files

Summary of the tRNAs found by tRNAscan-se

Amino Acid	Count
Ala	4
Arg	6
Asn	6
Asp	4
Cys	1
Gln	3
Glu	5
Gly	8
His	3
Ile	3
Leu	9
Lys	7
Met	8
Phe	3
Pro	3
Pseudo	0
Ser	5
Thr	6
Trp	2
Tyr	3
Undet	0
Val	5

List of tRNAs found by tRNAscan-se

Amino Acid	Anticodon	Contig	tRNA	tRNA Location	Intron Location	Cove Score	HMM Score
Ala	TGC	Contig176	21	144098 ..144173	0..0	94.65	81.24
Ala	TGC	Contig176	2	14606 ..14681	0..0	91.77	75.69
Ala	TGC	Contig176	58	926564 ..926639	0..0	94.65	81.24
Ala	TGC	Contig176	82	5737997..5737922	0..0	91.77	75.69
Arg	ACG	Contig176	7	29427 ..29501	0..0	59.11	32.18
Arg	CCT	Contig176	77	5911142..5911068	0..0	63.88	46.64
Arg	TCG	Contig176	46	433303 ..433379	0..0	79.88	64.22
Arg	TCT	Contig176	30	431798 ..431874	0..0	87.64	62.67
Arg	TCT	Contig176	33	432082 ..432158	0..0	87.64	62.67
Arg	TCT	Contig176	85	3959198..3959122	0..0	87.64	62.67
Asn	GTT	Contig176	18	136705 ..136779	0..0	81.48	61.60
Asn	GTT	Contig176	19	137017 ..137091	0..0	81.48	61.60
Asn	GTT	Contig176	20	137531 ..137605	0..0	81.48	61.60
Asn	GTT	Contig176	48	450919 ..450993	0..0	81.48	61.60
Asn	GTT	Contig176	63	2259548..2259622	0..0	81.48	61.60
Asn	GTT	Contig176	64	2271078..2271152	0..0	81.48	61.60
Asp	GTC	Contig176	68	5968427..5968351	0..0	90.15	71.89
Asp	GTC	Contig176	72	5968064..5967988	0..0	90.15	71.89
Asp	GTC	Contig176	76	5967700..5967624	0..0	90.15	71.89
Asp	GTC	Contig176	90	3399120..3399044	0..0	90.15	71.89
Cys	GCA	Contig176	24	147548 ..147622	0..0	74.93	46.57
Gln	CTG	Contig176	61	1735367..1735441	0..0	73.48	48.45
Gln	TTG	Contig176	35	432243 ..432317	0..0	73.69	48.33
Gln	TTG	Contig176	41	432818 ..432892	0..0	73.69	48.33
Glu	CTC	Contig176	93	2672676..2672602	0..0	68.86	41.84
Glu	TTC	Contig176	66	5968600..5968526	0..0	74.17	46.64
Glu	TTC	Contig176	70	5968236..5968162	0..0	74.17	46.64
Glu	TTC	Contig176	74	5967873..5967799	0..0	74.17	46.64
Glu	TTC	Contig176	92	3398934..3398860	0..0	74.17	46.64
Gly	CCC	Contig176	27	355049 ..355123	0..0	68.61	51.04
Gly	GCC	Contig176	38	432508 ..432582	0..0	78.68	53.92
Gly	GCC	Contig176	44	433085 ..433159	0..0	78.68	53.92
Gly	TCC	Contig176	29	431574 ..431647	0..0	55.81	29.98
Gly	TCC	Contig176	32	431973 ..432046	0..0	55.81	29.98
Gly	TCC	Contig176	39	432606 ..432679	0..0	55.81	29.98
Gly	TCC	Contig176	45	433183 ..433256	0..0	55.81	29.98
Gly	TCC	Contig176	84	3959307..3959234	0..0	55.81	29.98
His	GTG	Contig176	34	432164 ..432239	0..0	76.83	53.79
His	GTG	Contig176	60	1735288..1735363	0..0	76.83	53.79
His	GTG	Contig176	86	3959115..3959040	0..0	76.83	53.79
Ile	AAT	Contig176	88	3549425..3549338	0..0	52.05	18.33
Ile	GAT	Contig176	22	144177 ..144253	0..0	98.32	74.38
Ile	GAT	Contig176	47	447774 ..447850	0..0	98.32	74.38
Leu	CAA	Contig176	94	1765357..1765271	0..0	58.38	38.63
Leu	GAG	Contig176	59	973865 ..973950	0..0	59.44	31.41
Leu	TAA	Contig176	11	122139 ..122227	0..0	80.68	50.52
Leu	TAA	Contig176	14	122415 ..122503	0..0	80.68	50.52
Leu	TAA	Contig176	16	122671 ..122759	0..0	80.68	50.52
Leu	TAA	Contig176	8	121863 ..121951	0..0	80.68	50.52
Leu	TAG	Contig176	26	354960 ..355044	0..0	64.86	37.20
Leu	TAG	Contig176	37	432418 ..432502	0..0	67.83	41.27
Leu	TAG	Contig176	43	432995 ..433079	0..0	67.83	41.27
Lys	CTT	Contig176	40	432685 ..432760	0..0	91.43	73.66
Lys	CTT	Contig176	79	5747167..5747092	0..0	91.43	73.66
Lys	TTT	Contig176	36	432325 ..432400	0..0	86.94	62.41
Lys	TTT	Contig176	42	432900 ..432975	0..0	86.94	62.41
Lys	TTT	Contig176	62	1735448..1735523	0..0	86.94	62.41
Lys	TTT	Contig176	80	5745572..5745497	0..0	86.94	62.41
Lys	TTT	Contig176	87	3958961..3958886	0..0	86.94	62.41
Met	CAT	Contig176	10	122056 ..122132	0..0	89.58	68.72
Met	CAT	Contig176	12	122249 ..122324	0..0	90.12	65.63
Met	CAT	Contig176	13	122332 ..122408	0..0	89.58	68.72
Met	CAT	Contig176	15	122525 ..122600	0..0	84.17	65.51
Met	CAT	Contig176	17	122781 ..122856	0..0	84.17	65.51
Met	CAT	Contig176	1	14528 ..14604	0..0	91.96	71.26
Met	CAT	Contig176	81	5738075..5737999	0..0	91.96	71.26
Met	CAT	Contig176	9	121973 ..122048	0..0	90.12	65.63
Phe	GAA	Contig176	23	147468 ..147543	0..0	92.00	66.11
Phe	GAA	Contig176	83	5728096..5728021	0..0	92.00	66.11
Phe	GAA	Contig176	89	3399202..3399127	0..0	92.00	66.11
Pro	TGG	Contig176	28	431481 ..431556	0..0	81.11	60.43
Pro	TGG	Contig176	31	431881 ..431956	0..0	81.11	60.43
Pro	TGG	Contig176	65	5724399..5724474	0..0	81.11	60.43
Ser	GCT	Contig176	4	17691 ..17781	0..0	72.03	31.59
Ser	GCT	Contig176	6	18134 ..18224	0..0	72.03	31.59
Ser	GGA	Contig176	78	5886506..5886417	0..0	69.86	33.30
Ser	TGA	Contig176	3	17570 ..17660	0..0	74.68	41.15
Ser	TGA	Contig176	5	18025 ..18115	0..0	74.68	41.15
Thr	GGT	Contig176	25	174419 ..174494	0..0	84.89	63.07
Thr	TGT	Contig176	51	515693 ..515767	0..0	87.39	64.05
Thr	TGT	Contig176	54	515980 ..516054	0..0	87.39	64.05
Thr	TGT	Contig176	69	5968340..5968266	0..0	87.39	64.05
Thr	TGT	Contig176	73	5967977..5967903	0..0	87.39	64.05
Thr	TGT	Contig176	91	3399028..3398954	0..0	87.39	64.05
Trp	CCA	Contig176	56	568733 ..568807	0..0	72.03	52.63
Trp	CCA	Contig176	57	570814 ..570888	0..0	72.03	52.63
Tyr	GTA	Contig176	49	515496 ..515580	0..0	64.27	31.52
Tyr	GTA	Contig176	52	515780 ..515864	0..0	64.27	31.52
Tyr	GTA	Contig176	55	516067 ..516151	0..0	64.27	31.52
Val	TAC	Contig176	50	515590 ..515665	0..0	95.51	79.98
Val	TAC	Contig176	53	515874 ..515949	0..0	95.51	79.98
Val	TAC	Contig176	67	5968509..5968434	0..0	95.51	79.98
Val	TAC	Contig176	71	5968146..5968071	0..0	95.51	79.98
Val	TAC	Contig176	75	5967782..5967707	0..0	95.51	79.98

