Reference SNP(refSNP) Cluster Report: rs4528084

Reference SNP(refSNP) Cluster Report: rs4528084

refSNP ID: rs4528084
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	111/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	A/G
Ancestral Allele:	G
Clinical Association:	unknown

HGVS Names
NM_015176.1:c.268-3397G>A
NT_004559.13:g.516931G>A

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss9877619 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs4528084 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Success Rate
ss6108073	SC_JCM\|NT_004525.12_492156	fwd/T	A/G	tactggtgtttgtggtcatgtgattattca	gactggggcactggttctcaaagtgtggtc	01/10/03	10/10/03	111	Genomic	unknown
ss9877619	BCM_SSAHASNP\|chr1.NT_004525.15_47082	fwd/T	A/G	tactggtgtttgtggtcatgtgattattca	gactggggcactggttctcaaagtgtggtc	06/27/03	05/17/04	116	Genomic	unknown
ss19867115	CSHL-HAPMAP\|CSHL-HuFF-200402.chr1.NT_004559.11_490971	fwd/T	A/G	tactggtgtttgtggtcatgtgattattca	gactggggcactggttctcaaagtgtggtc	02/21/04	03/04/04	120	Genomic	unknown
ss41344765	ABI\|hCV26884500	fwd/T	A/G	tactggtgtttgtggtcatgtgattattca	gactggggcactggttctcaaagtgtggtc	07/16/05	07/17/05	126	Genomic	unknown
ss68794674	PERLEGEN\|PGP13235865	fwd/T	A/G	tactggtgtttgtggtcatgtgattattca	gactggggcactggttctcaaagtgtggtc	01/30/07	03/31/08	127	Genomic	unknown
ss82261173	HGSV\|Cor18555_SNV_20070510.chr1_220621512	fwd/T	A/G	tactggtgtttgtggtcatgtgattattca	gactggggcactggttctcaaagtgtggtc	11/27/07	12/02/07	130	Genomic	unknown

Fasta sequence (Legend)

 CCCCAGTTTT TATTCCCCAG AGGCACCACT TTCAAGTCTT CCGGCTGATT TTCTTCTATT
 TGATATTATC TGTTAACTTC CTAATAAGTT GAGAAGTTAG CCCTGTTGCC CTCATTCCTT
 TCTTTCCTTC AATAACATAA AAGTTTTTTT TTTCCCCACA TGAAGTTCAG TACTGGTGTT
 TGTGGTCATG TGATTATTCA
 R
 GACTGGGGCA CTggttctca aagtgtggtc cagaaacccc agagaggttt ccaggatcct
 gtcacagggt ccataagatg taaagtattt gtgtgtgtgt gtgtgtgtat gtgtgtgtgt
 gtgtgtgtgt gtgtttatgt ttggcacgct tattttttcc acaagtatac atggagtttt
 ccagtagcca catgacgttt gatgacatga tggcatcaca ctgttagcta atgaaacgtg
 cacttgtgtg ttcttgtgtt ttccagaatt ttctgaggta agaatacctc agtcgattga
 atgcagagac aggtatgaaa attgacctgt gttctgttaa accacatatc aaaaagcctt
 gcagaaatgt aaaataaggc caatcactaa atgttttgtt ttggaaaaaa gttacttttc
 gttaaaagca gttacatata ttgatatgta ttgtgtttat GTCTTTGTTT TTTTCAGTAG
 ACACTGAACA AATACTGATA ACTGGTTTAG TTTAGTTAGA AATAGATTCT ACCATATTTT
 AACATATTAT Tggccaagca gggtggctca cctgtaatcc ctgcactttg gggggccaag
 acaggcaaat cacctgaggc caggagttca agaccagcct ggccaacatg gtgaaacccc
 atctctactt agaatgcaaa aattagctgg gcgtggtggc acgcaactgt aatcccagct
 actcgggagg ctgaggcagg agaatggctt gaacctggta gagggaggtt gcagtgaacc
 aagatcacgc cactgcactt caacctgggt gacagcgaaa ctctgtctga aaacaaacaa
 acaaaCATTA TTTATTAGAA ATTACTTCGT ACTTAAAGTT TATTGTGCTT TAATTTTGAA
 ATTGAAAAGA ACAGTTTTCC TTAATACCCT TTTAGGAAGT TA

