R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|6599051|emb|CAB63651.1| (AJ251819) 26S proteasome subunit 8 [Fagus
sylvatica]
Length = 418
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 418
0 150 300
Plus Strand HSPs:
Score = 395 (139.0 bits), Expect = 1.0e-35, P = 1.0e-35
Identities = 79/100 (79%), Positives = 86/100 (86%), Frame = +2
Query: 95 VGVEVKHAAEGAP-EENCSAKPTKQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNE 271
+ +E KH E P +E CSAK +KQGEGL+ YY +IHEHQL +RQKTHNLNRLEAQRNE
Sbjct: 1 MAIETKHP-EAVPADETCSAKCSKQGEGLKQYYLQHIHEHQLQVRQKTHNLNRLEAQRNE 59
Query: 272 LNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPE 394
NSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVH E
Sbjct: 60 FNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHSE 100
>gi|11993907|gb|AAG42150.1| (AY011124) 26S proteasome RPT6a subunit [Dactylis
glomerata]
Length = 452
Frame 3 hits (HSPs): ___
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | || 452
0 150 300 450
Plus Strand HSPs:
Score = 334 (117.6 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
Identities = 70/103 (67%), Positives = 82/103 (79%), Frame = +2
Query: 86 MALVGVEVKHAAEGAPEENCSAKPTKQG-EGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQ 262
MA V +++ A ++ SAK + G EGLR YY +IH+ QL +R KTHNLNRLEAQ
Sbjct: 35 MATVAMDISKPPPAAAGDD-SAKGARAGGEGLRQYYLQHIHDLQLQIRTKTHNLNRLEAQ 93
Query: 263 RNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPE 394
RN+LNS+VR LREELQLLQEPGSYVGEVVKVMGK+KVLVKVHPE
Sbjct: 94 RNDLNSKVRALREELQLLQEPGSYVGEVVKVMGKSKVLVKVHPE 137
Score = 47 (16.5 bits), Expect = 1.5e-32, Sum P(2) = 1.5e-32
Identities = 9/11 (81%), Positives = 10/11 (90%), Frame = +3
Query: 390 QKKVLVKVHPE 422
+ KVLVKVHPE
Sbjct: 127 KSKVLVKVHPE 137
>gi|11094194|dbj|BAB17626.1| (AB033537) 26S proteasome regulatory particle
triple-A ATPase subunit6 [Oryza sativa]
>gi|11991116|dbj|BAB19880.1| (AB052887) 26S proteasome ATPase
subunit Rpt6 [Oryza sativa]
Length = 424
Frame 2 hits (HSPs): __________
Frame 1 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | 424
0 150 300
Plus Strand HSPs:
Score = 337 (118.6 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 66/76 (86%), Positives = 71/76 (93%), Frame = +2
Query: 167 GEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEV 346
GEGLR YY +IH+ QL +RQKTHNLNRLEAQRN+LNSRVRMLREELQLLQEPGSYVGEV
Sbjct: 34 GEGLRQYYLQHIHDLQLQIRQKTHNLNRLEAQRNDLNSRVRMLREELQLLQEPGSYVGEV 93
Query: 347 VKVMGKNKVLVKVHPE 394
VKVMGK+KVLVKVHPE
Sbjct: 94 VKVMGKSKVLVKVHPE 109
Score = 36 (12.7 bits), Expect = 1.0e-31, Sum P(2) = 1.0e-31
Identities = 12/27 (44%), Positives = 13/27 (48%), Frame = +1
Query: 73 DRSIDGSGRS*SEACGGGRTGGELLRQ 153
D + GR GGG GGE LRQ
Sbjct: 18 DEAAAAKGRG---GAGGG--GGEGLRQ 39
>gi|6652888|gb|AAF22526.1|AF123395_1 (AF123395) 26S proteasome AAA-ATPase
subunit RPT6a [Arabidopsis thaliana]
Length = 405
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 405
0 150 300
Plus Strand HSPs:
Score = 357 (125.7 bits), Expect = 1.1e-31, P = 1.1e-31
Identities = 73/89 (82%), Positives = 77/89 (86%), Frame = +2
Query: 134 EENCSAK--PTKQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREEL 307
EE C+ K KQGEGL+ YY +IHE Q LRQKT+NLNRLEAQRNELNSRVRMLREEL
Sbjct: 2 EETCNVKGAAAKQGEGLKQYYLQHIHELQRQLRQKTNNLNRLEAQRNELNSRVRMLREEL 61
Query: 308 QLLQEPGSYVGEVVKVMGKNKVLVKVHPE 394
QLLQEPGSYVGEVVKVMGKNKVLVKVHPE
Sbjct: 62 QLLQEPGSYVGEVVKVMGKNKVLVKVHPE 90
>gi|6752880|gb|AAF27916.1|AF220199_1 (AF220199) 26S proteasome regulatory
subunit 8 [Pinus taeda]
Length = 433
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 433
0 150 300
Plus Strand HSPs:
Score = 336 (118.3 bits), Expect = 1.9e-29, P = 1.9e-29
Identities = 68/88 (77%), Positives = 76/88 (86%), Frame = +2
Query: 131 PEENCSAKPTKQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQ 310
P+E S + K GEGLR YY +IH+ QL +RQKTHNLNRLEAQRN+LNS+VR LREELQ
Sbjct: 33 PKE--SNRMVKHGEGLRQYYLQHIHDLQLQVRQKTHNLNRLEAQRNDLNSKVRALREELQ 90
Query: 311 LLQEPGSYVGEVVKVMGKNKVLVKVHPE 394
LLQEPGSYVGEVVKVMGK+KVLVKVHPE
Sbjct: 91 LLQEPGSYVGEVVKVMGKSKVLVKVHPE 118
>gi|1170767|sp|P41836|PRS8_SCHPO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG
(LET1 PROTEIN) >gi|626074|pir||S45176 26S proteinase regulatory
subunit 8 homolog - fission yeast (Schizosaccharomyces pombe)
>gi|406051|gb|AAA61615.1| (U02280) Let1 [Schizosaccharomyces pombe]
>gi|4106689|emb|CAA22628.1| (AL035065) 26s protease regulatory
subunit 8 homolog [Schizosaccharomyces pombe]
Length = 403
Frame 2 hits (HSPs): __________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 403
0 150 300
__________________
Annotated Domains:
BLOCKS BL00674A: AAA-protein family proteins. 144..164
BLOCKS BL00674B: AAA-protein family proteins. 179..200
BLOCKS BL00674C: AAA-protein family proteins. 212..254
BLOCKS BL00674D: AAA-protein family proteins. 272..318
BLOCKS BL00674E: AAA-protein family proteins. 350..369
DOMO DM00654: AAA-PROTEINFAMILY 1..137
DOMO DM00024: AAA-PROTEINFAMILY 139..302
DOMO DM00076: AAA-PROTEINFAMILY 304..380