tRNA Models

Contig176.trna1 (14528-14604)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (14562-14564)	Score: 91.96
HMM Sc=71.26	Sec struct Sc=20.70
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGATCTTTAGCTCAGTTGGTtAGAGCAACCGGCTCATAACCGGTAGGtCTAGGGTTCGAGTCCCTGAAGGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna2 (14606-14681)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (14639-14641)	Score: 91.77
HMM Sc=75.69	Sec struct Sc=16.08
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGGTATAGCTCAGTTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAAGAGTTCGAATCTCTTTATCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna3 (17570-17660)	Length: 91 bp
Type: Ser	Anticodon: TGA at 36-38 (17605-17607)	Score: 74.68
HMM Sc=41.15	Sec struct Sc=33.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGAAAGATGGTCGAGTTGGTttAAGGCACCGGTCTTGAAAACCGGCGTGCGTGTAAGCGTACCTAGGGTTCGAATCCCTATCTTTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

Contig176.trna4 (17691-17781)	Length: 91 bp
Type: Ser	Anticodon: GCT at 35-37 (17725-17727)	Score: 72.03
HMM Sc=31.59	Sec struct Sc=40.44
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGAGGATTACTCAAGTGGCtgAAGAGGCGCCCCTGCTAAGGGCGTAGGTCGGGTAACTGGCGCCCGGGTTCAAATCCCGGATCCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

Contig176.trna5 (18025-18115)	Length: 91 bp
Type: Ser	Anticodon: TGA at 36-38 (18060-18062)	Score: 74.68
HMM Sc=41.15	Sec struct Sc=33.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGAAAGATGGTCGAGTTGGTttAAGGCACCGGTCTTGAAAACCGGCGTGCGTGTAAGCGTACCTAGGGTTCGAATCCCTATCTTTCCGCCA
Str: >>>>>>>..>>>............<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

Contig176.trna6 (18134-18224)	Length: 91 bp
Type: Ser	Anticodon: GCT at 35-37 (18168-18170)	Score: 72.03
HMM Sc=31.59	Sec struct Sc=40.44
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |
Seq: GGAGGATTACTCAAGTGGCtgAAGAGGCGCCCCTGCTAAGGGCGTAGGTCGGGTAACTGGCGCCCGGGTTCAAATCCCGGATCCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<...>>>>>....<<<<<..>>>>>.......<<<<<<<<<<<<....

Contig176.trna7 (29427-29501)	Length: 75 bp
Type: Arg	Anticodon: ACG at 34-36 (29460-29462)	Score: 59.11
HMM Sc=32.18	Sec struct Sc=26.93
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGAGCGTTAGTTAAACGGAtATAACATACCGCTACGGACGGTACAtTGAGGGTTCGATTCCTTCACGCTCTGCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig176.trna8 (121863-121951)	Length: 89 bp
Type: Leu	Anticodon: TAA at 35-37 (121897-121899)	Score: 80.68
HMM Sc=50.52	Sec struct Sc=30.16
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *   
Seq: GCCGAAGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGCGGTGGTTAAACACCGTACCGGTTCGATTCCGGTCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....

Contig176.trna9 (121973-122048)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (122006-122008)	Score: 90.12
HMM Sc=65.63	Sec struct Sc=24.49
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: CGCGGGGTGGAGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAGTCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

Contig176.trna10 (122056-122132)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (122090-122092)	Score: 89.58
HMM Sc=68.72	Sec struct Sc=20.86
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGCGGAATAGCTCAGCTGGCtAGAGCACTCGGTTCATACCCGAGGTGtCGTAGGTTCAAGTCCTATTTCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna11 (122139-122227)	Length: 89 bp
Type: Leu	Anticodon: TAA at 35-37 (122173-122175)	Score: 80.68
HMM Sc=50.52	Sec struct Sc=30.16
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *   
Seq: GCCGAAGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGCGGTGGTTAAACACCGTACCGGTTCGATTCCGGTCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....

Contig176.trna12 (122249-122324)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (122282-122284)	Score: 90.12
HMM Sc=65.63	Sec struct Sc=24.49
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: CGCGGGGTGGAGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAGTCCTGCCCCCGCAACCA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

Contig176.trna13 (122332-122408)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (122366-122368)	Score: 89.58
HMM Sc=68.72	Sec struct Sc=20.86
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGCGGAATAGCTCAGCTGGCtAGAGCACTCGGTTCATACCCGAGGTGtCGTAGGTTCAAGTCCTATTTCCGCTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna14 (122415-122503)	Length: 89 bp
Type: Leu	Anticodon: TAA at 35-37 (122449-122451)	Score: 80.68
HMM Sc=50.52	Sec struct Sc=30.16
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *   
Seq: GCCGAAGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGCGGTGGTTAAACACCGTACCGGTTCGATTCCGGTCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....

Contig176.trna15 (122525-122600)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (122558-122560)	Score: 84.17
HMM Sc=65.51	Sec struct Sc=18.66
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: CGCGGGGTGGAGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAGTCCTGCCTCCGCAACCA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

Contig176.trna16 (122671-122759)	Length: 89 bp
Type: Leu	Anticodon: TAA at 35-37 (122705-122707)	Score: 80.68
HMM Sc=50.52	Sec struct Sc=30.16
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *   
Seq: GCCGAAGTGGCGGAACTGGCaGACGCACAGGACTTAAAATCCTGCGGTGGTTAAACACCGTACCGGTTCGATTCCGGTCTTCGGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>......<<<<..>>>>>.......<<<<<<<<<<<<....

Contig176.trna17 (122781-122856)	Length: 76 bp
Type: Met	Anticodon: CAT at 34-36 (122814-122816)	Score: 84.17
HMM Sc=65.51	Sec struct Sc=18.66
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: CGCGGGGTGGAGCAGTTGGTAGCTCGTCGGGCTCATAACCCGAAGGtCGTAGGTTCAAGTCCTGCCTCCGCAACCA
Str: .>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<.....

Contig176.trna18 (136705-136779)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (136737-136739)	Score: 81.48
HMM Sc=61.60	Sec struct Sc=19.88
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: TCCGCGATAGCTCAATGGTGGAGCACTCGGCTGTTAACCGATAGGtTGGAGGTTCGAGTCCTCTTCGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

Contig176.trna19 (137017-137091)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (137049-137051)	Score: 81.48
HMM Sc=61.60	Sec struct Sc=19.88
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: TCCGCGATAGCTCAATGGTGGAGCACTCGGCTGTTAACCGATAGGtTGGAGGTTCGAGTCCTCTTCGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

Contig176.trna20 (137531-137605)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (137563-137565)	Score: 81.48
HMM Sc=61.60	Sec struct Sc=19.88
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: TCCGCGATAGCTCAATGGTGGAGCACTCGGCTGTTAACCGATAGGtTGGAGGTTCGAGTCCTCTTCGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

