R = Retrieve links to Related sequences (neighbors).
Use the 
icon (if present) to retrieve links to the Sequence Retrieval System (SRS).
Use the 
icon (if present) to retrieve links to the Ligand Enzyme and Chemical Compound Database .
Use the 
icon (if present) to retrieve links to the Protein Data Bank database.
>gi|7485040|pir||B71406 hypothetical protein - Arabidopsis thaliana
>gi|2244797|emb|CAB10220.1| (Z97336) hypothetical protein
[Arabidopsis thaliana] >gi|7268146|emb|CAB78483.1| (AL161538)
hypothetical protein [Arabidopsis thaliana]
Length = 277
Frame -2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | 277
0 50 100 150 200 250
Minus Strand HSPs:
Score = 74 (26.0 bits), Expect = 0.45, P = 0.37
Identities = 14/29 (48%), Positives = 18/29 (62%), Frame = -2
Query: 103 SYPGVAMWQFMPPAAVDTSQDHVPRPPVA 17
SY + MW +MP + DTS+D RPP A
Sbjct: 249 SYGYMPMWHYMPQSVRDTSRDQELRPPAA 277
>gi|7839395|gb|AAF70261.1| (AF251009) apoptosis-associated p53-target protein
[Mus musculus]
Length = 71
Frame -1 hits (HSPs): _____________
Frame -3 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | 71
0 20 40 60
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 0.51, Sum P(2) = 0.40
Identities = 6/13 (46%), Positives = 9/13 (69%), Frame = -3
Query: 90 LQCGNSCHLLQWI 52
L+CG +C +WI
Sbjct: 2 LRCGLACERCRWI 14
Score = 36 (12.7 bits), Expect = 0.51, Sum P(2) = 0.40
Identities = 8/18 (44%), Positives = 9/18 (50%), Frame = -1
Query: 56 GYLTGSCSPTTSCLSWHC 3
G+L S TS L W C
Sbjct: 34 GWLQSSNHIQTSSLWWRC 51
>gi|7489428|pir||T06199 probable lipid transfer protein - barley
>gi|1848225|gb|AAB47967.1| (U88090) nonspecific lipid transfer
protein [Hordeum vulgare]
Length = 96
Frame -1 hits (HSPs): ______________
__________________________________________________
Database sequence: | | | | | | 96
0 20 40 60 80
Minus Strand HSPs:
Score = 65 (22.9 bits), Expect = 0.77, P = 0.54
Identities = 12/27 (44%), Positives = 18/27 (66%), Frame = -1
Query: 92 SCNVAIHATCCSGYLTGSCSPTTSCLS 12
+CN A+ T C+G + G+ +PT SC S
Sbjct: 30 TCN-ALQLTPCAGAIMGNAAPTASCCS 55
>gi|7442088|pir||T09527 glycine-rich protein 1 - chickpea
>gi|3286723|emb|CAA07551.1| (AJ007556) glycine-rich protein 1
[Cicer arietinum]
Length = 148
Frame -1 hits (HSPs): ____
Frame -3 hits (HSPs): __
__________________________________________________
Database sequence: | | | | 148
0 50 100
Minus Strand HSPs:
Score = 50 (17.6 bits), Expect = 1.1, Sum P(2) = 0.65
Identities = 7/10 (70%), Positives = 8/10 (80%), Frame = -1
Query: 65 CCSGYLTGSC 36
CC GY +GSC
Sbjct: 122 CCGGYYSGSC 131
Score = 30 (10.6 bits), Expect = 1.1, Sum P(2) = 0.65
Identities = 4/5 (80%), Positives = 4/5 (80%), Frame = -3
Query: 84 CGNSC 70
CGN C
Sbjct: 118 CGNGC 122
>gi|4138119|emb|CAA08927.1| (AJ009980) orf2 [Klebsiella pneumoniae]
Length = 167
Frame -2 hits (HSPs): ____
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 167