Entrez np-binding site: ATP (POTENTIAL). 186..193
PFAM AAA: ATPases associated with various cel 181..369
PRODOM PD007448: PRS8(8) O45023(1) 3..67
PRODOM PD001147: PRS6(9) PRS8(8) PRS4(8) 69..127
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 138..332
PRODOM PD000272: FTSH(15) TERA(10) PRS7(8) 339..371
PRODOM PD193372: PRS8_SCHPO 373..402
PROSITE AAA: AAA-protein family signature. 286..304
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 186..193
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 41..62
__________________
Plus Strand HSPs:
Score = 276 (97.2 bits), Expect = 4.2e-23, P = 4.2e-23
Identities = 53/78 (67%), Positives = 63/78 (80%), Frame = +2
Query: 161 KQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVG 340
+ E + YY+ I + +L + QKT NL RLEAQRN LN+RVR+LREE+QLLQEPGSYVG
Sbjct: 11 QSNENIVQYYTQKIQDAELAILQKTQNLRRLEAQRNGLNARVRLLREEIQLLQEPGSYVG 70
Query: 341 EVVKVMGKNKVLVKVHPE 394
EV+K MGKNKVLVKVHPE
Sbjct: 71 EVIKTMGKNKVLVKVHPE 88
>gi|4506213 ref|NP_002796.1| proteasome (prosome, macropain) 26S subunit,
ATPase, 5 [Homo sapiens] >gi|2136322|pir||S60343 Trip1 protein -
human >gi|695370|gb|AAC41735.1| (L38810) thyroid receptor
interactor [Homo sapiens] >gi|1094810|prf||2106382A thyroid hormone
receptor-interacting protein [Homo sapiens]
Length = 406
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 406
0 150 300
Plus Strand HSPs:
Score = 275 (96.8 bits), Expect = 5.4e-23, P = 5.4e-23
Identities = 58/93 (62%), Positives = 69/93 (74%), Frame = +2
Query: 116 AAEGAPEENCSAKPTKQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRML 295
A +G PE+ + K G GLR YY I E QL++ K+ NL RL+AQRNELN++VR+L
Sbjct: 2 ALDG-PEQ-MELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLL 59
Query: 296 REELQLLQEPGSYVGEVVKVMGKNKVLVKVHPE 394
REELQLLQE GSYVGEVV+ M K KVLVKVHPE
Sbjct: 60 REELQLLQEQGSYVGEVVRAMDKKKVLVKVHPE 92
>gi|7110703 ref|NP_032976.1| protease (prosome, macropain) 26S subunit, ATPase
5 [Mus musculus] >gi|1709800|sp|P52915|PRS8_MOUSE 26S PROTEASE
REGULATORY SUBUNIT 8 (MSUG1 PROTEIN) (TAT-BINDING PROTEIN HOMOLOG
10) (TBP10) (P45/SUG) >gi|2137798|pir||S61923 SUG1 protein - mouse
>gi|1165125|emb|CAA90961.1| (Z54219) mSUG1 protein [Mus musculus]
>gi|1262433|emb|CAA61863.1| (X89718) 26S protease subunit [Sus
scrofa] >gi|1395177|dbj|BAA11938.1| (D83521) proteasomal ATPase
(rat SUG1) [Rattus norvegicus] >gi|2564003|dbj|BAA22933.1|
(AB000491) proteasome p45/SUG [Rattus norvegicus]
>gi|3193258|gb|AAC19266.1| (AF069053) proteasome subunit SUG1 [Bos
taurus]
Length = 406
Frame 2 hits (HSPs): ____________
__________________________________________________
Database sequence: | | | | 406
0 150 300
Plus Strand HSPs:
Score = 275 (96.8 bits), Expect = 5.4e-23, P = 5.4e-23
Identities = 58/93 (62%), Positives = 69/93 (74%), Frame = +2
Query: 116 AAEGAPEENCSAKPTKQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRML 295
A +G PE+ + K G GLR YY I E QL++ K+ NL RL+AQRNELN++VR+L
Sbjct: 2 ALDG-PEQ-MELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLL 59
Query: 296 REELQLLQEPGSYVGEVVKVMGKNKVLVKVHPE 394
REELQLLQE GSYVGEVV+ M K KVLVKVHPE
Sbjct: 60 REELQLLQEQGSYVGEVVRAMDKKKVLVKVHPE 92
>gi|1709799|sp|P54814|PRS8_MANSE 26S PROTEASE REGULATORY SUBUNIT 8 (18-56
PROTEIN) >gi|1167963|gb|AAC46996.1| (U43728) 18-56 protein [Manduca
sexta]
Length = 402
Frame 2 hits (HSPs): __________
Annotated Domains: ________________ _________________________________
__________________________________________________
Database sequence: | | | | 402
0 150 300
__________________
Annotated Domains:
BLOCKS BL00674A: AAA-protein family proteins. 144..164
BLOCKS BL00674B: AAA-protein family proteins. 179..200
BLOCKS BL00674C: AAA-protein family proteins. 212..254
BLOCKS BL00674D: AAA-protein family proteins. 271..317
BLOCKS BL00674E: AAA-protein family proteins. 349..368
Entrez np-binding site: ATP (POTENTIAL). 186..193
PFAM AAA: ATPases associated with various cel 181..368
PRODOM PD007448: PRS8(8) O45023(1) 3..67
PRODOM PD001147: PRS6(9) PRS8(8) PRS4(8) 69..127
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 138..331
PRODOM PD000272: FTSH(15) TERA(10) PRS7(8) 338..370
PRODOM PD006796: PRS8(7) O43208(1) O45023(1) 372..401
PROSITE AAA: AAA-protein family signature. 285..303
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 186..193
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 41..62
__________________
Plus Strand HSPs:
Score = 272 (95.7 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 55/77 (71%), Positives = 63/77 (81%), Frame = +2
Query: 164 QGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 343
+GEG R YY I E QL++ +K+ NL RL+AQRNELN++VRMLREELQLLQE GSYVGE
Sbjct: 12 KGEGFRPYYITKIEELQLIVAEKSQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGE 71
Query: 344 VVKVMGKNKVLVKVHPE 394
VVK M K KVLVKVHPE
Sbjct: 72 VVKPMDKKKVLVKVHPE 88
>gi|12740152 ref|XP_008254.2| proteasome (prosome, macropain) 26S subunit,
ATPase, 5 [Homo sapiens] >gi|1262435|emb|CAA61864.1| (X89719) put.
