D simpleB2

DTASelect v1.9
/auto/gtl/misc/Chandra/bradRibo/run1D/dbdigger/arabiU/tryptic/simpleB2
/home/51n/myMS/db/arabi/arabi_rPalRiboU_1b2.fasta
DBDigger 0.5 in SQT format.
-1 25.44723 -2 30.18154 -3 34.48887 --DB -d 0 -p 2
Jump to the summary table.

sequest.params modifications:

true	Use criteria
25.44723	Minimum +1 XCorr
30.18154	Minimum +2 XCorr
34.48887	Minimum +3 XCorr
0.0	Minimum DeltCN
1	Minimum charge state
3	Maximum charge state
0.0	Minimum ion proportion
1000	Maximum Sp rank
-1.0	Minimum Sp score
Include	Modified peptide inclusion
Any	Tryptic status requirement
true	Multiple, ambiguous IDs allowed
Ignore	Peptide validation handling
XCorr	Purge duplicate peptides by protein
false	Include only loci with unique peptide
false	Remove subset proteins
Ignore	Locus validation handling
0	Minimum modified peptides per locus
10	Minimum redundancy for low coverage loci
2	Minimum peptides per locus

Locus Key:

Validation Status

Locus

Sequence Count

Spectrum Count

Sequence Coverage

Length

MolWt

Descriptive Name

Similarity Key:

Locus

# of identical peptides

# of differing peptides

RPA3246

96.7%

10220

10.4

rpsS 30S ribosomal protein S19 3656696:3656974 reverse MW:10219

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1207.1207.3	63.8948	0.406845	1817.09	1817.18	1	245.0	63.0%	2	M.VRSVWKGPFVEASLLK.K	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1023.1023.2	63.522	0.350594	1818.57	1817.18	1	232.0	76.7%	3	M.VRSVWKGPFVEASLLK.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.934.934.2	57.1778	0.367337	1945.07	1945.36	1	83.0	75.0%	2	M.VRSVWKGPFVEASLLKK.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1105.1105.3	71.0125	0.479631	1945.49	1945.36	1	251.0	73.2%	3	M.VRSVWKGPFVEASLLKK.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.952.952.3	68.5481	0.430823	2430.08	2429.87	1	217.0	70.1%	1	M.VRSVWKGPFVEASLLKKADAAR.A	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.784.784.3	44.5706	0.327379	1524.68	1525.75	1	253.0	70.3%	3	R.ASGRHDVIKIWSR.R	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.644.644.2	50.9023	0.535487	1524.95	1525.75	1	48.0	65.2%	3	R.ASGRHDVIKIWSR.R	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.715.715.3	43.247	0.459798	1682.24	1681.94	1	230.0	64.3%	1	R.ASGRHDVIKIWSRR.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1347.1347.2	72.8352	0.584807	2071.11	2070.4	1	141.0	81.2%	2	R.STILPQFVGLTFGVYNGQK.H	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1574.1574.3	63.8012	0.544358	2073.38	2070.4	1	249.0	71.0%	1	R.STILPQFVGLTFGVYNGQK.H	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.789.789.2	77.0701	0.575414	2483.31	2484.8	1	39.0	82.8%	2	K.HVPVSVNEEMVGHKFGEFSPTR.T	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.887.887.3	53.6187	0.541485	2484.59	2484.8	1	151.0	54.3%	2	K.HVPVSVNEEMVGHKFGEFSPTR.T	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.230.230.2	32.1885	0.174339	1099.13	1098.21	1	136.0	66.7%	1	R.TFHGHAGDKK.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.254.254.2	53.0828	0.576256	1312.85	1313.46	1	80.0	77.3%	1	R.TFHGHAGDKKSK.K	2

RPA3236

92.4%

132

14610

9.6

rpsH 30S ribosomal protein S8 3652588:3652986 reverse MW:14609

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.766.766.1	38.4234	0.424965	1354.8	1355.49	1	169.0	73.7%	2	M.STHDPISDLITR.I	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1022.1022.2	57.5512	0.579805	1355.67	1355.49	1	170.0	85.7%	3	M.STHDPISDLITR.I	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.873.873.3	43.006	0.400042	1355.87	1355.49	1	214.0	57.1%	1	M.STHDPISDLITR.I	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.248.248.2	41.5538	0.15279	889.552	889.07	1	224.0	76.9%	2	R.IRNAQMR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.259.259.2	50.4358	0.388861	1106.57	1106.27	1	234.0	70.0%	1	R.SKSKVSTPGSK.M	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1369.1369.3	65.7833	0.570338	1561.76	1561.82	1	115.0	79.5%	2	R.ANVLDVLKAEGYIR.G	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1159.1159.2	67.0013	0.563128	1562.05	1561.82	1	227.0	76.0%	2	R.ANVLDVLKAEGYIR.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1109.1109.3	60.3413	0.535325	2715.65	2717.06	1	239.0	62.5%	3	R.ANVLDVLKAEGYIRGYATVEHPSGR.S	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1034.1034.2	30.9341	0.217605	2717.71	2717.06	1	66.0	50.0%	1	R.ANVLDVLKAEGYIRGYATVEHPSGR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.345.345.2	43.3697	0.36534	1173.77	1174.26	1	0.0	71.4%	2	R.GYATVEHPSGR.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1162.1162.2	37.8219	0.227104	2565.95	2565.88	1	192.0	55.6%	2	R.SELEIELKYFDGEPVIREIER.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.786.786.2	58.1641	0.481787	1147.09	1147.36	1	235.0	89.5%	1	R.VYASVKNLPR.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.931.931.2	33.252	0.178837	2528.91	2527.97	1	0.0	51.6%	1	R.VYASVKNLPRVNNGLGISVLSTPK.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.992.992.2	47.0403	0.340117	1879.75	1880.2	1	140.0	65.5%	1	K.NLPRVNNGLGISVLSTPK.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1170.1170.3	50.5942	0.480682	1880.21	1880.2	1	217.0	64.9%	2	K.NLPRVNNGLGISVLSTPK.G	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.942.942.1	42.1381	0.510303	1398.69	1399.63	1	32.0	85.7%	3	R.VNNGLGISVLSTPK.G	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.943.943.2	62.0303	0.526136	1400.25	1399.63	1	196.0	76.9%	3	R.VNNGLGISVLSTPK.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1001.1001.3	39.1427	0.194826	2366.72	2366.7	1	175.0	53.6%	1	R.VNNGLGISVLSTPKGIMADHDAR.D	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.885.885.2	36.5223	0.394726	2367.39	2366.7	1	11.0	51.6%	1	R.VNNGLGISVLSTPKGIMADHDAR.D	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.290.290.1	27.6124	0.124871	985.43	986.096	1	198.0	71.4%	1	K.GIMADHDAR.D	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.289.289.2	36.6343	0.186418	988.352	986.096	1	220.0	64.7%	1	K.GIMADHDAR.D	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1264.1264.2	61.6289	0.591169	2334.41	2335.6	1	33.0	68.8%	3	K.GIMADHDARDANVGGEVLFTVF.-	2

RPA0918

92.0%

8568

9.1

RPA0918 possible 50S ribosomal protein L31 1020328:1020555 reverse MW:8567

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.985.985.3	70.8627	0.596539	2968.07	2968.34	1	255.0	64.8%	2	-.MKTEIHPDYHTITVVMTDGTEYQTR.S	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.869.869.2	80.7482	0.711129	2969.23	2968.34	1	151.0	92.6%	2	-.MKTEIHPDYHTITVVMTDGTEYQTR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.872.872.2	42.0088	0.267777	1914.37	1917.13	1	136.0	56.7%	2	R.STWGKEGDKLNLDIDPK.S	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.868.868.3	39.0074	0.0400949	1918.43	1917.13	1	165.0	52.6%	1	R.STWGKEGDKLNLDIDPK.S	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.651.651.1	36.7098	0.432318	1652.75	1653.8	1	160.0	78.3%	1	K.SHPAWTGGTQQVLDR.G	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.700.700.2	31.2481	0.177345	1923.49	1924.09	1	72.0	58.6%	1	K.SHPAWTGGTQQVLDRGGR.V	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.541.541.1	42.8385	0.379131	1069.67	1070.28	1	197.0	92.9%	1	K.KFSGFLKKD.-	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.745.745.2	38.8945	0.485943	942.232	942.103	1	16.0	75.0%	1	K.FSGFLKKD.-	2 3

RPA3270

90.9%

186

19171

10.0

rplJ 50S ribosomal protein L10 3688040:3688600 reverse MW:19171

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1265.1265.3	69.1265	0.639002	3695.93	3693.26	1	237.0	65.6%	2	R.AAKKEAVESLNGLFQTTSVAIVAHYSGLTVAQMQK.L	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.526.526.3	42.015	0.36388	2341.58	2342.82	1	66.0	63.1%	1	K.LRQQMKQAGASVKVSKNRLAK.I	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1284.1284.3	60.4645	0.516797	3073.85	3074.59	1	171.0	66.7%	3	K.IALEGTDVAAIGPLLKGPTVIATSSDPVAAPK.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1238.1238.2	47.991	0.419754	3074.25	3074.59	1	97.0	68.8%	3	K.IALEGTDVAAIGPLLKGPTVIATSSDPVAAPK.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1224.1224.3	41.8306	0.441667	3818.39	3819.48	1	91.0	58.9%	1	K.IALEGTDVAAIGPLLKGPTVIATSSDPVAAPKVAVEFAK.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.557.557.2	56.7101	0.529918	1206.65	1206.38	1	177.0	89.5%	1	K.VAVEFAKANEK.F	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1251.1251.3	60.8298	0.490957	3095.12	3095.63	1	227.0	68.9%	1	K.VAVEFAKANEKFVILGGSMGTTVLNVDGVK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1135.1135.2	50.8504	0.427019	3096.65	3095.63	1	98.0	73.3%	1	K.VAVEFAKANEKFVILGGSMGTTVLNVDGVK.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1081.1081.2	84.4297	0.672132	2350.41	2350.74	1	180.0	90.6%	3	K.ANEKFVILGGSMGTTVLNVDGVK.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1446.1446.2	34.2867	0.243575	3174.03	3174.73	1	164.0	56.2%	1	K.FVILGGSMGTTVLNVDGVKALASLPSLDELR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1570.1570.3	38.924	0.346442	3174.95	3174.73	1	245.0	57.6%	1	K.FVILGGSMGTTVLNVDGVKALASLPSLDELR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1082.1082.2	49.4954	0.410002	1285.31	1285.48	1	144.0	77.3%	2	K.ALASLPSLDELR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.910.910.1	31.2018	0.166179	1484.91	1484.74	1	36.0	61.9%	1	K.ALASLPSLDELRAK.L	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1019.1019.2	48.2689	0.494776	1485.83	1484.74	1	136.0	68.0%	3	K.ALASLPSLDELRAK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1466.1466.3	40.8147	0.363969	2565.53	2563.06	1	75.0	54.8%	2	K.ALASLPSLDELRAKLVGLVQAPATK.I	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1465.1465.3	37.5135	0.380762	3614.63	3615.3	1	162.0	62.1%	1	K.ALASLPSLDELRAKLVGLVQAPATKIAQVTTAPAAK.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.640.640.1	48.7409	0.413546	1295.9	1296.6	1	153.0	90.0%	1	R.AKLVGLVQAPATK.I	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.876.876.2	71.0471	0.595202	1296.29	1296.6	1	244.0	79.2%	2	R.AKLVGLVQAPATK.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.744.744.1	46.716	0.425777	1096.73	1097.34	1	238.0	94.1%	4	K.LVGLVQAPATK.I	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.974.974.2	62.7271	0.515474	2148.67	2149.58	1	32.0	71.4%	3	K.LVGLVQAPATKIAQVTTAPAAK.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.969.969.3	54.539	0.462799	2150.33	2149.58	1	182.0	66.7%	1	K.LVGLVQAPATKIAQVTTAPAAK.L	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.359.359.1	38.3983	0.4459	1070.7	1071.26	1	154.0	77.8%	3	K.IAQVTTAPAAK.L	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.409.409.2	54.3686	0.520216	1070.97	1071.26	1	231.0	80.0%	3	K.IAQVTTAPAAK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.660.660.2	47.2162	0.289083	1411.09	1411.69	1	228.0	68.0%	1	K.IAQVTTAPAAKLAR.V	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.274.274.1	38.4864	0.170827	865.45	866.005	1	188.0	91.7%	1	R.VVQAYASK.S	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.354.354.2	64.1139	0.566476	1224.15	1224.36	1	111.0	85.7%	2	R.VVQAYASKSEAA.-	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.334.334.1	44.7297	0.473831	1224.62	1224.36	1	169.0	77.8%	1	R.VVQAYASKSEAA.-	1

RPA2767

90.9%

154

17173

10.2

rplM, L13 ribosomal protein L13 3139021:3139485 forward MW:17173

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.536.536.2	67.6406	0.450212	1438.85	1438.73	1	186.0	87.5%	3	-.MKTFSAKPAEVTK.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.651.651.3	38.4773	0.243065	1439.06	1438.73	1	224.0	66.7%	2	-.MKTFSAKPAEVTK.K	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.355.355.2	57.7787	0.487294	1566.75	1566.91	1	152.0	75.0%	1	-.MKTFSAKPAEVTKK.W	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.406.406.3	55.9742	0.36539	1567.07	1566.91	1	215.0	68.8%	2	-.MKTFSAKPAEVTKK.W	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1074.1074.3	81.0458	0.568618	2947.07	2947.56	1	255.0	80.0%	3	-.MKTFSAKPAEVTKKWVIIDATGLVVGR.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.980.980.2	81.9073	0.630518	2948.17	2947.56	1	201.0	82.8%	2	-.MKTFSAKPAEVTKKWVIIDATGLVVGR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1444.1444.2	77.5105	0.491844	1397.97	1399.68	1	249.0	87.5%	2	K.WVIIDATGLVVGR.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.778.778.2	50.808	0.453037	874.912	875.123	1	84.0	86.7%	3	R.LATLVAMR.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.882.882.3	61.3542	0.525503	2862.95	2863.31	1	63.0	69.3%	1	R.LRGKHLPTYTPHVDCGDNVIIINASK.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.802.802.2	67.1788	0.632771	2592.43	2593.97	1	220.0	80.0%	2	R.GKHLPTYTPHVDCGDNVIIINASK.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.904.904.3	67.6642	0.595853	2593.4	2593.97	1	173.0	67.6%	1	R.GKHLPTYTPHVDCGDNVIIINASK.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.867.867.2	37.3967	0.28595	2409.61	2408.74	1	8.0	61.3%	1	K.HLPTYTPHVDCGDNVIIINASK.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.504.504.2	40.7898	0.435371	2419.53	2419.75	1	4.0	62.1%	1	R.KRDNKVYYHHTGFIGGIKER.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.575.575.3	53.9126	0.469493	2420.66	2419.75	1	182.0	67.7%	3	R.KRDNKVYYHHTGFIGGIKER.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.673.673.3	50.5522	0.441189	2135.39	2135.39	1	72.0	64.8%	1	R.DNKVYYHHTGFIGGIKER.S	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.927.927.3	34.5097	0.169578	1644.29	1643.93	1	184.0	66.7%	1	K.AILEGRFPERVVEK.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.956.956.2	37.8405	0.277192	2113.01	2113.47	1	0.0	60.7%	2	K.AILEGRFPERVVEKAIER.M	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.960.960.3	46.8797	0.317547	2113.43	2113.47	1	210.0	58.6%	2	K.AILEGRFPERVVEKAIER.M	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.731.731.2	33.8463	0.251079	997.852	997.253	1	2.0	80.0%	1	R.MIPRGPLGR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.477.477.2	37.3785	0.221017	818.512	817.988	1	168.0	84.6%	3	R.VQMGNLR.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.632.632.2	61.9171	0.49412	2687.35	2688.98	1	125.0	75.9%	1	R.VYPGAEHPHEAQQPEKLDIGAMNR.K	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.726.726.3	36.9253	0.312455	2689.94	2688.98	1	52.0	54.9%	1	R.VYPGAEHPHEAQQPEKLDIGAMNR.K	3 2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.590.590.2	60.0196	0.470478	2816.43	2817.16	1	161.0	82.1%	2	R.VYPGAEHPHEAQQPEKLDIGAMNRK.N	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.679.679.3	51.743	0.555426	2818.82	2817.16	1	44.0	62.9%	2	R.VYPGAEHPHEAQQPEKLDIGAMNRK.N	3

RPA3232

90.6%

7225

10.3

rpmD ribosomal protein L30 3650679:3650873 reverse MW:7224

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.745.745.2	38.4015	0.251248	1983.05	1983.39	1	32.0	58.6%	1	M.AKAANMIKVEQIGSPIRR.H	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.891.891.3	39.7905	0.201779	1984.94	1983.39	1	149.0	60.0%	1	M.AKAANMIKVEQIGSPIRR.H	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.454.454.2	51.547	0.491819	1417.79	1419.63	1	20.0	85.0%	3	R.HHSQRETLIGLK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.712.712.3	52.6005	0.404188	2101.37	2101.46	1	103.0	66.7%	1	R.HHSQRETLIGLKLNKIGR.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.589.589.1	43.9885	0.46654	1256.94	1257.39	1	224.0	88.2%	2	R.VAELQDTPEVR.G	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.689.689.2	65.005	0.514237	1257.13	1257.39	1	250.0	94.1%	3	R.VAELQDTPEVR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.865.865.2	62.2881	0.491328	1238.67	1238.54	1	226.0	94.1%	3	R.GMIGKVQHLVR.V	2

RPA2768

89.4%

160

17497

10.6

rpsI, S9 ribosomal protein S9 3139487:3139969 forward MW:17497

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.965.965.1	35.116	0.489862	1534.37	1535.76	1	152.0	61.9%	1	M.SETMQSLDQLAALK.T	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1080.1080.2	66.3967	0.559255	1536.03	1535.76	1	207.0	84.6%	1	M.SETMQSLDQLAALK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1145.1145.3	62.3518	0.631303	2842.76	2843.18	1	236.0	64.5%	2	M.SETMQSLDQLAALKTTVTGADAPTYTK.K	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1029.1029.2	71.2196	0.485126	2842.83	2843.18	1	244.0	72.7%	3	M.SETMQSLDQLAALKTTVTGADAPTYTK.K	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1086.1086.3	42.481	0.298861	2970.68	2971.36	1	87.0	58.0%	1	M.SETMQSLDQLAALKTTVTGADAPTYTKK.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.972.972.2	42.9142	0.434006	2972.11	2971.36	1	244.0	56.2%	1	M.SETMQSLDQLAALKTTVTGADAPTYTKK.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.949.949.3	51.0156	0.498048	3673.91	3674.17	1	235.0	63.5%	2	M.SETMQSLDQLAALKTTVTGADAPTYTKKVDKFGR.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.250.250.2	47.2049	0.327057	1407.01	1407.62	1	194.0	75.0%	1	R.AYATGKRKDAVAR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.280.280.3	40.4204	0.349192	1407.56	1407.62	1	225.0	66.7%	1	R.AYATGKRKDAVAR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.377.377.2	41.5336	0.375296	956.152	956.176	1	216.0	80.0%	2	R.VWIKPGAGK.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.615.615.1	34.645	0.369144	1626.14	1626.94	1	32.0	73.9%	1	R.VWIKPGAGKITVNSR.E	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.712.712.3	41.174	0.386773	1627.34	1626.94	1	250.0	63.3%	1	R.VWIKPGAGKITVNSR.E	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.959.959.2	39.2293	0.331933	3087.21	3088.63	1	0.0	57.1%	1	R.VWIKPGAGKITVNSREVETYFARPVLR.M	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1045.1045.2	71.5282	0.465346	1329.09	1329.67	1	221.0	90.9%	3	R.MMIQQPLVAAAR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1071.1071.2	107.263	0.718998	2150.07	2151.41	1	205.0	86.5%	3	R.AGQYDVICTVAGGGLSGQAGAVR.H	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1072.1072.3	65.5844	0.576724	2152.55	2151.41	1	216.0	65.8%	2	R.AGQYDVICTVAGGGLSGQAGAVR.H	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.871.871.2	63.1725	0.613129	2673.99	2674.01	1	162.0	70.3%	2	R.AGQYDVICTVAGGGLSGQAGAVRHGISK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.968.968.3	42.9744	0.288672	2674.37	2674.01	1	95.0	53.0%	1	R.AGQYDVICTVAGGGLSGQAGAVRHGISK.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.907.907.2	51.882	0.40166	1190.21	1190.34	1	170.0	78.9%	3	K.ALTNFEPELR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.746.746.2	50.7894	0.268649	1206.97	1206.47	1	196.0	81.0%	2	R.SVLKKGGFLTR.D	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.380.380.2	30.89	0.0514924	1055.67	1056.21	1	128.0	68.8%	1	R.RSFQFSKR.-	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.333.333.3	41.9879	0.18255	1057.7	1056.21	1	116.0	84.0%	2	R.RSFQFSKR.-	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.461.461.2	36.9446	0.0685837	900.292	900.025	1	165.0	90.0%	3	R.SFQFSKR.-	2

RPA0493

89.1%

101

10979

10.8

rpmB, L28 50S ribosomal protein L28 546167:546472 forward MW:10978

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.562.562.3	47.0735	0.382436	2507.39	2507.88	1	64.0	62.5%	1	M.SRRCELTAKGAQVGHKVSHSNIK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.502.502.3	37.2915	0.215459	2738.63	2737.16	1	41.0	54.8%	1	M.SRRCELTAKGAQVGHKVSHSNIKTK.R	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.254.254.3	39.6399	0.218822	1462.25	1462.65	1	114.0	63.6%	1	K.GAQVGHKVSHSNIK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.252.252.2	59.3412	0.622037	1690.45	1691.93	1	4.0	75.0%	1	K.GAQVGHKVSHSNIKTK.R	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.249.249.1	54.5263	0.597215	1690.61	1691.93	1	166.0	87.0%	1	K.GAQVGHKVSHSNIKTK.R	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.253.253.3	45.1519	0.350134	1691.81	1691.93	1	86.0	64.6%	2	K.GAQVGHKVSHSNIKTK.R	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1244.1244.3	56.7394	0.576652	2219.03	2219.6	1	244.0	61.5%	2	K.RRFLPNLVNVTFLSDTLGR.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1384.1384.2	82.1889	0.638134	2064.55	2063.41	1	28.0	90.3%	3	R.RFLPNLVNVTFLSDTLGR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1549.1549.3	60.1751	0.389419	2064.59	2063.41	1	203.0	64.4%	1	R.RFLPNLVNVTFLSDTLGR.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1489.1489.2	70.8513	0.644282	1906.59	1907.22	1	99.0	85.7%	5	R.FLPNLVNVTFLSDTLGR.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1425.1425.3	70.2352	0.603842	1908.41	1907.22	1	167.0	77.8%	3	R.FLPNLVNVTFLSDTLGR.A	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.706.706.2	44.5737	0.292747	1002.45	1002.2	1	198.0	76.5%	1	R.LRVSTNALK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.296.296.1	31.4193	0.210256	732.53	732.856	1	144.0	90.9%	2	R.VSTNALK.S	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.910.910.3	40.8817	0.304009	2258.21	2258.58	1	200.0	57.6%	1	R.VSTNALKSVDHRGGLDAYLLK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.812.812.2	43.29	0.43495	2258.37	2258.58	1	146.0	62.5%	1	R.VSTNALKSVDHRGGLDAYLLK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.800.800.2	40.741	0.382804	1544.13	1544.75	1	40.0	60.0%	2	K.SVDHRGGLDAYLLK.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.954.954.3	48.58	0.414193	1545.02	1544.75	1	244.0	70.5%	1	K.SVDHRGGLDAYLLK.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.651.651.2	54.914	0.421843	1470.39	1470.71	1	84.0	82.6%	2	R.EAELSPKAVELKR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.790.790.3	42.5312	0.370678	1471.28	1470.71	1	78.0	70.5%	2	R.EAELSPKAVELKR.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.480.480.1	28.0852	0.301846	903.24	904.031	1	221.0	66.7%	3	K.MAGEPVAAAS.-	1

RPA3240

88.5%

122

13489

10.9

rplN 50S ribosomal protein L14 3654215:3654583 reverse MW:13489

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.895.895.2	86.1377	0.637823	1864.47	1865.1	1	254.0	92.3%	2	-.MIQMQTNLDVADNSGAR.R	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.817.817.2	41.4248	0.0916118	2020.37	2021.29	1	200.0	51.6%	3	-.MIQMQTNLDVADNSGARR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.818.818.3	37.5028	0.230001	2020.94	2021.29	1	227.0	44.1%	1	-.MIQMQTNLDVADNSGARR.V	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.416.416.1	32.4843	0.0571476	593.47	593.831	1	221.0	100.0%	1	R.VMCIK.V	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.867.867.2	40.8222	0.464838	1136.25	1135.48	1	176.0	65.0%	1	R.VMCIKVIGGSK.R	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1450.1450.3	72.6245	0.529879	2088.26	2087.47	1	253.0	67.7%	1	R.RYATVGDVIVVSIKEAIPR.G	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1327.1327.2	73.7052	0.572017	1931.29	1931.28	1	240.0	78.1%	4	R.YATVGDVIVVSIKEAIPR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1550.1550.3	38.5276	0.21516	1933.1	1931.28	1	192.0	60.7%	1	R.YATVGDVIVVSIKEAIPR.G	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1085.1085.3	36.171	0.216657	3003.98	3002.64	1	36.0	55.8%	1	R.YATVGDVIVVSIKEAIPRGKVKKGDVMK.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.449.449.2	81.5715	0.523502	1614.61	1615.04	1	209.0	95.8%	3	R.GKVKKGDVMKAVVVR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.527.527.3	63.712	0.368555	1615.58	1615.04	1	247.0	77.8%	3	R.GKVKKGDVMKAVVVR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.543.543.3	35.1385	0.317589	1202.57	1202.51	1	102.0	61.5%	1	K.KGDVMKAVVVR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.329.329.2	33.9056	0.183226	801.632	799.008	1	0.0	76.9%	1	K.AVVVRVR.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.702.702.3	43.903	0.336387	1292.69	1292.44	1	247.0	63.2%	1	R.RADGSVIRFDR.N	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.834.834.2	34.4749	0.392314	2971.45	2971.31	1	128.0	51.7%	1	R.RADGSVIRFDRNAAVLINNQSEPIGTR.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.681.681.1	45.9479	0.481471	1697.34	1697.89	1	20.0	78.3%	2	R.NAAVLINNQSEPIGTR.I	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.781.781.2	77.1631	0.62814	1698.39	1697.89	1	230.0	82.8%	3	R.NAAVLINNQSEPIGTR.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.979.979.2	42.105	0.268467	2464.29	2464.83	1	8.0	59.4%	1	R.NAAVLINNQSEPIGTRIFGPVPR.E	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.822.822.2	35.7538	0.164198	786.012	785.965	1	202.0	76.9%	2	R.IFGPVPR.E	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1379.1379.2	41.8283	0.473565	955.172	955.183	1	236.0	81.2%	2	K.IISLAPEVL.-	2

RPA3250

88.0%

241

25608

10.1

rplC 50S ribosomal protein L3 3658754:3659479 reverse MW:25608

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.594.594.2	65.2328	0.509926	1534.47	1534.89	1	49.0	83.3%	3	-.MRSGVIAQKVGMTR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.614.614.3	40.9575	0.269904	1536.38	1534.89	1	254.0	54.9%	3	-.MRSGVIAQKVGMTR.V	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.924.924.2	63.5174	0.484951	1640.71	1640.92	1	236.0	80.0%	2	R.VFTEAGEHIPVTVLK.L	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.819.819.1	42.7648	0.414032	1640.84	1640.92	1	153.0	78.3%	1	R.VFTEAGEHIPVTVLK.L	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1084.1084.3	34.8873	0.290206	1641.32	1640.92	1	57.0	56.0%	1	R.VFTEAGEHIPVTVLK.L	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1101.1101.3	69.4068	0.586061	2719.1	2719.18	1	248.0	70.8%	1	R.VFTEAGEHIPVTVLKLGNCQVLGHR.T	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.987.987.2	54.1821	0.464306	2719.33	2719.18	1	211.0	63.3%	1	R.VFTEAGEHIPVTVLKLGNCQVLGHR.T	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.572.572.2	52.3732	0.455718	1097.25	1097.29	1	225.0	83.3%	2	K.LGNCQVLGHR.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.337.337.2	45.1107	0.334344	1583.97	1583.86	1	148.0	64.0%	1	K.LGNCQVLGHRTKEK.N	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.435.435.2	71.6757	0.561853	1922.31	1923.18	1	124.0	82.8%	2	R.TKEKNGYVALQVGSGSRK.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.505.505.3	40.3994	0.362416	1923.11	1923.18	1	168.0	55.7%	1	R.TKEKNGYVALQVGSGSRK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.321.321.1	39.0326	0.232852	866.67	867.1	1	208.0	100.0%	1	R.KTVYMPK.A	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.430.430.1	34.7087	0.318462	738.4	738.925	1	248.0	100.0%	2	K.TVYMPK.A	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.514.514.2	36.164	0.227563	1098.11	1095.31	1	8.0	70.6%	3	K.TVYMPKAER.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.424.424.1	45.5049	0.337414	1145.69	1146.33	1	176.0	77.8%	3	R.GQFAAAKVEPK.R	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.418.418.2	63.812	0.567141	1147.05	1146.33	1	236.0	85.0%	2	R.GQFAAAKVEPK.R	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1315.1315.3	41.5423	0.407079	4194.77	4193.73	1	128.0	56.4%	2	R.VSEDALLPVGAEIQADHFVVGQFVDVTGTSTGKGFAGGMKR.W	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1096.1096.2	35.5339	0.153169	849.892	849.968	1	98.0	71.4%	1	R.WNFGGLR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.794.794.2	46.0672	0.491306	1881.37	1882.1	1	27.0	53.3%	2	R.WNFGGLRATHGVSVSHR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.950.950.3	52.7838	0.470336	1882.13	1882.1	1	207.0	62.5%	3	R.WNFGGLRATHGVSVSHR.S	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.246.246.1	32.0763	0.288341	1050.55	1051.15	1	161.0	70.6%	1	R.ATHGVSVSHR.S	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.274.274.2	53.1258	0.498076	1051.29	1051.15	1	98.0	78.9%	1	R.ATHGVSVSHR.S	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.788.788.2	34.8789	0.290929	1925.99	1926.32	1	25.0	56.7%	1	K.KMPGHMGVDRVTTLNLR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.764.764.2	33.7172	0.19512	817.352	816.977	1	67.0	76.9%	1	R.VTTLNLR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.329.329.2	47.6319	0.33913	946.672	946.049	1	42.0	86.7%	3	R.VVQTDVER.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1211.1211.2	63.4706	0.531531	2180.95	2181.54	1	90.0	72.7%	2	R.VVQTDVERGLILVEGAVPGTK.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.957.957.1	46.3438	0.457371	1253.71	1254.51	1	192.0	90.0%	3	R.GLILVEGAVPGTK.G	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1134.1134.2	52.017	0.533789	1254.49	1254.51	1	222.0	73.9%	2	R.GLILVEGAVPGTK.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1284.1284.3	39.0327	0.358515	1824.32	1824.18	1	241.0	52.5%	1	R.GLILVEGAVPGTKGGWIR.V	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1121.1121.2	62.8079	0.501639	1825.03	1824.18	1	188.0	75.0%	2	R.GLILVEGAVPGTKGGWIR.V	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1085.1085.2	31.5851	0.199993	2079.09	2079.5	1	8.0	56.2%	1	R.GLILVEGAVPGTKGGWIRVR.D	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1250.1250.3	37.0346	0.137382	2079.32	2079.5	1	234.0	50.7%	1	R.GLILVEGAVPGTKGGWIRVR.D	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.669.669.3	51.0387	0.475549	1497.77	1496.8	1	248.0	60.4%	3	K.KALPADAPKPGKFR.L	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.547.547.2	53.2908	0.534967	1497.93	1496.8	1	179.0	72.0%	2	K.KALPADAPKPGKFR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.736.736.2	40.1884	0.444029	1368.29	1368.62	1	98.0	65.2%	2	K.ALPADAPKPGKFR.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.833.833.3	37.1587	0.287515	3005.6	3006.3	1	184.0	46.9%	1	K.ALPADAPKPGKFRLANGDAAAEAPAAEQEGA.-	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.564.564.1	49.2033	0.521717	1655.56	1656.7	1	229.0	67.9%	1	R.LANGDAAAEAPAAEQEGA.-	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.655.655.2	60.4215	0.537714	1656.53	1656.7	1	240.0	73.3%	1	R.LANGDAAAEAPAAEQEGA.-	2

RPA0241

87.6%

129

14298

9.9

rplS, L19 50s ribosomal protein L19 266732:267121 reverse MW:14297

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1189.1189.2	76.2076	0.600384	2194.41	2194.56	1	218.0	86.2%	5	-.MNLIQTLEKEQFDKLSAGK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1196.1196.3	59.1315	0.481248	2195.57	2194.56	1	172.0	64.9%	2	-.MNLIQTLEKEQFDKLSAGK.T	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1234.1234.3	35.6685	0.302996	3863.21	3862.48	1	41.0	56.1%	1	-.MNLIQTLEKEQFDKLSAGKTIPEFGPGDTVIVNVK.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1060.1060.2	66.7084	0.51252	1686.41	1686.95	1	112.0	82.8%	1	K.TIPEFGPGDTVIVNVK.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.975.975.1	36.5798	0.400601	1686.56	1686.95	1	173.0	62.5%	1	K.TIPEFGPGDTVIVNVK.V	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.1132.1132.2	52.4911	0.421599	2355.39	2356.68	1	32.0	59.4%	1	K.TIPEFGPGDTVIVNVKVVEGER.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.917.917.2	64.0956	0.468354	1195.13	1195.38	1	223.0	81.0%	2	R.VQAYEGVCIGR.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.656.656.1	31.9987	0.353686	1223.88	1224.32	1	129.0	77.8%	1	R.SGGGINESFTVR.K	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.755.755.2	54.8813	0.283849	1224.15	1224.32	1	212.0	81.8%	2	R.SGGGINESFTVR.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.777.777.2	54.7826	0.477732	1351.83	1352.49	1	206.0	73.9%	2	R.SGGGINESFTVRK.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.359.359.1	40.8572	0.294279	1137.68	1138.27	1	196.0	87.5%	1	R.KISYGEGVER.V	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.384.384.2	56.6312	0.479374	1138.37	1138.27	1	186.0	84.2%	3	R.KISYGEGVER.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.553.553.2	41.8555	0.391382	1009.81	1010.09	1	230.0	76.5%	1	K.ISYGEGVER.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1449.1449.3	46.1121	0.381637	2453.18	2451.89	1	106.0	60.3%	1	K.ISYGEGVERVFPLLSPMIDSIK.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1280.1280.1	48.5824	0.323286	1459.78	1460.82	1	226.0	85.0%	2	R.VFPLLSPMIDSIK.V	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1389.1389.2	64.0007	0.547067	1460.59	1460.82	1	123.0	83.3%	4	R.VFPLLSPMIDSIK.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1328.1328.2	65.0178	0.467261	1814.83	1815.27	1	97.0	72.4%	2	R.VFPLLSPMIDSIKVVR.R	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1329.1329.3	39.3784	0.180645	1814.93	1815.27	1	94.0	52.1%	1	R.VFPLLSPMIDSIKVVR.R	3
	Prep4_Anaer_Gradient_1st_052703_PPM.771.771.2	44.188	0.229311	927.312	927.135	1	205.0	84.6%	2	R.AKLYYLR.N	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.223.223.1	40.2411	0.171335	1015.63	1016.19	1	172.0	100.0%	1	R.IVEKKQDR.T	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.222.222.2	51.0167	0.243099	1016.23	1016.19	1	234.0	86.7%	2	R.IVEKKQDR.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.314.314.2	31.4733	0.168089	1702.51	1700.93	1	0.0	54.2%	1	R.IVEKKQDRTAAVAAAE.-	2