0 50 100 150
Minus Strand HSPs:
Score = 47 (16.5 bits), Expect = 1.1, Sum P(2) = 0.66
Identities = 6/11 (54%), Positives = 9/11 (81%), Frame = -2
Query: 97 PGVAMWQFMPP 65
PG+ W+F+PP
Sbjct: 80 PGINQWRFIPP 90
Score = 35 (12.3 bits), Expect = 1.1, Sum P(2) = 0.66
Identities = 6/11 (54%), Positives = 9/11 (81%), Frame = -3
Query: 45 RIMFPDHQLPK 13
+I+FP H+L K
Sbjct: 142 KILFPRHRLRK 152
>gi|7939531|dbj|BAA95734.1| (AB025608) gene_id:K14B15.12~similar to unknown
protein (emb|CAB10220.1) [Arabidopsis thaliana]
Length = 320
Frame -2 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | | | 320
0 50 100 150 200 250 300
Minus Strand HSPs:
Score = 71 (25.0 bits), Expect = 1.2, P = 0.70
Identities = 16/33 (48%), Positives = 20/33 (60%), Frame = -2
Query: 112 PFISYP-GVAMWQFMPPAAVDTSQDHVPRPPVA 17
P+ YP + MW +PPA DTS+D PPVA
Sbjct: 288 PYGYYPPNMPMWSPLPPADRDTSRDLKNLPPVA 320
>gi|2114102|dbj|BAA20083.1| (AB003586) thyrotropin beta subunit
[Ctenopharyngodon idella]
Length = 147
Frame -1 hits (HSPs): _________
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | 147
0 50 100
Minus Strand HSPs:
Score = 42 (14.8 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 9/23 (39%), Positives = 13/23 (56%), Frame = -1
Query: 113 TFY*LSRSCN--VAIHATCCSGY 51
T Y + CN VA++ T C G+
Sbjct: 24 TIYIERQECNYCVAVNTTICMGF 46
Score = 34 (12.0 bits), Expect = 3.3, Sum P(2) = 0.96
Identities = 5/10 (50%), Positives = 8/10 (80%), Frame = -3
Query: 51 PHRIMFPDHQ 22
P R ++PDH+
Sbjct: 125 PVRHLYPDHE 134
>gi|6625581|gb|AAF19282.1|AF105037_14 (AF105037) 17.5 [murid herpesvirus 4]
Length = 289
Frame -2 hits (HSPs): ___ ___
__________________________________________________
Database sequence: | | | | | | | 289
0 50 100 150 200 250
Minus Strand HSPs:
Score = 47 (16.5 bits), Expect = 3.7, Sum P(2) = 0.98
Identities = 7/14 (50%), Positives = 8/14 (57%), Frame = -2
Query: 106 ISYPGVAMWQFMPP 65
+SYP W MPP
Sbjct: 68 LSYPHAGQWPIMPP 81
Score = 36 (12.7 bits), Expect = 3.7, Sum P(2) = 0.98
Identities = 8/16 (50%), Positives = 10/16 (62%), Frame = -2
Query: 70 PPAAVDTSQDHVPRPP 23
PP V++ VPRPP
Sbjct: 224 PPTVVES----VPRPP 235
>gi|462631|sp|P80249|MT14_MYTED METALLOTHIONEIN 10-IV (MT-10-IV)
>gi|542510|pir||S39419 metallothionein 10-IV - blue mussel
>gi|455751|gb|AAB29060.1| MT-10-IV=10 kda class I metallothionein
[Mytilus edulis=common sea mussels, cytosol, Peptide, 72 aa]
Length = 72
Frame -1 hits (HSPs): ___________
Frame -3 hits (HSPs): _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 72
0 20 40 60
__________________
Annotated Domains:
PFAM metalthio: Metallothionein 1..67
PRINTS MTMOLLUSC1: Mollusc metallothionein moti 23..34
PRINTS MTMOLLUSC2: Mollusc metallothionein moti 36..43
PRINTS MTMOLLUSC3: Mollusc metallothionein moti 51..62
PRINTS MTMOLLUSC4: Mollusc metallothionein moti 62..72