26S protease subunit [Sus scrofa]
Length = 398
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 398
0 150 300
Plus Strand HSPs:
Score = 272 (95.7 bits), Expect = 1.1e-22, P = 1.1e-22
Identities = 54/78 (69%), Positives = 62/78 (79%), Frame = +2
Query: 161 KQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVG 340
K G GLR YY I E QL++ K+ NL RL+AQRNELN++VR+LREELQLLQE GSYVG
Sbjct: 7 KAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVG 66
Query: 341 EVVKVMGKNKVLVKVHPE 394
EVV+ M K KVLVKVHPE
Sbjct: 67 EVVRAMDKKKVLVKVHPE 84
>gi|3122626|sp|O18413|PRS8_DROME 26S PROTEASE REGULATORY SUBUNIT 8
>gi|2245467|gb|AAC48284.1| (U97538) DUG [Drosophila melanogaster]
Length = 405
Frame 2 hits (HSPs): ___________
Annotated Domains: ________________ _________________________________
__________________________________________________
Database sequence: | | | | 405
0 150 300
__________________
Annotated Domains:
BLOCKS BL00674A: AAA-protein family proteins. 147..167
BLOCKS BL00674B: AAA-protein family proteins. 182..203
BLOCKS BL00674C: AAA-protein family proteins. 215..257
BLOCKS BL00674D: AAA-protein family proteins. 274..320
BLOCKS BL00674E: AAA-protein family proteins. 352..371
Entrez np-binding site: ATP (POTENTIAL). 189..196
PFAM AAA: ATPases associated with various cel 184..371
PRODOM PD007448: PRS8(8) O45023(1) 6..70
PRODOM PD001147: PRS6(9) PRS8(8) PRS4(8) 72..130
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 141..334
PRODOM PD000272: FTSH(15) TERA(10) PRS7(8) 341..373
PRODOM PD006796: PRS8(7) O43208(1) O45023(1) 375..404
PROSITE AAA: AAA-protein family signature. 288..306
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 189..196
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 44..65
__________________
Plus Strand HSPs:
Score = 271 (95.4 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 55/77 (71%), Positives = 62/77 (80%), Frame = +2
Query: 164 QGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 343
+GEG R YY I E QL++ +K NL RL+AQRNELN++VRMLREELQLLQE GSYVGE
Sbjct: 15 KGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGE 74
Query: 344 VVKVMGKNKVLVKVHPE 394
VVK M K KVLVKVHPE
Sbjct: 75 VVKPMDKKKVLVKVHPE 91
>gi|2815905|gb|AAC63219.1| (AF043734) Pros45 proteosome subunit homolog
[Drosophila melanogaster] >gi|7295522|gb|AAF50835.1| (AE003568)
Pros45 gene product [Drosophila melanogaster]
Length = 405
Frame 2 hits (HSPs): ___________
__________________________________________________
Database sequence: | | | | 405
0 150 300
Plus Strand HSPs:
Score = 271 (95.4 bits), Expect = 1.6e-22, P = 1.6e-22
Identities = 55/77 (71%), Positives = 62/77 (80%), Frame = +2
Query: 164 QGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGE 343
+GEG R YY I E QL++ +K NL RL+AQRNELN++VRMLREELQLLQE GSYVGE
Sbjct: 15 KGEGFRSYYIQKIEELQLVVAEKHQNLRRLQAQRNELNAKVRMLREELQLLQEQGSYVGE 74
Query: 344 VVKVMGKNKVLVKVHPE 394
VVK M K KVLVKVHPE
Sbjct: 75 VVKPMDKKKVLVKVHPE 91
>gi|1346812|sp|P47210|PRS8_HUMAN 26S PROTEASE REGULATORY SUBUNIT 8 (PROTEASOME
SUBUNIT P45) (THYROID HORMONE RECEPTOR INTERACTING PROTEIN 1)
(TRIP1) >gi|2136007|pir||I53510 proteasome subunit p45 - human
>gi|7435734|pir||S65536 26S proteasome chain p45 - human
>gi|976227|dbj|BAA07919.1| (D44467) 26S proteasome subunit p45
[Homo sapiens] >gi|1096205|prf||2111282A 26S proteasome [Homo
sapiens]
Length = 406
Frame 2 hits (HSPs): ____________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | 406
0 150 300
__________________
Annotated Domains:
BLOCKS BL00674A: AAA-protein family proteins. 148..168
BLOCKS BL00674B: AAA-protein family proteins. 183..204
BLOCKS BL00674C: AAA-protein family proteins. 216..258
BLOCKS BL00674D: AAA-protein family proteins. 275..321
BLOCKS BL00674E: AAA-protein family proteins. 353..372
DOMO DM00654: AAA-PROTEINFAMILY 20..141
DOMO DM00024: AAA-PROTEINFAMILY 143..305
DOMO DM00076: AAA-PROTEINFAMILY 307..383
Entrez np-binding site: ATP (POTENTIAL). 190..197
PFAM AAA: ATPases associated with various cel 185..372
PRODOM PD007448: PRS8(8) O45023(1) 7..71
PRODOM PD001147: PRS6(9) PRS8(8) PRS4(8) 73..131
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 142..335
PRODOM PD000272: FTSH(15) TERA(10) PRS7(8) 342..374
PRODOM PD006796: PRS8(7) O43208(1) O45023(1) 376..405
PROSITE AAA: AAA-protein family signature. 289..307
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 190..197
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 45..66
__________________
Plus Strand HSPs:
Score = 270 (95.0 bits), Expect = 2.2e-22, P = 2.2e-22
Identities = 57/93 (61%), Positives = 68/93 (73%), Frame = +2
Query: 116 AAEGAPEENCSAKPTKQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRML 295
A +G PE+ + K G GLR YY I E QL++ K+ NL RL+AQRNELN++VR+L
Sbjct: 2 ALDG-PEQ-MELEEGKAGSGLRQYYLSKIEELQLIVNDKSQNLRRLQAQRNELNAKVRLL 59
Query: 296 REELQLLQEPGSYVGEVVKVMGKNKVLVKVHPE 394
R ELQLLQE GSYVGEVV+ M K KVLVKVHPE
Sbjct: 60 RRELQLLQEQGSYVGEVVRAMDKKKVLVKVHPE 92
>gi|3041724|sp|P46470|PRS8_XENLA 26S PROTEASE REGULATORY SUBUNIT 8 (SUG1
HOMOLOG) (XSUG1) >gi|1877414|emb|CAA57512.1| (X81986) XSUG1
[Xenopus laevis]
Length = 461
Frame 2 hits (HSPs): __________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 461
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00674A: AAA-protein family proteins. 143..163
BLOCKS BL00674B: AAA-protein family proteins. 178..199
BLOCKS BL00674C: AAA-protein family proteins. 211..253
BLOCKS BL00674D: AAA-protein family proteins. 269..315
BLOCKS BL00674E: AAA-protein family proteins. 347..366
Entrez np-binding site: ATP (POTENTIAL). 185..192
PFAM AAA: ATPases associated with various cel 180..366
PRODOM PD007448: PRS8(8) O45023(1) 2..66
PRODOM PD001147: PRS6(9) PRS8(8) PRS4(8) 68..126
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 137..329
PRODOM PD000272: FTSH(15) TERA(10) PRS7(8) 336..368
PRODOM PD006796: PRS8(7) O43208(1) O45023(1) 370..399
PRODOM PD094486: PRS8_XENLA 401..460
