proteins
| 6 proteins |
S | COG3859 | Predicted membrane protein | Help | |
|---|---|---|---|---|---|
| 1 from | query genome Streptococcus pyogenes M1 GAS (Lactobacillales | Bacilli) | ||||
| SPy0600 | ||||
187 letters (r) 0
0 774 = ||| 1 SPy0600 (187) = -1
-1 287 = || 2 lin1468 (186) = 10
-48
BLASTP 2.2.4 [Aug-26-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= SPy0600
(187 letters)
Database: myva
192,987 sequences; 59,019,183 total letters
Score E
Sequences producing significant alignments: (bits) Value
SPy0600 302 3e-82
lin1468 115 7e-26
L116212 106 2e-23
BH0830 70 3e-12
BS_yuaJ 63 4e-10
CAC2928 49 7e-06
ML0848 31 1.3
PAE0041 31 1.8
SMc02265_2 28 9.6
# >SPy0600
# Length = 187
#
# Score = 302 bits (774), Expect = 3e-82
# Identities = 187/187 (100%), Positives = 187/187 (100%)
#
# Query: 1 MSPNTNVKYLIEAAIFAALAMTLSFIPDFAGWFSPSYGAIALVIFSLRRGLKYGMLAGLI 60
# MSPNTNVKYLIEAAIFAALAMTLSFIPDFAGWFSPSYGAIALVIFSLRRGLKYGMLAGLI
# Sbjct: 1 MSPNTNVKYLIEAAIFAALAMTLSFIPDFAGWFSPSYGAIALVIFSLRRGLKYGMLAGLI 60
#
# Query: 61 WGLLHFVLGKVYYLSMSQVFIEYILAFTSMGLAGSFSDSLIKTLRRQQTFFAVFLAIMAS 120
# WGLLHFVLGKVYYLSMSQVFIEYILAFTSMGLAGSFSDSLIKTLRRQQTFFAVFLAIMAS
# Sbjct: 61 WGLLHFVLGKVYYLSMSQVFIEYILAFTSMGLAGSFSDSLIKTLRRQQTFFAVFLAIMAS 120
#
# Query: 121 LLAVTVRYLWHFLAGIIFWGSYAPKGMSAVWYSFSVNGTAGVLTFLITCLALMIALPIHP 180
# LLAVTVRYLWHFLAGIIFWGSYAPKGMSAVWYSFSVNGTAGVLTFLITCLALMIALPIHP
# Sbjct: 121 LLAVTVRYLWHFLAGIIFWGSYAPKGMSAVWYSFSVNGTAGVLTFLITCLALMIALPIHP 180
#
# Query: 181 QLFDPKD 187
# QLFDPKD
# Sbjct: 181 QLFDPKD 187
#
#
# >lin1468
# Length = 186
#
# Score = 115 bits (287), Expect = 7e-26
# Identities = 77/184 (41%), Positives = 108/184 (57%), Gaps = 1/184 (0%)
#
# Query: 4 NTNVKYLIEAAIFAALAMTLSFIP-DFAGWFSPSYGAIALVIFSLRRGLKYGMLAGLIWG 62
# N + L+E AIFAA+AM LSFIP D FS S G I + + ++RRG AGL+WG
# Sbjct: 3 NKRLIILLECAIFAAVAMVLSFIPLDIGSSFSISLGMIPMYVIAIRRGFWAAGFAGLLWG 62
#
# Query: 63 LLHFVLGKVYYLSMSQVFIEYILAFTSMGLAGSFSDSLIKTLRRQQTFFAVFLAIMASLL 122
# LLHF+ GK Y L SQ IEYILAF+ + +G FS + L Q A+ A ++
# Sbjct: 63 LLHFLTGKAYILMPSQAIIEYILAFSFIAFSGVFSKQVRSNLAANQLKKAIEWAWGTMII 122
#
# Query: 123 AVTVRYLWHFLAGIIFWGSYAPKGMSAVWYSFSVNGTAGVLTFLITCLALMIALPIHPQL 182
# RY WH++AG++FWG+YA +G A +S +NG + + T ++ + + I L P+L
# Sbjct: 123 GGVARYFWHYVAGVLFWGAYAFQGWGAQLFSAVMNGASCLGTVVVCGIVISILLKTTPKL 182
#
# Query: 183 FDPK 186
# F PK
# Sbjct: 183 FLPK 186
#
#
# >L116212
# Length = 191
#
# Score = 106 bits (265), Expect = 2e-23
# Identities = 72/179 (40%), Positives = 107/179 (59%), Gaps = 9/179 (5%)
#
# Query: 6 NVKYLIEAAIFAALAMTLSFIPDFA-GWFSPSYGAIALVIFSLRRGLKYGMLAGLIWGLL 64
# NV+ L E A AALA +S IP+ GW I ++I