PRODOM PD000782: MT(23) MT1(12) MT2(11) 4..66
PROSITE EGF_1: EGF-like domain signature 1. 12..23
__________________
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = -1
Query: 62 CSGYLTGSCSPTTSC 18
C+G T C+P SC
Sbjct: 57 CTGPSTCKCAPGCSC 71
Score = 27 (9.5 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 3/6 (50%), Positives = 6/6 (100%), Frame = -3
Query: 87 QCGNSC 70
+CG++C
Sbjct: 24 RCGDAC 29
>gi|462628|sp|P80246|MT11_MYTED METALLOTHIONEIN 10-I (MT-10-I)
>gi|542507|pir||S39416 metallothionein 10-I - blue mussel
>gi|455752|gb|AAB29061.1| MT-10-I=10 kda class I metallothionein
[Mytilus edulis=common sea mussels, cytosol, Peptide, 72 aa]
Length = 72
Frame -1 hits (HSPs): ___________
Frame -3 hits (HSPs): _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 72
0 20 40 60
__________________
Annotated Domains:
DOMO DM01039: CLASSIMETALLOTHIONEINS 18..70
PFAM metalthio: Metallothionein 1..67
PRINTS MTMOLLUSC1: Mollusc metallothionein moti 23..34
PRINTS MTMOLLUSC2: Mollusc metallothionein moti 36..43
PRINTS MTMOLLUSC3: Mollusc metallothionein moti 51..62
PRINTS MTMOLLUSC4: Mollusc metallothionein moti 62..72
PRODOM PD000782: MT(23) MT1(12) MT2(11) 4..66
PROSITE EGF_1: EGF-like domain signature 1. 12..23
__________________
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = -1
Query: 62 CSGYLTGSCSPTTSC 18
C+G T C+P SC
Sbjct: 57 CTGPSTCKCAPGCSC 71
Score = 27 (9.5 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 3/6 (50%), Positives = 6/6 (100%), Frame = -3
Query: 87 QCGNSC 70
+CG++C
Sbjct: 24 RCGDAC 29
>gi|462629|sp|P80247|MT12_MYTED METALLOTHIONEIN 10-II (MT-10-II)
>gi|542508|pir||S39417 metallothionein 10-II - blue mussel
Length = 72
Frame -1 hits (HSPs): ___________
Frame -3 hits (HSPs): _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 72
0 20 40 60
__________________
Annotated Domains:
PFAM metalthio: Metallothionein 1..67
PRINTS MTMOLLUSC1: Mollusc metallothionein moti 23..34
PRINTS MTMOLLUSC2: Mollusc metallothionein moti 36..43
PRINTS MTMOLLUSC3: Mollusc metallothionein moti 51..62
PRINTS MTMOLLUSC4: Mollusc metallothionein moti 62..72
PRODOM PD000782: MT(23) MT1(12) MT2(11) 4..66
PROSITE EGF_1: EGF-like domain signature 1. 12..23
__________________
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = -1
Query: 62 CSGYLTGSCSPTTSC 18
C+G T C+P SC
Sbjct: 57 CTGPSTCKCAPGCSC 71
Score = 27 (9.5 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 3/6 (50%), Positives = 6/6 (100%), Frame = -3
Query: 87 QCGNSC 70
+CG++C
Sbjct: 24 RCGDAC 29
>gi|3135037|emb|CAA06548.1| (AJ005451) metallothionein 10 Ia [Mytilus edulis]
Length = 73
Frame -1 hits (HSPs): __________
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 73
0 20 40 60
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = -1
Query: 62 CSGYLTGSCSPTTSC 18
C+G T C+P SC
Sbjct: 58 CTGPSTCKCAPGCSC 72