PROSITE AAA: AAA-protein family signature. 283..301
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 185..192
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 40..61
__________________
Plus Strand HSPs:
Score = 265 (93.3 bits), Expect = 1.9e-21, P = 1.9e-21
Identities = 53/86 (61%), Positives = 64/86 (74%), Frame = +2
Query: 137 ENCSAKPTKQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLL 316
E ++ G GLR YY I + QL++ K+ NL RL+AQRNELN++VR+LREELQLL
Sbjct: 2 EQMEMDESRGGTGLRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 61
Query: 317 QEPGSYVGEVVKVMGKNKVLVKVHPE 394
QE GSYVGEVV+ M K KVLVKVHPE
Sbjct: 62 QEQGSYVGEVVRAMDKKKVLVKVHPE 87
>gi|2492521|sp|Q25544|PRS8_NAEFO 26S PROTEASE REGULATORY SUBUNIT 8 HOMOLOG
(TAT-BINDING PROTEIN HOMOLOG) >gi|1353667|gb|AAB01762.1| (U41812)
Tat-binding protein homolog [Naegleria fowleri]
Length = 414
Frame 2 hits (HSPs): _________
Annotated Domains: _________________________________________________
__________________________________________________
Database sequence: | | | | 414
0 150 300
__________________
Annotated Domains:
BLOCKS BL00674A: AAA-protein family proteins. 155..175
BLOCKS BL00674B: AAA-protein family proteins. 190..211
BLOCKS BL00674C: AAA-protein family proteins. 223..265
BLOCKS BL00674D: AAA-protein family proteins. 283..329
BLOCKS BL00674E: AAA-protein family proteins. 361..380
Entrez np-binding site: ATP (POTENTIAL). 197..204
PFAM AAA: ATPases associated with various cel 192..380
PRODOM PD007448: PRS8(8) O45023(1) 15..78
PRODOM PD001147: PRS6(9) PRS8(8) PRS4(8) 80..138
PRODOM PD000092: LON(19) CLPB(18) FTSH(17) 145..343
PRODOM PD000272: FTSH(15) TERA(10) PRS7(8) 350..382
PRODOM PD006796: PRS8(7) O43208(1) O45023(1) 384..413
PROSITE AAA: AAA-protein family signature. 297..315
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 197..204
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 52..73
__________________
Plus Strand HSPs:
Score = 249 (87.7 bits), Expect = 7.0e-20, P = 7.0e-20
Identities = 49/74 (66%), Positives = 59/74 (79%), Frame = +2
Query: 173 GLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVK 352
GL++YY I E +++LR K NL RL+AQRNELN RVR L+EELQ LQEPGS+VGEVVK
Sbjct: 26 GLKNYYIAKIQEKEIVLRDKIENLRRLQAQRNELNGRVRSLKEELQQLQEPGSHVGEVVK 85
Query: 353 VMGKNKVLVKVHPE 394
VMGK KVL+K+ E
Sbjct: 86 VMGKKKVLIKISQE 99
>gi|7301963|gb|AAF57069.1| (AE003774) CG2241 gene product [Drosophila
melanogaster]
Length = 399
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 399
0 150 300
Plus Strand HSPs:
Score = 243 (85.5 bits), Expect = 2.8e-19, P = 2.8e-19
Identities = 49/75 (65%), Positives = 57/75 (76%), Frame = +2
Query: 170 EGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVV 349
EG YY+ I E Q + ++ NL RL+AQRNELN +VR+LREELQLLQE GSY+ EVV
Sbjct: 12 EGFHSYYTQKISELQFTVNERQKNLLRLQAQRNELNLKVRLLREELQLLQEQGSYIAEVV 71
Query: 350 KVMGKNKVLVKVHPE 394
K M KNKVLVKVHPE
Sbjct: 72 KPMDKNKVLVKVHPE 86
>gi|6321390 ref|NP_011467.1| ATPase; Rpt6p [Saccharomyces cerevisiae]
>gi|1709801|sp|Q01939|PRS8_YEAST 26S PROTEASE REGULATORY SUBUNIT 8
HOMOLOG (SUG1 PROTEIN) (CIM3 PROTEIN) (TAT-BINDING PROTEIN TBY1)
>gi|2133183|pir||S64052 26S proteasome regulatory particle chain
RPT6 - yeast (Saccharomyces cerevisiae) >gi|172878|gb|AAA35138.1|
(L01626) Tat-binding protein [Saccharomyces cerevisiae]
>gi|1322539|emb|CAA96750.1| (Z72570) ORF YGL048c [Saccharomyces
cerevisiae]
Length = 405
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 405
0 150 300
Plus Strand HSPs:
Score = 233 (82.0 bits), Expect = 4.1e-18, P = 4.1e-18
Identities = 43/74 (58%), Positives = 57/74 (77%), Frame = +2
Query: 173 GLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVK 352
G++ Y+ I E +L +R KT N+ RLEAQRN LN +VR +++EL+LLQEPGSYVGEV+K
Sbjct: 18 GIKPYFEQKIQETELKIRSKTENVRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIK 77
Query: 353 VMGKNKVLVKVHPE 394
++ KVLVKV PE
Sbjct: 78 IVSDKKVLVKVQPE 91
>gi|464863|sp|P34124|PRS8_DICDI 26S PROTEASE REGULATORY SUBUNIT 8 (TAT-BINDING
PROTEIN HOMOLOG 10) >gi|422297|pir||JN0610 probable transcription
factor DdTBP10 - slime mold (Dictyostelium discoideum) (fragment)
>gi|290057|gb|AAA33254.1| (L16579) HIV1 TAT-binding protein
[Dictyostelium discoideum]
Length = 389
Frame 2 hits (HSPs): __________
Annotated Domains: ____ _________________________
__________________________________________________
Database sequence: | | | | 389
0 150 300
__________________
Annotated Domains:
Entrez np-binding site: ATP (POTENTIAL). 172..179
PFAM AAA: ATPases associated with various cel 167..355
PROSITE AAA: AAA-protein family signature. 272..290
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 172..179
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 27..48
__________________
Plus Strand HSPs:
Score = 230 (81.0 bits), Expect = 7.3e-18, P = 7.3e-18
Identities = 46/69 (66%), Positives = 56/69 (81%), Frame = +2
Query: 188 YSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKN 367
Y I E ++ + +K +L RLEAQRNELN+RVRML+EELQLL PGS+V EVVK+MGKN
Sbjct: 6 YCSKIEELEIKVNEKAQDLRRLEAQRNELNNRVRMLKEELQLLTNPGSHVAEVVKLMGKN 65
Query: 368 KVLVKVHPE 394
KVLVKV+PE
Sbjct: 66 KVLVKVNPE 74
>gi|7510031|pir||T27048 hypothetical protein Y49E10.1 - Caenorhabditis elegans
>gi|3979998|emb|CAB11558.1| (Z98866) contains similarity to Pfam
domain: PF00004 (ATPases associated with various cellular
activities (AAA)), Score=327.8, E-value=4.1e-95, N=1~cDNA EST
yk78f3.3 comes from this gene~cDNA EST yk91c7.3 comes from this
gene~cDNA EST yk78f3.5 comes fr>
Length = 416
Frame 2 hits (HSPs): _____________
__________________________________________________
Database sequence: | | | | 416
0 150 300
Plus Strand HSPs:
Score = 231 (81.3 bits), Expect = 7.6e-18, P = 7.6e-18
Identities = 49/95 (51%), Positives = 65/95 (68%), Frame = +2
Query: 116 AAEGAPEENCSAKPTKQGEG--LRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVR 289
A+ P + + K T++ + LR Y+S + + Q + K+ N+ RL+AQRNELN++VR
