BLASTP 2.2.17 [Aug-26-2007]
Reference:
Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schäffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Reference for composition-based statistics:
Schäffer, Alejandro A., L. Aravind, Thomas L. Madden,
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,
Eugene V. Koonin, and Stephen F. Altschul (2001),
"Improving the accuracy of PSI-BLAST protein database searches with
composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005.
Query= FN1497
(374 letters)
Database: nr
5,470,121 sequences; 1,894,087,724 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|19704829|ref|NP_602324.1| Multidrug resistance protein 2... 557 e-157
gi|148324100|gb|EDK89350.1| possible MFS family major facil... 509 e-142
gi|34762482|ref|ZP_00143481.1| Multidrug resistance protein... 293 1e-77
gi|34762481|ref|ZP_00143480.1| Multidrug resistance protein... 144 1e-32
gi|145622154|ref|ZP_01778116.1| major facilitator superfami... 79 5e-13
gi|42526587|ref|NP_971685.1| hypothetical protein TDE1077 [... 75 8e-12
gi|37525465|ref|NP_928809.1| hypothetical protein plu1514 [... 72 8e-11
gi|87122418|ref|ZP_01078299.1| multidrug-efflux transporter... 60 2e-07
gi|16081044|ref|NP_391872.1| hypothetical protein BSU39930 ... 57 2e-06
gi|119962631|ref|YP_947771.1| putative major facilitator su... 55 9e-06
>gi|19704829|ref|NP_602324.1| Multidrug resistance protein 2 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
gi|19712705|gb|AAL93623.1| Multidrug resistance protein 2 [Fusobacterium nucleatum subsp.
nucleatum ATCC 25586]
Length = 374
Score = 557 bits (1436), Expect = e-157, Method: Composition-based stats.
Identities = 374/374 (100%), Positives = 374/374 (100%)
Query: 1 MAILYDSVITAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVL 60
MAILYDSVITAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVL
Sbjct: 1 MAILYDSVITAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVL 60
Query: 61 TGSAIVMIAYSVSISMLYISAILMGIGESQISGTLFPWFVNSLDKVDNLQEKEEYILKSN 120
TGSAIVMIAYSVSISMLYISAILMGIGESQISGTLFPWFVNSLDKVDNLQEKEEYILKSN
Sbjct: 61 TGSAIVMIAYSVSISMLYISAILMGIGESQISGTLFPWFVNSLDKVDNLQEKEEYILKSN 120
Query: 121 GQVQYSTNIIGILTGFVISFLNLDYKFILILAGTFQAINGIFIYFSFQDNKSTETNLIKI 180
GQVQYSTNIIGILTGFVISFLNLDYKFILILAGTFQAINGIFIYFSFQDNKSTETNLIKI
Sbjct: 121 GQVQYSTNIIGILTGFVISFLNLDYKFILILAGTFQAINGIFIYFSFQDNKSTETNLIKI 180
Query: 181 GKKSFQIFLKDYKLWIYTLTMTIHYSFYSVHLFIWQPRANLLGVIGSKLTGINSVYLSCL 240
GKKSFQIFLKDYKLWIYTLTMTIHYSFYSVHLFIWQPRANLLGVIGSKLTGINSVYLSCL
Sbjct: 181 GKKSFQIFLKDYKLWIYTLTMTIHYSFYSVHLFIWQPRANLLGVIGSKLTGINSVYLSCL 240
Query: 241 VISGLIIKYKKEIKNYLYVLYVILIPISLIIIYQSQNLILYILGTILLGISNGMVAPQIM 300
VISGLIIKYKKEIKNYLYVLYVILIPISLIIIYQSQNLILYILGTILLGISNGMVAPQIM
Sbjct: 241 VISGLIIKYKKEIKNYLYVLYVILIPISLIIIYQSQNLILYILGTILLGISNGMVAPQIM 300
Query: 301 STVHYFIPDEVRSSVISLLSSLSSIFLIFLQVIIGKILDIKGNYYLEILCVLFGIIYIVC 360
STVHYFIPDEVRSSVISLLSSLSSIFLIFLQVIIGKILDIKGNYYLEILCVLFGIIYIVC
Sbjct: 301 STVHYFIPDEVRSSVISLLSSLSSIFLIFLQVIIGKILDIKGNYYLEILCVLFGIIYIVC 360
Query: 361 IILILKWLKENRNR 374
IILILKWLKENRNR
Sbjct: 361 IILILKWLKENRNR 374
>gi|148324100|gb|EDK89350.1| possible MFS family major facilitator transporter [Fusobacterium
nucleatum subsp. polymorphum ATCC 10953]
Length = 392
Score = 509 bits (1311), Expect = e-142, Method: Composition-based stats.