Score = 27 (9.5 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 3/6 (50%), Positives = 6/6 (100%), Frame = -3
Query: 87 QCGNSC 70
+CG++C
Sbjct: 25 RCGDAC 30
>gi|3135039|emb|CAA06549.1| (AJ005452) metallothionein 10 Ib [Mytilus edulis]
Length = 73
Frame -1 hits (HSPs): __________
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 73
0 20 40 60
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = -1
Query: 62 CSGYLTGSCSPTTSC 18
C+G T C+P SC
Sbjct: 58 CTGPSTCKCAPGCSC 72
Score = 27 (9.5 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 3/6 (50%), Positives = 6/6 (100%), Frame = -3
Query: 87 QCGNSC 70
+CG++C
Sbjct: 25 RCGDAC 30
>gi|3135041|emb|CAA06550.1| (AJ005453) metallothionein 10 II [Mytilus edulis]
Length = 73
Frame -1 hits (HSPs): __________
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 73
0 20 40 60
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = -1
Query: 62 CSGYLTGSCSPTTSC 18
C+G T C+P SC
Sbjct: 58 CTGPSTCKCAPGCSC 72
Score = 27 (9.5 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 3/6 (50%), Positives = 6/6 (100%), Frame = -3
Query: 87 QCGNSC 70
+CG++C
Sbjct: 25 RCGDAC 30
>gi|3135045|emb|CAA06552.1| (AJ005455) metallothionein 10 IV [Mytilus edulis]
Length = 52
Frame -1 hits (HSPs): _______________
Frame -3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | 52
0 20 40
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = -1
Query: 62 CSGYLTGSCSPTTSC 18
C+G T C+P SC
Sbjct: 37 CTGPSTCKCAPGCSC 51
Score = 27 (9.5 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 3/6 (50%), Positives = 6/6 (100%), Frame = -3
Query: 87 QCGNSC 70
+CG++C
Sbjct: 4 RCGDAC 9
>gi|3970776|emb|CAA07546.1| (AJ007506) metallothionein 10IV [Mytilus edulis]
Length = 73
Frame -1 hits (HSPs): __________
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 73
0 20 40 60
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = -1
Query: 62 CSGYLTGSCSPTTSC 18
C+G T C+P SC
Sbjct: 58 CTGPSTCKCAPGCSC 72
Score = 27 (9.5 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 3/6 (50%), Positives = 6/6 (100%), Frame = -3
Query: 87 QCGNSC 70
+CG++C
Sbjct: 25 RCGDAC 30
>gi|1169918|sp|P46158|GLL3_CHICK GALLINACIN 2 >gi|631012|pir||S43284 gallinacin
- chicken (fragment) >gi|546443|gb|AAB30585.1| gallinacin 2,
Gal-2=cysteine-rich antimicrobial peptide [Gallus gallus=chickens,
peritoneal neutrophils, Peptide, 36 aa]
Length = 36
Frame -1 hits (HSPs): _________________________________
Frame -3 hits (HSPs): ____________
Annotated Domains: ________________________________________________
__________________________________________________
Database sequence: | | | 36
0 20
__________________
Annotated Domains:
PRODOM PD047466: AMP2(1) GLL3(1) 1..35
__________________
Minus Strand HSPs:
Score = 39 (13.7 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 9/24 (37%), Positives = 10/24 (41%), Frame = -1