Sbjct: 8 ASSADPSKPTAQKLTEESDEKTLRKYFSTKVDDAQQKVADKSQNVRRLQAQRNELNTKVR 67
Query: 290 MLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPE 394
ML+EELQ L E GSYVGEV K M K KVLVKVHPE
Sbjct: 68 MLKEELQQLHEQGSYVGEVSKAMDKKKVLVKVHPE 102
>gi|228885|prf||1813279A SUG1 gene [Saccharomyces cerevisiae]
Length = 400
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 400
0 150 300
Plus Strand HSPs:
Score = 228 (80.3 bits), Expect = 1.4e-17, P = 1.4e-17
Identities = 43/74 (58%), Positives = 56/74 (75%), Frame = +2
Query: 173 GLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVK 352
G++ Y+ I E +L +R KT N RLEAQRN LN +VR +++EL+LLQEPGSYVGEV+K
Sbjct: 18 GIKPYFEQKIQETELKIRSKTENGRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIK 77
Query: 353 VMGKNKVLVKVHPE 394
++ KVLVKV PE
Sbjct: 78 IVSDKKVLVKVQPE 91
>gi|4591|emb|CAA47023.1| (X66400) sug1 [Saccharomyces cerevisiae]
>gi|1195528|gb|AAB35417.1| 26S protease subunit S8=SUG1 homolog
[human, erythrocytes, Peptide, 405 aa]
Length = 405
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 405
0 150 300
Plus Strand HSPs:
Score = 228 (80.3 bits), Expect = 1.5e-17, P = 1.5e-17
Identities = 43/74 (58%), Positives = 56/74 (75%), Frame = +2
Query: 173 GLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVK 352
G++ Y+ I E +L +R KT N RLEAQRN LN +VR +++EL+LLQEPGSYVGEV+K
Sbjct: 18 GIKPYFEQKIQETELKIRSKTENGRRLEAQRNALNDKVRFIKDELRLLQEPGSYVGEVIK 77
Query: 353 VMGKNKVLVKVHPE 394
++ KVLVKV PE
Sbjct: 78 IVSDKKVLVKVQPE 91
>gi|1078797|pir||S51042 tat-binding protein homolog - malaria parasite
(Plasmodium falciparum)
Length = 435
Frame 2 hits (HSPs): __________
Annotated Domains: _____________________________________________
__________________________________________________
Database sequence: | | | | 435
0 150 300
__________________
Annotated Domains:
DOMO DM00654: AAA-PROTEINFAMILY 32..171
DOMO DM00024: AAA-PROTEINFAMILY 173..334
DOMO DM00076: AAA-PROTEINFAMILY 336..412
Entrez domain: FtsH/SEC18/CDC48-type ATP-bindin 193..402
PROSITE AAA: AAA-protein family signature. 318..336
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 220..227
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 75..96
PROSITE RIBOSOMAL_S2_1: Ribosomal protein S2 sig 93..104
__________________
Plus Strand HSPs:
Score = 228 (80.3 bits), Expect = 1.9e-17, P = 1.9e-17
Identities = 47/87 (54%), Positives = 63/87 (72%), Frame = +2
Query: 137 ENCSAKPTKQGE-GLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQL 313
+N SA +Q + G++ YY I E++ ++ +K N RLEAQRNELN+RVR L +E+Q
Sbjct: 36 KNSSALNEEQVQSGIKRYYELKIEEYESIINKKLQNKKRLEAQRNELNARVRELCDEIQY 95
Query: 314 LQEPGSYVGEVVKVMGKNKVLVKVHPE 394
L E SYVGE+VK MGKNKVLVK++PE
Sbjct: 96 LLEAASYVGEIVKPMGKNKVLVKINPE 122
>gi|11265288|pir||T43799 proteasome protein p45/SUG [imported] - rat (fragment)
>gi|2564007|dbj|BAA22935.1| (AB000493) proteasome p45/SUG [Rattus
norvegicus]
Length = 374
Frame 2 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | 374
0 150 300
Plus Strand HSPs:
Score = 225 (79.2 bits), Expect = 2.2e-17, P = 2.2e-17
Identities = 44/60 (73%), Positives = 52/60 (86%), Frame = +2
Query: 215 LLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPE 394
L++ K+ NL RL+AQRNELN++VR+LREELQLLQE GSYVGEVV+ M K KVLVKVHPE
Sbjct: 1 LIVNDKSQNLRRLQAQRNELNAKVRLLREELQLLQEQGSYVGEVVRAMDKKKVLVKVHPE 60
>gi|11265292|pir||T49402 probable 26S proteinase subunit (SUG1) protein
[imported] - Neurospora crassa >gi|7800937|emb|CAB91305.1|
(AL355928) probable 26S protease subunit (SUG1) protein [Neurospora
crassa]
Length = 389
Frame 2 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | 389
0 150 300
Plus Strand HSPs:
Score = 220 (77.4 bits), Expect = 9.8e-17, P = 9.8e-17
Identities = 47/73 (64%), Positives = 55/73 (75%), Frame = +2
Query: 176 LRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKV 355
L +YY + I +L + + L RLEAQRN+ NSRVR+LREEL LLQ+PGSYVGEVVKV
Sbjct: 3 LDNYYHNKIEAMKLEILKGQAVLRRLEAQRNDYNSRVRLLREELGLLQQPGSYVGEVVKV 62
Query: 356 MGKNKVLVKVHPE 394
M KVLVKVHPE
Sbjct: 63 MSTKKVLVKVHPE 75
>gi|1079323|pir||S52928 XSUG1 protein - African clawed frog
Length = 283
Frame 2 hits (HSPs): ____________
Frame 1 hits (HSPs): ____
Annotated Domains: _____ __
__________________________________________________
Database sequence: | | | | | | | 283
0 50 100 150 200 250
__________________
Annotated Domains:
PROSITE ATP_GTP_A: ATP/GTP-binding site motif A 185..192
PROSITE LEUCINE_ZIPPER: Leucine zipper pattern. 40..61
__________________
Plus Strand HSPs:
Score = 174 (61.3 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 35/64 (54%), Positives = 45/64 (70%), Frame = +2
Query: 137 ENCSAKPTKQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLL 316
E ++ G GLR YY I + QL++ K+ NL RL+AQRNELN++VR+LREELQLL
Sbjct: 2 EQMEMDESRGGTGLRQYYLSKIEDLQLVVNDKSQNLRRLQAQRNELNAKVRLLREELQLL 61
Query: 317 QEPG 328
QE G
Sbjct: 62 QEQG 65
Score = 47 (16.5 bits), Expect = 1.5e-15, Sum P(2) = 1.5e-15
Identities = 11/19 (57%), Positives = 13/19 (68%), Frame = +1
Query: 343 SCQSHGQEQSPCQGPPRRK 399
S QS+GQE+S QG P K
Sbjct: 71 SGQSYGQEESVGQGSPGGK 89
>gi|9651743|gb|AAF91248.1|AF227504_1 (AF227504) proteasome regulatory ATPase
subunit 6 [Trypanosoma brucei]
Length = 408
Frame 2 hits (HSPs): _________
__________________________________________________
Database sequence: | | | | 408
0 150 300
Plus Strand HSPs:
Score = 170 (59.8 bits), Expect = 3.8e-11, P = 3.8e-11
Identities = 38/67 (56%), Positives = 46/67 (68%), Frame = +2
Query: 185 YYSHNIHEHQLLLRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGK 364
Y+ I E + ++ N RLEAQRNELN RVR L+EE+QLLQE GS V +VV+VM K
Sbjct: 22 YFLQKIQELRAQEKRLQDNYMRLEAQRNELNRRVRHLKEEVQLLQESGSIVADVVRVMSK 81
Query: 365 NKVLVKV 385
KVLV V
Sbjct: 82 GKVLVNV 88
>gi|7504439|pir||T33633 hypothetical protein F56F11.4 - Caenorhabditis elegans
>gi|3790757|gb|AAC71778.1| (AF099922) similar to the AAA family of