Identities = 343/374 (91%), Positives = 364/374 (97%)
Query: 1 MAILYDSVITAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVL 60
MAILYDSVITAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFT+GMVL
Sbjct: 18 MAILYDSVITAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTVGMVL 77
Query: 61 TGSAIVMIAYSVSISMLYISAILMGIGESQISGTLFPWFVNSLDKVDNLQEKEEYILKSN 120
TGSAIVMIAYSV+IS+LYISAILMGIGESQISGTLFPWFVNSLDKV+NLQEKEEYILKSN
Sbjct: 78 TGSAIVMIAYSVNISILYISAILMGIGESQISGTLFPWFVNSLDKVENLQEKEEYILKSN 137
Query: 121 GQVQYSTNIIGILTGFVISFLNLDYKFILILAGTFQAINGIFIYFSFQDNKSTETNLIKI 180
GQVQYSTNIIGI GF+ISFLNLDYKF+LILAGTFQAINGI IYFSFQDNKS E NLIKI
Sbjct: 138 GQVQYSTNIIGIFIGFIISFLNLDYKFVLILAGTFQAINGILIYFSFQDNKSIEANLIKI 197
Query: 181 GKKSFQIFLKDYKLWIYTLTMTIHYSFYSVHLFIWQPRANLLGVIGSKLTGINSVYLSCL 240
GKKSFQ+FLK+ KLWIYTL MTIHYSFYSVHLFIWQPRAN LG+IGSKLTGINS+YLSCL
Sbjct: 198 GKKSFQVFLKENKLWIYTLAMTIHYSFYSVHLFIWQPRANFLGIIGSKLTGINSIYLSCL 257
Query: 241 VISGLIIKYKKEIKNYLYVLYVILIPISLIIIYQSQNLILYILGTILLGISNGMVAPQIM 300
V+SGLIIKYKKEIKNYLYVL VILIPISLIIIYQSQNLILY+LGTILLG+SNGMVAPQIM
Sbjct: 258 VVSGLIIKYKKEIKNYLYVLCVILIPISLIIIYQSQNLILYLLGTILLGLSNGMVAPQIM 317
Query: 301 STVHYFIPDEVRSSVISLLSSLSSIFLIFLQVIIGKILDIKGNYYLEILCVLFGIIYIVC 360
STVHYFI DEVRSSVISLLSSLSSIFLIFLQVIIGKILDIKG+YYL+ILCVLFG+IYI+C
Sbjct: 318 STVHYFILDEVRSSVISLLSSLSSIFLIFLQVIIGKILDIKGSYYLKILCVLFGVIYIIC 377
Query: 361 IILILKWLKENRNR 374
IILILKWL+E++N+
Sbjct: 378 IILILKWLREDKNK 391
>gi|34762482|ref|ZP_00143481.1| Multidrug resistance protein 2 [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887881|gb|EAA24950.1| Multidrug resistance protein 2 [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 188
Score = 293 bits (750), Expect = 1e-77, Method: Composition-based stats.
Identities = 174/188 (92%), Positives = 179/188 (95%)
Query: 1 MAILYDSVITAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVL 60
MAILYDSVITAFLLQ GLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVL
Sbjct: 1 MAILYDSVITAFLLQFGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVL 60
Query: 61 TGSAIVMIAYSVSISMLYISAILMGIGESQISGTLFPWFVNSLDKVDNLQEKEEYILKSN 120
TGSAIVMIAYSV+I+MLYISAILMGIGESQISGTLFPWFVNSLDKV+NLQ+KE YILKSN
Sbjct: 61 TGSAIVMIAYSVNITMLYISAILMGIGESQISGTLFPWFVNSLDKVENLQKKEGYILKSN 120
Query: 121 GQVQYSTNIIGILTGFVISFLNLDYKFILILAGTFQAINGIFIYFSFQDNKSTETNLIKI 180
GQVQYSTNIIGIL GF ISFLNLDYKFILILAGTFQAINGI IYFSFQDNKS E NLIKI
Sbjct: 121 GQVQYSTNIIGILAGFAISFLNLDYKFILILAGTFQAINGILIYFSFQDNKSIEANLIKI 180
Query: 181 GKKSFQIF 188
GKK F+ F
Sbjct: 181 GKKVFRYF 188
>gi|34762481|ref|ZP_00143480.1| Multidrug resistance protein 2 [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
gi|27887880|gb|EAA24949.1| Multidrug resistance protein 2 [Fusobacterium nucleatum subsp.