Contig176.trna21 (144098-144173)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (144131-144133)	Score: 94.65
HMM Sc=81.24	Sec struct Sc=13.41
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGGTTTAGCTCAGTTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAAGGGTTCGAATCCCTTAATCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna22 (144177-144253)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (144211-144213)	Score: 98.32
HMM Sc=74.38	Sec struct Sc=23.94
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGCTTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCGAGTCCATTTAAGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna23 (147468-147543)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (147501-147503)	Score: 92.00
HMM Sc=66.11	Sec struct Sc=25.89
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGCTCGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCACTGGTTCGATTCCAGTTCGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna24 (147548-147622)	Length: 75 bp
Type: Cys	Anticodon: GCA at 33-35 (147580-147582)	Score: 74.93
HMM Sc=46.57	Sec struct Sc=28.36
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGCGCTATAGCCAAGTGGTAAGGCAGAGGTCTGCAAAACCTTTATtCCCCAGTTCAAATCTGGGTGGCGCCTCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna25 (174419-174494)	Length: 76 bp
Type: Thr	Anticodon: GGT at 34-36 (174452-174454)	Score: 84.89
HMM Sc=63.07	Sec struct Sc=21.82
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCTCACATAGCTCAGTCGGCAGAGCGTCACCTTGGTAAGGTGGAGGtCGTCGGTTCGATTCCGATTGTGAGCTCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna26 (354960-355044)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (354994-354996)	Score: 64.86
HMM Sc=37.20	Sec struct Sc=27.66
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCAGATGTGGCGGAATTGGCaGACGCACTAGACTTAGGATCTAGCGCCTTTTGGTGTAAGGGTTCGACTCCCTTCATCTGCATCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

Contig176.trna27 (355049-355123)	Length: 75 bp
Type: Gly	Anticodon: CCC at 33-35 (355081-355083)	Score: 68.61
HMM Sc=51.04	Sec struct Sc=17.57
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCGGGAATGACTCAATGGTAGAGTGTCACCTTCCCAAGGTGGACGtTGCGGGTTCGAGCCCCGTTTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna28 (431481-431556)	Length: 76 bp
Type: Pro	Anticodon: TGG at 34-36 (431514-431516)	Score: 81.11
HMM Sc=60.43	Sec struct Sc=20.68
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: CGGGGTGTGGCGCAGATGGGAGCGCGCGTGGTTTGGGACCATGAGGtCGCAGGTTCAATCCCTGTCACCCCGACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna29 (431574-431647)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (431606-431608)	Score: 55.81
HMM Sc=29.98	Sec struct Sc=25.83
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCGGGTATCGTATATCGGTAATACTCCAGCCTTCCAAGCTGGAAAGGTGGGTTCGATTCCCACTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig176.trna30 (431798-431874)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (431832-431834)	Score: 87.64
HMM Sc=62.67	Sec struct Sc=24.97
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCGTTTTTAGCTCAGCTGGAtAGAGCAACGCCCTTCTAAGGCGTGGGcCAGGGGTTCGAATCCCTTAAAACGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna31 (431881-431956)	Length: 76 bp
Type: Pro	Anticodon: TGG at 34-36 (431914-431916)	Score: 81.11
HMM Sc=60.43	Sec struct Sc=20.68
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: CGGGGTGTGGCGCAGATGGGAGCGCGCGTGGTTTGGGACCATGAGGtCGCAGGTTCAATCCCTGTCACCCCGACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna32 (431973-432046)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (432005-432007)	Score: 55.81
HMM Sc=29.98	Sec struct Sc=25.83
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCGGGTATCGTATATCGGTAATACTCCAGCCTTCCAAGCTGGAAAGGTGGGTTCGATTCCCACTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig176.trna33 (432082-432158)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (432116-432118)	Score: 87.64
HMM Sc=62.67	Sec struct Sc=24.97
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCGTTTTTAGCTCAGCTGGAtAGAGCAACGCCCTTCTAAGGCGTGGGcCAGGGGTTCGAATCCCTTAAAACGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna34 (432164-432239)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (432197-432199)	Score: 76.83
HMM Sc=53.79	Sec struct Sc=23.04
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GTGAACGTAGTTCAGTTGGTAGAGCGCCAGTTTGTGGCACTGGTTGtCGTGGGTTCGAGTCCCATCGTTCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna35 (432243-432317)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (432275-432277)	Score: 73.69
HMM Sc=48.33	Sec struct Sc=25.36
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: AGGGATATCGCCAAGCGGTAAGGCAATGGACTTTGACTCCATTATtCGTAGGTTCAAATCCTGCTATCCCTGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna36 (432325-432400)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (432358-432360)	Score: 86.94
HMM Sc=62.41	Sec struct Sc=24.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGTTCACTAGCTCAGTCGGTAGAGCACATGACTTTTAATCATGGTGtCCCGGGTTCGATTCCCGGGTGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna37 (432418-432502)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (432452-432454)	Score: 67.83
HMM Sc=41.27	Sec struct Sc=26.56
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCAGGTGTGGCGGAATTGGCaGACGCACTAGACTTAGGATCTAGCGCCTAACGGTGTAAGAGTTCGACTCTCTTCATCTGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

Contig176.trna38 (432508-432582)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (432540-432542)	Score: 78.68
HMM Sc=53.92	Sec struct Sc=24.76
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCGGAAATGACTCAACGGTAGAGTGCCACCTTGCCAAGGTGGAGGcTGCGGGTTCGAATCCCGTTTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna39 (432606-432679)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (432638-432640)	Score: 55.81
HMM Sc=29.98	Sec struct Sc=25.83
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCGGGTATCGTATATCGGTAATACTCCAGCCTTCCAAGCTGGAAAGGTGGGTTCGATTCCCACTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig176.trna40 (432685-432760)	Length: 76 bp
Type: Lys	Anticodon: CTT at 34-36 (432718-432720)	Score: 91.43
HMM Sc=73.66	Sec struct Sc=17.77
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCGTGATTAGCTCAGTTGGTAGAGCACCTGACTCTTAATCAGGGTGtCCAGGGTTCGAATCCCTGATGACGCACCA
Str: >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<....

