Reference SNP(refSNP) Cluster Report: rs11228206

Reference SNP(refSNP) Cluster Report: rs11228206

refSNP ID: rs11228206
Organism:	human (Homo sapiens)
Molecule Type:	Genomic
Created/Updated in build:	120/129
Map to Genome Build:	36.3

Allele
Variation Class:	SNP: single nucleotide polymorphism
RefSNP Alleles:	C/T
Ancestral Allele:	C
Clinical Association:	unknown

HGVS Names
NM_002335.2:c.91+16990C>T
NT_033903.7:g.13403058C>T

Links

SNP Details are organized in the following sections:

Submitter records for this RefSNP Cluster

The submission ss18490596 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs11228206 during BLAST analysis for the current build.

NCBI Assay ID	Handle\|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss16217390	SC_SNP\|NT_033903.6_13270305		fwd/B	C/T	ccccactgactgacacccctgagtcagtct	caccctggaactgtttctctcactatttgc	11/18/03	11/22/03	120	Genomic			unknown
ss18490596	SC_SNP\|SC-CHR9-12_NA11321-200402.chr11.NT_033903.6_13270305		fwd/B	C/T	ccccactgactgacacccctgagtcagtct	caccctggaactgtttctctcactatttgc	02/20/04	03/04/04	120	Genomic			unknown

Fasta sequence (Legend)

 AGTAAGTGCA AGCCCTCCTT GTCATCCCAG ACCTCAGCCT GCCCATTTAA TGGATGAAGA
 CACTGAGGCC TGGAGGGAAC AGTGACTTCG GAGCCACTCT CCTGGACTCT GCCACTCCTC
 TCGCCTCCCA TATGAACCTG AGTGGCCACA TGACCCTGGG GGAGAGCTAC TCAACTGTCC
 CAAGGAGAGG GTGATGACTG CTGGCCTCCC ACCGGCCATC AGCGCCCCAC TGACTGACAC
 CCCTGAGTCA GTCT
 Y
 CACCCTGGAA CTGTTTCTCT CACTATTTGC CATGGCCTTG GGCCGCTTCC GGGGGCTTGG
 CAAGGCAGGA GGCGTGGAAC CAAGATGGTA TGTAATCAGA ATGCTATATT TTGTTGAAAA
 TAAGAATGTT AGTAATGGGC TGGTTTCTGG CAGGTCAAAC TGGGACTCTG AAATACATAT
 TTTTCTCTGC TCTGCCCTAA

GeneView

GeneView via analysis of contig annotation: LRP5 low density lipoprotein receptor-related protein 5

View variations for gene:

Include clinically associated:

in gene region cSNP has frequency double hit

Group
Label

Contig->mRNA

Gene Model (contig mRNA transcript) Color Legend

reference

NT_033903->NM_002335

function

Group label	Contig-->mRNA-->Protein	Contig position	mRNA orientation	Function


reference	NT_033903->NM_002335->NP_002326	13403058	forward	intron

GeneView: no link established by BLAST analysis of mRNA sequences

Integrated Maps:

NCBI MapViewer: rs11228206 maps exactly once on NCBI human chromosome 11

Chromosome	Contig accession	Contig position	Chromosome position	Hit orientation	Contig Allele	Assembly Type	Group label	Contig label	Neighbor SNP	SNP_flank position
11	NW_001838025.2	969933	64432952	minus	G	alt_assembly_8	HuRef	HuRef	view	254
11	NW_925106.1	13780178	65432102	plus	C	alt_assembly_1	Celera	Celera	view	254
11	NT_033903.7	13403058	67853839	plus	C	ref_assembly	reference	reference	view	254

NCBI Resource Links

Submitter-Referenced
GenBank
NT_033903

dbSNP Blast Analysis
GenBank HTGS Finished:
AP000807.4 AP002366.4

Population Diversity

There is no frequency data.

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
	UNKNOWN	UNKNOWN	UNKNOWN

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Revised: May 25, 2006 1:38 PM .