GeneView

GeneView via analysis of contig annotation: FBXO28 F-box protein 28

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_004559->NM_015176

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_004559->NM_015176->NP_055991	516931	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs4528084 maps exactly once on NCBI human chromosome 1

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
1	NW_001838543.2	3660353	194835577	minus	C	alt_assembly_8	HuRef	HuRef	view	200
1	NW_927128.1	86846	197505676	plus	G	alt_assembly_1	Celera	Celera	view	200
1	NT_004559.13	516931	222381400	plus	G	ref_assembly	reference	reference	view	200

NCBI Resource Links

Submitter-Referenced
GenBank
NT_004559

dbSNP Blast Analysis
GenBank HTGS Finished:
AL390122.16

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	A/A	A/G	G/G	HWP	A	G
ss68794674	HapMap-CEU	European	120	GF	0.517	0.050	0.433		0.542	0.458

	HapMap-HCB	Asian	90	GF	0.556	0.200	0.244		0.656	0.344

	HapMap-JPT	Asian	90	GF	0.733	0.044	0.222		0.756	0.244

	HapMap-YRI	Sub-Saharan African	120	GF	0.117	0.317	0.567		0.275	0.725

ss9877619	HapMap-CEU	European	120	IG	0.133	0.433	0.433	0.752	0.350	0.650

	HapMap-HCB	Asian	90	IG	0.267	0.489	0.244	1.000	0.511	0.489

	HapMap-JPT	Asian	88	IG	0.250	0.500	0.250	1.000	0.500	0.500

	HapMap-YRI	Sub-Saharan African	120	IG	0.033	0.383	0.583	0.479	0.225	0.775

Concordant Genotype	Total Sample	A/A	A/G	G/G
ss68794674	182	36	35	111
ss9877619	182	35	35	111

RefSNP Genotype Summary	Total Individual	A/A	A/G	G/G
rs4528084	270	36	35	111

Discordant Genotypes:
Indiviudal SampleID	SubSNP(ss)	Genotype	Population Handle	Submitter Population	Submitter SampleID	SampleID Alias	Submission Batch	NCBI ProbeID
150	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA10846	CEPH1334.01	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
150	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA10846	CEPH1334.01	chr1-HapMap-CEU
151	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA10847	CEPH1334.02	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
151	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA10847	CEPH1334.02	chr1-HapMap-CEU
157	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12144	CEPH1334.10	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
157	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12144	CEPH1334.10	chr1-HapMap-CEU
159	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12146	CEPH1334.12	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
159	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12146	CEPH1334.12	chr1-HapMap-CEU
161	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA07029	CEPH1340.01	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
161	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA07029	CEPH1340.01	chr1-HapMap-CEU
170	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA07000	CEPH1340.10	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
170	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA07000	CEPH1340.10	chr1-HapMap-CEU
174	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA07048	CEPH1341.01	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
174	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA07048	CEPH1341.01	chr1-HapMap-CEU
184	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA07034	CEPH1341.11	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
184	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA07034	CEPH1341.11	chr1-HapMap-CEU
187	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA06985	CEPH1341.14	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
187	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA06985	CEPH1341.14	chr1-HapMap-CEU
188	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA10851	CEPH1344.01	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
188	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA10851	CEPH1344.01	chr1-HapMap-CEU
203	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA07348	CEPH1345.02	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
203	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA07348	CEPH1345.02	chr1-HapMap-CEU
229	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA10859	CEPH1347.02	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
229	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA10859	CEPH1347.02	chr1-HapMap-CEU
254	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA10856	CEPH1350.01	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
254	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA10856	CEPH1350.01	chr1-HapMap-CEU
255	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA10855	CEPH1350.02	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
255	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA10855	CEPH1350.02	chr1-HapMap-CEU
263	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA11830	CEPH1350.11	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
263	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA11830	CEPH1350.11	chr1-HapMap-CEU
345	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12717	CEPH1358.12	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
345	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12717	CEPH1358.12	chr1-HapMap-CEU
348	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA10860	CEPH1362.01	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
348	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA10860	CEPH1362.01	chr1-HapMap-CEU
362	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA11994	CEPH1362.15	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
362	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA11994	CEPH1362.15	chr1-HapMap-CEU
363	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA11995	CEPH1362.16	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
363	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA11995	CEPH1362.16	chr1-HapMap-CEU
366	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA10863	CEPH1375.02	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
366	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA10863	CEPH1375.02	chr1-HapMap-CEU
373	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12264	CEPH1375.11	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
373	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12264	CEPH1375.11	chr1-HapMap-CEU
399	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA10830	CEPH1408.01	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
399	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA10830	CEPH1408.01	chr1-HapMap-CEU
400	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA10831	CEPH1408.02	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
400	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA10831	CEPH1408.02	chr1-HapMap-CEU
408	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12154	CEPH1408.10	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
408	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12154	CEPH1408.10	chr1-HapMap-CEU
410	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12155	CEPH1408.12	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
410	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12155	CEPH1408.12	chr1-HapMap-CEU
411	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12156	CEPH1408.13	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
411	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12156	CEPH1408.13	chr1-HapMap-CEU
438	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12248	CEPH1416.11	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
438	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12248	CEPH1416.11	chr1-HapMap-CEU
456	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA10838	CEPH1420.01	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
456	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA10838	CEPH1420.01	chr1-HapMap-CEU
457	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA10839	CEPH1420.02	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
457	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA10839	CEPH1420.02	chr1-HapMap-CEU
464	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12003	CEPH1420.09	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
464	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12003	CEPH1420.09	chr1-HapMap-CEU
467	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12006	CEPH1420.12	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
467	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12006	CEPH1420.12	chr1-HapMap-CEU
524	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12740	CEPH1444.02	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
524	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12740	CEPH1444.02	chr1-HapMap-CEU
536	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12751	CEPH1444.14	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
536	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12751	CEPH1444.14	chr1-HapMap-CEU
538	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12753	CEPH1447.02	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
538	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12753	CEPH1447.02	chr1-HapMap-CEU
548	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12763	CEPH1447.12	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
548	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12763	CEPH1447.12	chr1-HapMap-CEU
565	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12801	CEPH1454.01	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
565	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12801	CEPH1454.01	chr1-HapMap-CEU
566	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12802	CEPH1454.02	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
566	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12802	CEPH1454.02	chr1-HapMap-CEU
576	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12812	CEPH1454.12	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
576	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12812	CEPH1454.12	chr1-HapMap-CEU
578	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12814	CEPH1454.14	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
578	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12814	CEPH1454.14	chr1-HapMap-CEU
619	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12873	CEPH1459.10	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
619	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12873	CEPH1459.10	chr1-HapMap-CEU
636	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12891	CEPH1463.15	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
636	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12891	CEPH1463.15	chr1-HapMap-CEU
637	ss9877619	A/G	CSHL-HAPMAP	HapMap-CEU	NA12892	CEPH1463.16	r23_ch1_CEU_illumina:golden_gate_1.0.0	213133
637	ss68794674	A/A	CSHL-HAPMAP	HapMap-CEU	NA12892	CEPH1463.16	chr1-HapMap-CEU
5136	ss9877619	A/G	CSHL-HAPMAP	HapMap-YRI	NA19132	YOR101.01	r23_ch1_YRI_illumina:golden_gate_1.0.0	213133
5136	ss68794674	A/A	CSHL-HAPMAP	HapMap-YRI	NA19132	YOR101.01	chr1-HapMap-YRI
5137	ss9877619	A/G	CSHL-HAPMAP	HapMap-YRI	NA19131	YOR101.02	r23_ch1_YRI_illumina:golden_gate_1.0.0	213133
5137	ss68794674	A/A	CSHL-HAPMAP	HapMap-YRI	NA19131	YOR101.02	chr1-HapMap-YRI
5150	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18529	CH18529	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5150	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18529	CH18529	chr1-HapMap-HCB
5153	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18561	CH18561	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5153	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18561	CH18561	chr1-HapMap-HCB
5158	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18605	CH18605	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5158	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18605	CH18605	chr1-HapMap-HCB
5171	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18563	CH18563	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5171	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18563	CH18563	chr1-HapMap-HCB
5174	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18571	CH18571	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5174	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18571	CH18571	chr1-HapMap-HCB
5177	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18594	CH18594	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5177	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18594	CH18594	chr1-HapMap-HCB
5178	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18622	CH18622	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5178	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18622	CH18622	chr1-HapMap-HCB
5183	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18624	CH18624	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5183	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18624	CH18624	chr1-HapMap-HCB
5185	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18632	CH18632	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5185	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18632	CH18632	chr1-HapMap-HCB
5186	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18582	CH18582	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5186	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18582	CH18582	chr1-HapMap-HCB
5188	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18635	CH18635	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5188	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18635	CH18635	chr1-HapMap-HCB
5191	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18593	CH18593	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5191	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18593	CH18593	chr1-HapMap-HCB
5192	ss9877619	A/G	CSHL-HAPMAP	HapMap-HCB	NA18637	CH18637	r23_ch1_HCB_illumina:golden_gate_1.0.0	213133
5192	ss68794674	A/A	CSHL-HAPMAP	HapMap-HCB	NA18637	CH18637	chr1-HapMap-HCB
5195	ss9877619	G/G	CSHL-HAPMAP	HapMap-JPT	NA18951	JA18951	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5195	ss68794674	A/G	CSHL-HAPMAP	HapMap-JPT	NA18951	JA18951	chr1-HapMap-JPT