ATPases; most similar to 26S protease regulatory subunit 8
[Caenorhabditis elegans]
Length = 443
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 443
0 150 300
Plus Strand HSPs:
Score = 160 (56.3 bits), Expect = 5.6e-10, P = 5.6e-10
Identities = 32/56 (57%), Positives = 42/56 (75%), Frame = +2
Query: 227 QKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVKVHPE 394
+K+ N+ RL AQ+ ELN +VR+L+EE+ L E GS+VGEV K M K KVLVK HP+
Sbjct: 74 EKSINVRRLMAQQKELNGKVRLLKEEISHLHEQGSHVGEVCKAMDKKKVLVKNHPD 129
>gi|687939|gb|AAB31644.1| PA700 subunit p45=ATP-dependent 20 S proteasome
activator [cattle, red blood cells, Peptide Partial, 20 aa, segment
1 of 4]
Length = 20
Frame 2 hits (HSPs): __________________________________________________
__________________________________________________
Database sequence: | | 20
0
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 0.0045, P = 0.0045
Identities = 18/20 (90%), Positives = 19/20 (95%), Frame = +2
Query: 290 MLREELQLLQEPGSYVGEVV 349
+LREELQLLQE GSYVGEVV
Sbjct: 1 LLREELQLLQEQGSYVGEVV 20
>gi|3928921|gb|AAC79724.1| (AF105060) FlaG [Riftia pachyptila endosymbiont]
Length = 115
Frame 2 hits (HSPs): ____________________________________
__________________________________________________
Database sequence: | | | | 115
0 50 100
Plus Strand HSPs:
Score = 83 (29.2 bits), Expect = 0.019, P = 0.019
Identities = 23/81 (28%), Positives = 42/81 (51%), Frame = +2
Query: 161 KQGEGLRHYYSHNIHEHQLLLRQKTH-NLNRLEAQRNELNSRVRMLREELQLL--QEPGS 331
+ E R NI HQ +++ +L RLE ELN +V+ + LQ +E G
Sbjct: 26 RPAEAARQVAERNISIHQDQAEEESQGSLERLEKMVEELNQKVQQQKRSLQFSVDEESGK 85
Query: 332 YVGEVVKVMGKNKVLVKVHPEE 397
+ +V+ + ++++L ++ PEE
Sbjct: 86 TIVKVID-LDRDEILRQIPPEE 106
>gi|11289766|pir||T45044 hypothetical protein Y39B6B.r [imported] -
Caenorhabditis elegans >gi|6434458|emb|CAB60923.1| (AL132896)
predicted using Genefinder; preliminary prediction [Caenorhabditis
elegans]
Length = 221
Frame 2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | | 221
0 50 100 150 200
Plus Strand HSPs:
Score = 87 (30.6 bits), Expect = 0.29, P = 0.25
Identities = 37/107 (34%), Positives = 57/107 (53%), Frame = +2
Query: 47 EANQIERRS-IDRSMALVGVEVKHAAEGAPEENCSAKPT--KQGEGLRHYYSHNIHEHQL 217
E ++ E +S +D + L G+ KH + + + + S +QG GL Y I
Sbjct: 84 EQSRQEMQSLVDSVLFLSGL-AKHYPKESKQFSDSLFELLREQGAGLDPEYFELITNFWA 142
Query: 218 LLRQKTHNLNRLEAQRNELNS-RVRMLR-EELQ-LLQEPGSYVGEVVK 352
LLRQ+ L+ +N NS R R L+ ++LQ LLQ+P SYV EV++
Sbjct: 143 LLRQQKLQFISLKTGKNSGNSNRNRFLKLQDLQQLLQQPVSYVKEVLQ 190
>gi|84841|pir||S01718 Balbiani ring protein 1-gamma (clone pCp28) - midge
(Chironomus pallidivittatus) (fragment) >gi|683548|emb|CAA29740.1|
(X06434) gamma protein constant region [Chironomus pallidivittatus]
Length = 79
Frame 1 hits (HSPs): __________________________________________
__________________________________________________
Database sequence: | | | | | 79
0 20 40 60
Plus Strand HSPs:
Score = 69 (24.3 bits), Expect = 0.50, P = 0.40
Identities = 26/74 (35%), Positives = 34/74 (45%), Frame = +1
Query: 172 GPPPLLFSQHPRASAPSPSKDA*PQPS*-GSEKRAQFQGEDAARRITAFAGTRLLCW*SC 348
GP P P S P PSK P+P GS R + + E ARR F+ ++ C C
Sbjct: 14 GPRPSKSGPSPSKSGPRPSKSG-PRPEKCGSAMR-KAEAEKCARRKGRFSASK--C--RC 67
Query: 349 QSHGQEQSPCQGPPR 393
S G+ P + PR
Sbjct: 68 TSAGK---PSKSEPR 79
>gi|200533|gb|AAA39999.1| (M30384) prion protein PrP27-30 [Mus musculus]
Length = 79
Frame -3 hits (HSPs): _____________________
__________________________________________________
Database sequence: | | | | | 79
0 20 40 60
Minus Strand HSPs:
Score = 66 (23.2 bits), Expect = 1.1, P = 0.67
Identities = 15/33 (45%), Positives = 20/33 (60%), Frame = -3
Query: 181 AEALALLGGLGGAILLRCALRRMLHFNSDQSHR 83
A A A++GGLGG +L R M+HF +D R
Sbjct: 29 AAAGAVVGGLGGYMLGSAVSRPMIHFGNDWEDR 61
>gi|224494|prf||1106228A scrapie prion protein [Mus musculus]
Length = 78
Frame -3 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | | 78
0 20 40 60
Minus Strand HSPs:
Score = 66 (23.2 bits), Expect = 1.1, P = 0.67
Identities = 15/33 (45%), Positives = 20/33 (60%), Frame = -3
Query: 181 AEALALLGGLGGAILLRCALRRMLHFNSDQSHR 83
A A A++GGLGG +L R M+HF +D R
Sbjct: 29 AAAGAVVGGLGGYMLGSAVSRPMIHFGNDWEDR 61
>gi|208988|gb|AAA72355.1| (L11614) carrier protein [unidentified cloning
vector]
Length = 45
Frame 2 hits (HSPs): _________________
Frame 1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | 45
0 20 40
Plus Strand HSPs:
Score = 44 (15.5 bits), Expect = 1.3, Sum P(2) = 0.73
Identities = 7/12 (58%), Positives = 8/12 (66%), Frame = +1
Query: 355 HGQEQSPCQGPP 390
HGQ+Q P PP
Sbjct: 17 HGQQQQPAPRPP 28
Score = 36 (12.7 bits), Expect = 1.3, Sum P(2) = 0.73
Identities = 6/16 (37%), Positives = 10/16 (62%), Frame = +2
Query: 149 AKPTKQGEGLRHYYSH 196
+K TK+ L H++ H
Sbjct: 2 SKTTKKFNSLHHHHHH 17
>gi|124727|sp|P24708|INVO_AOTTR INVOLUCRIN >gi|2144795|pir||I36911 involucrin L
- douroucouli >gi|176558|gb|AAA35375.1| (M25313) involucrin (large
allele) [Aotus trivirgatus]
Length = 544
Frame 2 hits (HSPs): __________
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 544
0 150 300 450
__________________
Annotated Domains:
BLOCKS BL00795A: Involucrin proteins. 1..35
BLOCKS BL00795B: Involucrin proteins. 41..80
BLOCKS BL00795C: Involucrin proteins. 485..529
DOMO DM00849: INVOLUCRIN 1..69
DOMO DM00301: INVOLUCRIN 70..106
DOMO DM00922: INVOLUCRIN 108..158
DOMO DM00543: INVOLUCRIN 166..274
DOMO DM00543: INVOLUCRIN 276..400
DOMO DM00543: INVOLUCRIN 401..496
DOMO DM01459: INVOLUCRIN 497..543
PFAM Involucrin: Involucrin repeat 27..36
PFAM Involucrin: Involucrin repeat 71..80
PFAM Involucrin: Involucrin repeat 81..90
PFAM Involucrin: Involucrin repeat 91..100
PFAM Involucrin: Involucrin repeat 103..112
PFAM Involucrin: Involucrin repeat 116..125
PFAM Involucrin: Involucrin repeat 156..165
PFAM Involucrin: Involucrin repeat 166..175
PFAM Involucrin: Involucrin repeat 176..185
PFAM Involucrin: Involucrin repeat 186..195
