CAC0932    KOGs   raw       Genbank        Blink

	5 proteins	S	COG5583	Uncharacterized small protein	Help
	1 from	query genome Clostridium acetobutylicum (Clostridiales | Clostridia)
		CAC0932

        56 letters (r)
   0     0  191 = |||  1 CAC0932 (56)          =
  -7    -1   84 =   |  3 BH1485 (48)           =
 -11    22   68 =   |  4 BH3126 (67)           =
  -3     7   61 =      5 PA0284 (60)           =

BLASTP 2.2.4 [Aug-26-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= CAC0932
         (56 letters)

Database: myva 
           192,987 sequences; 59,019,183 total letters




                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

CAC0932                                                                78   4e-15
BH1485                                                                 37   0.009
BH3126                                                                 31   0.69 
PA0284                                                                 28   4.5  

# >CAC0932
#           Length = 56
# 
#  Score = 78.2 bits (191), Expect = 4e-15
#  Identities = 56/56 (100%), Positives = 56/56 (100%)
# 
# Query: 1  MNDLDYKINKSKTIKGERYEEKISKLLKEIKYGSITLIIQDGVVIQIEASQKIRLR 56
#           MNDLDYKINKSKTIKGERYEEKISKLLKEIKYGSITLIIQDGVVIQIEASQKIRLR
# Sbjct: 1  MNDLDYKINKSKTIKGERYEEKISKLLKEIKYGSITLIIQDGVVIQIEASQKIRLR 56
# 
# 
# >BH1485
#           Length = 48
# 
#  Score = 37.0 bits (84), Expect = 0.009
#  Identities = 18/35 (51%), Positives = 30/35 (85%)
# 
# Query: 21 EKISKLLKEIKYGSITLIIQDGVVIQIEASQKIRL 55
#           +K+  LL+ +KYGS+T+++Q+G VIQIE ++K+RL
# Sbjct: 14 DKVKDLLEGLKYGSVTIVVQNGKVIQIEKNEKVRL 48
# 
# 
# >BH3126
#           Length = 67
# 
#  Score = 30.8 bits (68), Expect = 0.69
#  Identities = 13/34 (38%), Positives = 27/34 (79%)
# 
# Query: 21 EKISKLLKEIKYGSITLIIQDGVVIQIEASQKIR 54
#           E+I K +++IKYGS+ + I +  ++QI+A++++R
# Sbjct: 10 EEIKKAIEKIKYGSVLITIHEDQIMQIDATERVR 43
# 
# 
# >PA0284
#           Length = 60
# 
#  Score = 28.1 bits (61), Expect = 4.5
#  Identities = 11/35 (31%), Positives = 24/35 (68%)
# 
# Query: 22 KISKLLKEIKYGSITLIIQDGVVIQIEASQKIRLR 56
#           +I   L+ +++G++ + + +G V+QIE  +K RL+
# Sbjct: 19 EIQSALRGLRFGAVEITVHNGQVVQIERKEKFRLQ 53
# 
# 
  Database: myva
    Posted date:  Sep 16, 2002  2:25 PM
  Number of letters in database: 59,019,183
  Number of sequences in database:  192,987
  
Lambda     K      H
   0.315    0.137    0.346 

Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,359,889
Number of Sequences: 192987
Number of extensions: 141943
Number of successful extensions: 598
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 587
Number of HSP's gapped (non-prelim): 12
length of query: 56
length of database: 59,019,183
effective HSP length: 32
effective length of query: 24
effective length of database: 52,843,599
effective search space: 1268246376
effective search space used: 1268246376
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.9 bits)
S2: 58 (26.9 bits)
S2: 58 (26.9 bits)