|
Status |
Public on May 24, 2006 |
Title |
CC2_14028s_ChIP_WN442_pHNS-HA_antiHA__6D073_2 |
Sample type |
genomic |
|
|
Channel 1 |
Source Name |
14028s gDNA
|
Organism(s) |
Salmonella enterica subsp. enterica serovar Typhimurium |
Characteristics |
Salmonella typhimurium 14028s genomic DNA
|
Extracted molecule |
genomic DNA |
Extraction protocol |
SIGMA GenElute bacterial gDNA extraction kit
|
Label |
Cy3
|
|
|
Channel 2 |
Source Name |
IP_14028sRpoSlowhns- pWN442-pHNS-HA_antiHA
|
Organism(s) |
Salmonella enterica subsp. enterica serovar Typhimurium |
Characteristics |
Salmonella typhimurium 14028s-rpoSlow-hns mutant complemented with pWN442-pHNS-HA IP'd with anti-HA
|
Extracted molecule |
genomic DNA |
Extraction protocol |
IP using anti-HA
|
Label |
Cy5
|
|
|
|
Description |
User - Pcheng Date_of_Scan = Tue Sep 13 13:42:42 2005
|
Data processing |
Quantarray 3.0, adaptive quantitation, protocol STv6_01_050607.pro
|
|
|
Submission date |
May 21, 2006 |
Contact name |
Michael McClelland |
E-mail(s) |
mcclelland.michael@gmail.com
|
Phone |
858-450-5990
|
Fax |
858-550-3998
|
Organization name |
Sidney Kimmel Cancer Center
|
Department |
|
Street address |
10835 Road to the Cure
|
City |
San Diego |
State/province |
CA |
ZIP/Postal code |
92121 |
Country |
USA |
|
|
Platform ID |
GPL3788 |
Series (1) |
GSE4881 |
CC2_Navarre_14028srpoSlowhns-_IP_pHNStagged_antiHA |
|
Data table header descriptions |
ID_REF |
Number |
X_LOCATION |
X-coordinate of spot |
Y_LOCATION |
Y-coordinate of spot |
CH1_MEAN |
Channel 1 mean |
CH1_BKD_MEAN |
Channel 1 mean background |
CH1_SD |
Channel 1 standard deviation |
CH1_BKD_SD |
Channel 1 background standard deviation |
CH1_DIAMETER |
Channel 1 diameter |
CH1_AREA |
Channel 1 area |
CH1_FOOTPRINT |
Channel 1 footprint |
CH1_CIRCULARITY |
Channel 1 circularity |
CH1_SPOT_UNIFORMITY |
Channel 1 spot uniformity |
CH1_BKD_UNIFORMITY |
Channel 1 background uniformity |
CH1_SIGNAL_NOISE_RATIO |
Channel 1 signal to noise ratio |
CH1_CONFIDENCE |
Channel 1 confidence |
CH2_MEAN |
Channel 2 mean |
CH2_BKD_MEAN |
Channel 2 mean background |
CH2_SD |
Channel 2 standard deviation |
CH2_BKD_SD |
Channel 2 background standard deviation |
CH2_DIAMETER |
Channel 2 diameter |
CH2_AREA |
Channel 2 area |
CH2_FOOTPRINT |
Channel 2 footprint |
CH2_CIRCULARITY |
Channel 2 circularity |
CH2_SPOT_UNIFORMITY |
Channel 2 spot uniformity |
CH2_BKD_UNIFORMITY |
Channel 2 background uniformity |
CH2_SIGNAL_NOISE_RATIO |
Channel 2 signal to noise ratio |
CH2_CONFIDENCE |
Channel 2 confidence |
CH1_DIAMETER_FILTER |
Channel 1 diameter filter |
CH1_AREA_FILTER |
Channel 1 area filter |
CH1_CIRCULARITY_FILTER |
Channel 1 circularity filter |
CH1_SPOT_UNIFORMITY_FILTER |
Channel 1 spot uniformity filter |
CH1_BKD_UNIFORMITY_FILTER |
Channel 1 background uniformity filter |
CH1_SIGNAL_NOISE_RATIO_FILTER |
Channel 1 signal to noise ratio filter |
CH2_DIAMETER_FILTER |
Channel 2 diameter filter |
CH2_AREA_FILTER |
Channel 2 area filter |
CH2_CIRCULARITY_FILTER |
Channel 2 circularity filter |
CH2_SPOT_UNIFORMITY_FILTER |
Channel 2 spot uniformity filter |
CH2_BKD_UNIFORMITY_FILTER |
Channel 2 background uniformity filter |
CH2_SIGNAL_NOISE_RATIO_FILTER |
Channel 2 signal to noise ratio filter |
IGNORE_FILTER |
Ignore filter |
CH1_BKD_CORR |
Channel 1 background correlation |
CH2_BKD_CORR |
Channel 2 background correlation |
CH1%_OF_TOTAL |
Channel 1 % of total |
CH2%_OF_TOTAL |
Channel 2 % of total |
PRE-VALUE |
ch1 % of total / ch2 % of total |
VALUE |
log of ch1 % of total / ch2 % of total |