RPA2953

87.4%

103

11220

10.7

hupA possible DNA-binding protein hu-alpha (NS2) (HU-2) 3338656:3338967 forward MW:11220

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1231.1231.3	43.0326	0.488585	3935.39	3933.52	1	79.0	44.4%	1	K.SATPATVTLKHLAAALAEEHELSKKQTEAILGDMVTR.I	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.926.926.2	92.0329	0.680587	2963.13	2963.39	1	254.0	96.4%	3	K.HLAAALAEEHELSKKQTEAILGDMVTR.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1034.1034.3	80.9534	0.665711	2963.87	2963.39	1	155.0	76.0%	2	K.HLAAALAEEHELSKKQTEAILGDMVTR.I	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.264.264.2	42.227	0.282509	1210.37	1210.47	1	216.0	63.2%	1	R.ITKHLKKGER.I	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1315.1315.3	57.4584	0.381546	1338.02	1337.7	1	231.0	81.6%	2	R.IRIVGLGILQVR.K	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1295.1295.2	66.2273	0.580703	1067.93	1068.35	1	250.0	89.5%	2	R.IVGLGILQVR.K	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.571.571.1	40.6797	0.308247	1543.13	1543.79	1	11.0	72.7%	1	R.MGRNPATGEQIQIK.A	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.796.796.3	43.2249	0.243866	1544.0	1543.79	1	71.0	62.5%	1	R.MGRNPATGEQIQIK.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.654.654.2	65.3185	0.386877	1544.65	1543.79	1	222.0	72.0%	2	R.MGRNPATGEQIQIK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.560.560.2	57.4761	0.47846	1957.77	1958.29	1	154.0	59.4%	1	R.MGRNPATGEQIQIKASKK.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.671.671.3	66.6526	0.532071	1958.0	1958.29	1	190.0	67.2%	1	R.MGRNPATGEQIQIKASKK.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.600.600.2	37.2477	0.369064	2433.65	2431.87	1	1.0	58.1%	1	R.MGRNPATGEQIQIKASKKVAFR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.444.444.1	44.4471	0.413026	972.53	973.158	1	180.0	92.3%	3	R.AAKELKEAI.-	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.534.534.2	47.9442	0.416054	973.212	973.158	1	115.0	86.7%	3	R.AAKELKEAI.-	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.497.497.1	26.6175	0.279951	702.46	702.826	1	155.0	80.0%	1	K.ELKEAI.-	1

RPA0433

86.5%

10143

10.3

rpsO ribosomal protein S15 478426:478695 reverse MW:10142

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.520.520.3	45.7677	0.419571	1834.25	1834.12	1	165.0	60.7%	3	M.SITAERKAEVIKTSATK.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.519.519.2	57.718	0.6075	1835.05	1834.12	1	98.0	66.7%	2	M.SITAERKAEVIKTSATK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.255.255.2	57.2779	0.454528	1176.33	1176.4	1	103.0	80.0%	2	R.KAEVIKTSATK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.838.838.3	85.0883	0.671243	2886.71	2887.26	1	191.0	76.5%	2	R.KAEVIKTSATKAGDTGSPEVQVAILSER.I	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.744.744.2	88.5945	0.64952	2887.51	2887.26	1	147.0	90.9%	3	R.KAEVIKTSATKAGDTGSPEVQVAILSER.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.796.796.2	71.7918	0.594117	2758.89	2759.09	1	197.0	82.4%	1	K.AEVIKTSATKAGDTGSPEVQVAILSER.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.785.785.2	83.696	0.605817	2217.61	2218.43	1	204.0	87.5%	1	K.TSATKAGDTGSPEVQVAILSER.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.966.966.2	65.0992	0.464531	1729.35	1729.89	1	156.0	67.7%	2	K.AGDTGSPEVQVAILSER.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.665.665.1	35.9016	0.224135	1044.64	1045.23	1	208.0	73.3%	2	R.ITNLTAHFK.T	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.801.801.2	54.3923	0.464711	1045.05	1045.23	1	202.0	82.4%	3	R.ITNLTAHFK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.386.386.2	72.4185	0.600541	2122.17	2122.35	1	172.0	79.3%	3	R.ITNLTAHFKTHTKDNHSR.R	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.384.384.3	54.3394	0.38577	2123.45	2122.35	1	243.0	63.8%	3	R.ITNLTAHFKTHTKDNHSR.R	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.782.782.2	68.7666	0.551756	1579.61	1579.84	1	230.0	82.6%	1	R.SLLDYIKKKDEAR.Y	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.936.936.3	48.7403	0.454718	1580.42	1579.84	1	224.0	71.8%	1	R.SLLDYIKKKDEAR.Y	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.410.410.3	36.9817	0.237937	1542.41	1541.84	1	214.0	56.1%	2	R.YKALLEKHNIRR.-	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.360.360.2	34.342	0.34954	1542.67	1541.84	1	80.0	54.5%	3	R.YKALLEKHNIRR.-	2

RPA3254

85.3%

156

17688

10.3

rpsG 30S ribosomal protein S7 3663258:3663728 reverse MW:17688

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.750.750.2	46.1144	0.391158	2362.75	2363.77	1	193.0	64.3%	1	R.HAAEKREVLPDPKFGNIIVTK.F	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.481.481.1	34.7995	0.144436	797.57	797.927	1	245.0	83.3%	3	R.EVLPDPK.F	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.1004.1004.2	43.3862	0.413304	1671.93	1670.99	1	136.0	66.7%	1	R.EVLPDPKFGNIIVTK.F	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.737.737.1	35.0413	0.145528	891.73	892.086	1	68.0	92.3%	3	K.FGNIIVTK.F	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.875.875.2	55.7022	0.371678	891.972	892.086	1	249.0	81.2%	3	K.FGNIIVTK.F	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.584.584.1	32.2811	0.287977	1276.2	1276.56	1	48.0	82.4%	2	K.FMNSVMYAGKK.S	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.815.815.2	51.6314	0.553117	1276.41	1276.56	1	216.0	80.0%	2	K.FMNSVMYAGKK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1494.1494.3	45.9294	0.43104	3070.01	3070.6	1	227.0	56.8%	2	K.FMNSVMYAGKKSVAESIVYGAFDLIEAK.T	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1381.1381.2	56.9727	0.538684	3070.23	3070.6	1	37.0	63.3%	3	K.FMNSVMYAGKKSVAESIVYGAFDLIEAK.T	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1410.1410.3	71.8511	0.526974	1941.26	1941.23	1	255.0	65.0%	2	K.KSVAESIVYGAFDLIEAK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1480.1480.2	102.126	0.720542	1941.73	1941.23	1	226.0	96.7%	3	K.KSVAESIVYGAFDLIEAK.T	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1483.1483.1	56.4469	0.58253	1812.81	1813.06	1	172.0	87.5%	1	K.SVAESIVYGAFDLIEAK.T	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1724.1724.3	78.9457	0.561725	1812.98	1813.06	1	187.0	74.1%	13	K.SVAESIVYGAFDLIEAK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1559.1559.2	68.1329	0.528717	1813.07	1813.06	1	204.0	77.8%	10	K.SVAESIVYGAFDLIEAK.T	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1744.1744.3	36.8027	0.391191	4379.42	4378.05	1	109.0	53.6%	2	K.SVAESIVYGAFDLIEAKTKQPPLGVFEQALDNVMPTIEVR.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1462.1462.2	70.4867	0.675448	2583.07	2584.01	1	42.0	83.3%	8	K.TKQPPLGVFEQALDNVMPTIEVR.S	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1445.1445.3	46.1916	0.271844	2584.64	2584.01	1	198.0	60.3%	4	K.TKQPPLGVFEQALDNVMPTIEVR.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1559.1559.2	57.3579	0.530101	2353.83	2354.73	1	37.0	66.7%	3	K.QPPLGVFEQALDNVMPTIEVR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1641.1641.3	40.8592	0.252905	2355.11	2354.73	1	178.0	62.5%	1	K.QPPLGVFEQALDNVMPTIEVR.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.699.699.2	30.8943	0.155485	1774.81	1775.02	1	0.0	55.6%	1	R.SRRVGGATYQVPVEVR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.831.831.3	40.7015	0.108318	1776.02	1775.02	1	172.0	62.5%	1	R.SRRVGGATYQVPVEVR.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.742.742.3	48.86	0.380293	1530.95	1531.76	1	207.0	62.5%	2	R.RVGGATYQVPVEVR.S	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.739.739.2	57.3709	0.458581	1531.05	1531.76	1	148.0	76.9%	1	R.RVGGATYQVPVEVR.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.709.709.1	43.9208	0.345021	1374.74	1375.57	1	70.0	80.0%	1	R.VGGATYQVPVEVR.S	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.807.807.2	65.1152	0.555194	1375.39	1375.57	1	184.0	95.2%	3	R.VGGATYQVPVEVR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.365.365.2	43.4906	0.114685	814.052	813.979	1	115.0	78.6%	3	R.RQALGIR.W	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.809.809.2	43.175	0.26929	831.132	831.006	1	192.0	100.0%	3	R.WLITAAR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.886.886.3	47.2944	0.297232	1773.02	1772.96	1	245.0	55.4%	3	R.LSAELLDASNNRGNAVK.K	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.748.748.2	65.0069	0.513053	1773.95	1772.96	1	179.0	78.6%	1	R.LSAELLDASNNRGNAVK.K	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.531.531.2	30.4017	0.180362	2666.29	2665.97	1	32.0	55.2%	1	R.LSAELLDASNNRGNAVKKREDVHK.M	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.857.857.2	41.2394	0.491241	967.252	967.074	1	97.0	92.3%	1	R.AFSHYRW.-	2

RPA1589

83.4%

205

23559

10.1

rpsD 30S ribosomal protein S4 1768213:1768830 reverse MW:23559

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.765.765.2	42.6008	0.356536	1186.87	1187.41	1	193.0	72.2%	2	R.MGQNIWGRPK.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1061.1061.2	51.2613	0.244929	1035.23	1035.19	1	120.0	82.4%	3	K.LSDFGVQLR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.577.577.2	74.8227	0.546132	1771.75	1770.04	1	162.0	95.8%	2	R.AKQKLKGYYANISER.Q	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.636.636.1	29.4616	0.23071	1334.99	1335.51	1	34.0	75.0%	1	R.QFHAIYVEATR.L	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.872.872.2	47.1654	0.418597	1335.17	1335.51	1	25.0	77.8%	1	R.QFHAIYVEATR.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1073.1073.2	80.2985	0.591215	1613.97	1614.84	1	222.0	85.7%	2	R.LKGDSGENLIGLLER.R	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1270.1270.3	41.7777	0.278409	1614.95	1614.84	1	158.0	62.5%	1	R.LKGDSGENLIGLLER.R	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.989.989.1	42.9364	0.451526	1615.02	1614.84	1	140.0	69.6%	2	R.LKGDSGENLIGLLER.R	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.571.571.1	29.4702	0.316313	991.76	992.167	1	106.0	84.6%	1	R.RLDAVVYR.A	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.694.694.2	56.22	0.412328	992.932	992.167	1	231.0	87.5%	3	R.RLDAVVYR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.555.555.2	47.1031	0.401729	1191.41	1191.42	1	48.0	83.3%	2	R.RLDAVVYRAK.F	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.961.961.2	59.7175	0.494425	1229.25	1229.49	1	225.0	85.0%	3	R.AKFVSTMFAAR.Q	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.994.994.2	50.5806	0.577202	1030.35	1030.24	1	232.0	88.2%	1	K.FVSTMFAAR.Q	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.402.402.2	39.9539	0.389582	1492.13	1492.72	1	0.0	73.9%	2	R.QFINHGHIKVNGK.R	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.782.782.3	41.9091	0.400366	1232.81	1232.47	1	211.0	72.7%	1	K.RVNIPSYKVR.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1240.1240.2	82.0071	0.639198	2831.69	2831.24	1	236.0	89.7%	1	R.VGDVIEVKEASKQLAFVLEASQLAER.D	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1332.1332.3	42.3579	0.415141	4258.34	4256.76	1	139.0	61.0%	1	R.VGDVIEVKEASKQLAFVLEASQLAERDVPDYIEVDHNK.M	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1300.1300.3	45.5525	0.383309	4687.58	4688.31	1	104.0	61.7%	1	R.VGDVIEVKEASKQLAFVLEASQLAERDVPDYIEVDHNKMTAK.F	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.762.762.2	46.2109	0.253003	1875.79	1876.1	1	20.0	69.2%	1	R.DVPDYIEVDHNKMTAK.F	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1372.1372.2	40.9446	0.30194	3134.43	3134.67	1	164.0	64.3%	1	K.FARIPALSDVPFAVQMEPHLIVEFYSR.-	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1482.1482.3	74.175	0.57337	3135.92	3134.67	1	182.0	78.4%	2	K.FARIPALSDVPFAVQMEPHLIVEFYSR.-	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1427.1427.3	64.1604	0.606511	2759.99	2760.23	1	154.0	72.5%	3	R.IPALSDVPFAVQMEPHLIVEFYSR.-	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1380.1380.2	77.9125	0.621312	2760.63	2760.23	1	178.0	86.2%	3	R.IPALSDVPFAVQMEPHLIVEFYSR.-	2

RPA3231

83.2%

161

16837

10.4

rplO 50S ribosomal protein L15 3650181:3650666 reverse MW:16837

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.699.699.1	45.8773	0.499463	1419.79	1420.63	1	164.0	85.0%	2	-.MKLSEIADNVGSR.K	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.799.799.2	82.4998	0.541059	1420.77	1420.63	1	249.0	95.5%	2	-.MKLSEIADNVGSR.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.951.951.3	55.864	0.31327	1421.03	1420.63	1	203.0	74.4%	1	-.MKLSEIADNVGSR.K	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.757.757.3	50.886	0.386324	1833.8	1833.17	1	221.0	62.3%	1	-.MKLSEIADNVGSRKKR.M	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.619.619.2	39.5146	0.370137	1162.37	1161.26	1	24.0	61.9%	1	K.LSEIADNVGSR.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.245.245.2	36.7322	0.33441	1145.91	1146.25	1	1.0	70.0%	1	K.TGGRGGKGQTAR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.846.846.3	57.2592	0.462233	1472.39	1470.74	1	203.0	61.4%	3	R.IKGFEGGQMPLHR.R	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.699.699.2	65.072	0.578559	1472.53	1470.74	1	230.0	83.3%	2	R.IKGFEGGQMPLHR.R	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1431.1431.2	39.6484	0.416753	2996.53	2997.34	1	8.0	67.9%	1	K.RGFNNIFALEFAEVNLDRLQEAVDSK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1539.1539.3	63.5026	0.555073	2998.43	2997.34	1	185.0	69.9%	3	K.RGFNNIFALEFAEVNLDRLQEAVDSK.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1228.1228.3	51.593	0.380381	1939.04	1939.26	1	127.0	60.7%	3	K.AIDAGKVVDAAALVEAGVLR.R	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1271.1271.2	99.9996	0.599468	1940.13	1939.26	1	241.0	88.6%	3	K.AIDAGKVVDAAALVEAGVLR.R	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1178.1178.2	37.5931	0.156712	2095.91	2095.45	1	88.0	50.0%	2	K.AIDAGKVVDAAALVEAGVLRR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1230.1230.3	71.291	0.521446	2096.39	2095.45	1	173.0	73.0%	5	K.AIDAGKVVDAAALVEAGVLRR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.594.594.2	42.4363	0.255762	1058.55	1058.27	1	172.0	66.7%	1	R.LLGRGELTAK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.566.566.1	39.2179	0.296038	1081.66	1082.25	1	184.0	86.7%	1	K.LNIEVHGATK.S	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.580.580.2	43.2926	0.381363	1083.19	1082.25	1	241.0	77.8%	1	K.LNIEVHGATK.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1025.1025.3	36.8086	0.336796	3534.2	3532.03	1	196.0	54.3%	1	K.LNIEVHGATKSAIAAVEKAGGSVKILAPKAEEGEAA.-	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.342.342.1	40.8411	0.312727	788.46	788.92	1	88.0	92.3%	1	K.SAIAAVEK.A	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.714.714.3	36.8909	0.264325	1288.64	1288.49	1	184.0	52.0%	1	K.SAIAAVEKAGGSVK.I	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.850.850.2	55.6279	0.511948	1289.59	1288.49	1	248.0	73.9%	2	K.SAIAAVEKAGGSVK.I	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.865.865.2	60.7037	0.450758	2469.09	2468.81	1	14.0	69.7%	1	K.SAIAAVEKAGGSVKILAPKAEEGEAA.-	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.682.682.2	54.9677	0.419124	1698.39	1698.91	1	216.0	58.1%	1	K.AGGSVKILAPKAEEGEAA.-	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.509.509.1	38.3408	0.479395	1198.61	1199.35	1	170.0	82.4%	1	K.ILAPKAEEGEAA.-	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.592.592.2	53.5467	0.46888	1199.43	1199.35	1	216.0	85.7%	3	K.ILAPKAEEGEAA.-	2

RPA3241

82.9%

9685

10.5

rpsQ 30S ribosomal protein S17 3654647:3654895 reverse MW:9685

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.485.485.2	46.739	0.400807	1427.71	1427.69	1	168.0	66.7%	3	M.PKRTLQGVVVSDK.Q	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.373.373.2	50.1488	0.466605	1755.77	1755.07	1	132.0	67.9%	3	M.PKRTLQGVVVSDKQAK.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.434.434.3	62.9136	0.445994	1755.89	1755.07	1	252.0	75.9%	2	M.PKRTLQGVVVSDKQAK.T	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.685.685.2	60.1402	0.563384	1372.99	1373.59	1	240.0	83.3%	2	R.TLQGVVVSDKQAK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.309.309.1	39.8675	0.0915533	1033.77	1034.25	1	210.0	100.0%	1	R.FTHPIYKK.T	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.349.349.2	39.3668	0.156883	1034.27	1034.25	1	138.0	73.3%	2	R.FTHPIYKK.T	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.759.759.3	68.1241	0.618733	3430.28	3430.78	1	27.0	72.7%	3	R.SKNYHAHDENNQFKPGDMVWIEESKPISK.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.767.767.3	63.7058	0.585907	3828.77	3828.3	1	231.0	67.5%	2	R.SKNYHAHDENNQFKPGDMVWIEESKPISKLKR.W	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.807.807.2	33.2609	0.387058	3214.19	3215.53	1	76.0	51.9%	1	K.NYHAHDENNQFKPGDMVWIEESKPISK.L	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.800.800.3	46.9374	0.482705	3612.98	3613.05	1	116.0	63.6%	1	K.NYHAHDENNQFKPGDMVWIEESKPISKLKR.W	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.549.549.2	42.9809	0.455958	1372.29	1372.61	1	198.0	66.7%	6	R.WTVVRGEPKKTA.-	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.424.424.1	26.137	0.279447	1372.6	1372.61	1	98.0	55.6%	1	R.WTVVRGEPKKTA.-	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.541.541.3	40.365	0.375077	1373.06	1372.61	1	198.0	64.3%	1	R.WTVVRGEPKKTA.-	3

RPA3249

82.5%

206

22247

10.3

rplD 50S ribosomal protein L4 3658132:3658752 reverse MW:22247

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1139.1139.2	76.6029	0.68432	3077.25	3078.51	1	208.0	83.9%	3	-.MELKVTTLEGKEAGSVQLSDEIFGLEPR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1254.1254.3	70.6925	0.59899	3078.35	3078.51	1	181.0	68.4%	3	-.MELKVTTLEGKEAGSVQLSDEIFGLEPR.S	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1086.1086.2	67.7063	0.603282	2577.09	2576.86	1	195.0	77.4%	1	K.VTTLEGKEAGSVQLSDEIFGLEPR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1227.1227.2	57.0563	0.576336	1848.35	1848.02	1	244.0	66.7%	1	K.EAGSVQLSDEIFGLEPR.S	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.312.312.2	41.1365	0.0998773	731.632	731.828	1	250.0	100.0%	1	R.SDIIQR.C	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.335.335.2	43.519	0.24172	875.752	873.991	1	252.0	76.9%	1	K.GRAEVWR.T	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.234.234.2	33.5629	0.116081	1197.37	1197.4	1	228.0	61.9%	1	K.MYKQKGTGGAR.H	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.394.394.2	38.8863	0.420135	1212.23	1212.36	1	172.0	66.7%	2	R.HGSQRVPQFR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.395.395.3	44.3281	0.30967	1214.36	1212.36	1	226.0	75.8%	2	R.HGSQRVPQFR.G	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.634.634.2	48.8126	0.317623	1073.13	1073.24	1	236.0	70.0%	3	R.GGGRAFGPVVR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.640.640.3	38.6311	0.275524	1073.84	1073.24	1	191.0	67.6%	1	R.GGGRAFGPVVR.S	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.727.727.2	38.8772	0.427677	746.012	745.9	1	195.0	83.3%	3	R.AFGPVVR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.495.495.1	40.1381	0.325155	880.66	881.02	1	168.0	91.7%	2	R.SHAIDLPK.K	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.601.601.2	47.9782	0.412056	881.232	881.02	1	241.0	80.0%	3	R.SHAIDLPK.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.395.395.2	61.6655	0.604406	1264.49	1264.51	1	251.0	94.1%	3	R.SHAIDLPKKVR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.392.392.3	47.3846	0.475627	1265.42	1264.51	1	252.0	65.8%	3	R.SHAIDLPKKVR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.232.232.1	35.2464	0.324101	626.39	626.734	1	225.0	90.0%	1	R.HALSAK.A	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.839.839.2	79.1847	0.619099	2012.65	2013.39	1	234.0	83.9%	3	K.AKGGGLIVLDKAELEAAKTK.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.995.995.3	84.4015	0.674629	2012.87	2013.39	1	175.0	79.4%	3	K.AKGGGLIVLDKAELEAAKTK.T	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.898.898.2	79.8438	0.587195	1813.53	1814.13	1	236.0	88.9%	3	K.GGGLIVLDKAELEAAKTK.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1066.1066.3	62.3703	0.437724	1815.05	1814.13	1	204.0	65.1%	3	K.GGGLIVLDKAELEAAKTK.T	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1249.1249.3	58.8421	0.564742	3302.0	3301.73	1	165.0	59.8%	2	K.TKTLVGHFSGLGLESALIIDGAEVNNGFAAAAR.N	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1250.1250.2	63.7305	0.586719	3302.03	3301.73	1	153.0	83.3%	1	K.TKTLVGHFSGLGLESALIIDGAEVNNGFAAAAR.N	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1444.1444.3	63.4319	0.527373	3071.66	3072.45	1	95.0	65.5%	15	K.TLVGHFSGLGLESALIIDGAEVNNGFAAAAR.N	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1326.1326.2	102.426	0.654435	3072.83	3072.45	1	145.0	90.6%	3	K.TLVGHFSGLGLESALIIDGAEVNNGFAAAAR.N	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1424.1424.2	78.571	0.563441	2266.07	2266.65	1	134.0	93.5%	5	R.NIPNIDVLPVQGINVYDILR.R	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1540.1540.3	74.818	0.567719	2268.56	2266.65	1	240.0	75.0%	3	R.NIPNIDVLPVQGINVYDILR.R	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.690.690.2	56.4376	0.42561	916.212	916.023	1	251.0	88.2%	1	K.AAVDALEAR.F	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.567.567.1	29.9944	0.225529	916.53	916.023	1	194.0	76.9%	1	K.AAVDALEAR.F	1

RPA3233

82.2%

191

20655

11.0

rpsE ribosomal protein S5 3650932:3651507 reverse MW:20654

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.810.810.3	43.9775	0.349367	2514.95	2515.75	1	168.0	59.7%	2	R.SREREERDSEFVDKLVHINR.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.711.711.2	41.7311	0.428649	2515.83	2515.75	1	164.0	60.7%	2	R.SREREERDSEFVDKLVHINR.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.706.706.2	35.2869	0.294733	2813.21	2814.14	1	145.0	53.8%	1	R.SREREERDSEFVDKLVHINRVAK.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1112.1112.3	46.6289	0.513911	1573.94	1572.76	1	111.0	63.6%	1	R.DSEFVDKLVHINR.V	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1392.1392.2	39.8255	0.443575	1352.29	1351.59	1	116.0	58.3%	1	R.FGFAALVVVGDQK.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1084.1084.2	58.8677	0.432072	1565.03	1564.83	1	242.0	70.4%	2	R.FGFAALVVVGDQKGR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1252.1252.3	53.9769	0.495881	1565.06	1564.83	1	230.0	70.0%	2	R.FGFAALVVVGDQKGR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.264.264.1	31.6669	0.236417	701.49	701.803	1	180.0	81.8%	2	R.VGFGHGK.A	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.622.622.2	38.9106	0.326579	1685.39	1685.92	1	17.0	58.3%	3	R.EVPEAIRKATESAKR.N	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.299.299.2	38.112	0.0195712	801.052	800.937	1	193.0	84.6%	1	R.VALREGR.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.271.271.1	49.8933	0.307713	1020.67	1020.14	1	25.0	100.0%	1	R.TLHHDIAGR.H	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.306.306.2	42.4958	0.315302	1021.15	1020.14	1	106.0	76.5%	2	R.TLHHDIAGR.H	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.260.260.2	46.9835	0.479492	1500.05	1498.65	1	194.0	73.1%	1	R.TLHHDIAGRHGAGR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.779.779.2	67.0182	0.590104	1340.49	1340.59	1	46.0	84.0%	3	R.AAPAGTGIIAGGPMR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1616.1616.3	53.8158	0.541055	2754.47	2755.25	1	227.0	56.4%	3	R.AAPAGTGIIAGGPMRAVFETLGIADVVAK.S	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1514.1514.2	41.3867	0.331991	2754.83	2755.25	1	90.0	60.6%	1	R.AAPAGTGIIAGGPMRAVFETLGIADVVAK.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1659.1659.3	52.6649	0.523601	4047.44	4047.69	1	219.0	59.8%	2	R.AAPAGTGIIAGGPMRAVFETLGIADVVAKSVGSSNPYNMVR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1127.1127.1	49.8741	0.515175	1432.62	1433.69	1	113.0	81.8%	5	R.AVFETLGIADVVAK.S	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1165.1165.2	76.2507	0.556488	1433.95	1433.69	1	183.0	91.3%	3	R.AVFETLGIADVVAK.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1279.1279.2	75.3373	0.646351	2725.21	2726.13	1	167.0	81.8%	2	R.AVFETLGIADVVAKSVGSSNPYNMVR.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.730.730.1	34.0776	0.298017	1310.65	1311.46	1	66.0	72.2%	3	K.SVGSSNPYNMVR.A	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.864.864.2	67.9728	0.509005	1310.99	1311.46	1	169.0	100.0%	3	K.SVGSSNPYNMVR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.691.691.1	38.5345	0.399076	1470.95	1471.66	1	208.0	80.0%	1	R.ATFDALKHLDSPR.S	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.786.786.2	63.4844	0.563573	1471.49	1471.66	1	241.0	78.3%	2	R.ATFDALKHLDSPR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.442.442.2	61.0478	0.473517	1286.73	1286.52	1	41.0	80.0%	1	R.RNIKVSTLQAR.R	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.578.578.2	44.7252	0.2919	1130.61	1130.33	1	209.0	73.7%	3	R.NIKVSTLQAR.R	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.480.480.1	34.8176	0.308628	1101.61	1102.19	1	180.0	66.7%	3	R.RVGGDAEVVAE.-	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.570.570.2	39.0047	0.355391	1101.91	1102.19	1	197.0	65.0%	3	R.RVGGDAEVVAE.-	2

RPA0244

82.1%

106

12149

10.6

rpsP, S16 ribosomal protein S16 268667:268987 reverse MW:12149

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.772.772.2	41.2895	0.20844	914.652	914.14	1	67.0	73.3%	1	M.SVVIRLAR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.715.715.3	37.3284	0.0359003	2332.82	2332.72	1	238.0	58.6%	1	R.AGTKKRPFYHVVVADSRFPR.D	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.925.925.2	69.0492	0.58175	1739.33	1739.99	1	206.0	81.5%	3	R.LGYFNPLMAKDNEAR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1090.1090.3	55.8027	0.477656	1740.83	1739.99	1	240.0	61.5%	2	R.LGYFNPLMAKDNEAR.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1230.1230.3	47.4404	0.409676	3405.83	3407.02	1	137.0	59.2%	1	R.LGYFNPLMAKDNEARLKLDLDKVKDWLAK.G	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1230.1230.2	31.7003	0.292142	2270.89	2271.62	1	0.0	53.6%	1	K.DNEARLKLDLDKVKDWLAK.G	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1106.1106.2	69.6	0.550463	1685.79	1686.05	1	177.0	84.0%	2	R.LKLDLDKVKDWLAK.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1269.1269.3	54.4032	0.363762	1686.89	1686.05	1	184.0	70.5%	3	R.LKLDLDKVKDWLAK.G	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.990.990.2	69.6923	0.492996	2398.55	2397.78	1	197.0	76.7%	1	R.LKLDLDKVKDWLAKGAQPSDR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1049.1049.3	48.5599	0.218359	2723.24	2724.18	1	167.0	64.7%	1	R.LKLDLDKVKDWLAKGAQPSDRVAR.F	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.961.961.2	34.0422	0.244714	2724.01	2724.18	1	24.0	57.1%	1	R.LKLDLDKVKDWLAKGAQPSDRVAR.F	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.652.652.2	51.0524	0.39936	880.572	879.004	1	201.0	86.7%	3	R.FLDTAGVR.K	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.249.249.2	30.2919	0.119002	1438.85	1438.63	1	2.0	45.5%	1	R.NNPEKAVPRKER.K	2

RPA3225

81.3%

139

15675

9.8

rplQ 50S ribosomal protein L17 3644784:3645203 reverse MW:15675

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.228.228.2	48.8314	0.466091	994.252	993.224	1	160.0	86.7%	1	-.MKHGKVHR.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1209.1209.3	62.1411	0.496198	2559.68	2560.17	1	171.0	68.1%	3	R.KAMFANMCAALIKHEQIVTTLPK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1140.1140.2	67.1359	0.607322	2559.91	2560.17	1	20.0	86.2%	3	R.KAMFANMCAALIKHEQIVTTLPK.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1469.1469.2	65.3271	0.607647	1285.05	1284.65	1	241.0	81.8%	2	K.AMFANMCAALIK.H	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1294.1294.2	65.2575	0.593158	2430.97	2431.99	1	198.0	77.4%	3	K.AMFANMCAALIKHEQIVTTLPK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1349.1349.3	57.2424	0.500652	2431.46	2431.99	1	102.0	66.2%	3	K.AMFANMCAALIKHEQIVTTLPK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1160.1160.2	56.6435	0.52275	2632.27	2631.24	1	164.0	73.3%	1	K.AMFANMCAALIKHEQIVTTLPKAK.E	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1272.1272.3	68.9861	0.52806	2633.63	2631.24	1	216.0	63.4%	1	K.AMFANMCAALIKHEQIVTTLPKAK.E	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.474.474.2	35.3053	0.198871	984.332	984.185	1	161.0	66.7%	3	K.ELRPIVEK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.410.410.1	35.4001	0.228734	984.65	984.185	1	100.0	83.3%	1	K.ELRPIVEK.L	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.375.375.3	34.8849	0.163486	1541.39	1541.88	1	209.0	51.1%	1	K.LVTLGKKGGLDKRR.Q	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1350.1350.3	53.7606	0.416536	2571.77	2572.05	1	245.0	68.3%	3	R.QAIAEMRDIEQVKKLFDVLAPR.Y	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1295.1295.2	41.594	0.369087	2574.65	2572.05	1	16.0	68.0%	1	R.QAIAEMRDIEQVKKLFDVLAPR.Y	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1435.1435.3	56.4604	0.494249	1772.0	1772.1	1	244.0	71.1%	2	R.DIEQVKKLFDVLAPR.Y	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1124.1124.2	52.9163	0.235462	930.812	931.123	1	251.0	86.7%	2	K.LFDVLAPR.Y	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1091.1091.3	42.02	0.260957	3817.7	3816.97	1	168.0	59.8%	2	R.YGDNAAMAVIEFVDRDEDAKGRDSGPTQDNSEAEAA.-	3

RPA3239

79.8%

104

11130

10.4

rplX 50S ribosomal protein L24 3653901:3654215 reverse MW:11130

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.412.412.2	52.0144	0.52627	1711.39	1712.09	1	192.0	67.9%	2	M.AAKIRKGDKVIVLSGR.D	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.481.481.3	48.9519	0.427857	1712.3	1712.09	1	191.0	66.7%	1	M.AAKIRKGDKVIVLSGR.D	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.414.414.2	41.3718	0.375828	1441.19	1441.76	1	194.0	66.7%	1	K.IRKGDKVIVLSGR.D	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.341.341.3	38.2073	0.253213	1629.02	1628.92	1	190.0	64.6%	1	R.KGDKVIVLSGRDKGR.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.302.302.2	40.2446	0.15868	1629.53	1628.92	1	136.0	61.5%	1	R.KGDKVIVLSGRDKGR.T	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.579.579.1	37.8935	0.368654	1404.57	1405.55	1	97.0	83.3%	1	R.TGEVFEVRPDAGK.A	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.666.666.2	59.1228	0.42075	1405.33	1405.55	1	245.0	73.9%	1	R.TGEVFEVRPDAGK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.819.819.2	43.5597	0.315783	1844.17	1845.11	1	192.0	70.4%	2	R.TGEVFEVRPDAGKALVR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.340.340.2	39.5322	0.051262	786.012	785.966	1	217.0	69.2%	3	R.GINVVKR.H	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.532.532.3	55.1042	0.445754	2450.87	2450.81	1	240.0	62.9%	3	R.GINVVKRHQKQTQTQEGGIISK.E	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.479.479.2	58.4779	0.556241	2451.69	2450.81	1	192.0	76.7%	2	R.GINVVKRHQKQTQTQEGGIISK.E	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.290.290.2	41.1588	0.478933	1684.15	1683.86	1	20.0	59.3%	1	R.HQKQTQTQEGGIISK.E	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.904.904.2	49.7477	0.459581	2526.07	2526.94	1	34.0	62.5%	3	K.EAPIDLSNIAIVGKDGKPTRVGFK.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1014.1014.3	37.4868	0.32297	2526.71	2526.94	1	102.0	55.6%	1	K.EAPIDLSNIAIVGKDGKPTRVGFK.I	3