Contig176.trna41 (432818-432892)	Length: 75 bp
Type: Gln	Anticodon: TTG at 33-35 (432850-432852)	Score: 73.69
HMM Sc=48.33	Sec struct Sc=25.36
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: AGGGATATCGCCAAGCGGTAAGGCAATGGACTTTGACTCCATTATtCGTAGGTTCAAATCCTGCTATCCCTGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna42 (432900-432975)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (432933-432935)	Score: 86.94
HMM Sc=62.41	Sec struct Sc=24.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGTTCACTAGCTCAGTCGGTAGAGCACATGACTTTTAATCATGGTGtCCCGGGTTCGATTCCCGGGTGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna43 (432995-433079)	Length: 85 bp
Type: Leu	Anticodon: TAG at 35-37 (433029-433031)	Score: 67.83
HMM Sc=41.27	Sec struct Sc=26.56
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCAGGTGTGGCGGAATTGGCaGACGCACTAGACTTAGGATCTAGCGCCTAACGGTGTAAGAGTTCGACTCTCTTCATCTGCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>....<<<..>>>>>.......<<<<<<<<<<<<....

Contig176.trna44 (433085-433159)	Length: 75 bp
Type: Gly	Anticodon: GCC at 33-35 (433117-433119)	Score: 78.68
HMM Sc=53.92	Sec struct Sc=24.76
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCGGAAATGACTCAACGGTAGAGTGCCACCTTGCCAAGGTGGAGGcTGCGGGTTCGAATCCCGTTTTCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna45 (433183-433256)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (433215-433217)	Score: 55.81
HMM Sc=29.98	Sec struct Sc=25.83
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCGGGTATCGTATATCGGTAATACTCCAGCCTTCCAAGCTGGAAAGGTGGGTTCGATTCCCACTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig176.trna46 (433303-433379)	Length: 77 bp
Type: Arg	Anticodon: TCG at 35-37 (433337-433339)	Score: 79.88
HMM Sc=64.22	Sec struct Sc=15.66
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCACTTGTAGTTCAGTTGGAtAGAGCGTTGGACTTCGAATCCAGAAGtCGTGGGTTCGAATCCCACCAAGTGTACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna47 (447774-447850)	Length: 77 bp
Type: Ile	Anticodon: GAT at 35-37 (447808-447810)	Score: 98.32
HMM Sc=74.38	Sec struct Sc=23.94
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGGCTTATAGCTCAGCTGGTtAGAGCGCACGCCTGATAAGCGTGAGGtCGATGGTTCGAGTCCATTTAAGCCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna48 (450919-450993)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (450951-450953)	Score: 81.48
HMM Sc=61.60	Sec struct Sc=19.88
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: TCCGCGATAGCTCAATGGTGGAGCACTCGGCTGTTAACCGATAGGtTGGAGGTTCGAGTCCTCTTCGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

Contig176.trna49 (515496-515580)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (515530-515532)	Score: 64.27
HMM Sc=31.52	Sec struct Sc=32.75
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGAGGAATTCCCGAGTGGCcaAAGGGGGCAGACTGTAAATCTGTTACGTTTCGTTtCGATGGTTCGAATCCATCTTCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....

Contig176.trna50 (515590-515665)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (515623-515625)	Score: 95.51
HMM Sc=79.98	Sec struct Sc=15.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGCGCATAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGGGtCACAGGTTCGAGCCCTGTTGTGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna51 (515693-515767)	Length: 75 bp
Type: Thr	Anticodon: TGT at 33-35 (515725-515727)	Score: 87.39
HMM Sc=64.05	Sec struct Sc=23.34
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCTGGCATGGCTCAACGGTAGAGCAGCTGACTTGTAATCAGCAGGtTGTAGGTTCGATTCCTATTGCCAGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna52 (515780-515864)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (515814-515816)	Score: 64.27
HMM Sc=31.52	Sec struct Sc=32.75
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGAGGAATTCCCGAGTGGCcaAAGGGGGCAGACTGTAAATCTGTTACGTTTCGTTtCGATGGTTCGAATCCATCTTCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....

Contig176.trna53 (515874-515949)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (515907-515909)	Score: 95.51
HMM Sc=79.98	Sec struct Sc=15.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGCGCATAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGGGtCACAGGTTCGAGCCCTGTTGTGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna54 (515980-516054)	Length: 75 bp
Type: Thr	Anticodon: TGT at 33-35 (516012-516014)	Score: 87.39
HMM Sc=64.05	Sec struct Sc=23.34
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCTGGCATGGCTCAACGGTAGAGCAGCTGACTTGTAATCAGCAGGtTGTAGGTTCGATTCCTATTGCCAGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna55 (516067-516151)	Length: 85 bp
Type: Tyr	Anticodon: GTA at 35-37 (516101-516103)	Score: 64.27
HMM Sc=31.52	Sec struct Sc=32.75
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGAGGAATTCCCGAGTGGCcaAAGGGGGCAGACTGTAAATCTGTTACGTTTCGTTtCGATGGTTCGAATCCATCTTCCTCCACCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>...<<<...>>>>>.......<<<<<<<<<<<<....

Contig176.trna56 (568733-568807)	Length: 75 bp
Type: Trp	Anticodon: CCA at 33-35 (568765-568767)	Score: 72.03
HMM Sc=52.63	Sec struct Sc=19.40
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: AGGGGTATGGCTCAACGGTAGAGTAGTGGTCTCCAAAACCATTGGtTGTGGGTTCAAATCCTACTGCCCCTGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna57 (570814-570888)	Length: 75 bp
Type: Trp	Anticodon: CCA at 33-35 (570846-570848)	Score: 72.03
HMM Sc=52.63	Sec struct Sc=19.40
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: AGGGGTATGGCTCAACGGTAGAGTAGTGGTCTCCAAAACCATTGGtTGTGGGTTCAAATCCTACTGCCCCTGCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna58 (926564-926639)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (926597-926599)	Score: 94.65
HMM Sc=81.24	Sec struct Sc=13.41
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGGTTTAGCTCAGTTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAAGGGTTCGAATCCCTTAATCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna59 (973865-973950)	Length: 86 bp
Type: Leu	Anticodon: GAG at 34-36 (973898-973900)	Score: 59.44
HMM Sc=31.41	Sec struct Sc=28.03
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCAGGTGTGGTGGAATGGCaGACACGCTATCTTGAGGGGGTAGTGTTCACATGGACGTACGGGTTCAAGTCCCGTCACCTGCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<.>>>>>..<<<<<..>>>>>.......<<<<<<<<<<<<....

Contig176.trna60 (1735288-1735363)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (1735321-1735323)	Score: 76.83
HMM Sc=53.79	Sec struct Sc=23.04
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GTGAACGTAGTTCAGTTGGTAGAGCGCCAGTTTGTGGCACTGGTTGtCGTGGGTTCGAGTCCCATCGTTCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna61 (1735367-1735441)	Length: 75 bp
Type: Gln	Anticodon: CTG at 33-35 (1735399-1735401)	Score: 73.48
HMM Sc=48.45	Sec struct Sc=25.03
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: TGGGATGTCGCCAAGTGGTAAGGCAATGGATTCTGACTCCATTATtCGCAGGTTCGAATCCTGTCATCCTAGCCA
Str: >>>>>>>..>>>.........<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna62 (1735448-1735523)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (1735481-1735483)	Score: 86.94
HMM Sc=62.41	Sec struct Sc=24.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGTTCACTAGCTCAGTCGGTAGAGCACATGACTTTTAATCATGGTGtCCCGGGTTCGATTCCCGGGTGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna63 (2259548-2259622)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (2259580-2259582)	Score: 81.48
HMM Sc=61.60	Sec struct Sc=19.88
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: TCCGCGATAGCTCAATGGTGGAGCACTCGGCTGTTAACCGATAGGtTGGAGGTTCGAGTCCTCTTCGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

Contig176.trna64 (2271078-2271152)	Length: 75 bp
Type: Asn	Anticodon: GTT at 33-35 (2271110-2271112)	Score: 81.48
HMM Sc=61.60	Sec struct Sc=19.88
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: TCCGCGATAGCTCAATGGTGGAGCACTCGGCTGTTAACCGATAGGtTGGAGGTTCGAGTCCTCTTCGCGGAGCCA
Str: >>>>>>>..>>>>.......<<<<..>>>>.......<<<<......>>>>>.......<<<<<<<<<<<<....

Contig176.trna65 (5724399-5724474)	Length: 76 bp
Type: Pro	Anticodon: TGG at 34-36 (5724432-5724434)	Score: 81.11
HMM Sc=60.43	Sec struct Sc=20.68
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: CGGGGTGTGGCGCAGATGGGAGCGCGCGTGGTTTGGGACCATGAGGtCGCAGGTTCAATCCCTGTCACCCCGACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna66 (5968600-5968526)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (5968567-5968565)	Score: 74.17
HMM Sc=46.64	Sec struct Sc=27.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGCTCCTTGGTCAAGCGGTtAAGACACCACCCTTTCACGGTGGTAACAGGGGTTCGATTCCCCTAGGAGTCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig176.trna67 (5968509-5968434)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (5968476-5968474)	Score: 95.51
HMM Sc=79.98	Sec struct Sc=15.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGCGCATAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGGGtCACAGGTTCGAGCCCTGTTGTGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna68 (5968427-5968351)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (5968393-5968391)	Score: 90.15
HMM Sc=71.89	Sec struct Sc=18.26
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGCTCAGTAGCTCAGTTGGTtAGAGTGCCGGCCTGTCACGCCGGAGGtCGAGGGTTCGAGCCCCTTCTGAGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna69 (5968340-5968266)	Length: 75 bp
Type: Thr	Anticodon: TGT at 33-35 (5968308-5968306)	Score: 87.39
HMM Sc=64.05	Sec struct Sc=23.34
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCTGGCATGGCTCAACGGTAGAGCAGCTGACTTGTAATCAGCAGGtTGTAGGTTCGATTCCTATTGCCAGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna70 (5968236-5968162)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (5968203-5968201)	Score: 74.17
HMM Sc=46.64	Sec struct Sc=27.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGCTCCTTGGTCAAGCGGTtAAGACACCACCCTTTCACGGTGGTAACAGGGGTTCGATTCCCCTAGGAGTCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig176.trna71 (5968146-5968071)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (5968113-5968111)	Score: 95.51
HMM Sc=79.98	Sec struct Sc=15.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGCGCATAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGGGtCACAGGTTCGAGCCCTGTTGTGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna72 (5968064-5967988)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (5968030-5968028)	Score: 90.15
HMM Sc=71.89	Sec struct Sc=18.26
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGCTCAGTAGCTCAGTTGGTtAGAGTGCCGGCCTGTCACGCCGGAGGtCGAGGGTTCGAGCCCCTTCTGAGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna73 (5967977-5967903)	Length: 75 bp
Type: Thr	Anticodon: TGT at 33-35 (5967945-5967943)	Score: 87.39
HMM Sc=64.05	Sec struct Sc=23.34
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCTGGCATGGCTCAACGGTAGAGCAGCTGACTTGTAATCAGCAGGtTGTAGGTTCGATTCCTATTGCCAGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna74 (5967873-5967799)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (5967840-5967838)	Score: 74.17
HMM Sc=46.64	Sec struct Sc=27.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGCTCCTTGGTCAAGCGGTtAAGACACCACCCTTTCACGGTGGTAACAGGGGTTCGATTCCCCTAGGAGTCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig176.trna75 (5967782-5967707)	Length: 76 bp
Type: Val	Anticodon: TAC at 34-36 (5967749-5967747)	Score: 95.51
HMM Sc=79.98	Sec struct Sc=15.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGCGCATAGCTCAGCTGGGAGAGCACCTGCCTTACAAGCAGGGGGtCACAGGTTCGAGCCCTGTTGTGCCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna76 (5967700-5967624)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (5967666-5967664)	Score: 90.15
HMM Sc=71.89	Sec struct Sc=18.26
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGCTCAGTAGCTCAGTTGGTtAGAGTGCCGGCCTGTCACGCCGGAGGtCGAGGGTTCGAGCCCCTTCTGAGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna77 (5911142-5911068)	Length: 75 bp
Type: Arg	Anticodon: CCT at 34-36 (5911109-5911107)	Score: 63.88
HMM Sc=46.64	Sec struct Sc=17.24
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCTCCTATAGTTAAATGGAtAGAACAATCCCCTCCTAAGGGATAGATGTGGGTTCGATTCCCGCTGGGAGTACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig176.trna78 (5886506-5886417)	Length: 90 bp
Type: Ser	Anticodon: GGA at 35-37 (5886472-5886470)	Score: 69.86
HMM Sc=33.30	Sec struct Sc=36.56
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    
Seq: GGAGAGATGTCCGAGTGGTcgAAGGAGCACGCCTGGAAAGCGTGTATAGGGGCAACTCTATCAGGGGTTCAAATCCCCTTCTCTCCGCCA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<.>>>>>>....<<<<<<.>>>>>.......<<<<<<<<<<<<....

Contig176.trna79 (5747167-5747092)	Length: 76 bp
Type: Lys	Anticodon: CTT at 34-36 (5747134-5747132)	Score: 91.43
HMM Sc=73.66	Sec struct Sc=17.77
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GCGTGATTAGCTCAGTTGGTAGAGCACCTGACTCTTAATCAGGGTGtCCAGGGTTCGAATCCCTGATGACGCACCA
Str: >>>>.>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<.<<<<....