5198	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18944	JA18944	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5198	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18944	JA18944	chr1-HapMap-JPT
5199	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18945	JA18945	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5199	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18945	JA18945	chr1-HapMap-JPT
5200	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18949	JA18949	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5200	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18949	JA18949	chr1-HapMap-JPT
5201	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18948	JA18948	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5201	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18948	JA18948	chr1-HapMap-JPT
5202	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18952	JA18952	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5202	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18952	JA18952	chr1-HapMap-JPT
5203	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18956	JA18956	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5203	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18956	JA18956	chr1-HapMap-JPT
5206	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18968	JA18968	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5206	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18968	JA18968	chr1-HapMap-JPT
5209	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18960	JA18960	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5209	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18960	JA18960	chr1-HapMap-JPT
5212	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18965	JA18965	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5212	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18965	JA18965	chr1-HapMap-JPT
5213	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18973	JA18973	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5213	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18973	JA18973	chr1-HapMap-JPT
5214	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18966	JA18966	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5214	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18966	JA18966	chr1-HapMap-JPT
5217	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18976	JA18976	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5217	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18976	JA18976	chr1-HapMap-JPT
5219	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18970	JA18970	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5219	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18970	JA18970	chr1-HapMap-JPT
5220	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18980	JA18980	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5220	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18980	JA18980	chr1-HapMap-JPT
5221	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18995	JA18995	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5221	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18995	JA18995	chr1-HapMap-JPT
5222	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18981	JA18981	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5222	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18981	JA18981	chr1-HapMap-JPT
5224	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18974	JA18974	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5224	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18974	JA18974	chr1-HapMap-JPT
5225	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18987	JA18987	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5225	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18987	JA18987	chr1-HapMap-JPT
5226	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18990	JA18990	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5226	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18990	JA18990	chr1-HapMap-JPT
5229	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA18992	JA18992	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5229	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA18992	JA18992	chr1-HapMap-JPT
5236	ss9877619	A/G	CSHL-HAPMAP	HapMap-JPT	NA19003	JA19003	r23_ch1_JPT_illumina:golden_gate_1.0.0	213133
5236	ss68794674	A/A	CSHL-HAPMAP	HapMap-JPT	NA19003	JA19003	chr1-HapMap-JPT
5245	ss9877619	A/G	CSHL-HAPMAP	HapMap-YRI	NA18858	YOR012.02	r23_ch1_YRI_illumina:golden_gate_1.0.0	213133
5245	ss68794674	A/A	CSHL-HAPMAP	HapMap-YRI	NA18858	YOR012.02	chr1-HapMap-YRI
5250	ss9877619	A/G	CSHL-HAPMAP	HapMap-YRI	NA18521	YOR016.01	r23_ch1_YRI_illumina:golden_gate_1.0.0	213133
5250	ss68794674	A/A	CSHL-HAPMAP	HapMap-YRI	NA18521	YOR016.01	chr1-HapMap-YRI
5251	ss9877619	A/G	CSHL-HAPMAP	HapMap-YRI	NA18523	YOR016.02	r23_ch1_YRI_illumina:golden_gate_1.0.0	213133
5251	ss68794674	A/A	CSHL-HAPMAP	HapMap-YRI	NA18523	YOR016.02	chr1-HapMap-YRI
5257	ss9877619	G/G	CSHL-HAPMAP	HapMap-YRI	NA18852	YOR018.02	r23_ch1_YRI_illumina:golden_gate_1.0.0	213133
5257	ss68794674	A/G	CSHL-HAPMAP	HapMap-YRI	NA18852	YOR018.02	chr1-HapMap-YRI
5259	ss9877619	A/G	CSHL-HAPMAP	HapMap-YRI	NA18857	YOR023.01	r23_ch1_YRI_illumina:golden_gate_1.0.0	213133
5259	ss68794674	A/A	CSHL-HAPMAP	HapMap-YRI	NA18857	YOR023.01	chr1-HapMap-YRI
5261	ss9877619	A/G	CSHL-HAPMAP	HapMap-YRI	NA18856	YOR023.03	r23_ch1_YRI_illumina:golden_gate_1.0.0	213133
5261	ss68794674	A/A	CSHL-HAPMAP	HapMap-YRI	NA18856	YOR023.03	chr1-HapMap-YRI
5267	ss9877619	A/G	CSHL-HAPMAP	HapMap-YRI	NA18913	YOR028.03	r23_ch1_YRI_illumina:golden_gate_1.0.0	213133
5267	ss68794674	A/A	CSHL-HAPMAP	HapMap-YRI	NA18913	YOR028.03	chr1-HapMap-YRI
5280	ss9877619	A/G	CSHL-HAPMAP	HapMap-YRI	NA19173	YOR047.01	r23_ch1_YRI_illumina:golden_gate_1.0.0	213133
5280	ss68794674	A/A	CSHL-HAPMAP	HapMap-YRI	NA19173	YOR047.01	chr1-HapMap-YRI
5286	ss9877619	A/G	CSHL-HAPMAP	HapMap-YRI	NA19211	YOR050.01	r23_ch1_YRI_illumina:golden_gate_1.0.0	213133
5286	ss68794674	A/A	CSHL-HAPMAP	HapMap-YRI	NA19211	YOR050.01	chr1-HapMap-YRI

Genotype data submitted for	270	samples from	270	individuals	Individual with multiple genotypes submission:	270

Validation Summary:

Validation status

Marker displays
Mendelian segregation

PCR results confirmed
in multiple reactions

Homozygotes detected
in individual genotype data

DoubleHit found by: BCM_SSAHASNP, NCBI

UNKNOWN

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Revised: May 25, 2006 1:38 PM .