vincentii ATCC 49256]
Length = 138
Score = 144 bits (362), Expect = 1e-32, Method: Composition-based stats.
Identities = 117/133 (87%), Positives = 129/133 (96%)
Query: 240 LVISGLIIKYKKEIKNYLYVLYVILIPISLIIIYQSQNLILYILGTILLGISNGMVAPQI 299
+V+SGLIIKYKKEIKNYLY+L VILIPISLIIIYQS NLILY++GTILLG+SNGMVAPQI
Sbjct: 1 MVVSGLIIKYKKEIKNYLYILCVILIPISLIIIYQSPNLILYLVGTILLGLSNGMVAPQI 60
Query: 300 MSTVHYFIPDEVRSSVISLLSSLSSIFLIFLQVIIGKILDIKGNYYLEILCVLFGIIYIV 359
MSTVHYFI DEVRSSVISLLSSLSS+FLIFLQVIIGKILDIKGNYYLE+LCVLFGIIYI+
Sbjct: 61 MSTVHYFISDEVRSSVISLLSSLSSVFLIFLQVIIGKILDIKGNYYLEMLCVLFGIIYII 120
Query: 360 CIILILKWLKENR 372
CI+ ILKWL+EN+
Sbjct: 121 CIVSILKWLRENK 133
>gi|145622154|ref|ZP_01778116.1| major facilitator superfamily MFS_1 [Petrotoga mobilis SJ95]
gi|144947509|gb|EDJ82539.1| major facilitator superfamily MFS_1 [Petrotoga mobilis SJ95]
Length = 409
Score = 79.0 bits (193), Expect = 5e-13, Method: Composition-based stats.
Identities = 88/354 (24%), Positives = 162/354 (45%), Gaps = 23/354 (6%)
Query: 4 LYDSVITAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVLTGS 63
L+ +V A + GL + QIG + ++ + +FDYPTG+ ADRYGR + +G +
Sbjct: 30 LFGTVYVAHMGIRGLTSFQIGQVLAIASIALSIFDYPTGNIADRYGRKRSLVLGFFIWSI 89
Query: 64 AIVMIAYSVSISMLYISAILMGIGESQISGTLFPWFVNSLDKVDNLQEKEEYILKSNGQV 123
+++ + ++ +S +L +G S ISGT WFV+ + K K +V
Sbjct: 90 GLLVFFQANNLFTFILSILLWAVGVSLISGTPGAWFVDEITKEGRAHLK--------AKV 141
Query: 124 QYSTNIIGILTGFVISFLNLDY-----KFILILAGTFQAINGIFIYFSFQDNKSTETNLI 178
+ N I ++ G +++ L+ F L++AG I + F +N
Sbjct: 142 FPNANAISLIFGAIVALLSSALAIGRPDFPLLVAGIMALGTSIILIFILNENYGDRAISF 201
Query: 179 K--IGKKSFQIFLKDYKLWIYTLTMTIHYSFYSVHLFIWQP-RANLLGVIGSKLTGINSV 235
+ + + + IF I +M+ +F + + IWQ L + + L ++
Sbjct: 202 RKALARNTIDIFKSTTMRLILIYSMSGRIAFQTF-VMIWQLYMVKELKLPTAYLGFTMAI 260
Query: 236 YLSCLVI----SGLIIKYKKEIKNYLYVLYVILIPISLIIIYQSQNLILYILGTILLGIS 291
+L L I +G+++K + +K + ++ LI I I I +++ + +G L+ +
Sbjct: 261 FLVVLAIGNSLAGILLKRFEGVK--VSIMGQGLIAIGSITIASHTSIVAFYIGACLIELG 318
Query: 292 NGMVAPQIMSTVHYFIPDEVRSSVISLLSSLSSIFLIFLQVIIGKILDIKGNYY 345
G+ VH FIP E R+S IS +S+ S+F + ++ G I D G Y
Sbjct: 319 LGIDMSASSVWVHDFIPSERRASYISAISAAGSLFGFTIPLVSGYIADQIGFRY 372
>gi|42526587|ref|NP_971685.1| hypothetical protein TDE1077 [Treponema denticola ATCC 35405]
gi|41816780|gb|AAS11566.1| membrane protein, putative [Treponema denticola ATCC 35405]
Length = 401
Score = 74.7 bits (182), Expect = 8e-12, Method: Composition-based stats.