Query: 74 HATCCSGYL--TGSCSPTTSCLSW 9
H C +L GSC SC W
Sbjct: 9 HFGGCPSHLIKVGSCFGFRSCCKW 32
Score = 28 (9.9 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 6/9 (66%), Positives = 6/9 (66%), Frame = -3
Query: 90 LQC-GNSCH 67
L C G SCH
Sbjct: 1 LFCKGGSCH 9
>gi|3617831|gb|AAC36052.1| (AF033336) beta-defensin prepropeptide [Gallus
gallus]
Length = 64
Frame -1 hits (HSPs): ___________________
Frame -3 hits (HSPs): ________
__________________________________________________
Database sequence: | | | | | 64
0 20 40 60
Minus Strand HSPs:
Score = 39 (13.7 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 9/24 (37%), Positives = 10/24 (41%), Frame = -1
Query: 74 HATCCSGYL--TGSCSPTTSCLSW 9
H C +L GSC SC W
Sbjct: 37 HFGGCPSHLIKVGSCFGFRSCCKW 60
Score = 28 (9.9 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 6/9 (66%), Positives = 6/9 (66%), Frame = -3
Query: 90 LQC-GNSCH 67
L C G SCH
Sbjct: 29 LFCKGGSCH 37
>gi|7441818|pir||T02063 metallothionein-like protein - rice
>gi|2407285|gb|AAB70545.1| (AF017365) metallothionein-like protein
[Oryza sativa]
Length = 80
Frame -1 hits (HSPs): ______
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 80
0 20 40 60
Minus Strand HSPs:
Score = 35 (12.3 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 5/6 (83%), Positives = 5/6 (83%), Frame = -3
Query: 87 QCGNSC 70
QCGN C
Sbjct: 15 QCGNGC 20
Score = 32 (11.3 bits), Expect = 4.0, Sum P(2) = 0.98
Identities = 6/9 (66%), Positives = 6/9 (66%), Frame = -1
Query: 44 GSCSPTTSC 18
GSC TSC
Sbjct: 64 GSCKCGTSC 72
>gi|462630|sp|P80248|MT13_MYTED METALLOTHIONEIN 10-III (MT-10-III)
>gi|542509|pir||S39418 metallothionein 10-III - blue mussel
Length = 72
Frame -1 hits (HSPs): ___________
Frame -3 hits (HSPs): _____
Annotated Domains: __________________________________________________
__________________________________________________
Database sequence: | | | | | 72
0 20 40 60
__________________
Annotated Domains:
PFAM metalthio: Metallothionein 1..67
PRINTS MTMOLLUSC1: Mollusc metallothionein moti 23..34
PRINTS MTMOLLUSC2: Mollusc metallothionein moti 36..43
PRINTS MTMOLLUSC3: Mollusc metallothionein moti 51..62
PRINTS MTMOLLUSC4: Mollusc metallothionein moti 62..72
PRODOM PD000782: MT(23) MT1(12) MT2(11) 4..66
PROSITE EGF_1: EGF-like domain signature 1. 12..23
__________________
Minus Strand HSPs:
Score = 39 (13.7 bits), Expect = 5.1, Sum P(2) = 0.99
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = -1
Query: 62 CSGYLTGSCSPTTSC 18
C+G T C+P SC
Sbjct: 57 CTGPSTCRCAPGCSC 71
Score = 27 (9.5 bits), Expect = 5.1, Sum P(2) = 0.99
Identities = 3/6 (50%), Positives = 6/6 (100%), Frame = -3
Query: 87 QCGNSC 70
+CG++C
Sbjct: 24 RCGDAC 29
>gi|2076632|emb|CAB08402.1| (Z95151) unknown [Mycobacterium leprae]
Length = 85
Frame 3 hits (HSPs): _________
Frame 1 hits (HSPs): __________
__________________________________________________
Database sequence: | | | | | | 85
0 20 40 60 80
Plus Strand HSPs:
Score = 39 (13.7 bits), Expect = 5.1, Sum P(2) = 0.99
Identities = 7/16 (43%), Positives = 10/16 (62%), Frame = +3
Query: 51 VSTAAGGMNCHIATPG 98
V+ AGG+ H+ PG
Sbjct: 47 VAGLAGGLKLHMQLPG 62
Score = 27 (9.5 bits), Expect = 5.1, Sum P(2) = 0.99
Identities = 5/17 (29%), Positives = 9/17 (52%), Frame = +1
Query: 4 QCQLRQLVVGEHDPVRY 54
+CQLR + ++ Y
Sbjct: 30 RCQLRDRSIWDNSSREY 46
>gi|3135043|emb|CAA06551.1| (AJ005454) metallothionein 10 III [Mytilus edulis]
Length = 73
Frame -1 hits (HSPs): __________
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 73
0 20 40 60
Minus Strand HSPs:
Score = 39 (13.7 bits), Expect = 5.1, Sum P(2) = 0.99
Identities = 7/15 (46%), Positives = 9/15 (60%), Frame = -1
Query: 62 CSGYLTGSCSPTTSC 18
C+G T C+P SC
Sbjct: 58 CTGPSTCRCAPGCSC 72
Score = 27 (9.5 bits), Expect = 5.1, Sum P(2) = 0.99
Identities = 3/6 (50%), Positives = 6/6 (100%), Frame = -3
Query: 87 QCGNSC 70
+CG++C
Sbjct: 25 RCGDAC 30
>gi|554506|gb|AAA42092.1| (M88762) RTS [Rattus norvegicus]
Length = 152
Frame -1 hits (HSPs): ________ ____
__________________________________________________
Database sequence: | | | || 152
0 50 100 150
Minus Strand HSPs:
Score = 46 (16.2 bits), Expect = 5.2, Sum P(2) = 0.99
Identities = 9/23 (39%), Positives = 14/23 (60%), Frame = -1
Query: 107 Y*LSRSCNVAIHATCCSGYLTGS 39
Y L R+ N + ++CCS + GS
Sbjct: 1 YRLRRTTNRILASSCCSSNILGS 23
Score = 28 (9.9 bits), Expect = 5.2, Sum P(2) = 0.99
Identities = 4/9 (44%), Positives = 4/9 (44%), Frame = -1
Query: 44 GSCSPTTSC 18
G C P C
Sbjct: 132 GPCDPCNPC 140
Score = 27 (9.5 bits), Expect = 6.5, Sum P(2) = 1.0
Identities = 4/9 (44%), Positives = 4/9 (44%), Frame = -1
Query: 44 GSCSPTTSC 18
G C P C
Sbjct: 129 GPCGPCDPC 137
>gi|7020180|dbj|BAA91024.1| (AK000232) unnamed protein product [Homo sapiens]
Length = 227
Frame -1 hits (HSPs): ____
Frame -2 hits (HSPs): ___
__________________________________________________
Database sequence: | | | | | | 227
0 50 100 150 200
Minus Strand HSPs:
Score = 41 (14.4 bits), Expect = 7.0, Sum P(2) = 1.0
Identities = 8/11 (72%), Positives = 8/11 (72%), Frame = -2
Query: 112 PFISYPGVAMW 80
PFI YPGV W
Sbjct: 171 PFI-YPGVLRW 180
Score = 37 (13.0 bits), Expect = 7.0, Sum P(2) = 1.0
Identities = 7/17 (41%), Positives = 9/17 (52%), Frame = -1
Query: 65 CCSGYLTGSCSPTTSCL 15
CC GSC P++ L
Sbjct: 197 CCLPSTRGSCWPSSRTL 213
>gi|3329488|gb|AAC26862.1| (AF073301) steroid 5-alpha-reductase type I [Homo
sapiens] >gi|3329490|gb|AAC26863.1| (AF073302) steroid
5-alpha-reductase type I [Homo sapiens]
Length = 98
Frame -3 hits (HSPs): ________ ____________
__________________________________________________
Database sequence: | | | | | | 98
0 20 40 60 80
Minus Strand HSPs:
Score = 34 (12.0 bits), Expect = 7.2, Sum P(2) = 1.0