RPA3255

78.0%

123

13875

11.5

rpsL 30S ribosomal protein S12 3663744:3664115 reverse MW:13875

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1059.1059.2	69.3072	0.551697	1237.85	1237.45	1	252.0	85.7%	3	M.PTINQLIANPR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.274.274.3	52.6424	0.499343	1509.14	1508.81	1	236.0	81.0%	2	R.KKVPALQQSPQKR.G	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.275.275.2	59.4487	0.462942	1509.55	1508.81	1	129.0	77.3%	2	R.KKVPALQQSPQKR.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.305.305.2	36.102	0.240953	1380.27	1380.63	1	27.0	54.5%	1	K.KVPALQQSPQKR.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.387.387.2	44.1729	0.446878	1576.65	1576.84	1	192.0	65.2%	3	R.VYTTTPKKPNSALR.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1138.1138.3	60.1705	0.562192	3266.48	3266.75	1	204.0	65.8%	3	K.VRLTNGFEVIGYIPGEGHNLQEHSVVMIR.G	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1152.1152.3	49.6662	0.493581	3010.58	3011.43	1	31.0	64.0%	3	R.LTNGFEVIGYIPGEGHNLQEHSVVMIR.G	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1079.1079.2	47.6762	0.483493	3011.55	3011.43	1	139.0	60.7%	3	R.LTNGFEVIGYIPGEGHNLQEHSVVMIR.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1132.1132.3	39.5498	0.367693	3282.68	3281.72	1	195.0	52.5%	2	R.LTNGFEVIGYIPGEGHNLQEHSVVMIRGGR.V	3
*3	Prep4_Anaer_Gradient_1st_052703_PPM.419.419.2	33.8858	0.157868	702.032	701.847	1	197.0	100.0%	1	R.YHILR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.449.449.2	52.0261	0.392864	1186.87	1187.34	1	222.0	78.9%	3	R.GVLDTQGVKNR.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.364.364.2	43.4768	0.301598	1316.39	1315.52	1	73.0	66.7%	2	R.GVLDTQGVKNRK.Q	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.233.233.2	40.1536	0.335935	1035.37	1035.24	1	193.0	70.6%	1	R.SKYGAKRPK.-	2

RPA3251

76.5%

102

11669

10.2

rpsJ 30S ribosomal protein S10 3659530:3659838 reverse MW:11668

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.572.572.3	38.9332	0.325999	1157.0	1156.38	1	240.0	54.5%	2	R.IRLKAFDHR.I	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.289.289.1	31.0062	0.182612	886.82	887.03	1	216.0	81.8%	1	R.LKAFDHR.I	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.288.288.2	44.3579	0.322542	889.972	887.03	1	224.0	84.6%	1	R.LKAFDHR.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.694.694.2	37.1518	0.21484	1717.87	1717.96	1	144.0	55.6%	2	R.ILDTSTREIVNTAKR.T	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.702.702.3	51.2882	0.378705	1718.75	1717.96	1	227.0	68.0%	3	R.ILDTSTREIVNTAKR.T	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.803.803.2	30.3254	0.183869	1834.65	1834.17	1	3.0	46.4%	1	R.TGAQVRGPIPLPTRIEK.F	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.955.955.3	44.8233	0.346916	1836.44	1834.17	1	217.0	63.5%	1	R.TGAQVRGPIPLPTRIEK.F	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.410.410.2	40.534	0.403405	1801.59	1799.08	1	0.0	56.0%	1	R.IEKFTVNRSPHVDKK.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.437.437.2	48.8965	0.470326	1083.15	1083.21	1	204.0	80.0%	1	K.SREQFEMR.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.490.490.1	28.157	0.0910928	839.34	839.947	1	169.0	90.0%	1	R.EQFEMR.T	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.1232.1232.2	78.285	0.57358	1869.61	1870.22	1	201.0	87.1%	3	R.LLDIVDPTPQTVDALMK.L	2

RPA4356

76.1%

230

23970

9.6

ctc, rplY, L25 putative 50S ribosomal protein L25 4906874:4907566 reverse MW:23969

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.690.690.1	37.8781	0.105985	789.82	789.948	1	43.0	100.0%	2	M.TSVLELK.A	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.745.745.3	46.2361	0.329003	1412.84	1414.69	1	223.0	71.4%	3	M.TSVLELKATARPK.S	2 3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.539.539.1	38.0485	0.331866	1414.71	1414.69	1	17.0	77.8%	1	M.TSVLELKATARPK.S	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.615.615.2	62.7362	0.401653	1415.05	1414.69	1	232.0	85.7%	3	M.TSVLELKATARPK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.492.492.2	51.2566	0.389236	2041.99	2042.39	1	4.0	72.7%	2	M.TSVLELKATARPKSGKGAAR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.600.600.3	39.753	0.348472	2042.0	2042.39	1	246.0	58.3%	3	M.TSVLELKATARPKSGKGAAR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.959.959.3	48.2164	0.394154	2982.83	2981.38	1	212.0	66.7%	2	R.RAGRVPGVIYGDNQSPLPISVEEKELR.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.895.895.2	67.5235	0.578242	2427.13	2426.73	1	204.0	78.1%	1	R.AGRVPGVIYGDNQSPLPISVEEK.E	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1007.1007.2	60.9802	0.541112	2824.45	2825.2	1	193.0	78.6%	2	R.AGRVPGVIYGDNQSPLPISVEEKELR.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1003.1003.3	66.8002	0.58787	2826.98	2825.2	1	190.0	71.8%	1	R.AGRVPGVIYGDNQSPLPISVEEKELR.L	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1039.1039.3	52.1036	0.419531	3094.19	3094.54	1	192.0	72.6%	1	R.AGRVPGVIYGDNQSPLPISVEEKELRLR.I	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.662.662.2	43.725	0.106461	800.272	799.008	1	222.0	76.9%	1	R.LRILAGR.F	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1223.1223.2	57.8591	0.488374	1582.09	1582.88	1	143.0	65.4%	1	R.FLTTVFDVVLDGKK.H	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1434.1434.3	40.7252	0.172274	1583.0	1582.88	1	142.0	51.1%	1	R.FLTTVFDVVLDGKK.H	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1259.1259.3	44.8182	0.356538	1876.16	1876.21	1	212.0	66.7%	2	R.FLTTVFDVVLDGKKHR.V	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1094.1094.2	63.5144	0.567194	1876.75	1876.21	1	242.0	77.8%	2	R.FLTTVFDVVLDGKKHR.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1059.1059.2	45.6196	0.430379	2720.49	2721.14	1	176.0	63.0%	2	R.VIPRDYHLDPVRDFPIHVDFLR.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1139.1139.3	41.7512	0.378662	2721.08	2721.14	1	208.0	61.5%	3	R.VIPRDYHLDPVRDFPIHVDFLR.L	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1187.1187.3	68.4727	0.604774	2256.14	2255.54	1	238.0	69.1%	2	R.DYHLDPVRDFPIHVDFLR.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1117.1117.2	51.4776	0.520984	2256.45	2255.54	1	48.0	76.0%	3	R.DYHLDPVRDFPIHVDFLR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.400.400.2	43.1952	0.365934	759.612	758.897	1	250.0	81.2%	1	R.LGAGATIR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.953.953.2	43.5192	0.423091	1744.69	1744.13	1	57.0	53.3%	1	R.VSVPLHLKGLEVAPGVK.R	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1129.1129.3	48.0681	0.414177	1745.09	1744.13	1	143.0	62.3%	1	R.VSVPLHLKGLEVAPGVK.R	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.885.885.2	67.3828	0.482016	1899.63	1900.32	1	167.0	71.0%	2	R.VSVPLHLKGLEVAPGVKR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1051.1051.3	48.5821	0.337978	1900.37	1900.32	1	194.0	60.7%	1	R.VSVPLHLKGLEVAPGVKR.G	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.592.592.2	38.3097	0.20376	1027.51	1026.22	1	161.0	73.7%	1	K.GLEVAPGVKR.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.862.862.3	37.5471	0.535575	4348.28	4347.88	1	231.0	34.7%	1	K.SVSRDDVTLVTIVPPSGYNEDKAAAGAAPAAAAAPAAAAKAPAAAAK.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.245.245.1	54.736	0.603082	839.68	838.983	1	245.0	93.8%	1	K.APAAAAPAAK.K	1

RPA3243

75.2%

137

15282

11.8

rplP 50S ribosomal protein L16 3655123:3655536 reverse MW:15282

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1255.1255.3	48.5816	0.312182	1862.57	1862.14	1	244.0	63.9%	2	R.IHGVASSGATLAFGQFGLK.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1062.1062.2	104.206	0.659593	1862.83	1862.14	1	123.0	100.0%	2	R.IHGVASSGATLAFGQFGLK.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.399.399.1	29.6312	0.281909	1173.85	1174.37	1	17.0	71.4%	1	K.AMEPERITAR.Q	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.437.437.2	42.1482	0.24881	1174.07	1174.37	1	0.0	68.4%	1	K.AMEPERITAR.Q	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.500.500.2	35.6362	0.159537	858.672	858.035	1	206.0	69.2%	2	R.AGRVWIR.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.900.900.2	54.1577	0.389797	2237.19	2237.7	1	193.0	67.9%	1	R.VWIRVFPDLPVSKKPAEVR.M	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1011.1011.3	50.7609	0.393846	2237.93	2237.7	1	187.0	64.3%	2	R.VWIRVFPDLPVSKKPAEVR.M	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.775.775.2	63.7052	0.520446	1683.09	1683.0	1	60.0	75.0%	3	R.VFPDLPVSKKPAEVR.M	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.783.783.3	42.3953	0.420455	1683.89	1683.0	1	153.0	62.5%	3	R.VFPDLPVSKKPAEVR.M	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.670.670.1	46.0832	0.459165	1474.59	1475.71	1	66.0	81.0%	2	R.MGSGKGSPELWVAR.V	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.767.767.2	59.0339	0.448515	1475.47	1475.71	1	204.0	76.0%	2	R.MGSGKGSPELWVAR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.912.912.3	51.2469	0.302842	1475.99	1475.71	1	244.0	72.1%	3	R.MGSGKGSPELWVAR.V	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.935.935.3	56.7471	0.449364	2157.77	2158.53	1	166.0	69.0%	2	R.VKPGRVMFEIDGVNQQIAR.E	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.922.922.2	54.9254	0.472069	2158.09	2158.53	1	194.0	64.5%	3	R.VKPGRVMFEIDGVNQQIAR.E	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1412.1412.3	51.681	0.400602	3199.07	3198.8	1	119.0	69.1%	2	R.VMFEIDGVNQQIAREALTLAAAKLPIKTR.F	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.782.782.1	40.3673	0.390747	1595.96	1596.96	1	129.0	78.3%	1	R.EALTLAAAKLPIKTR.F	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.877.877.3	45.6041	0.433318	1597.01	1596.96	1	124.0	74.5%	2	R.EALTLAAAKLPIKTR.F	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.879.879.2	62.4141	0.489095	1597.75	1596.96	1	222.0	84.0%	3	R.EALTLAAAKLPIKTR.F	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1131.1131.3	38.7292	0.197231	2072.66	2070.53	1	243.0	51.7%	1	R.EALTLAAAKLPIKTRFVAR.I	3

RPA3272

75.1%

229

24010

9.6

rplA 50S ribosomal protein L1 3690510:3691199 reverse MW:24010

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1006.1006.3	39.2843	0.320136	1848.02	1848.11	1	64.0	55.6%	1	R.EGIDRTKLYPLDEAVK.L	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1030.1030.2	37.0476	0.332448	2472.87	2473.88	1	20.0	60.7%	2	R.EGIDRTKLYPLDEAVKLVKER.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1027.1027.3	58.1493	0.454145	2476.31	2473.88	1	102.0	73.0%	1	R.EGIDRTKLYPLDEAVKLVKER.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1009.1009.2	66.6025	0.556897	1903.25	1903.27	1	136.0	79.3%	2	R.TKLYPLDEAVKLVKER.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1189.1189.3	64.1004	0.479187	1903.4	1903.27	1	229.0	73.6%	2	R.TKLYPLDEAVKLVKER.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.252.252.2	44.4998	0.42277	856.992	856.981	1	232.0	85.7%	1	R.HADQMVR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.874.874.2	53.5452	0.422131	1101.13	1101.32	1	212.0	94.1%	3	R.GVVMLPNGTGR.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.530.530.2	36.2102	0.131761	648.852	648.783	1	226.0	81.8%	3	R.VGVFAR.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1182.1182.3	70.6481	0.552063	3330.26	3330.59	1	251.0	73.9%	4	R.GAKADEAKAAGADVVGAEDLVEQVQAGNINFDR.C	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1111.1111.2	95.8903	0.656251	3331.31	3330.59	1	166.0	96.8%	3	R.GAKADEAKAAGADVVGAEDLVEQVQAGNINFDR.C	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1250.1250.3	74.9788	0.610541	2559.68	2559.75	1	255.0	71.6%	2	K.AAGADVVGAEDLVEQVQAGNINFDR.C	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1190.1190.2	94.5709	0.614386	2560.47	2559.75	1	231.0	96.9%	5	K.AAGADVVGAEDLVEQVQAGNINFDR.C	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.337.337.2	48.809	0.237003	840.232	840.057	1	248.0	86.7%	2	R.LGKVLGPR.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.375.375.1	40.3125	0.439586	774.42	774.982	1	150.0	100.0%	3	R.GMMPNPK.I	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1014.1014.2	63.0365	0.581876	1261.93	1262.51	1	164.0	87.0%	2	K.IGTVTMDVAGAVK.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.754.754.1	26.9057	0.31894	1262.84	1262.51	1	20.0	60.0%	1	K.IGTVTMDVAGAVK.G	1
*	Prep4_Anaer_Gradient_3rd_052703_PPM.730.730.1	32.1765	0.273616	1519.25	1518.82	1	200.0	58.3%	1	K.IGTVTMDVAGAVKGAK.G	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.979.979.3	48.3629	0.392257	1521.5	1518.82	1	118.0	64.0%	2	K.IGTVTMDVAGAVKGAK.G	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1041.1041.2	76.8176	0.646296	2344.59	2345.7	1	244.0	82.4%	2	K.AGIIQAGVGKASFDADKLVENIK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1160.1160.3	74.8356	0.570464	2345.84	2345.7	1	123.0	73.5%	3	K.AGIIQAGVGKASFDADKLVENIK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1276.1276.2	82.8037	0.598612	2231.97	2233.53	1	242.0	84.4%	2	K.ASFDADKLVENIKALADAVNK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1333.1333.3	66.5118	0.555977	2233.55	2233.53	1	239.0	64.7%	1	K.ASFDADKLVENIKALADAVNK.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1235.1235.3	60.1965	0.440911	3592.19	3592.09	1	142.0	70.5%	3	K.ASFDADKLVENIKALADAVNKAKPSGAKGTYIQR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.415.415.2	35.6841	0.138717	1441.47	1441.67	1	3.0	48.1%	1	K.ALADAVNKAKPSGAK.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.650.650.2	48.3956	0.474541	2159.75	2160.48	1	168.0	58.8%	1	K.ALADAVNKAKPSGAKGTYIQR.V	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.649.649.3	60.3628	0.552579	2161.28	2160.48	1	252.0	68.8%	1	K.ALADAVNKAKPSGAKGTYIQR.V	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.317.317.2	43.3962	0.442156	1376.73	1377.59	1	44.0	65.2%	1	K.AKPSGAKGTYIQR.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.529.529.1	40.3333	0.373815	1132.6	1133.35	1	152.0	72.2%	1	R.VAVSSTMGPGVK.V	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.754.754.2	70.0841	0.646529	1853.33	1853.15	1	188.0	80.6%	3	R.VAVSSTMGPGVKVEPGTVH.-	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.760.760.1	45.1504	0.536372	1853.37	1853.15	1	132.0	67.9%	1	R.VAVSSTMGPGVKVEPGTVH.-	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.899.899.3	62.8214	0.526661	1854.08	1853.15	1	231.0	73.3%	3	R.VAVSSTMGPGVKVEPGTVH.-	3

