGA GGTTGTATGT
 CTTTCTCTAG CCATCATGCA TGCTCAGCTG TGTAGTGCAG GCACAGGATA GATGGAAGGT
 GGATTTGATC AGGGTTTCTG TCACATGAGC ATGACAAAGC CGGAGGACTG CCCTGTGTCT
 GCCTTTGGTT GGGCCTGGGT GTATCTGTGT GCCTTTGTAG ATAAGGGCAG ATGGCACTGT
 CAAGAGGTCT GTGCTACTCT GGGTGTGTCA AAGTGTCCTG TAGCTGTCAA TGGCCACAGC
 TGGGTGTGTT TTTGTGTTCT TGGTGTCTTT TCACGTCTAT GTCCATGTGT TCCTATATGA
 CACAGTCGCT GAGAATGCCT GAGAATGCCT AAGTGTGCAC
 N
 TTTTTTTTTT TTTTTTTGAG ACTGAGTCTT GCTCTGTCAC ACAGGCTGGA GTGCAGTGGT
 GTGATCTTGG CTCACCGCGA CCTCCACCTC CCAGGTTCAG CCTCCCGAGT AGCTGGGATT
 ACAGGTGTCA GCCACCACAC CTGGCTAATT TTTGTATTTT TTTTTTTAGC AGGGACAGGT
 CTTCGCTACG TTGGCCAGGC TGGTCTCAAA CTCCTGACCT CAAGTGATCC GCCCGCCTCA
 GCCTCCCAAA GTGCTGGGAT TATAGGCATG AGCCACCACA CCTGGCCTAT GTGAGTGCAC
 AATTCTGTAT CCAAACGTGT ATGAGTGGAT CTGTGTACCT CTGTACACCT GTATGGTGTA
 CAGGGGCATT CCTCTACGTA CAGATGAGTG TCTGTGTGAC

  GeneView back to top
GeneView via analysis of contig annotation: PYY peptide YY
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
referenceNT_010783->NM_004160
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
referenceNT_010783->NM_004160->NP_004151731740:731741reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs11404385 maps exactly once on NCBI human chromosome 17
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
17NW_001838437.21456062^145606337842265^37842266minus-alt_assembly_8HuRefHuRefview400..400
17NW_926839.167306338786022plusTalt_assembly_1CeleraCeleraview400
17NT_010783.14731740^73174139433461^39433462plus-ref_assemblyreferencereferenceview400..400

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_010783
dbSNP Blast Analysis

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .