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Sample GSM109660 Query DataSets for GSM109660
Status Public on May 24, 2006
Title CC2_14028s_ChIP_WN442_pHNS-HA_antiHA__6D073_2
Sample type genomic
 
Channel 1
Source Name 14028s gDNA
Organism(s) Salmonella enterica subsp. enterica serovar Typhimurium
Characteristics Salmonella typhimurium 14028s genomic DNA
Extracted molecule genomic DNA
Extraction protocol SIGMA GenElute bacterial gDNA extraction kit
Label Cy3
 
Channel 2
Source Name IP_14028sRpoSlowhns- pWN442-pHNS-HA_antiHA
Organism(s) Salmonella enterica subsp. enterica serovar Typhimurium
Characteristics Salmonella typhimurium 14028s-rpoSlow-hns mutant complemented with pWN442-pHNS-HA IP'd with anti-HA
Extracted molecule genomic DNA
Extraction protocol IP using anti-HA
Label Cy5
 
 
Description User - Pcheng
Date_of_Scan = Tue Sep 13 13:42:42 2005
Data processing Quantarray 3.0, adaptive quantitation, protocol STv6_01_050607.pro
 
Submission date May 21, 2006
Contact name Michael McClelland
E-mail(s) mcclelland.michael@gmail.com
Phone 858-450-5990
Fax 858-550-3998
Organization name Sidney Kimmel Cancer Center
Department
Street address 10835 Road to the Cure
City San Diego
State/province CA
ZIP/Postal code 92121
Country USA
 
Platform ID GPL3788
Series (1)
GSE4881 CC2_Navarre_14028srpoSlowhns-_IP_pHNStagged_antiHA

Data table header descriptions
ID_REF Number
X_LOCATION X-coordinate of spot
Y_LOCATION Y-coordinate of spot
CH1_MEAN Channel 1 mean
CH1_BKD_MEAN Channel 1 mean background
CH1_SD Channel 1 standard deviation
CH1_BKD_SD Channel 1 background standard deviation
CH1_DIAMETER Channel 1 diameter
CH1_AREA Channel 1 area
CH1_FOOTPRINT Channel 1 footprint
CH1_CIRCULARITY Channel 1 circularity
CH1_SPOT_UNIFORMITY Channel 1 spot uniformity
CH1_BKD_UNIFORMITY Channel 1 background uniformity
CH1_SIGNAL_NOISE_RATIO Channel 1 signal to noise ratio
CH1_CONFIDENCE Channel 1 confidence
CH2_MEAN Channel 2 mean
CH2_BKD_MEAN Channel 2 mean background
CH2_SD Channel 2 standard deviation
CH2_BKD_SD Channel 2 background standard deviation
CH2_DIAMETER Channel 2 diameter
CH2_AREA Channel 2 area
CH2_FOOTPRINT Channel 2 footprint
CH2_CIRCULARITY Channel 2 circularity
CH2_SPOT_UNIFORMITY Channel 2 spot uniformity
CH2_BKD_UNIFORMITY Channel 2 background uniformity
CH2_SIGNAL_NOISE_RATIO Channel 2 signal to noise ratio
CH2_CONFIDENCE Channel 2 confidence
CH1_DIAMETER_FILTER Channel 1 diameter filter
CH1_AREA_FILTER Channel 1 area filter
CH1_CIRCULARITY_FILTER Channel 1 circularity filter
CH1_SPOT_UNIFORMITY_FILTER Channel 1 spot uniformity filter
CH1_BKD_UNIFORMITY_FILTER Channel 1 background uniformity filter
CH1_SIGNAL_NOISE_RATIO_FILTER Channel 1 signal to noise ratio filter
CH2_DIAMETER_FILTER Channel 2 diameter filter
CH2_AREA_FILTER Channel 2 area filter
CH2_CIRCULARITY_FILTER Channel 2 circularity filter
CH2_SPOT_UNIFORMITY_FILTER Channel 2 spot uniformity filter
CH2_BKD_UNIFORMITY_FILTER Channel 2 background uniformity filter
CH2_SIGNAL_NOISE_RATIO_FILTER Channel 2 signal to noise ratio filter
IGNORE_FILTER Ignore filter
CH1_BKD_CORR Channel 1 background correlation
CH2_BKD_CORR Channel 2 background correlation
CH1%_OF_TOTAL Channel 1 % of total
CH2%_OF_TOTAL Channel 2 % of total
PRE-VALUE ch1 % of total / ch2 % of total
VALUE log of ch1 % of total / ch2 % of total