PFAM Involucrin: Involucrin repeat 196..205
PFAM Involucrin: Involucrin repeat 206..215
PFAM Involucrin: Involucrin repeat 216..225
PFAM Involucrin: Involucrin repeat 226..235
PFAM Involucrin: Involucrin repeat 236..245
PFAM Involucrin: Involucrin repeat 246..255
PFAM Involucrin: Involucrin repeat 256..265
PFAM Involucrin: Involucrin repeat 266..275
PFAM Involucrin: Involucrin repeat 277..284
PFAM Involucrin: Involucrin repeat 285..294
PFAM Involucrin: Involucrin repeat 295..304
PFAM Involucrin: Involucrin repeat 305..314
PFAM Involucrin: Involucrin repeat 315..324
PFAM Involucrin: Involucrin repeat 325..334
PFAM Involucrin: Involucrin repeat 335..344
PFAM Involucrin: Involucrin repeat 345..354
PFAM Involucrin: Involucrin repeat 355..364
PFAM Involucrin: Involucrin repeat 365..374
PFAM Involucrin: Involucrin repeat 375..384
PFAM Involucrin: Involucrin repeat 385..394
PFAM Involucrin: Involucrin repeat 395..404
PFAM Involucrin: Involucrin repeat 405..414
PFAM Involucrin: Involucrin repeat 415..424
PFAM Involucrin: Involucrin repeat 425..434
PFAM Involucrin: Involucrin repeat 435..444
PFAM Involucrin: Involucrin repeat 445..454
PFAM Involucrin: Involucrin repeat 456..463
PFAM Involucrin: Involucrin repeat 464..473
PFAM Involucrin: Involucrin repeat 474..483
PFAM Involucrin: Involucrin repeat 484..493
PFAM Involucrin: Involucrin repeat 494..503
PFAM Involucrin: Involucrin repeat 530..539
PRODOM PD003599: INVO(14) 1..68
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 72..183
PRODOM PD000002: MYSP(25) MYSA(19) INVO(17) 187..395
PRODOM PD001830: HSP1(29) VE2(21) GAG(12) 398..524
PROSITE INVOLUCRIN: Involucrin signature. 1..11
__________________
Plus Strand HSPs:
Score = 84 (29.6 bits), Expect = 3.0, P = 0.95
Identities = 30/103 (29%), Positives = 46/103 (44%), Frame = +2
Query: 104 EVKHAA--EGAPEENCSAKPTKQGEGLRHYYSHNIHEHQLLLRQKTHNLNRLEAQRNELN 277
E KH +GAPE+ C + Q + L+ + EHQ L + +AQR E
Sbjct: 60 EEKHMTIVKGAPEQECEQQQQPQEQKLQQQHWEQDEEHQKA-ENPEQQLKQEKAQR-EKQ 117
Query: 278 SRVRMLREELQLL-QEPGSYVGEVVKVMGKNKVLVKVHPEESPCQ 409
L EE +LL Q+P + + + +G K + PE+ Q
Sbjct: 118 QLQGQLEEEKKLLDQQPDHELAKSDEQLGTKKEQLLEFPEQQEGQ 162
>gi|7435733|pir||G71242 probable 26S proteinase regulatory subunit - Pyrococcus
horikoshii >gi|3256587|dbj|BAA29270.1| (AP000001) 399aa long
hypothetical 26S protease regulatory subunit [Pyrococcus
horikoshii]
Length = 399
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 399
0 150 300
Plus Strand HSPs:
Score = 82 (28.9 bits), Expect = 3.6, P = 0.97
Identities = 15/54 (27%), Positives = 32/54 (59%), Frame = +2
Query: 221 LRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVK 382
+RQ + LEA + L + LR E+ L++P ++ G V++V+ +++ +V+
Sbjct: 26 IRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDEDRAIVQ 79
>gi|1845216|gb|AAC53041.1| (U41183) pre-progrowth hormone releasing factor
[Rattus norvegicus]
Length = 138
Frame 3 hits (HSPs): _______
Frame 2 hits (HSPs): ___________________________
__________________________________________________
Database sequence: | | | | 138
0 50 100
Plus Strand HSPs:
Score = 55 (19.4 bits), Expect = 5.4, Sum P(2) = 1.0
Identities = 11/19 (57%), Positives = 12/19 (63%), Frame = +3
Query: 147 PPSPPSRARASATTILTTS 203
PPSPP R R A I T+S
Sbjct: 21 PPSPPFRVRRHADAIFTSS 39
Score = 51 (18.0 bits), Expect = 5.4, Sum P(2) = 1.0
Identities = 20/72 (27%), Positives = 32/72 (44%), Frame = +2
Query: 212 QLLLRQKTHNL-NRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKN------K 370
QL R+ H + NR + +RN+ R R R ++ E E + V ++
Sbjct: 46 QLYARKLLHEIMNRQQGERNQ-EQRSRFNRHLDRVWAEDKQMALESILVQQRSVPRYLLD 104
Query: 371 VLVKVHPEESPCQ 409
+LV+ HP S Q
Sbjct: 105 ILVETHPNSSAAQ 117
>gi|8096389|dbj|BAA95860.1| (AP002070) hypothetical protein [Oryza sativa]
>gi|8467942|dbj|BAA96566.1| (AP002480) hypothetical protein [Oryza
sativa]
Length = 187
Frame 2 hits (HSPs): ___
Frame 1 hits (HSPs): ____________________________
__________________________________________________
Database sequence: | | | | | 187
0 50 100 150
Plus Strand HSPs:
Score = 70 (24.6 bits), Expect = 5.5, Sum P(2) = 1.0
Identities = 34/102 (33%), Positives = 40/102 (39%), Frame = +1
Query: 109 EACGGGRTGGELLRQAHQAGRGPP--PLLFSQHPRASAPSPSKDA*PQPS*GSEKRAQFQ 282
E G RT GELL + R PP P L S P P S A P S A+
Sbjct: 42 ELLPGVRTAGELLPRRTDCRRDPPGAPTLTSSFPARGRPVSSSPARGLPV-SSFPGARTA 100
Query: 283 GEDAARRITAFAGTRLLCW*--SCQSHGQEQ-----SPCQGPP 390
GE R T + + W S +HG SP +GPP
Sbjct: 101 GELHPRVRTLASSPVVRGWLASSTPAHGVRGWHASFSPARGPP 143
Score = 36 (12.7 bits), Expect = 5.5, Sum P(2) = 1.0
Identities = 6/11 (54%), Positives = 7/11 (63%), Frame = +2
Query: 386 HPEESPCQGPP 418
H SP +GPP
Sbjct: 133 HASFSPARGPP 143
>gi|5853147|gb|AAD54335.1| (AF177293) prion protein [Varecia variegata
variegata]
Length = 124
Frame -3 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | 124
0 50 100
Minus Strand HSPs:
Score = 72 (25.3 bits), Expect = 5.6, P = 1.0
Identities = 21/61 (34%), Positives = 32/61 (52%), Frame = -3
Query: 181 AEALALLGGLGGAILLRCALRRMLHFNSDQSHRSIDRSSF---NLVCFYSID--SNPKSF 17
A A A++GGLGG +L R ++HF +D R + + N V + +D SN SF
Sbjct: 49 AAAGAVVGGLGGYMLGSAMSRPLIHFGNDYEDRYYRENMYRYPNQVYYKPVDQYSNQNSF 108
Query: 16 L 14
+
Sbjct: 109 V 109
>gi|84839|pir||S01717 Balbiani ring protein 1-gamma (clone pCp20) - midge
(Chironomus pallidivittatus) (fragment) >gi|683545|emb|CAA29737.1|
(X06431) gamma protein constant region [Chironomus pallidivittatus]
Length = 95
Frame 1 hits (HSPs): _____________________________________
__________________________________________________
Database sequence: | | | | | | 95
0 20 40 60 80
Plus Strand HSPs:
Score = 66 (23.2 bits), Expect = 5.7, P = 1.0
Identities = 27/77 (35%), Positives = 32/77 (41%), Frame = +1
Query: 172 GPPPLLFSQHPRASAPSPSKDA*PQPS*-GSEKRAQFQGEDAARRITAFAGTRLLCW*SC 348
GP P P S P PSK P+P GS R + + E ARR F + C C
Sbjct: 26 GPRPSKSGPRPSKSGPRPSKSG-PRPEKCGSAMR-KAEAEKCARRKGRFNANK--C--RC 79
Query: 349 QSHGQEQSPCQGPPRRKS 402