RPA2922

73.4%

331

36044

6.7

rpsB 30S ribosomal protein S2 3302284:3303279 reverse MW:36044

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.862.862.2	38.0496	0.397289	967.052	967.133	1	90.0	73.3%	1	M.SLPEFSMR.Q	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.657.657.2	47.3868	0.315744	1717.31	1716.9	1	9.0	74.1%	1	R.QLLEAGVHFGHQSHR.W	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.743.743.3	38.4457	0.303587	2242.34	2242.51	1	84.0	67.3%	1	R.QLLEAGVHFGHQSHRWNPK.M	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.641.641.2	40.8181	0.420975	2243.41	2242.51	1	1.0	64.3%	2	R.QLLEAGVHFGHQSHRWNPK.M	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1151.1151.2	62.9903	0.566609	1071.63	1072.27	1	247.0	88.2%	2	K.MADYIFGVR.N	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1201.1201.2	34.458	0.336679	3036.23	3037.56	1	80.0	55.2%	2	K.MADYIFGVRNNIHIVDLTQTVPLLHR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1305.1305.3	67.5582	0.621947	3038.48	3037.56	1	173.0	71.2%	3	K.MADYIFGVRNNIHIVDLTQTVPLLHR.A	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1261.1261.3	66.2766	0.431065	1983.26	1984.31	1	150.0	75.4%	3	R.NNIHIVDLTQTVPLLHR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1069.1069.2	93.5422	0.671709	1984.83	1984.31	1	230.0	92.9%	2	R.NNIHIVDLTQTVPLLHR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.841.841.2	41.9633	0.389979	1117.29	1117.29	1	105.0	70.0%	1	R.ALQAISDTVAK.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.604.604.1	42.9146	0.480489	1117.5	1117.29	1	69.0	82.4%	2	R.ALQAISDTVAK.G	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.688.688.2	72.4326	0.64679	1387.41	1387.58	1	159.0	87.0%	5	R.ALQAISDTVAKGGR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.569.569.2	37.332	0.292628	919.892	920.143	1	165.0	73.3%	2	R.VLFVGTKR.Q	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.761.761.3	40.8543	0.25532	2145.77	2145.47	1	87.0	57.1%	1	R.VLFVGTKRQAQDAVADAAKR.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.299.299.2	46.3676	0.414119	1244.37	1244.35	1	151.0	65.2%	2	R.QAQDAVADAAKR.S	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.552.552.2	47.2162	0.416944	1227.87	1228.35	1	116.0	68.4%	3	K.RSAQYFVNSR.W	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.964.964.1	39.516	0.431564	1175.71	1176.36	1	96.0	82.4%	4	R.WLGGTLTNWK.T	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1244.1244.2	57.4902	0.612207	1176.25	1176.36	1	138.0	89.5%	3	R.WLGGTLTNWK.T	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.677.677.2	60.6488	0.55469	2418.93	2417.69	1	232.0	74.2%	1	R.LRHLEDVLSSADANAYTKKER.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.736.736.2	85.5341	0.677981	2147.95	2148.34	1	235.0	87.5%	1	R.HLEDVLSSADANAYTKKER.L	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1309.1309.3	70.8366	0.593443	3457.85	3458.96	1	71.0	71.6%	1	R.SLGGIKDMGGLPDLIFVIDTNKEDIAIQEAQR.L	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1139.1139.2	77.8927	0.62867	1625.95	1626.91	1	127.0	79.3%	3	R.LGIPVAAIVDTNCDPK.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1021.1021.1	36.8357	0.459125	1626.14	1626.91	1	133.0	64.0%	1	R.LGIPVAAIVDTNCDPK.G	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1326.1326.3	52.0856	0.468796	3055.94	3056.47	1	218.0	62.8%	3	R.LGIPVAAIVDTNCDPKGITYLVPGNDDAGR.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1205.1205.2	58.8943	0.553896	3056.25	3056.47	1	168.0	72.4%	3	R.LGIPVAAIVDTNCDPKGITYLVPGNDDAGR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1469.1469.3	39.1185	0.363061	4246.31	4245.91	1	102.0	52.8%	1	R.LGIPVAAIVDTNCDPKGITYLVPGNDDAGRAIALYCDLVAR.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.832.832.2	50.9517	0.410601	1447.79	1448.58	1	201.0	78.3%	2	K.GITYLVPGNDDAGR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.735.735.1	37.9671	0.426553	1448.81	1448.58	1	48.0	85.0%	1	K.GITYLVPGNDDAGR.A	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.1387.1387.2	40.6702	0.420163	2637.55	2638.02	1	144.0	56.2%	3	K.GITYLVPGNDDAGRAIALYCDLVAR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1446.1446.3	54.2723	0.514559	2638.16	2638.02	1	178.0	65.8%	3	K.GITYLVPGNDDAGRAIALYCDLVAR.A	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.710.710.2	47.9664	0.29131	831.172	830.96	1	184.0	80.0%	2	R.AVIDGISR.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1202.1202.3	73.2459	0.581216	3504.83	3503.9	1	162.0	65.2%	2	R.AQGDVGIDIGAAAQPLREDLPAAQATTFQGLPGPR.G	3

RPA3234

72.5%

120

13037

10.6

rplR 50S ribosomal protein L18 3651568:3651930 reverse MW:13037

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.889.889.2	84.4951	0.656288	2749.93	2750.04	1	234.0	93.5%	3	R.SSKHIYAQVIDDAKGETLASASSLEK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1004.1004.3	71.2071	0.60392	2752.07	2750.04	1	178.0	63.6%	3	R.SSKHIYAQVIDDAKGETLASASSLEK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1116.1116.3	62.9228	0.581134	3137.72	3138.53	1	226.0	67.1%	1	R.SSKHIYAQVIDDAKGETLASASSLEKTMR.D	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.989.989.2	88.7831	0.689448	2447.89	2447.71	1	214.0	82.4%	3	K.HIYAQVIDDAKGETLASASSLEK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1007.1007.3	80.3731	0.62477	2450.06	2447.71	1	183.0	68.1%	3	K.HIYAQVIDDAKGETLASASSLEK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.405.405.2	76.6729	0.539989	1606.69	1606.76	1	239.0	92.0%	2	K.TMRDAGNTGANIDAAK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.916.916.3	54.4995	0.538491	2530.97	2530.87	1	114.0	67.5%	1	K.TMRDAGNTGANIDAAKAVGKLVAER.A	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.387.387.2	43.6305	0.299013	943.552	943.135	1	208.0	76.5%	2	K.AVGKLVAER.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.661.661.2	44.0898	0.388078	1476.21	1476.72	1	192.0	73.9%	1	R.AVEKGVKEVVFDR.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.694.694.2	35.975	0.256261	2380.89	2380.71	1	208.0	58.6%	3	R.AVEKGVKEVVFDRGGYLYHGR.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.787.787.3	44.7995	0.132169	2381.66	2380.71	1	156.0	66.7%	2	R.AVEKGVKEVVFDRGGYLYHGR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.292.292.2	45.868	0.360746	915.892	915.081	1	177.0	76.5%	1	R.VKALADAAR.E	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.842.842.1	37.5971	0.36814	1535.62	1535.74	1	145.0	72.7%	1	R.VKALADAARESGLSF.-	1

RPA3077

72.2%

158

17932

5.7

RPS6 possible 30S ribosomal protein S6 3482765:3483241 forward MW:17932

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1020.1020.2	67.6782	0.518235	1244.97	1245.47	1	244.0	100.0%	3	M.PLYEHVFLAR.Q	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1019.1019.3	56.0798	0.496177	1246.91	1245.47	1	253.0	81.2%	3	M.PLYEHVFLAR.Q	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1480.1480.3	65.3669	0.651645	4129.43	4128.67	1	236.0	63.6%	2	M.PLYEHVFLARQDASAQQVEELTTQITGVIEGLGGKVTK.T	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1655.1655.3	74.8695	0.537002	2572.85	2573.82	1	253.0	72.9%	3	R.QDASAQQVEELTTQITGVIEGLGGK.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1567.1567.2	78.1844	0.593966	2573.95	2573.82	1	222.0	83.9%	3	R.QDASAQQVEELTTQITGVIEGLGGK.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1533.1533.2	46.4467	0.300023	2901.81	2902.23	1	11.0	56.7%	3	R.QDASAQQVEELTTQITGVIEGLGGKVTK.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1614.1614.3	55.8258	0.435009	2902.31	2902.23	1	42.0	73.1%	2	R.QDASAQQVEELTTQITGVIEGLGGKVTK.T	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1577.1577.3	52.6288	0.31323	3731.39	3732.14	1	173.0	65.9%	4	R.QDASAQQVEELTTQITGVIEGLGGKVTKTESWGLR.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1620.1620.3	35.2431	0.280205	4353.59	4352.85	1	45.0	54.7%	1	R.QDASAQQVEELTTQITGVIEGLGGKVTKTESWGLRSLTYR.M	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1191.1191.2	30.9872	0.159266	2693.39	2693.08	1	160.0	46.9%	1	R.KAHFVLLNIDGPAAVVSEIERQER.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1356.1356.2	53.7155	0.480338	2154.33	2151.47	1	33.0	64.7%	1	K.AHFVLLNIDGPAAVVSEIER.Q	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1256.1256.2	57.658	0.45426	2565.15	2564.91	1	144.0	69.7%	3	K.AHFVLLNIDGPAAVVSEIERQER.I	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1319.1319.3	44.9202	0.288198	2565.23	2564.91	1	251.0	60.6%	1	K.AHFVLLNIDGPAAVVSEIERQER.I	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1374.1374.3	42.1721	0.372011	3404.78	3404.85	1	140.0	61.5%	3	K.AHFVLLNIDGPAAVVSEIERQERINEDVIR.Y	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.714.714.2	50.9077	0.189596	859.032	858.971	1	238.0	84.6%	2	R.INEDVIR.Y	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.822.822.3	55.2675	0.485549	2120.75	2121.4	1	223.0	70.2%	2	R.YLTVRVDEHEEGPSAMMR.K	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.823.823.2	62.001	0.535875	2120.95	2121.4	1	248.0	67.7%	3	R.YLTVRVDEHEEGPSAMMR.K	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.512.512.2	32.4426	0.268169	1600.67	1597.68	1	144.0	50.0%	1	R.RPREDADAPAAAVEE.-	2

RPA3273

71.1%

142

15471

9.6

rplK 50S ribosomal protein L11 3691207:3691635 reverse MW:15471

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.946.946.2	75.8445	0.568799	2011.19	2012.32	1	152.0	75.7%	3	K.LQVPAGAANPSPPIGPALGQR.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1061.1061.1	35.6972	0.4059	1572.94	1572.85	1	12.0	71.4%	3	K.NTPIPVVITIYADR.S	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1180.1180.2	56.2524	0.490991	1573.17	1572.85	1	36.0	76.0%	1	K.NTPIPVVITIYADR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.864.864.1	37.8914	0.450886	889.58	890.047	1	57.0	100.0%	2	R.SFTFEMK.T	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1005.1005.1	41.6046	0.472635	1083.65	1084.32	1	82.0	100.0%	3	K.TPPMSYFLK.Q	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1165.1165.2	54.0771	0.513389	1084.31	1084.32	1	135.0	87.5%	3	K.TPPMSYFLK.Q	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.725.725.3	55.3295	0.51131	2303.54	2303.63	1	219.0	67.6%	3	K.IQSGSKLPGRDFAGKVTSAQVR.E	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.630.630.2	47.385	0.453044	2303.65	2303.63	1	160.0	65.6%	2	K.IQSGSKLPGRDFAGKVTSAQVR.E	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.717.717.2	50.4278	0.49888	2312.09	2312.69	1	105.0	67.9%	1	R.EIAEKKMKDLNCDTVESAMR.M	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.774.774.2	63.8024	0.563524	1741.43	1742.05	1	117.0	80.8%	1	K.KMKDLNCDTVESAMR.M	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.773.773.3	51.4496	0.431173	1742.15	1742.05	1	246.0	61.8%	2	K.KMKDLNCDTVESAMR.M	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.756.756.2	41.4313	0.409302	849.452	848.999	1	160.0	78.6%	1	R.SMGLRVEG.-	2

RPA3078

68.4%

9095

11.5

RPS18 30S ribosomal protein S18 3483247:3483486 forward MW:9094

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.457.457.2	31.8048	0.263828	723.492	722.868	1	68.0	80.0%	1	R.RPFFR.R	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.580.580.2	44.2277	0.464939	2242.25	2241.58	1	32.0	61.3%	1	R.RKTCPFTGANAPKIDYKDSK.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.642.642.2	53.1398	0.505024	1235.53	1235.45	1	227.0	81.8%	2	R.KTCPFTGANAPK.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.705.705.2	58.6634	0.525779	2084.75	2085.39	1	46.0	75.0%	1	R.KTCPFTGANAPKIDYKDSK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.765.765.2	62.4086	0.576068	1956.61	1957.21	1	118.0	76.7%	1	K.TCPFTGANAPKIDYKDSK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.610.610.2	59.3114	0.48956	1429.31	1427.73	1	164.0	84.0%	2	R.GKIVPSRITAVSAK.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.507.507.3	45.1827	0.382514	1840.34	1840.22	1	108.0	59.3%	3	R.GKIVPSRITAVSAKKQR.E	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.751.751.2	49.4182	0.465128	1242.05	1242.51	1	68.0	77.3%	2	K.IVPSRITAVSAK.K	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1256.1256.2	55.6222	0.382912	1418.91	1418.77	1	252.0	72.7%	1	R.ARFLGLLPYVIR.-	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1426.1426.3	37.7148	0.158049	1420.34	1418.77	1	232.0	57.5%	1	R.ARFLGLLPYVIR.-	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1499.1499.2	62.4394	0.390795	1191.41	1191.5	1	244.0	100.0%	3	R.FLGLLPYVIR.-	2

RPA3238

63.2%

185

21038

9.2

rplE 50S ribosomal protein L5 3653351:3653908 reverse MW:21038

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.479.479.2	45.8271	0.389571	907.112	907.014	1	49.0	80.0%	3	M.AETAYVPR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.362.362.2	32.9002	0.345873	1359.17	1359.53	1	33.0	66.7%	1	R.LRTEYDRHIR.T	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1060.1060.3	42.4544	0.423	3555.77	3554.11	1	105.0	59.3%	1	K.LDKVVLNMGVGEAVNDRKKAEQAAADLSLIAGQK.A	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.487.487.2	37.3456	0.291386	809.912	809.941	1	216.0	90.0%	1	K.AVITYSR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.987.987.3	46.1413	0.270101	1905.56	1905.27	1	174.0	68.6%	2	R.VAISTFKLRENQPIGCK.V	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.837.837.2	45.729	0.415399	1905.89	1905.27	1	132.0	60.0%	1	R.VAISTFKLRENQPIGCK.V	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.824.824.2	39.5868	0.275402	2375.21	2374.86	1	4.0	55.2%	2	R.VAISTFKLRENQPIGCKVTLR.Q	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.936.936.3	55.675	0.470414	2375.45	2374.86	1	245.0	68.8%	2	R.VAISTFKLRENQPIGCKVTLR.Q	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.830.830.3	39.7994	0.3963	1625.96	1627.95	1	84.0	60.4%	1	K.LRENQPIGCKVTLR.Q	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.972.972.2	42.6248	0.376884	973.912	974.124	1	187.0	84.6%	2	R.MYEFIDR.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1469.1469.2	66.5264	0.53216	1837.75	1838.22	1	54.0	78.6%	3	R.MYEFIDRLITVALPR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1629.1629.3	63.2081	0.483917	1838.51	1838.22	1	221.0	76.6%	2	R.MYEFIDRLITVALPR.V	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1070.1070.2	50.3805	0.382507	883.052	883.123	1	109.0	100.0%	3	R.LITVALPR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.565.565.2	42.3667	0.336998	1202.57	1202.4	1	6.0	77.8%	3	R.VRDFRGLNPK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1325.1325.2	65.6383	0.441753	1425.73	1425.67	1	236.0	85.7%	2	R.ALLTAFNFPFRQ.-	2

RPA3248

61.6%

10909

9.9

rplW 50S ribosomal protein L23 3657836:3658135 reverse MW:10908

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.801.801.2	53.7941	0.445127	2298.91	2298.71	1	41.0	69.2%	1	-.MKSIDPRHYDVIVAPVVTEK.S	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.719.719.1	64.3976	0.588506	1469.93	1470.71	1	189.0	95.0%	2	R.HYDVIVAPVVTEK.S	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.815.815.2	73.2079	0.531519	1470.39	1470.71	1	250.0	86.4%	3	R.HYDVIVAPVVTEK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.464.464.2	53.7024	0.555376	1480.05	1478.71	1	162.0	76.2%	3	K.STMASEHNKVVFK.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.417.417.2	44.4956	0.404476	1016.91	1016.23	1	152.0	76.5%	3	K.VKSVNTLVR.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.465.465.2	37.5929	0.257554	789.132	788.923	1	160.0	84.6%	3	K.SVNTLVR.K	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.336.336.3	41.5372	0.302445	2114.48	2113.43	1	105.0	59.0%	1	R.KGKTKAFRGTFGTQSDVKR.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.505.505.2	30.8695	0.181642	1800.71	1800.03	1	192.0	50.0%	1	K.TKAFRGTFGTQSDVKR.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.313.313.2	40.8831	0.310473	1196.33	1196.31	1	114.0	70.0%	1	R.GTFGTQSDVKR.A	2

RPA4836

61.4%

9709

12.0

rpsT 30S ribosomal protein S20 5458392:5458658 forward MW:9709

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.217.217.2	51.1098	0.514543	1135.05	1135.27	1	173.0	71.4%	1	M.ANTSSAKKATR.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.219.219.2	41.2427	0.280614	1263.39	1263.44	1	18.0	63.6%	1	M.ANTSSAKKATRK.I	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.250.250.2	34.1932	0.143142	932.392	932.072	1	4.0	68.8%	1	R.RTAVNKSR.R	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.724.724.2	73.5058	0.466743	1658.69	1658.85	1	251.0	75.9%	3	R.IVEEAIASGDRDAALK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.854.854.2	55.6056	0.503239	2087.83	2088.39	1	192.0	66.7%	3	R.IVEEAIASGDRDAALKAMAR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1009.1009.3	66.0042	0.586963	2088.98	2088.39	1	237.0	61.4%	5	R.IVEEAIASGDRDAALKAMAR.A	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.549.549.1	27.1775	0.0854494	845.73	845.995	1	148.0	81.8%	1	R.AEPELMR.A	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.257.257.1	36.0205	0.1661	769.41	769.92	1	209.0	90.9%	2	R.LTHSIAK.L	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.289.289.2	33.5628	0.19535	770.072	769.92	1	145.0	78.6%	2	R.LTHSIAK.L	2

RPA3242

60.9%

7981

10.6

rpmC 50S ribosomal protein L29 3654908:3655117 reverse MW:7981

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.997.997.2	59.6146	0.541163	1795.73	1796.07	1	244.0	72.4%	1	R.AMSEDQMDDAILSLKK.E	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.954.954.2	71.3554	0.640798	2080.73	2081.38	1	241.0	79.3%	3	R.AMSEDQMDDAILSLKKER.F	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1115.1115.3	51.267	0.368147	2080.82	2081.38	1	106.0	67.8%	5	R.AMSEDQMDDAILSLKKER.F	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.392.392.2	52.0575	0.515993	1508.99	1508.64	1	226.0	75.0%	2	R.FQRATGQLENTSR.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.264.264.1	35.1649	0.420775	1076.67	1077.14	1	66.0	93.3%	2	R.ATGQLENTSR.L	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.297.297.2	45.143	0.397685	1076.97	1077.14	1	224.0	73.7%	2	R.ATGQLENTSR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.546.546.2	35.2251	0.159886	1346.07	1346.49	1	0.0	61.9%	1	R.ATGQLENTSRLR.E	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.259.259.2	46.5288	0.280042	1029.49	1029.27	1	78.0	82.4%	2	R.IKTIAAQKR.A	2