Identities = 77/336 (22%), Positives = 150/336 (44%), Gaps = 17/336 (5%)
Query: 3 ILYDSVITAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVLTG 62
+L VI+ +L QI +L+S++L +F+YP+G AD +GR K F G+ +
Sbjct: 23 VLNSCVISLYLKSQNFSYFQISILFSLILGVGFIFEYPSGLLADCFGRKKTFAAGLFFSC 82
Query: 63 SAIVMIAYSVSISMLYISAILMGIGESQISGTLFPWFVNSLDKVDNLQEKEEYILKSNGQ 122
+ ++ + A GI ++ +SG+L W V+ K+ N E+ ++
Sbjct: 83 MQYLCYGFARNFLFFLFGAFFAGISDAFLSGSLEGWLVSENKKIQN----EKNNVRVFSI 138
Query: 123 VQYSTNIIGILTGFVIS-FLNLDYKFILILAGTFQAINGIFIYFSFQDNKSTETNLIKIG 181
+ NI +++ +I+ F++L + I AG I +F F DNK+ T + +
Sbjct: 139 SRTCINIFSVVSILLIARFIDLGINRLFIFAGIGLFILSGAAFFIFPDNKAQNTTIKQNL 198
Query: 182 KKSFQIFLKDYKLWIYTLTMTIHYSFYSVHLFIWQPRANLLGVIGSKLTGINSVYLSCLV 241
S + + + L + Y+ +S+++ IWQ A+ L + + S+ L
Sbjct: 199 ASSVKELFHNQSVLQAGLILASLYTCFSIYILIWQNMAHSLSFTNMHIPLLRSITLIGGG 258
Query: 242 ISGLIIKYKKEI--KNYLYVLYVILIPISLIIIYQSQNLILYILGTILL----------G 289
++ + + + K ++ + ILI +S I+ S + +++ + L G
Sbjct: 259 VASYTARKARTVSAKRKIFTICFILIAVSFCIMAVSSSSLIFFKTYLFLQPFTAAMFIYG 318
Query: 290 ISNGMVAPQIMSTVHYFIPDEVRSSVISLLSSLSSI 325
+ G V P + I E +SV SL+S +S+
Sbjct: 319 LGTGAVIPLFYGYLSEVIKGEAHASVFSLVSGFASL 354
>gi|37525465|ref|NP_928809.1| hypothetical protein plu1514 [Photorhabdus luminescens subsp.
laumondii TTO1]
gi|36784893|emb|CAE13807.1| unnamed protein product [Photorhabdus luminescens subsp. laumondii
TTO1]
Length = 381
Score = 71.6 bits (174), Expect = 8e-11, Method: Composition-based stats.