S G+ GP KS
Sbjct: 80 TSAGKPSK--SGPRPSKS 95
>gi|2108258|emb|CAA73602.1| (Y13142) extensin [Bromheadia finlaysoniana]
Length = 48
Frame -2 hits (HSPs): _____________________________
__________________________________________________
Database sequence: | | | | 48
0 20 40
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 5.7, P = 1.0
Identities = 11/29 (37%), Positives = 16/29 (55%), Frame = -2
Query: 173 PRPAWWAWRSNSPPVRPPPHASLQLRPEP 87
P P ++ ++S PP PPPH + P P
Sbjct: 3 PPPPYY-YKSPPPPSSPPPHPYYYISPPP 30
>gi|4959575|gb|AAD34398.1|AF134211_1 (AF134211) merD [mercury resistant
bacterium '96 SE13]
Length = 39
Frame -2 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | 39
0 20
Minus Strand HSPs:
Score = 60 (21.1 bits), Expect = 5.7, P = 1.0
Identities = 14/33 (42%), Positives = 20/33 (60%), Frame = -2
Query: 188 SSGGGPRPAWWAWRSNSPPVRPPPHASLQLRPE 90
SS G RP W A + N PP +P H++ ++R E
Sbjct: 1 SSSVGARP-WPASKCNWPPCQPNRHSTRRVRHE 32
>gi|7435747|pir||H75207 26s proteinase regulatory chain 4 PAB2233 - Pyrococcus
abyssi (strain Orsay) >gi|5457620|emb|CAB49111.1| (AJ248283) 26S
protease regulatory subunit 4 [Pyrococcus abyssi]
Length = 399
Frame 2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | 399
0 150 300
Plus Strand HSPs:
Score = 80 (28.2 bits), Expect = 6.5, P = 1.0
Identities = 15/54 (27%), Positives = 31/54 (57%), Frame = +2
Query: 221 LRQKTHNLNRLEAQRNELNSRVRMLREELQLLQEPGSYVGEVVKVMGKNKVLVK 382
+RQ + LEA + L + LR E+ L++P ++ G V++V+ ++ +V+
Sbjct: 26 IRQLELQVRMLEADKERLERELSRLRSEMSRLRQPPAFAGTVIEVLDDDRAIVQ 79
>gi|478030|pir||C49050 T-cell surface glycoprotein CD8 beta-1 chain, membrane
form 4 - human (fragment) >gi|265697|gb|AAB25424.1| CD8 beta chain
isoform m beta3 {alternatively spliced} [human, Peptide Partial, 80
aa]
Length = 80
Frame -3 hits (HSPs): _________________________________________
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
Minus Strand HSPs:
Score = 59 (20.8 bits), Expect = 7.4, P = 1.0
Identities = 22/66 (33%), Positives = 29/66 (43%), Frame = -3
Query: 226 TEKELMLVDVVRIVVAEALALLGGLGGAILLRCALRRM-LHFNSDQSHRSIDRSSFNLVC 50
T+K + + ++VA L LL LG AI L C RR L F I +F C
Sbjct: 1 TQKGPLCSPITGLLVAGVLVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGIS-GTFVPQC 59
Query: 49 FYSIDSN 29
+ SN
Sbjct: 60 LHGYYSN 66
>gi|4406461|gb|AAD19982.1| (AF117311) prion protein [Tursiops truncatus]
Length = 141
Frame -3 hits (HSPs): ______________________
__________________________________________________
Database sequence: | | | | 141
0 50 100
Minus Strand HSPs:
Score = 72 (25.3 bits), Expect = 9.3, P = 1.0
Identities = 21/61 (34%), Positives = 32/61 (52%), Frame = -3
Query: 181 AEALALLGGLGGAILLRCALRRMLHFNSDQSHRSIDRSSF---NLVCFYSID--SNPKSF 17
A A A++GGLGG +L R ++HF SD R + + N V + +D +N SF
Sbjct: 72 AAAGAVVGGLGGYMLGSAMSRPLIHFGSDYEDRYYRENMYRYPNQVYYRPVDQYNNQNSF 131
Query: 16 L 14
+
Sbjct: 132 V 132
>gi|1536841|dbj|BAA13314.1| (D87217) unnamed protein product [Trypanosoma
cruzi]
Length = 72
Frame 2 hits (HSPs): ___________________________________________
__________________________________________________
Database sequence: | | | | | 72
0 20 40 60
Plus Strand HSPs:
Score = 58 (20.4 bits), Expect = 9.6, P = 1.0
Identities = 22/63 (34%), Positives = 31/63 (49%), Frame = +2
Query: 158 TKQGEGLRHYYSHNIHEHQLLLRQK-THNLNRLEAQRNELNSRVRMLREELQLLQEPGSY 334
TK E L SH+ +E LLR+ H+L+R A LNS +L +++ L
Sbjct: 4 TKMVESLLR--SHSSNEFSKLLRKNGLHDLSRDVALCEALNSSQGILEDDVAELASRFES 61
Query: 335 VGEV 346
GEV
Sbjct: 62 TGEV 65
>gi|683547|emb|CAA29739.1| (X06433) gamma protein constant region [Chironomus
pallidivittatus]
Length = 69
Frame 1 hits (HSPs): _______________________________
__________________________________________________
Database sequence: | | | | | 69
0 20 40 60
Plus Strand HSPs:
Score = 58 (20.4 bits), Expect = 9.8, P = 1.0
Identities = 18/44 (40%), Positives = 21/44 (47%), Frame = +1
Query: 172 GPPPLLFSQHPRASAPSPSKDA*PQPS*-GSEKRAQFQGEDAARR 303
GP P P S P PSK P+P GS R + + E ARR
Sbjct: 26 GPRPSKSGPRPSKSGPRPSKSG-PRPEKCGSAMR-KAEAEKCARR 68
>gi|3417546|gb|AAC31796.1| (AF019211) helicase [Hepatitis GB virus C]
Length = 80
Frame -2 hits (HSPs): _________________________
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
Minus Strand HSPs:
Score = 58 (20.4 bits), Expect = 9.8, P = 1.0
Identities = 16/39 (41%), Positives = 20/39 (51%), Frame = -2
Query: 242 GYASFDGEGADARGCC-ENSSGGG-PRPAWWAWRSNSPP 132
G F G G GC E +S PR + AWR++SPP
Sbjct: 5 GEIPFYGHGIPLDGCGPEGTSYSAIPRRSASAWRASSPP 43
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.98
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.330 0.135 0.407
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.319 0.136 0.389
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.335 0.145 0.490
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.357 0.155 0.567
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.338 0.152 0.558
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.333 0.144 0.447
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 140 139 10. 73 3 12 22 0.12 33
30 0.10 36
+2 0 140 139 10. 73 3 12 22 0.12 33
30 0.10 36
+1 0 141 140 10. 73 3 12 22 0.12 33
30 0.11 36
-1 0 141 140 10. 73 3 12 22 0.12 33
30 0.11 36
-2 0 140 140 10. 73 3 12 22 0.12 33
30 0.11 36
-3 0 140 139 10. 73 3 12 22 0.12 33
30 0.10 36
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 4:06 PM CST Feb 28, 2001
Format: BLAST
# of letters in database: 197,782,623
# of sequences in database: 625,274
# of database sequences satisfying E: 48
No. of states in DFA: 578 (57 KB)
Total size of DFA: 168 KB (192 KB)
Time to generate neighborhood: 0.01u 0.00s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 6
Search cpu time: 160.28u 1.17s 161.45t Elapsed: 00:00:32
Total cpu time: 160.29u 1.23s 161.52t Elapsed: 00:00:32
Start: Wed Feb 6 13:37:26 2002 End: Wed Feb 6 13:37:58 2002
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000