RPA3237

59.4%

101

11464

11.7

rpsN 30S ribosomal protein S14 3653002:3653307 reverse MW:11463

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.395.395.1	34.999	0.0749936	871.78	872.096	1	211.0	76.9%	1	R.LKAIIADK.S	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.397.397.2	48.3854	0.116124	872.252	872.096	1	180.0	86.7%	1	R.LKAIIADK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.564.564.2	76.483	0.520486	1729.89	1730.08	1	253.0	81.5%	3	R.LKAIIADKSKPMEER.F	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.684.684.3	68.3738	0.464191	1730.12	1730.08	1	219.0	80.9%	3	R.LKAIIADKSKPMEER.F	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.757.757.2	54.9886	0.503786	2364.03	2361.86	1	194.0	70.0%	1	R.LKAIIADKSKPMEERFAATLK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.371.371.2	67.9046	0.529789	1488.27	1488.75	1	242.0	90.0%	2	K.AIIADKSKPMEER.F	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.467.467.2	34.6402	0.212741	650.912	650.796	1	153.0	75.0%	1	R.FAATLK.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.540.540.1	37.3647	0.2745	651.35	650.796	1	152.0	100.0%	3	R.FAATLK.L	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1087.1087.2	65.4328	0.535508	1349.81	1348.65	1	242.0	86.4%	1	R.FAATLKLAEMPR.N	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.976.976.3	38.1722	0.1434	1965.26	1965.28	1	252.0	58.9%	1	R.FAATLKLAEMPRNSSATR.I	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.674.674.3	41.5627	0.377122	1237.4	1236.46	1	139.0	62.9%	2	R.SVYRLNKLSR.I	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.620.620.1	33.428	0.252055	1000.71	1001.17	1	132.0	92.3%	2	R.IAIRDLGSR.G	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.750.750.2	39.2415	0.202209	1001.27	1001.17	1	196.0	70.6%	3	R.IAIRDLGSR.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.944.944.1	40.5862	0.262365	798.81	799.045	1	192.0	92.3%	2	R.GLVLGLVK.S	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.930.930.2	45.3657	0.160302	799.312	799.045	1	218.0	80.0%	3	R.GLVLGLVK.S	2

RPA3235

58.2%

177

19404

9.6

rplF 50S ribosomal protein L6 3651942:3652475 reverse MW:19404

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.732.732.3	60.2071	0.577847	2426.51	2426.82	1	158.0	65.8%	1	M.SRVGKKPVTVPSGVTATVEGQTVK.M	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.739.739.2	60.5843	0.577972	2426.99	2426.82	1	98.0	74.3%	3	M.SRVGKKPVTVPSGVTATVEGQTVK.M	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.845.845.1	39.5286	0.357506	1242.66	1243.45	1	144.0	77.8%	1	R.AQIANLVEGVTK.G	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1120.1120.2	63.5688	0.577335	1243.07	1243.45	1	120.0	77.3%	1	R.AQIANLVEGVTK.G	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1143.1143.2	79.1611	0.606989	1704.81	1704.96	1	246.0	86.2%	3	R.AQIANLVEGVTKGFEK.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1350.1350.3	50.145	0.390882	1705.1	1704.96	1	216.0	68.0%	3	R.AQIANLVEGVTKGFEK.K	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1369.1369.3	73.3079	0.629186	2822.51	2822.28	1	229.0	77.0%	1	R.AQIANLVEGVTKGFEKKLEITGVGYR.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1262.1262.2	69.5016	0.610111	2822.63	2822.28	1	106.0	75.9%	2	R.AQIANLVEGVTKGFEKKLEITGVGYR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.859.859.2	64.0627	0.294563	1136.25	1136.34	1	248.0	89.5%	2	K.KLEITGVGYR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.620.620.1	36.2432	0.359847	1136.86	1136.34	1	85.0	76.5%	1	K.KLEITGVGYR.A	1
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1272.1272.3	34.769	0.269484	4277.45	4276.96	1	186.0	53.0%	1	K.KLQLALGYSHDVLYDIPEGITITVPKPTEINVVGIDPQK.V	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.596.596.2	47.9507	0.429833	1759.11	1760.05	1	2.0	78.3%	1	R.YADEFIFRKEGKKK.-	2

RPA3244

57.0%

235

26270

10.0

rpsC 30S ribosomal protein S3 3655572:3656279 reverse MW:26270

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.769.769.2	52.4202	0.515429	1096.53	1096.32	1	226.0	84.2%	3	M.GQKINPIGLR.L	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.775.775.3	35.0158	0.339293	1096.73	1096.32	1	157.0	74.2%	1	M.GQKINPIGLR.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.519.519.1	38.6817	0.440345	1200.8	1200.34	1	81.0	81.2%	1	R.WFAGKNEYGK.L	1
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1020.1020.3	38.8165	0.299321	3894.2	3892.54	1	57.0	55.6%	1	R.WFAGKNEYGKLLHEDVKIREILHKELKQAAVAR.I	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.875.875.2	68.1079	0.343433	2113.99	2114.54	1	8.0	88.5%	1	K.LLHEDVKIREILHKELK.Q	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.869.869.3	52.2513	0.39545	2114.0	2114.54	1	92.0	70.4%	2	K.LLHEDVKIREILHKELK.Q	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.840.840.2	51.8472	0.47001	2710.25	2711.23	1	9.0	73.1%	1	K.LLHEDVKIREILHKELKQAAVAR.I	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.939.939.3	77.5703	0.621683	2710.61	2711.23	1	214.0	79.0%	2	K.LLHEDVKIREILHKELKQAAVAR.I	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.761.761.3	45.2027	0.399872	1876.16	1876.26	1	98.0	60.7%	1	K.IREILHKELKQAAVAR.I	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.324.324.2	47.8594	0.413929	1120.29	1120.38	1	149.0	81.2%	2	R.IVIERPHKK.C	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.284.284.3	34.6943	0.226821	1120.43	1120.38	1	216.0	75.0%	1	R.IVIERPHKK.C	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.629.629.2	46.3329	0.0637733	1433.89	1434.73	1	64.0	68.0%	1	R.VTIHSARPGVVIGK.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.752.752.3	36.3031	0.192821	1435.28	1434.73	1	26.0	52.9%	1	R.VTIHSARPGVVIGK.K	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.562.562.2	56.5954	0.493551	1560.85	1562.9	1	14.0	66.7%	2	R.VTIHSARPGVVIGKK.G	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1404.1404.3	46.4302	0.515102	4195.16	4193.83	1	181.0	65.4%	1	R.KKVADITSSDVVINIVEIRKPELDATLVAESIAQQLER.R	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1451.1451.3	37.2075	0.344801	4067.66	4065.66	1	138.0	48.9%	1	K.KVADITSSDVVINIVEIRKPELDATLVAESIAQQLER.R	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1506.1506.3	54.6052	0.57798	3937.85	3937.48	1	229.0	65.2%	1	K.VADITSSDVVINIVEIRKPELDATLVAESIAQQLER.R	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.482.482.2	36.4428	0.33178	1178.49	1178.38	1	51.0	63.2%	2	R.EGRVPLHTLR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.906.906.2	37.0409	0.337489	2312.63	2313.69	1	160.0	69.2%	1	K.VWIFKGEILEHDPMAQDKR.M	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1015.1015.3	46.5959	0.231842	2314.37	2313.69	1	80.0	64.3%	1	K.VWIFKGEILEHDPMAQDKR.M	3

RPA3129

56.4%

6367

10.1

RPL33 50S ribosomal protein L33 3537789:3537956 forward MW:6366

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.827.827.1	38.2833	0.527533	1564.77	1565.76	1	153.0	71.4%	1	K.LVSTADTGFYYVTK.K	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.840.840.2	54.465	0.529244	1693.59	1693.94	1	112.0	72.0%	2	K.LVSTADTGFYYVTKK.N	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.742.742.1	25.5933	0.0956305	1694.17	1693.94	1	96.0	56.5%	1	K.LVSTADTGFYYVTKK.N	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.997.997.3	36.394	0.260422	1695.62	1693.94	1	151.0	57.4%	1	K.LVSTADTGFYYVTKK.N	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.555.555.2	62.5268	0.361722	1912.17	1912.33	1	201.0	67.9%	1	R.TMTDKMVKKKYDPVAR.K	2

RPA0038

51.3%

119

13301

11.5

rplT ribosomal protein L20 45426:45785 reverse MW:13300

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.1473.1473.3	35.1783	0.183224	3056.21	3054.63	1	100.0	58.1%	1	R.ALWIQRLNAAVRPFGMTYSVFINGLSK.S	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1252.1252.2	70.976	0.460333	2286.13	2286.7	1	113.0	80.0%	3	R.LNAAVRPFGMTYSVFINGLSK.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1300.1300.3	55.7717	0.431905	2286.92	2286.7	1	159.0	61.2%	2	R.LNAAVRPFGMTYSVFINGLSK.S	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1354.1354.3	50.5962	0.480991	3452.78	3453.02	1	150.0	61.4%	2	K.SGIVVDRKVLSDLAINEPAAFQAIAEKAKAALAA.-	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1136.1136.2	76.8211	0.632941	2129.57	2129.46	1	204.0	84.8%	1	R.KVLSDLAINEPAAFQAIAEK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1349.1349.2	36.6626	0.222529	2725.13	2726.19	1	34.0	59.4%	1	R.KVLSDLAINEPAAFQAIAEKAKAALAA.-	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1172.1172.2	83.9727	0.627473	2001.87	2001.29	1	206.0	84.4%	3	K.VLSDLAINEPAAFQAIAEK.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1070.1070.2	45.9093	0.473098	2200.93	2200.54	1	162.0	57.6%	2	K.VLSDLAINEPAAFQAIAEKAK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1415.1415.2	57.7343	0.496473	2597.57	2598.02	1	130.0	75.0%	2	K.VLSDLAINEPAAFQAIAEKAKAALAA.-	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1414.1414.3	35.4558	0.179418	2599.22	2598.02	1	220.0	55.6%	1	K.VLSDLAINEPAAFQAIAEKAKAALAA.-	3

RPA3269

51.2%

125

12844

5.1

rplL 50S ribosomal protein L7/L12 3687607:3687984 reverse MW:12843

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1559.1559.2	103.307	0.67408	2443.75	2443.8	1	188.0	96.8%	8	M.ADLQKIVDDLSSLTVLEAAELAK.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1674.1674.3	53.3009	0.23081	2443.79	2443.8	1	220.0	65.2%	5	M.ADLQKIVDDLSSLTVLEAAELAK.L	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1817.1817.3	67.7451	0.557121	3055.52	3056.52	1	103.0	67.9%	4	M.ADLQKIVDDLSSLTVLEAAELAKLLEEK.W	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1799.1799.2	68.3841	0.596339	3055.55	3056.52	1	131.0	80.0%	3	M.ADLQKIVDDLSSLTVLEAAELAKLLEEK.W	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1274.1274.1	47.4108	0.492377	1887.83	1888.17	1	164.0	75.0%	1	K.IVDDLSSLTVLEAAELAK.L	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1329.1329.2	83.8	0.589031	1888.31	1888.17	1	215.0	86.7%	8	K.IVDDLSSLTVLEAAELAK.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1279.1279.3	67.421	0.482304	1888.49	1888.17	1	253.0	69.1%	3	K.IVDDLSSLTVLEAAELAK.L	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1484.1484.2	69.2485	0.603344	2500.57	2500.89	1	181.0	81.2%	3	K.IVDDLSSLTVLEAAELAKLLEEK.W	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1604.1604.3	53.4277	0.476464	2500.73	2500.89	1	85.0	61.2%	3	K.IVDDLSSLTVLEAAELAKLLEEK.W	3
4	Prep4_Anaer_Gradient_1st_052703_PPM.314.314.1	35.0989	0.0657599	631.47	631.747	1	162.0	100.0%	1	K.LLEEK.W	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.702.702.3	41.7549	0.331207	2510.33	2508.88	1	170.0	58.0%	1	K.DLVEGAPKPLKEGVNKEEAEKVK.A	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.844.844.3	56.6606	0.529606	3078.56	3078.54	1	177.0	68.0%	3	K.DLVEGAPKPLKEGVNKEEAEKVKAQLEK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.740.740.2	44.2681	0.456796	3079.05	3078.54	1	1.0	66.7%	1	K.DLVEGAPKPLKEGVNKEEAEKVKAQLEK.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.879.879.3	43.4745	0.384796	3875.12	3875.5	1	128.0	61.8%	1	K.DLVEGAPKPLKEGVNKEEAEKVKAQLEKAGAKVELK.-	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.534.534.2	74.1509	0.43973	1385.79	1385.65	1	240.0	100.0%	5	K.AQLEKAGAKVELK.-	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.649.649.3	48.0064	0.326052	1386.05	1385.65	1	208.0	69.6%	3	K.AQLEKAGAKVELK.-	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.282.282.2	53.8891	0.266516	815.972	815.989	1	199.0	100.0%	2	K.AGAKVELK.-	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.284.284.1	35.4401	0.145101	816.28	815.989	1	230.0	83.3%	1	K.AGAKVELK.-	1

RPA3080

50.8%

195

21179

5.1

RPL9 putative 50S ribosomal protein L9, cultivar specific nodulation protein Csn1 3484599:3485186 forward MW:21179

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1136.1136.2	54.9936	0.252853	1002.45	1003.25	1	249.0	86.7%	1	-.MEVILLER.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.798.798.2	50.8767	0.300755	1301.31	1301.6	1	198.0	76.2%	1	R.VAKLGQMGELVR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.952.952.3	49.5037	0.454265	1301.87	1301.6	1	205.0	68.4%	1	R.VAKLGQMGELVR.V	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.910.910.2	56.5165	0.415548	1003.05	1003.21	1	204.0	88.2%	1	K.LGQMGELVR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.966.966.2	38.725	0.160408	760.352	759.927	1	217.0	90.9%	3	R.NFLLPR.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.591.591.3	62.1965	0.479987	2205.74	2205.46	1	255.0	59.3%	2	R.ATAANREKYEHMKADLEAR.N	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.820.820.2	77.3233	0.531328	2539.65	2538.95	1	174.0	81.2%	1	R.NIAAKAEATKVAEKIDGQNVVVIR.Q	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.932.932.3	64.45	0.452745	2540.66	2538.95	1	58.0	70.1%	2	R.NIAAKAEATKVAEKIDGQNVVVIR.Q	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.970.970.3	56.7629	0.463137	2042.0	2041.36	1	252.0	61.3%	1	K.AEATKVAEKIDGQNVVVIR.Q	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1436.1436.3	40.7864	0.407773	3137.72	3138.47	1	244.0	54.4%	2	R.QASEGGQLFGSVSVRDIIASFDGQGVKIDR.S	3

RPA0159

48.9%

9581

11.0

rpmA, L27 ribosomal protein L27 177918:178190 forward MW:9581

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.804.804.1	44.9661	0.417152	1550.98	1551.79	1	143.0	73.9%	2	K.AFGGEHVIPGNIIAR.Q	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.909.909.2	52.5984	0.424024	1552.53	1551.79	1	242.0	70.4%	2	K.AFGGEHVIPGNIIAR.Q	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.894.894.2	62.666	0.604325	2269.27	2268.56	1	158.0	77.4%	1	R.GTQWHPGLNVGMGTDHTLFAK.V	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1006.1006.3	53.4606	0.403651	2269.43	2268.56	1	143.0	70.1%	2	R.GTQWHPGLNVGMGTDHTLFAK.V	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.916.916.2	41.2679	0.406624	2710.25	2710.05	1	144.0	60.0%	1	R.GTQWHPGLNVGMGTDHTLFAKVEGR.V	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.431.431.2	32.6722	0.0792662	992.432	992.123	1	81.0	66.7%	1	K.VEGRVEFR.A	2

RPA0039

48.5%

7547

11.9

rpmI 50S ribosomal protein L35 45869:46069 reverse MW:7547

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.308.308.1	34.7339	0.378627	851.52	852.022	1	156.0	84.6%	2	R.FKVTATGK.V	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.243.243.2	35.5916	0.323807	744.092	741.936	1	34.0	83.3%	1	R.HGMIKR.T	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.476.476.1	27.6523	0.170243	1349.82	1350.56	1	202.0	68.4%	1	R.AIFKTDGDNIKK.Y	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.607.607.2	42.3475	0.338707	1350.35	1350.56	1	142.0	63.2%	1	R.AIFKTDGDNIKK.Y	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.614.614.3	52.8953	0.391003	1350.77	1350.56	1	149.0	65.9%	3	R.AIFKTDGDNIKK.Y	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1054.1054.2	64.3977	0.563064	2055.89	2056.37	1	70.0	84.6%	2	R.AIFKTDGDNIKKYFLPNA.-	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1219.1219.3	41.1662	0.309062	2056.1	2056.37	1	235.0	58.2%	1	R.AIFKTDGDNIKKYFLPNA.-	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.915.915.1	25.9603	0.321241	724.52	724.834	1	204.0	80.0%	1	K.YFLPNA.-	1