Identities = 7/14 (50%), Positives = 8/14 (57%), Frame = -3
Query: 111 LLLAIQELQCGNSC 70
LL A+ LQC C
Sbjct: 12 LLAALAYLQCAVGC 25
Score = 34 (12.0 bits), Expect = 7.2, Sum P(2) = 1.0
Identities = 9/22 (40%), Positives = 13/22 (59%), Frame = -3
Query: 69 HLLQWIPHRIMFPDHQLPKLAL 4
H L+ +P R + +LP LAL
Sbjct: 46 HRLR-VPARAAWVVQELPSLAL 66
>gi|7582391|gb|AAF64306.1|AF249870_1 (AF249870) p53 apoptosis-associated target
[Mus musculus]
Length = 193
Frame -1 hits (HSPs): _____
Frame -3 hits (HSPs): ____
__________________________________________________
Database sequence: | | | | | 193
0 50 100 150
Minus Strand HSPs:
Score = 40 (14.1 bits), Expect = 7.4, Sum P(2) = 1.0
Identities = 6/13 (46%), Positives = 9/13 (69%), Frame = -3
Query: 90 LQCGNSCHLLQWI 52
L+CG +C +WI
Sbjct: 2 LRCGLACERCRWI 14
Score = 36 (12.7 bits), Expect = 7.4, Sum P(2) = 1.0
Identities = 8/18 (44%), Positives = 9/18 (50%), Frame = -1
Query: 56 GYLTGSCSPTTSCLSWHC 3
G+L S TS L W C
Sbjct: 34 GWLQSSNHIQTSSLWWRC 51
>gi|4324198|gb|AAD16738.1| (AF103678) immunoglobulin lambda light chain
variable region [Homo sapiens]
Length = 108
Frame -1 hits (HSPs): _____
Frame -2 hits (HSPs): _______
__________________________________________________
Database sequence: | | | | | | | 108
0 20 40 60 80 100
Minus Strand HSPs:
Score = 36 (12.7 bits), Expect = 7.5, Sum P(2) = 1.0
Identities = 7/14 (50%), Positives = 8/14 (57%), Frame = -2
Query: 106 ISYPGVAMWQFMPP 65
I YPG + Q PP
Sbjct: 25 IMYPGTSSSQEQPP 38
Score = 33 (11.6 bits), Expect = 7.5, Sum P(2) = 1.0
Identities = 6/10 (60%), Positives = 8/10 (80%), Frame = -1
Query: 56 GYLTGSCSPT 27
G+LT S +PT
Sbjct: 51 GFLTDSLAPT 60
>gi|2306989|gb|AAB65797.1| (AF011553) homeobox protein [Pennisetum glaucum]
>gi|3341721|gb|AAC27486.1| (AF016646) homeobox protein [Secale
cereale]
Length = 57
Frame 2 hits (HSPs): _______ _______
__________________________________________________
Database sequence: | | | | 57
0 20 40
Plus Strand HSPs:
Score = 34 (12.0 bits), Expect = 8.1, Sum P(2) = 1.0
Identities = 5/7 (71%), Positives = 6/7 (85%), Frame = +2
Query: 11 SLGNWWS 31
SL NWW+
Sbjct: 11 SLMNWWN 17
Score = 30 (10.6 bits), Expect = 8.1, Sum P(2) = 1.0
Identities = 4/8 (50%), Positives = 6/8 (75%), Frame = +2
Query: 89 NSWIANKR 112
N+W N+R
Sbjct: 44 NNWFVNQR 51
>gi|6456581|gb|AAF09189.1| (AF176643) serine protease inhibitor TCI [Trichuris
suis]
Length = 91
Frame -1 hits (HSPs): _______
Frame -3 hits (HSPs): ______
__________________________________________________
Database sequence: | | | | | | 91
0 20 40 60 80
Minus Strand HSPs:
Score = 35 (12.3 bits), Expect = 8.2, Sum P(2) = 1.0
Identities = 7/13 (53%), Positives = 9/13 (69%), Frame = -1
Query: 59 SGYLTGSCSPTTS 21
+G L GSC+P S
Sbjct: 36 TGPLFGSCNPEKS 48
Score = 31 (10.9 bits), Expect = 8.2, Sum P(2) = 1.0
Identities = 7/10 (70%), Positives = 7/10 (70%), Frame = -3
Query: 108 LLAIQELQCG 79
