NCBI

NLM

PubMed Nucleotide Protein Genome Structure PopSet Taxonomy OMIM Books SNP
Search for SNP on NCBI Reference Assembly
Spacer gif
BUILD 129
Have a question about dbSNP? Try searching the SNP FAQ Archive!

Spacer gif
Reference SNP(refSNP) Cluster Report: rs785843          
refSNP ID: rs785843
Organism:human (Homo sapiens)
Molecule Type:Genomic
Created/Updated in build:86/129
Map to Genome Build:36.3
Allele
Variation Class:SNP:
single nucleotide polymorphism
RefSNP Alleles:A/C
Ancestral Allele:A
Clinical Association:unknown
HGVS Names
Links

SNP Details are organized in the following sections:
Submission Fasta Resource GeneView Map Diversity Validation

  Submitter records for this RefSNP Cluster back to top
The submission ss10528484 has the longest flanking sequence of all cluster members and was used to instantiate sequence for rs785843 during BLAST analysis for the current build.

NCBI
Assay ID		Handle|Submitter IDValidation
Status		ss to rs
Orientation
/Strand		Alleles5' Near Seq 30 bp3' Near Seq 30 bpEntry
Date		Update
Date		Build
Added		Molecule
Type		Freq
Warning		Ancestral
Allele		Success
Rate
ss943032KWOK|OVLP-000804-359825fwd/TA/Ctattgtatgattctatttatgtaaaattctgaaaatgcaaaggatctacagtgacagaaa09/01/0010/10/0386Genomic99 %
ss3485116SC_JCM|AL356244.12_134694fwd/TA/Ctattgtatgattctatttatgtaaaattctgaaaatgcaaaggatctacagtgacagaaa09/24/0110/10/03103Genomicunknown
ss10528484BCM_SSAHASNP|chr9.NT_008413.15_252617byFreqfwd/TA/Ctattgtatgattctatttatgtaaaattctgaaaatgcaaaggatctacagtgacagaaa06/29/0310/25/06116Genomicunknown
ss12008651WI_SSAHASNP|chr9.NT_008413.15_252617fwd/TA/Ctattgtatgattctatttatgtaaaattctgaaaatgcaaaggatctacagtgacagaaa07/04/0310/10/03116Genomicunknown
ss12925347SC_SNP|NT_008413.15_252617fwd/TA/Ctattgtatgattctatttatgtaaaattctgaaaatgcaaaggatctacagtgacagaaa10/21/0310/31/03119Genomicunknown
ss16282998SC_SNP|NT_008413.16_252617fwd/TA/Ctattgtatgattctatttatgtaaaattctgaaaatgcaaaggatctacagtgacagaaa11/18/0311/22/03120Genomicunknown
ss93991594BCMHGSC_JDW|JWB-2543099fwd/TA/Ctattgtatgattctatttatgtaaaattctgaaaatgcaaaggatctacagtgacagaaa02/26/0803/05/08129Genomicunknown