RPA3247

46.8%

278

30644

10.8

rplB 50S ribosomal protein L2 3656986:3657822 reverse MW:30644

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.544.544.1	41.4697	0.465482	1430.83	1431.64	1	32.0	80.0%	1	M.ALKTFNPTTPGQR.Q	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.638.638.3	38.3396	0.11762	1431.83	1431.64	1	59.0	60.9%	1	M.ALKTFNPTTPGQR.Q	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.624.624.2	53.3106	0.458749	1433.43	1431.64	1	236.0	69.6%	2	M.ALKTFNPTTPGQR.Q	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.250.250.2	41.4413	0.425211	1277.25	1277.43	1	16.0	70.0%	2	R.FRGGGHKQAYR.L	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.382.382.2	34.8154	0.199038	778.032	777.942	1	138.0	83.3%	1	R.LVDFKR.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.415.415.3	51.5173	0.444218	1243.4	1242.46	1	239.0	70.3%	1	R.TKVDVPAKVER.L	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1243.1243.3	47.6797	0.345638	3402.05	3399.83	1	20.0	62.2%	2	R.LEYDPNRTAFIALIKYEDGEQAYILAPQR.L	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.269.269.2	49.1982	0.32229	899.772	900.07	1	140.0	82.4%	1	K.IGKGGQLAR.S	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.941.941.2	35.5076	0.26111	2134.59	2135.39	1	216.0	46.7%	2	R.SAGTYAQIVGRDHDYVILR.M	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.940.940.3	46.6547	0.374895	2136.29	2135.39	1	211.0	60.0%	3	R.SAGTYAQIVGRDHDYVILR.M	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.330.330.3	44.6527	0.39201	2020.31	2020.35	1	172.0	55.7%	1	R.TSGGRHPVTPWGKPTKGKK.T	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.619.619.1	43.6409	0.321916	1508.87	1509.75	1	150.0	89.5%	1	R.SNKSTDKFILISR.H	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.709.709.2	68.5142	0.532152	1509.55	1509.75	1	216.0	87.0%	3	R.SNKSTDKFILISR.H	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.854.854.3	55.2979	0.444974	1510.76	1509.75	1	247.0	75.0%	3	R.SNKSTDKFILISR.H	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.695.695.1	39.7489	0.296831	1179.79	1180.39	1	145.0	86.7%	1	K.STDKFILISR.H	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.942.942.2	51.6293	0.380921	1180.27	1180.39	1	228.0	78.9%	1	K.STDKFILISR.H	2

RPA3245

44.9%

127

13957

10.7

rplV 50S ribosomal protein L22 3656302:3656685 reverse MW:13957

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.513.513.1	50.178	0.488021	1270.65	1271.42	1	165.0	94.4%	2	R.SLPDNEAKAVAR.M	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.624.624.2	57.9548	0.487847	1271.33	1271.42	1	31.0	81.8%	6	R.SLPDNEAKAVAR.M	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1159.1159.2	66.5956	0.52097	1980.05	1980.47	1	16.0	76.9%	3	R.MLRVSPQKLNLVAQLIR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1324.1324.3	53.1685	0.386936	1980.32	1980.47	1	250.0	67.3%	3	R.MLRVSPQKLNLVAQLIR.G	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1077.1077.2	65.2758	0.543742	1579.69	1579.93	1	97.0	80.0%	3	R.VSPQKLNLVAQLIR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1274.1274.3	54.8707	0.428044	1579.73	1579.93	1	86.0	70.8%	3	R.VSPQKLNLVAQLIR.G	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1336.1336.2	49.2576	0.430118	1040.65	1040.3	1	229.0	82.4%	1	K.LNLVAQLIR.G	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.821.821.2	61.1843	0.60222	1534.93	1534.76	1	193.0	76.9%	1	R.GRKASAALADLAFSR.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.975.975.3	43.5459	0.428118	1535.45	1534.76	1	255.0	62.5%	2	R.GRKASAALADLAFSR.K	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.870.870.2	79.7669	0.600167	1321.67	1321.52	1	254.0	91.7%	3	R.KASAALADLAFSR.K	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.774.774.1	46.8981	0.460162	1322.31	1321.52	1	168.0	85.0%	1	R.KASAALADLAFSR.K	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1139.1139.2	59.0905	0.558112	1193.79	1193.35	1	233.0	77.3%	3	K.ASAALADLAFSR.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1150.1150.2	65.4373	0.530537	1532.35	1532.91	1	131.0	86.4%	2	R.IFKPFAQLTIVVR.Q	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.1356.1356.3	59.2263	0.469864	1534.55	1532.91	1	191.0	81.6%	2	R.IFKPFAQLTIVVR.Q	3

RPA0064

43.2%

565

62801

5.4

rpsA ribosomal protein S1 70316:72013 forward MW:62801

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1157.1157.3	50.4092	0.392825	3737.84	3738.04	1	201.0	64.8%	2	M.ASTDTYNPTRDDFAAMLDESFAGGNLQESSVIKGK.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1708.1708.2	36.8893	0.327976	2502.75	2503.82	1	17.0	50.0%	1	K.VGDTVEVFLDRIENALGEAVLSR.D	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1804.1804.3	57.9976	0.48697	2504.09	2503.82	1	174.0	66.7%	2	K.VGDTVEVFLDRIENALGEAVLSR.D	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1627.1627.3	35.6009	0.231466	2974.07	2974.35	1	153.0	56.9%	1	K.VGDTVEVFLDRIENALGEAVLSRDKAR.R	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.495.495.2	52.4502	0.444118	1261.93	1262.41	1	82.0	93.8%	2	R.REESWGKLEK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.423.423.3	41.6972	0.175302	1263.68	1262.41	1	232.0	70.6%	1	R.REESWGKLEK.A	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1089.1089.2	36.7284	0.351978	2880.75	2881.37	1	0.0	59.3%	3	R.SQVDIRPIRDVAPLMNNSQPFQILK.M	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1205.1205.3	45.6926	0.377135	2881.25	2881.37	1	132.0	59.4%	1	R.SQVDIRPIRDVAPLMNNSQPFQILK.M	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1100.1100.3	37.177	0.338838	3283.28	3283.85	1	1.0	67.6%	1	R.SQVDIRPIRDVAPLMNNSQPFQILKMDR.R	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.726.726.2	33.1734	0.340224	1793.63	1793.08	1	0.0	57.1%	1	R.RVNHPTEVLTIGQTVK.V	3 2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1439.1439.3	41.6613	0.401416	3928.85	3927.47	1	225.0	60.0%	1	R.FTGRVTNITDYGAFVELEPGIEGLIHVSEMSWTKK.N	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1479.1479.3	50.051	0.441534	3467.63	3465.95	1	194.0	65.4%	2	R.VTNITDYGAFVELEPGIEGLIHVSEMSWTKK.N	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.969.969.3	41.5036	0.378719	3066.41	3066.51	1	155.0	56.3%	1	K.NMHPGKIVSTSQEVEVQVLEVDSVKRR.I	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1081.1081.2	31.7296	0.192826	2098.59	2100.38	1	232.0	35.3%	1	R.ISLGVKQLEGDPFAEPGDVK.K	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.391.391.2	41.9632	0.351889	878.372	878.06	1	240.0	76.9%	1	R.VIQFDKK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.330.330.1	32.1655	0.147434	801.67	802.005	1	225.0	75.0%	1	R.KVQVSIK.A	1
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1226.1226.2	42.7685	0.496863	3208.85	3209.53	1	198.0	54.8%	1	K.ALEVAEEKEAIAQYGSSDSGATLGDILGTALK.Q	2

RPA3228

35.2%

128

14446

10.8

rpsM 30S ribosomal protein S13 3647032:3647418 reverse MW:14446

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.1094.1094.2	76.3677	0.576045	1554.49	1553.89	1	205.0	84.0%	2	R.VLIALQYIHGIGQK.N	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1183.1183.2	85.0672	0.634338	2408.17	2408.85	1	242.0	86.7%	3	R.VLIALQYIHGIGQKNAADILEK.V	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1180.1180.3	69.0377	0.389936	2408.63	2408.85	1	226.0	75.0%	3	R.VLIALQYIHGIGQKNAADILEK.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1300.1300.3	66.2591	0.57636	3230.51	3230.87	1	93.0	68.8%	2	R.VLIALQYIHGIGQKNAADILEKVKIPLDR.R	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1229.1229.3	40.3024	0.206898	1696.85	1696.0	1	76.0	64.0%	1	K.NAADILEKVKIPLDR.R	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.849.849.1	28.3388	0.0968601	970.51	971.188	1	148.0	76.9%	1	R.LMDLGCYR.G	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.1012.1012.2	43.0717	0.310733	970.792	971.188	1	214.0	73.3%	1	R.LMDLGCYR.G	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.315.315.2	31.6754	0.142991	883.052	883.042	1	20.0	76.9%	1	R.GLPVRGQR.T	2

RPA3227

32.6%

129

13878

11.3

rpsK 30S ribosomal protein S11 3646512:3646901 reverse MW:13877

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.720.720.2	80.9937	0.571953	1649.37	1649.84	1	178.0	95.8%	1	R.KSTPYAAQVAAEDVAK.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.827.827.3	79.094	0.559578	2587.85	2587.92	1	187.0	72.2%	3	R.KSTPYAAQVAAEDVAKKAQEHGMR.T	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.729.729.2	76.376	0.649595	2588.65	2587.92	1	191.0	83.9%	3	R.KSTPYAAQVAAEDVAKKAQEHGMR.T	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.712.712.1	35.9176	0.463722	1520.9	1521.67	1	57.0	58.3%	1	K.STPYAAQVAAEDVAK.K	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.811.811.2	44.2705	0.378153	1523.13	1521.67	1	1.0	70.4%	1	K.STPYAAQVAAEDVAK.K	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.884.884.2	70.4818	0.490791	2459.67	2459.75	1	250.0	71.9%	2	K.STPYAAQVAAEDVAKKAQEHGMR.T	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.885.885.3	47.4602	0.270515	2459.93	2459.75	1	115.0	64.3%	3	K.STPYAAQVAAEDVAKKAQEHGMR.T	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.785.785.2	55.1661	0.486919	1828.43	1829.02	1	0.0	71.0%	3	R.TLEVEVAGPGSGRESALR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.940.940.3	37.4993	0.295624	1828.73	1829.02	1	109.0	50.0%	2	R.TLEVEVAGPGSGRESALR.A	3

RPA0158

31.0%

126

13491

10.2

rplU, L21 putative ribosomal protein L21 177448:177828 forward MW:13490

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.762.762.1	37.6443	0.148995	708.55	708.942	1	224.0	100.0%	3	-.MFAVIK.T	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.905.905.2	41.5567	0.241304	708.792	708.942	1	208.0	91.7%	3	-.MFAVIK.T	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.554.554.1	34.0852	0.227275	577.38	577.745	1	125.0	100.0%	1	K.VIAFK.K	1
*	Prep4_Anaer_Gradient_2nd_052703_PPM.607.607.2	30.6439	0.161249	1508.99	1506.75	1	18.0	50.0%	1	R.KRGYRDEITVLR.I	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.664.664.2	64.9825	0.58977	1681.71	1681.97	1	220.0	81.5%	3	R.ITEILADGKKPSVGPR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.581.581.1	34.5578	0.284781	1681.99	1681.97	1	192.0	62.5%	1	R.ITEILADGKKPSVGPR.A	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.809.809.3	51.3079	0.471863	1682.99	1681.97	1	216.0	62.7%	3	R.ITEILADGKKPSVGPR.A	3

RPA4230

27.7%

10163

11.3

RPA4230 conserved unknown protein 4772098:4772382 forward MW:10163

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.489.489.2	30.8547	0.238217	1550.99	1552.77	1	1.0	59.1%	1	R.REYTKEDIKELK.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.437.437.2	42.2099	0.394971	1820.19	1820.05	1	16.0	64.0%	1	R.EYTKEDIKELKAHSK.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.547.547.2	59.3986	0.452293	1084.31	1084.26	1	171.0	88.2%	3	K.ARTPVAEIAR.L	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.496.496.1	34.21	0.369398	856.76	856.998	1	35.0	91.7%	3	R.TPVAEIAR.L	1
*	Prep4_Anaer_Gradient_Full_052703_PPM.503.503.2	52.671	0.445019	857.492	856.998	1	233.0	86.7%	3	R.TPVAEIAR.L	2

RPA0176

25.6%

476

50717

5.2

atpD putative H+-transporting ATP synthase beta chain. 194774:196204 reverse MW:50717

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1396.1396.2	59.0205	0.509284	2443.33	2440.89	1	172.0	69.7%	1	K.IGLFGGAGVGKTVLIQELINNVAR.A	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1690.1690.3	44.7721	0.35697	3197.03	3195.61	1	119.0	63.0%	1	R.VGLTGLTVAEHFRDQGQDVLFFVDNIFR.F	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1092.1092.3	42.537	0.306608	2021.93	2020.25	1	26.0	53.6%	1	R.AISEKGIYPAVDPLDSTSR.M	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.1505.1505.2	63.3315	0.584032	2662.67	2661.05	1	155.0	76.7%	1	K.SLQDIIAILGMDELSEEDKLTVAR.A	2
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1481.1481.2	33.0071	0.354342	2960.69	2962.42	1	168.0	50.0%	1	R.FLSQPFFVAEVFTGSPGKFVDLADTIK.G	2

RPA4176

23.0%

10064

11.2

rpsU, S21 ribosomal protein S21 4721053:4721316 forward MW:10064

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1012.1012.2	49.1176	0.421857	2055.89	2056.44	1	73.0	66.7%	1	-.MQVLVRDNNVDQALKALK.K	2
*	Prep4_Anaer_Gradient_2nd_052703_PPM.881.881.3	69.9348	0.48	2312.63	2312.79	1	165.0	73.0%	1	-.MQVLVRDNNVDQALKALKKK.M	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.775.775.2	44.9323	0.340468	2312.63	2312.79	1	128.0	65.5%	1	-.MQVLVRDNNVDQALKALKKK.M	2

RPA0185

16.9%

467

48585

7.1

dldH dihydrolipoamide dehydrogenase, E3 component of 2-oxoglutarate and pyruvate dehydrogenase complexes 205473:206876 reverse MW:48585

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_1st_052703_PPM.1241.1241.3	76.0483	0.642085	1958.78	1958.18	1	236.0	75.0%	2	K.ALLHASELFEEAGHSFAK.M	3
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1694.1694.3	61.4039	0.536798	3148.85	3147.67	1	211.0	76.0%	1	R.LGAEVTVVEFLDRILPGMDGEVVKQFQR.I	3
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1476.1476.3	45.5858	0.46054	3482.87	3480.01	1	159.0	57.1%	1	R.VLGVHIIGREAGEMIHEAAVLMEFGGSAEDLAR.T	3

RPA0040

16.1%

192

21923

9.3

infC translation initiation factor IF-3 46403:46981 reverse MW:21922

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1066.1066.2	57.1523	0.53994	2280.61	2280.71	1	220.0	61.8%	1	K.MAMDAGMDLVEISPTSSPPVCK.I	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.549.549.2	40.1957	0.271074	1099.13	1099.23	1	149.0	68.8%	1	R.FFEEGDKVK.I	2

RPA0188

14.1%

417

43864

6.3

sucB dihydrolipoamide succinyl transferase 208123:209376 reverse MW:43864

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.1257.1257.2	66.1956	0.670894	2941.81	2942.45	1	187.0	78.6%	1	R.LKEVQNTAAMLTTFNEVDMTNVMALR.A	2
*	Prep4_Anaer_Gradient_1st_052703_PPM.357.357.3	35.9854	0.339063	1649.69	1649.89	1	170.0	58.5%	1	R.AQYKDVFEKKHGAK.L	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.1442.1442.2	46.6468	0.556951	1047.73	1048.29	1	232.0	81.2%	1	K.LGFMGFFTK.A	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.355.355.2	51.2015	0.416138	1146.17	1144.27	1	196.0	73.7%	2	R.VKESLEDPAR.L	2

RPA0178

8.2%

510

55177

6.5

atpA putative H+-transporting ATP synthase alpha chain. 197295:198827 reverse MW:55178

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.1404.1404.3	61.5097	0.546507	3744.02	3744.2	1	173.0	66.3%	1	R.AAEISAILKDQIKNFGQEAEVSEVGQVLSVGDGIAR.V	3
*	Prep4_Anaer_Gradient_Full_052703_PPM.262.262.1	27.5469	0.0718048	744.48	744.913	1	200.0	80.0%	1	R.KRVDVK.A	1

RPA0189

5.0%

985

111338

6.6

sucA putative alpha-ketoglutarate dehydrogenase (E1 subunit) 209481:212438 reverse MW:111339

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_Full_052703_PPM.1549.1549.3	41.0933	0.434355	3452.75	3451.05	1	204.0	54.5%	1	R.ISVLPLLMHGDAAFAGQGVVAECFALSDLKGYR.T	3
*	Prep4_Anaer_Gradient_1st_052703_PPM.971.971.3	38.2018	0.0328178	1826.72	1829.02	1	9.0	59.3%	1	R.AISRLEELGPDTSFHR.V	3

gi|15223937|ref|NP_177865.1|

4.6%

410

47539

9.5

hypothetical protein [Arabidopsis thaliana]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_2nd_052703_PPM.1104.1104.2	32.1307	0.0388974	2023.89	2026.36	1	8.0	41.4%	1	R.AAEARDLVVEMVEAGLVPR.E	2
*	Prep4_Anaer_Gradient_Full_052703_PPM.1079.1079.3	34.5551	0.144604	2024.54	2026.36	1	70.0	30.5%	1	R.AAEARDLVVEMVEAGLVPR.E	3

gi|15227137|ref|NP_182304.1|

2.1%

483

52311

7.4

unknown protein [Arabidopsis thaliana]

	Filename	XCorr	DeltCN	ObsM+H+	CalcM+H+	SpR	SpScore	Ion%	#	Sequence
*	Prep4_Anaer_Gradient_3rd_052703_PPM.567.567.1	38.7169	0.250764	1114.46	1115.32	1	208.0	86.7%	1	R.QTILQVEGVK.G	1
*	Prep4_Anaer_Gradient_1st_052703_PPM.795.795.2	31.8273	0.104561	1115.77	1115.32	1	128.0	61.1%	2	R.QTILQVEGVK.G	2

	Proteins	Peptide IDs	Copies
Unfiltered	5776	8237	23048
Redundant	61	882	1688
Nonredundant	61	882	1688

/auto/gtl/misc/Chandra/bradRibo/run1D/dbdigger/arabiU/tryptic/simpleB2