Data table
ID_REF X_LOCATION Y_LOCATION CH1_MEAN CH1_BKD_MEAN CH1_SD CH1_BKD_SD CH1_DIAMETER CH1_AREA CH1_FOOTPRINT CH1_CIRCULARITY CH1_SPOT_UNIFORMITY CH1_BKD_UNIFORMITY CH1_SIGNAL_NOISE_RATIO CH1_CONFIDENCE CH2_MEAN CH2_BKD_MEAN CH2_SD CH2_BKD_SD CH2_DIAMETER CH2_AREA CH2_FOOTPRINT CH2_CIRCULARITY CH2_SPOT_UNIFORMITY CH2_BKD_UNIFORMITY CH2_SIGNAL_NOISE_RATIO CH2_CONFIDENCE CH1_DIAMETER_FILTER CH1_AREA_FILTER CH1_CIRCULARITY_FILTER CH1_SPOT_UNIFORMITY_FILTER CH1_BKD_UNIFORMITY_FILTER CH1_SIGNAL_NOISE_RATIO_FILTER CH2_DIAMETER_FILTER CH2_AREA_FILTER CH2_CIRCULARITY_FILTER CH2_SPOT_UNIFORMITY_FILTER CH2_BKD_UNIFORMITY_FILTER CH2_SIGNAL_NOISE_RATIO_FILTER IGNORE_FILTER CH1_BKD_CORR CH2_BKD_CORR CH1%_OF_TOTAL CH2%_OF_TOTAL PRE-VALUE VALUE
1 2150 22050 29259 480 7691.477051 829.734375 97.066856 8100 20.695826 0.97046 0.682846 0.976952 35.263092 0.780396 1904 0 1329.300171 413.877899 97.066856 7900 20.695826 0.97046 0.955711 0.987099 4.600391 0.848494 1 1 1 0 1 1 1 1 1 1 1 1 1 28779 1904 0.02491678 0.018517319 1.345593253 0.128913801
2 2380 22050 47697 211 6245.791504 1190.024292 97.066856 8100 15.718915 0.97046 0.75399 0.9813 40.080694 0.835993 899 0 909.152954 384.923187 94.069214 5500 15.718915 0.948274 0.97374 0.990829 2.335531 0.622808 1 1 1 1 1 1 1 1 1 1 1 0 1 47486 899 0.041113249 0.008743209 4.702306595 0.672310942
3 2620 22050 13833 80 3190.191895 390.688019 97.066856 8100 20.695826 0.97046 0.89698 0.989433 35.406768 0.93132 14126 0 4064.235107 401.77597 97.066856 8100 20.695826 0.97046 0.842476 0.987457 35.158897 0.894984 1 1 1 1 1 1 1 1 1 1 1 1 1 13753 14126 0.01190731 0.137382168 0.086672892 -1.062116713
4 2850 22050 27030 197 6905.89502 545.122559 97.066856 8100 15.718915 0.97046 0.792259 0.987259 49.58518 0.861506 1791 0 1286.211914 254.244156 92.705818 7600 15.718915 0.936975 0.961319 0.993324 7.04441 0.889434 1 1 1 1 1 1 1 1 1 1 1 1 1 26833 1791 0.023231938 0.017418339 1.333763077 0.12507869
5 3090 22050 3332 85 3475.027588 486.896576 97.066856 8100 20.695826 0.97046 0.902046 0.988365 6.843342 0.886921 7144 0 5386.845703 236.417572 97.066856 8100 20.695826 0.97046 0.827698 0.991966 30.21772 0.885132 1 1 1 1 1 1 1 1 1 1 1 1 1 3247 7144 0.002811244 0.069478848 0.040461864 -1.392954112
6 3320 22050 16705 171 8397.910156 676.495728 97.066856 8100 15.718915 0.97046 0.758316 0.982002 24.69343 0.838877 573 0 611.08728 386.959167 86.30442 4200 15.718915 0.882504 0.984619 0.987137 1.480776 0.394874 1 1 1 1 1 1 1 1 1 1 1 0 1 16534 573 0.014315092 0.005572702 2.568788552 0.409728357
7 3560 22050 48663 5 6454.664063 564.252747 97.066856 8100 20.695826 0.97046 0.753586 0.985306 86.243267 0.835724 859 0 752.112366 442.619659 91.322075 6300 20.695826 0.920034 0.974968 0.985741 1.940718 0.517525 1 1 1 1 1 1 1 1 1 1 1 0 1 48658 859 0.042127963 0.00835419 5.042734881 0.702666136
8 3790 22050 44918 0 7449.399414 459.370758 97.066856 8100 15.718915 0.97046 0.700531 0.987122 97.781583 0.800354 598 0 727.602661 489.658142 94.406982 6000 15.718915 0.953853 0.976616 0.982994 1.22126 0.325669 1 1 1 1 1 1 1 1 1 1 1 0 1 44918 598 0.038889882 0.005815839 6.686891439 0.825224273
9 4030 22060 32633 235 6960.428711 465.892548 97.066856 8100 22.219208 0.97046 0.752945 0.988205 70.044048 0.835297 559 0 913.957336 400.776123 91.322075 5500 22.219208 0.937706 0.977341 0.98967 1.394794 0.371945 1 1 1 1 1 1 1 1 1 1 1 0 1 32398 559 0.0280501 0.005436545 5.159545407 0.712611439
