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BUILD 129
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Reference SNP(refSNP) Cluster Report: rs5986861          
refSNP ID: rs5986861
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:114/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:C/T
Ancestral Allele:Not available
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss8279141 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs5986861 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss8279141SC_SNP|NT_025949.8_478936fwd/BC/Tctagtggagtcctcaggaagggctgatgggacataatttcctaagttcctgtctgttttt04/17/0310/10/03114Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs5986861|allelePos=401|totalLen=801|taxid=9606|snpclass=1|alleles='C/T'|mol=Genomic|build=114
 tactatctgg tccactagtt tgtttttaac ccccagtctc cttttaacac tcatctactg
 ccttatgaaa aaaaaaaagt ttattctctt tttctttcta tctctctcac ttctcttatt
 ttacttgcac tatttctttt tttccacaat ataaaataaa tgcacgttag tcattttcct
 tgcttcacct tcattttagt attagatacc aaatgcttgc catcagatgt tgtagggaag
 attttcctgt cgttacctgt ggaatcacaa tcccagttta ccctttagAA TATAAgttag
 caaacgtttt ctgtaaagag ccatatggta aatattccaa ccagtgggcc ataGTTTGCA
 GACCCTTGct ctagtggagt cctcaggaag ggctgatggg
 Y
 acataatttc ctaagttcct gtctgttttt ctataagctg tgatattagt gaaggatcgg
 ctgagctgga tatcaaatca gtacttcaga cgtttttctc agcccatttc tgagtttaga
 gttttaagta atattctaat tcaaggcagg ttttatatcc tcaaatgctt gtttgaatgg
 aattaattct gtttgcaggg ttgacgtaca gttccttctg tttcatggtt gtttAATATG
 TGTGAAATTT Gtcttctgct ctttttctct ttctggaatg tttttgtaag gaattatcct
 tccttttgtt catttttatg atattggatt gttttaccag attcctattt tacaggtgct
 attttctgtc agtgtagaaa aattcagGCC TGAAATTTAC

  GeneView back to top
GeneView via analysis of contig annotation: NXF2 nuclear RNA export factor 2
View variations for gene:
Include clinically associated: in gene region cSNP has frequency double hit
Group
Label		Contig->mRNAGene Model (contig mRNA transcript) Color Legend
HuRefNW_001842388->NM_017809
function
HuRefNW_001842388->NM_022053
function
"
Group
label		Contig-->mRNA-->ProteinContig
position		mRNA
orientation		mRNA
pos		FunctiondbSNP
allele		Protein
residue		Codon
pos		Amino acid
pos
HuRefNW_001842388->NM_017809->NP_06027988114reverseintron
HuRefNW_001842388->NM_022053->NP_07133688114reverseintron

GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  See all two hits of rs5986861 on the  NCBI human genome map
!WARNING: Several map positions found! The map position is found by blasting with the contig sequences.
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
XNW_001842388.18811491349951minusAalt_assembly_8HuRefHuRefview400
XNT_011651.1624808682101399030plusTref_assemblyreferencereferenceview400
XNT_011651.1624980969101571317minusAref_assemblyreferencereferenceview400
XNW_927716.193966102123285minusAalt_assembly_1CeleraCeleraview400

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_025949
dbSNP Blast Analysis
GenBank HTGS Finished:
AL590069.5 Z70226.1

  Population Diversity back to top
There is no frequency data.

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
UNKNOWNUNKNOWNUNKNOWN

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Revised: May 25, 2006 1:38 PM .