  Fasta sequence   (Legend) back to top
>gnl|dbSNP|rs785843|allelePos=1404|totalLen=2203|taxid=9606|snpclass=1|alleles='A/C'|mol=Genomic|build=130
 AAAATATCTT ACATGCTCAA AATAAAAATA GAATAGCTTA TATAACTATG TCTAAATATT
 ACATGTAGTT TTCTTCTCTG GCTATTTTCT TTTTGGtttt tatataattt tttaaaatCC
 ACTTACTTAG CCCAGGCACA TAAATGGAAA GAAAGATATG CTTAAAATTA TGTTATTTGC
 AAAAAcaaat atttagatgt tttagagcta gtatgttttt gttggtttct agtttagttc
 tacatggcat cagactagct actctatatg atttctggac ctttgcaatt tgttaagatt
 tgttttatgg tcggggatat ggtcaatatg taaatgttta atgtgtgcaa gaagaatgtg
 tactctgaag ttaggcatag tgttttctgt atatgtcaat tagcacaagt ctgtttatca
 tgttcaagct ctgtgtatct ctgggttttt ttaatctgca tgatAGAACA GAAGTATGTT
 TGAaactttt attgtagttg tggatgtaat atttttcctc tacttttgca gttcttgctt
 tatatatttt gagcctatat tacttggtac atacatattt agaattgttg tgtcttcctg
 gtggattgcc ctttgattat ttaggaaatg tctctctctt cggtaatgct tcttaaagtc
 cattttgtct gatagtacta tagctacctc agctttcttt tggctaggtt tcataacttt
 ttaaattctt tcactgtcag tctttttatg tccttatatt taaaatgtgt cAaaagaaag
 aaggagaaag aaagaaagaa agaaagaaag aaagaaagaa agaCACcgcg atttacctat
 gttacaaaca tgtatatgta accctaaacc taaaataaaa gttaaatata aataaaTAaa
 gtgtctcttc atgaaaactt tcttagcatc attagtcatt agggaaatgc aaattaaaaa
 cacaatgaga taccaccaca tacaacatgt ctagtataat ggctaaaatg aaaaatacta
 acaacaccaa gtattgttga acatatggaa aaactggaac actgattatg ggagtataca
 accatgttgt aaaacacttt aacTGGTCat ttacccaaga ggaatgaaag aatgtatcca
 tataaagatt tgaacacaaa tgtttacagc aactttattt gtaataggta aaaactgaaa
 acaactcaaa tgtccataga cagatgaatg gatttaaaaa aaaccatgtt atatccatac
 aaaggaatac tcctctataa taaaagggag taaactacta atacacagtg caatatagat
 ggattgcaaa atgattctgt tgaatggaag aagccagacc aaaaaaagag atatattgta
 tgattctatt tatgtaaaat tct
 M
 gaaaatgcaa aggatctaca gtgacagaaa gcaaattagt agttaccagg agacggaggg
 taaaaattaa gaaggggcat gaagaaactt ttttattgta gtaatggtct catgggtcta
 tacgtatgtc aaagcttatc taattgtata ctttaaatat gtgcagttca ttgccagcta
 attatactca atctgttttt aaaaGTAAAA TGTGCTTCTT ATAAGTAACA ATTTTTTAAA
 ATGTAGTCTG ATGACCTTTG TCTTTTAATT AGAGAATTTA ATCTGTTTAC ATTTAATAAC
 TGATATAggc agggcacggt ggctcccgcc tgtaatccca gcactttggg aggccgaggc
 gggtggatca cctgaggtca ggagttgaag accagcctag ccaacgtggt gaaaccccgt
 ctttactaag aatacaaaaa tgagccgggc gtggtggcag gtgcctgtag tctcagctac
 tcaggaggct gaggctggag aatcgcttaa actggggagg cagaggttgc agtgagctgg
 gattgcacca ctgcacttca acctgggtga cagagggaga ttccatctca aaaggaaaaa
 aaaaaaaCCT GATATATTTG GGTATAAATG TTCAATCCTA CTGTAGGTTT TTTTTTCCAT
 TTTGCCCACT TGTTTCTTGT TGCTATAGTC ATTACAACAA TACATGTTTG ACTTATTAGA
 ATCCTAGTAT TAATTAGTAC TTTTACCATT TCCCAGATGA TATAATATGG GCTTTAAAAC
 ACATGAAATC CGTTTACCC

  GeneView back to top
GeneView: no link established by analysis of contig annotation
GeneView: no link established by BLAST analysis of mRNA sequences
  Integrated Maps: back to top
NCBI MapViewer:  rs785843 maps exactly once on NCBI human chromosome 9
ChromosomeContig
accession		Contig
position		Chromosome
position		Hit
orientation		Contig
Allele		Assembly
Type		Group
label		Contig
label		Neighbor
SNP		SNP_flank
position
9NW_924062.161967177448plusCalt_assembly_1CeleraCeleraview1403
9NW_001839149.235651928216293minusGalt_assembly_8HuRefHuRefview1403
9NT_008413.17252617252617plusCref_assemblyreferencereferenceview1403

  NCBI Resource Links back to top
Submitter-Referenced
GenBank
NT_008413 AL158832 AL356244.5
dbSNP Blast Analysis
GenBank HTGS Finished:
AL158832.13 AL356244.12

  Population Diversity back to top

Sample AscertainmentGenotype Detailnew.gifAlleles
ss#PopulationIndividual
Group		Chrom.
Sample Cnt.
SourceA/A
A/C
C/C
HWPA
C
ss10528484HapMap-HCBAsian 90IG 0.600 0.378 0.022 0.371 0.789 0.211
HapMap-JPTAsian 88IG 0.364 0.523 0.114 0.479 0.625 0.375
HapMap-YRISub-Saharan African 120IG 0.267 0.533 0.200 0.584 0.533 0.467

SummaryAverage
Het.+/- std err:		Individual
Count		Founders
Count		Individual
Overlap		Genotype
Conflict
0.462+/-0.13218015000

  Validation Summary: back to top
Validation statusMarker displays
Mendelian segregation		PCR results confirmed
in multiple reactions		Homozygotes detected
in individual genotype data
byClusterbyFreqwith2hitwithHapMapFreq
DoubleHit found by:  BCM_SSAHASNP, NCBI
UNKNOWNUNKNOWNUNKNOWN

GENERAL: Contact Us | Homepage | Announcements |dbSNP Summary | Genome | FTP SERVER | Build History | Handle Request
DOCUMENTATION: FAQ | Searchable FAQ Archive | Overview | How to Submit | RefSNP Summary Info | Database Schema
SEARCH: Entrez SNP | Blast SNP | Batch Query | By Submitter |New Batches | Method | Population | Publication | Batch | Locus Info | Between Marker
HAPLOTYPE:Submission | Specifications | Sample HapSet | Sample Individual
NCBI: PubMed | Entrez | BLAST | OMIM | Taxonomy | Structure

Disclaimer     Privacy statement

Revised: May 25, 2006 1:38 PM .