Contig176.trna80 (5745572-5745497)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (5745539-5745537)	Score: 86.94
HMM Sc=62.41	Sec struct Sc=24.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGTTCACTAGCTCAGTCGGTAGAGCACATGACTTTTAATCATGGTGtCCCGGGTTCGATTCCCGGGTGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna81 (5738075-5737999)	Length: 77 bp
Type: Met	Anticodon: CAT at 35-37 (5738041-5738039)	Score: 91.96
HMM Sc=71.26	Sec struct Sc=20.70
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGATCTTTAGCTCAGTTGGTtAGAGCAACCGGCTCATAACCGGTAGGtCTAGGGTTCGAGTCCCTGAAGGTCCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna82 (5737997-5737922)	Length: 76 bp
Type: Ala	Anticodon: TGC at 34-36 (5737964-5737962)	Score: 91.77
HMM Sc=75.69	Sec struct Sc=16.08
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGGGGTATAGCTCAGTTGGGAGAGCACCTGCCTTGCACGCAGGGGGtCAAGAGTTCGAATCTCTTTATCTCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna83 (5728096-5728021)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (5728063-5728061)	Score: 92.00
HMM Sc=66.11	Sec struct Sc=25.89
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGCTCGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCACTGGTTCGATTCCAGTTCGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna84 (3959307-3959234)	Length: 74 bp
Type: Gly	Anticodon: TCC at 33-35 (3959275-3959273)	Score: 55.81
HMM Sc=29.98	Sec struct Sc=25.83
         *    |    *    |    *    |    *    |    *    |    *    |    *    |   
Seq: GCGGGTATCGTATATCGGTAATACTCCAGCCTTCCAAGCTGGAAAGGTGGGTTCGATTCCCACTACCCGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig176.trna85 (3959198-3959122)	Length: 77 bp
Type: Arg	Anticodon: TCT at 35-37 (3959164-3959162)	Score: 87.64
HMM Sc=62.67	Sec struct Sc=24.97
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCGTTTTTAGCTCAGCTGGAtAGAGCAACGCCCTTCTAAGGCGTGGGcCAGGGGTTCGAATCCCTTAAAACGCACCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna86 (3959115-3959040)	Length: 76 bp
Type: His	Anticodon: GTG at 34-36 (3959082-3959080)	Score: 76.83
HMM Sc=53.79	Sec struct Sc=23.04
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GTGAACGTAGTTCAGTTGGTAGAGCGCCAGTTTGTGGCACTGGTTGtCGTGGGTTCGAGTCCCATCGTTCACCCCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna87 (3958961-3958886)	Length: 76 bp
Type: Lys	Anticodon: TTT at 34-36 (3958928-3958926)	Score: 86.94
HMM Sc=62.41	Sec struct Sc=24.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGTTCACTAGCTCAGTCGGTAGAGCACATGACTTTTAATCATGGTGtCCCGGGTTCGATTCCCGGGTGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna88 (3549425-3549338)	Length: 88 bp
Type: Ile	Anticodon: AAT at 35-37 (3549391-3549389)	Score: 52.05
HMM Sc=18.33	Sec struct Sc=33.72
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    *  
Seq: GGAAAATTGTCAGAGTGGTttAATGGGCTGGCTTAATAAGCTAGTGAGTGTAAAAGCTCCACAGGTTCGAGTCCTGTATTTTCCAACA
Str: >>>>>>>..>>>...........<<<.>>>>>.......<<<<<..>>>......<<<..>>>>>.......<<<<<<<<<<<<....

Contig176.trna89 (3399202-3399127)	Length: 76 bp
Type: Phe	Anticodon: GAA at 34-36 (3399169-3399167)	Score: 92.00
HMM Sc=66.11	Sec struct Sc=25.89
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *
Seq: GGCTCGATAGCTCAGTCGGTAGAGCAGAGGACTGAAAATCCTCGTGtCACTGGTTCGATTCCAGTTCGAGCCACCA
Str: >>>>>>>..>>>>........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna90 (3399120-3399044)	Length: 77 bp
Type: Asp	Anticodon: GTC at 35-37 (3399086-3399084)	Score: 90.15
HMM Sc=71.89	Sec struct Sc=18.26
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GGCTCAGTAGCTCAGTTGGTtAGAGTGCCGGCCTGTCACGCCGGAGGtCGAGGGTTCGAGCCCCTTCTGAGTCGCCA
Str: >>>>>>>..>>>>.........<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna91 (3399028-3398954)	Length: 75 bp
Type: Thr	Anticodon: TGT at 33-35 (3398996-3398994)	Score: 87.39
HMM Sc=64.05	Sec struct Sc=23.34
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GCTGGCATGGCTCAACGGTAGAGCAGCTGACTTGTAATCAGCAGGtTGTAGGTTCGATTCCTATTGCCAGCTCCA
Str: >>>>>>>..>>>>.......<<<<.>>>>>.......<<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna92 (3398934-3398860)	Length: 75 bp
Type: Glu	Anticodon: TTC at 34-36 (3398901-3398899)	Score: 74.17
HMM Sc=46.64	Sec struct Sc=27.53
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGCTCCTTGGTCAAGCGGTtAAGACACCACCCTTTCACGGTGGTAACAGGGGTTCGATTCCCCTAGGAGTCACCA
Str: >>>>>>>..>>>..........<<<.>>>>>.......<<<<<....>>>>>.......<<<<<<<<<<<<....

Contig176.trna93 (2672676-2672602)	Length: 75 bp
Type: Glu	Anticodon: CTC at 34-36 (2672643-2672641)	Score: 68.86
HMM Sc=41.84	Sec struct Sc=27.02
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    
Seq: GGCCCATTGGTCAAGCGGTtAAGACGCCACCCTCTCACGGTGAAAtCAGGAGTTCGATTCTCCTATGGGTCACCA
Str: >>>>>>>..>>>..........<<<..>>>>.......<<<<.....>>>>>.......<<<<<<<<<<<<....

Contig176.trna94 (1765357-1765271)	Length: 87 bp
Type: Leu	Anticodon: CAA at 35-37 (1765323-1765321)	Score: 58.38
HMM Sc=38.63	Sec struct Sc=19.75
         *    |    *    |    *    |    *    |    *    |    *    |    *    |    *    |    * 
Seq: GCCGCTGTGATGGAATTGGCaGACGTGGTGGACTCAAAATCCTCTGGTAGTGATATCGTGCCGGTTCGAATCCGGCCAGCGGCACCA
Str: >>>>>>>..>>>...........<<<.>.>>>.......<<<.<.>>>>.><.<<<<..>>>>>.......<<<<<<<<<<<<....

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