Identities = 101/379 (26%), Positives = 179/379 (47%), Gaps = 23/379 (6%)
Query: 1 MAILYDSVITAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVL 60
M +L + T F+L GL IGL+ ++ LFD P+ AD++GR +
Sbjct: 1 MRMLVGATSTIFILNHGLTLVDIGLMKTIQSFIYFLFDIPSSYLADKFGRKFAIILSTTF 60
Query: 61 TGSAIVMIAYSVSISMLYISAILMGIGESQISGTLFPWFV-NSLDKVDNLQEKEEYILKS 119
G +++ + S + YI+ I I + + G + + + NSL+ D + IL
Sbjct: 61 GGVWLIITGIADSKYLFYIAEIFNSISLTILGGVFYSYLIDNSLNDNDTHK-----ILGE 115
Query: 120 NGQVQYSTNIIGILTGFVISFLNLDYKFILILAGTFQAINGI----FIYFSFQDNKSTET 175
+ ++Q+ I + G +I+ + D + + ++AG+ I + F+ S N+
Sbjct: 116 SNKLQFLFMAIFSIIGSLIT--DFDDRLVWLIAGSGCIILSVSLSWFLPKSITKNRQPNL 173
Query: 176 NLIKIGKKSFQIFLKDYK--LWIYTLTMTIHYSFYSVHLFIWQPRANL----LGVIGSKL 229
+ +K K S + LKD K L+I +++++ ++ + L WQP N LGV
Sbjct: 174 SFLKEIKTSIAM-LKDNKNYLFITSISLSSSLLYFQIILQYWQPLINYIIEELGVSIFFG 232
Query: 230 TGINSVYLSCLVISGLIIKYKKEIKNYLYVLYVILIPISLIIIY--QSQNLILYILGTIL 287
+++ LS + +I K + KN+LY + VIL+ SL IY +N I I I+
Sbjct: 233 IVFSAILLSQSISGWIISKNEDNNKNHLYSI-VILLVCSLTCIYGVYEKNHITTISTIIM 291
Query: 288 LGISNGMVAPQIMSTVHYFIPDEVRSSVISLLSSLSSIFLIFLQVIIGKILDIKGNYYLE 347
G +N ++ + S H IP E+RS+ S +S+++ + + + +I I + G Y
Sbjct: 292 FG-ANQVMTTSLRSNYHQIIPSELRSTFDSFISTITRLIAVIVIPLIALITENFGWIYFP 350
Query: 348 ILCVLFGIIYIVCIILILK 366
IL L I I+C I K
Sbjct: 351 ILISLIISINILCYFFIKK 369
>gi|87122418|ref|ZP_01078299.1| multidrug-efflux transporter [Marinomonas sp. MED121]
gi|86162393|gb|EAQ63677.1| multidrug-efflux transporter [Marinomonas sp. MED121]
Length = 418
Score = 60.5 bits (145), Expect = 2e-07, Method: Composition-based stats.
Identities = 40/159 (25%), Positives = 81/159 (50%), Gaps = 16/159 (10%)
Query: 8 VITAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVLTGSAIVM 67
++T + +G+ +IG++ +V+ +T ++ + PTG AD+ GR K+F I + L +++++
Sbjct: 27 ILTPLFIAMGVSIKEIGIIMAVMGVTVIILEMPTGGLADQIGRKKLFIISLALNAASLLI 86
Query: 68 IAYSVSISMLYISAILMGIGESQISGTLFPWFVNSLD-KVDNLQEKEEYILKSNGQVQYS 126
+ S+ +S I G G S SGT+ WFV + + K D + ++ + + + +
Sbjct: 87 LCLLPSVIGAIVSMIFWGAGISMSSGTITAWFVETFNAKKDQIDLQQGFAI-----IAFR 141
Query: 127 TNIIG----------ILTGFVISFLNLDYKFILILAGTF 155
TN++G + G F +D I++L G
Sbjct: 142 TNLMGATGALLCSLVVFLGITFEFEEIDVYRIILLGGAL 180
>gi|16081044|ref|NP_391872.1| hypothetical protein BSU39930 [Bacillus subtilis subsp. subtilis
str. 168]
gi|2851676|sp|P42112|YXAM_BACSU Uncharacterized protein yxaM
gi|2280498|dbj|BAA21592.1| probable transporter [Bacillus subtilis]
gi|2636539|emb|CAB16029.1| yxaM [Bacillus subtilis subsp. subtilis str. 168]
Length = 399
Score = 57.0 bits (136), Expect = 2e-06, Method: Composition-based stats.