LLA E QCG
Sbjct: 11 LLAKAEQQCG 20
>gi|1731099|sp|Q09304|YQP5_CAEEL HYPOTHETICAL 13.8 KD PROTEIN F07F6.5 IN
CHROMOSOME III >gi|7498565|pir||T15965 hypothetical protein F07F6.5
- Caenorhabditis elegans >gi|746451|gb|AAC46778.1| (U23486) F07F6.5
gene product [Caenorhabditis elegans]
Length = 124
Frame -1 hits (HSPs): __________
Frame -3 hits (HSPs): ___
Annotated Domains: _______________________________________________
__________________________________________________
Database sequence: | | | | 124
0 50 100
__________________
Annotated Domains:
PRODOM PD031729: O16887(1) YQP5(1) 8..122
__________________
Minus Strand HSPs:
Score = 39 (13.7 bits), Expect = 8.4, Sum P(2) = 1.0
Identities = 8/22 (36%), Positives = 10/22 (45%), Frame = -1
Query: 68 TCCSGYLTGSCSPTTSCLSWHC 3
TC LT S SC++ C
Sbjct: 43 TCVFNCLTEDVSKVLSCVATRC 64
Score = 31 (10.9 bits), Expect = 8.4, Sum P(2) = 1.0
Identities = 4/6 (66%), Positives = 5/6 (83%), Frame = -3
Query: 87 QCGNSC 70
+CGN C
Sbjct: 7 KCGNEC 12
Parameters:
filter=none
matrix=BLOSUM62
V=50
B=50
E=10
gi
H=1
sort_by_pvalue
echofilter
ctxfactor=5.92
Query ----- As Used ----- ----- Computed ----
Frame MatID Matrix name Lambda K H Lambda K H
Std. 0 BLOSUM62 0.318 0.135 0.401
+3 0 BLOSUM62 0.318 0.135 0.401 0.356 0.160 0.587
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+2 0 BLOSUM62 0.318 0.135 0.401 0.334 0.141 0.603
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
+1 0 BLOSUM62 0.318 0.135 0.401 0.370 0.169 0.579
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-1 0 BLOSUM62 0.318 0.135 0.401 0.339 0.138 0.563
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-2 0 BLOSUM62 0.318 0.135 0.401 0.334 0.145 0.518
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
-3 0 BLOSUM62 0.318 0.135 0.401 0.332 0.146 0.503
Q=9,R=2 0.244 0.0300 0.180 n/a n/a n/a
Query
Frame MatID Length Eff.Length E S W T X E2 S2
+3 0 37 37 10. 57 3 12 22 0.11 27
24 0.011 27
+2 0 37 36 10. 57 3 12 22 0.10 27
24 0.011 27
+1 0 37 36 10. 57 3 12 22 0.10 27
24 0.011 27
-1 0 37 37 10. 57 3 12 22 0.11 27
24 0.011 27
-2 0 37 37 10. 57 3 12 22 0.11 27
24 0.011 27
-3 0 37 36 10. 57 3 12 22 0.10 27
24 0.011 27
Statistics:
Database: /usr/local/dot5/sl_home/beauty/seqdb/blast/nr
Title: nr
Release date: unknown
Posted date: 8:50 PM CDT May 27, 2000
Format: BLAST
# of letters in database: 158,518,215
# of sequences in database: 505,245
# of database sequences satisfying E: 30
No. of states in DFA: 564 (56 KB)
Total size of DFA: 104 KB (128 KB)
Time to generate neighborhood: 0.00u 0.01s 0.01t Elapsed: 00:00:00
No. of threads or processors used: 4
Search cpu time: 63.52u 1.41s 64.93t Elapsed: 00:00:55
Total cpu time: 63.56u 1.45s 65.01t Elapsed: 00:00:55
Start: Wed Feb 14 15:05:17 2001 End: Wed Feb 14 15:06:12 2001
Annotated Domains Database: March 14, 2000
Release Date: March 14, 2000