10 4260 22060 29934 185 8921.214844 493.914856 97.066856 8100 17.676546 0.97046 0.693016 0.986656 60.605587 0.792018 598 0 606.87854 471.359192 86.30442 4600 17.676546 0.917605 0.98439 0.986099 1.268672 0.338312 1 1 1 0 1 1 1 1 1 1 1 0 1 29749 598 0.025756603 0.005815839 4.428699706 0.646276233
11 4500 22060 4914 103 3367.426514 629.3396 94.406982 7900 22.219208 0.943981 0.904579 0.98288 7.808185 0.898044 4791 0 3810.78833 514.413574 97.066856 8100 22.219208 0.97046 0.884277 0.984924 9.313518 0.91161 1 1 1 1 1 1 1 1 1 1 1 1 1 4811 4791 0.004165351 0.046594788 0.089395206 -1.048685768
12 4730 22060 14323 203 8941.759766 536.947815 97.066856 8100 17.676546 0.97046 0.738319 0.987816 26.674845 0.825546 542 0 1114.152222 467.157867 88.129242 4500 17.676546 0.910922 0.957443 0.986488 1.160207 0.309389 1 1 1 1 1 1 1 1 1 1 1 0 1 14120 542 0.012225057 0.005271212 2.319212034 0.365340456
13 4970 22060 37450 164 9820.866211 380.889679 97.066856 8100 22.219208 0.97046 0.606316 0.990562 98.322433 0.692932 688 0 732.337585 406.720245 93.389999 4700 22.219208 0.941627 0.977219 0.988457 1.69158 0.451088 1 1 1 0 1 1 1 1 1 1 1 0 1 37286 688 0.032282117 0.006691132 4.824612111 0.683462403
14 5200 22060 50555 12 10246.24512 380.322327 97.066856 8100 17.676546 0.97046 0.610497 0.987152 132.926722 0.69771 798 0 801.026611 564.118591 93.389999 7100 17.676546 0.941091 0.976738 0.981682 1.414596 0.377226 1 1 1 0 1 1 1 1 1 1 1 0 1 50543 798 0.043759991 0.007760935 5.63849462 0.75116317
15 5440 22060 31431 88 6356.395508 536.04071 97.066856 8100 22.219208 0.97046 0.746452 0.981621 58.635472 0.830968 2007 0 1362.064453 316.154541 97.066856 8000 22.219208 0.97046 0.960999 0.992569 6.348161 0.880213 1 1 1 1 1 1 1 1 1 1 1 1 1 31343 2007 0.027136684 0.019519044 1.390267069 0.143098236
16 5670 22060 26671 294 7540.515625 682.875183 97.066856 8100 17.676546 0.97046 0.723358 0.978462 39.056918 0.815572 21334 0 6814.398926 223.017395 97.066856 8100 17.676546 0.97046 0.770233 0.99472 95.660699 0.846822 1 1 1 1 1 1 1 1 1 1 1 1 1 26377 21334 0.022837135 0.207483448 0.11006726 -0.958341846
17 5910 22060 17591 41 8311.226563 588.618896 97.066856 8100 22.219208 0.97046 0.752754 0.984581 29.885211 0.835169 449 0 657.658997 346.891602 82.147255 4600 22.219208 0.909618 0.975151 0.991501 1.294352 0.345161 1 1 1 1 1 1 1 1 1 1 1 0 1 17550 449 0.015194742 0.004366742 3.479652106 0.541535825
18 6140 22060 14727 49 7108.330078 523.106262 97.066856 8100 17.676546 0.97046 0.781738 0.987587 28.15298 0.854492 7035 0 4172.885254 548.427856 95.078926 8000 17.676546 0.950954 0.870476 0.982285 12.827576 0.913651 1 1 1 1 1 1 1 1 1 1 1 1 1 14678 7035 0.012708172 0.068418771 0.18574102 -0.731092173
19 6380 22060 30848 22 6060.973145 497.669525 97.066856 8100 22.219208 0.97046 0.73658 0.9841 61.984909 0.824387 2179 0 1456.88208 522.736877 95.078926 8000 22.219208 0.950954 0.952187 0.984428 4.168445 0.837885 1 1 1 1 1 1 1 1 1 1 1 1 1 30826 2179 0.026689067 0.021191827 1.259403771 0.10016499
20 2140 22290 27721 225 5190.894043 544.046753 97.066856 8100 11.114826 0.97046 0.833908 0.986694 50.953342 0.889272 19626 0 5116.802246 460.454498 97.066856 8100 11.114826 0.97046 0.82325 0.986679 42.623104 0.882167 1 1 1 1 1 1 1 1 1 1 1 1 1 27496 19626 0.023805962 0.190872323 0.124721915 -0.90405723

Total number of rows: 5776

Table truncated, full table size 1678 Kbytes.




Supplementary data files not provided
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