Identities = 80/359 (22%), Positives = 160/359 (44%), Gaps = 15/359 (4%)
Query: 22 QIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVLTGSAIVMIAYSVSISMLYISA 81
QIGL+ +V+ + +++F+ P+G FADRYG + + S ++ ++
Sbjct: 35 QIGLMGAVLEIAKLIFEVPSGVFADRYGIKISIASSFFFSILTWAFFPFIDSAAICILAM 94
Query: 82 ILMGIGESQISGTLFPWFVNSLDKVDNLQEKEEYILKSNGQVQYSTNIIGILTGFVISFL 141
I+ + +S ISG+ W + +V + ++K N Q+ + IIG + + L
Sbjct: 95 IIWALSDSLISGSFETW----MSRVAGEDRFGKEMMK-NTQLLITFLIIGSIASGYLYSL 149
Query: 142 NLDYKFILILAGTFQAINGIFIYFSFQDNKST------ETNLIKIGKKSFQIFLKDYKLW 195
N+ + F+L++ + ++ T + + IKI K+S +I ++
Sbjct: 150 NIYFPFLLVMVIYLLLFIWMSVFIKVPSVSETNHGDQNQHDSIKIIKESLKIIFNKKRVL 209
Query: 196 IYTLTMTIHYSFYSVHLFIWQPRANLLGVIGSKLTGINSV-YLSCLVISGLIIKYKKEIK 254
+ + + Y WQP + LG L I + + LV+ L I+++K+I+
Sbjct: 210 LIVIAGFFTATAYDTISRYWQPFLSDLGFSEKSLGYIFPLGGFTALVLLTLTIRFEKKIE 269
Query: 255 NYLYVLYVILIPISLIIIYQSQNLI--LYILGTILLGISNGMVAPQIMSTVHYFIPDEVR 312
Y+ L + +++ + L I T L + P + S ++ F PD +
Sbjct: 270 KNPYLALTSLDSMGMVMTFLLSRAFRPLGIPCTAFLLAIEDIHHPIVTSYLNKFFPDSYK 329
Query: 313 SSVISLLSSLSSIFLIFLQVIIGKILDIKGNYYLEILCVLFGIIYIVCIILILKWLKEN 371
+++ SL S + +I I VI G I G + ++ +F +I I+ ++ K +K+N
Sbjct: 330 NTLFSLNSGVGAIGEILSGVIFGIISAAFGLSAMFVVVAVFLLIPIILYTIVPK-IKDN 387
>gi|119962631|ref|YP_947771.1| putative major facilitator superfamily (MFS) transporter
[Arthrobacter aurescens TC1]
gi|119949490|gb|ABM08401.1| putative major facilitator superfamily (MFS) transporter
[Arthrobacter aurescens TC1]
Length = 435
Score = 54.7 bits (130), Expect = 9e-06, Method: Composition-based stats.
Identities = 49/172 (28%), Positives = 76/172 (44%), Gaps = 9/172 (5%)
Query: 10 TAFLLQLGLKNTQIGLLWSVVLLTQMLFDYPTGSFADRYGRLKIFTIGMVLTGSAI---- 65
T FLL GL N + + +LF+ PTG AD +GR F +G V +
Sbjct: 43 TLFLLDAGLSNLEAFAANAFFTAGMVLFEIPTGVVADGWGRRVSFLLGTVTLAVSTYLYY 102
Query: 66 VMIAYSVSISMLYISAILMGIGESQISGTLFPWFVNSLDKVDNLQEKEEYILKSNGQVQY 125
VM S M + ++L+G+G + SG + W V++L + + E +L VQ
Sbjct: 103 VMWQISAPFWMWAVVSVLLGLGFTFFSGAVEAWLVDAL-RFSGYEGGLESVLGRGQMVQG 161
Query: 126 STNIIGILTGFVIS-FLNLDYKF---ILILAGTFQAINGIFIYFSFQDNKST 173
++G + G VI+ NL F +L+L F G+ F +ST
Sbjct: 162 VAMLVGSVAGGVIAQATNLGVPFLLRVLVLLAMFAVAFGLMHDVGFTPERST 213
Database: nr
Posted date: Sep 17, 2007 11:41 AM
Number of letters in database: 999,999,834
Number of sequences in database: 2,976,859
Database: /nucleus1/users/jsaw/ncbi/db/nr.01
Posted date: Sep 17, 2007 11:48 AM
Number of letters in database: 894,087,890
Number of sequences in database: 2,493,262
Lambda K H
0.329 0.145 0.422
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 1,266,061,644
Number of Sequences: 5470121
Number of extensions: 51811152
Number of successful extensions: 242264
Number of sequences better than 1.0e-05: 162
Number of HSP's better than 0.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 150
Number of HSP's that attempted gapping in prelim test: 242069
Number of HSP's gapped (non-prelim): 197
length of query: 374
length of database: 1,894,087,724
effective HSP length: 134
effective length of query: 240
effective length of database: 1,161,091,510
effective search space: 278661962400
effective search space used: 278661962400
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 130 (54.7 bits)