S RRGL G++ GLIWG+L
# Sbjct: 16 NVRLLTEIAFMAALAFIISLIPNTVYGWIIVEIACIPILILSFRRGLTAGLVGGLIWGIL 75
#
# Query: 65 HFVLGKVYYLSMSQVFIEYILAFTSMGLAGSFSDSLIKTLRRQQTFFAVFLAIMASLLAV 124
# + G Y L++SQ F+EY++A S+G+AG F R++ + ++ + +AV
# Sbjct: 76 SMITGHAYILTLSQAFLEYLIAPVSLGIAGLF--------RQKTASLKLVPVLLGTFVAV 127
#
# Query: 125 TVRYLWHFLAGIIFWGSYAPKGMSAVWYSFSVNGTAGVLTFLITCLALMIALPIHPQLF 183
# ++Y +HF+AGIIFW YA KG AV YS +VNG + +LT + + L+I + P+LF
# Sbjct: 128 LLKYFFHFIAGIIFWSQYAWKGWGAVAYSLAVNGISAILTAIAAFVILIIFVKKFPKLF 186
#
#
# >BH0830
# Length = 186
#
# Score = 69.7 bits (169), Expect = 3e-12
# Identities = 62/180 (34%), Positives = 96/180 (52%), Gaps = 10/180 (5%)
#
# Query: 10 LIEAAIFAALAMTLSFIPDFAGWF---SPSYGAIALVIFSLRRGLKYGMLAGLIWGLLHF 66
# LIE AI + LA LSF+ W S S + +V+ + RRG K G++ GLI GLL
# Sbjct: 9 LIEIAIMSGLAFVLSFVKIGVFWAYGGSISLVMLPIVVMAFRRGWKAGIVTGLIVGLLKL 68
#
# Query: 67 VLGKVYYLSMSQVFIEYILAFTSMGLAGSFSDSLIKTLRRQQTFFAVFLAIMASLLAVTV 126
# + G Y + Q+ ++Y L F ++GLA F+ +K + F+A + L A +
# Sbjct: 69 IGG--YVVHPVQLVLDYPLPFLTIGLASLFA---VKGSFEGKRFYAAMIG--GVLFASFL 121
#
# Query: 127 RYLWHFLAGIIFWGSYAPKGMSAVWYSFSVNGTAGVLTFLITCLALMIALPIHPQLFDPK 186
# R+L HF +GI+++G YAP+G YSF N + + LI+ + L + + Q+F PK
# Sbjct: 122 RFLCHFTSGIVWFGEYAPEGTPVALYSFVYNISYVLPEALISIIVLALFGKKYSQMFQPK 181
#
#
# >BS_yuaJ
# Length = 192
#
# Score = 62.8 bits (151), Expect = 4e-10
# Identities = 56/189 (29%), Positives = 97/189 (50%), Gaps = 10/189 (5%)
#
# Query: 1 MSPNTNVKYLIEAAIFAALAMTLSFIPDFAGWF-------SPSYGAIALVIFSLRRGLKY 53
# M+ + + LIE AI A A+ L + +G F S S I + + S R G+K
# Sbjct: 1 MNQSKQLVRLIEIAIMTAAAVILDIV---SGMFLSMPQGGSVSIMMIPIFLISFRWGVKA 57
#
# Query: 54 GMLAGLIWGLLHFVLGKVYYLSMSQVFIEYILAFTSMGLAGSFSDSLIKTLRRQQTFFAV 113
# G+ GL+ GL+ +G ++ Q+ ++YI+AF ++G++G F+ S+ K + +
# Sbjct: 58 GLTTGLLTGLVQIAIGNLFAQHPVQLLLDYIVAFAAIGISGCFASSVRKAAVSKTKGKLI 117
#
# Query: 114 FLAIMASLLAVTVRYLWHFLAGIIFWGSYAPKGMSAVWYSFSVNGTAGVLTFLITCLALM 173
# + A + +RY H ++G +F+GS+APKG YS + N T V +F+I + L
# Sbjct: 118 VSVVSAVFIGSLLRYAAHVISGAVFFGSFAPKGTPVWIYSLTYNATYMVPSFIICAIVLC 177
#
# Query: 174 IALPIHPQL 182
# + P+L
# Sbjct: 178 LLFMTAPRL 186
#
#
# >CAC2928
# Length = 210
#
# Score = 48.9 bits (115), Expect = 7e-06
# Identities = 42/158 (26%), Positives = 78/158 (48%), Gaps = 26/158 (16%)
#
# Query: 8 KYLIEAAIFAALAMTLSFIPDFAGWFSPSYGAIAL------VIFSLRRGLKYGMLAGLIW 61
# K + + + AL+ LS F + P G++ L ++ + G + G L G ++
# Sbjct: 44 KLVAQVGVVLALSTVLSL---FKIYKLPQGGSVTLGSMVPILLIAFFYGPEVGFLTGFLF 100
#
# Query: 62 GLLHFVLGKVYYLSMSQVFIEYILAFTSMGLAGSFSDSLIKTLRRQQTFFAVFLAIMASL 121
# G++ +L + Y L QV +Y L + ++G AG F + ++ ++
# Sbjct: 101 GIIDLML-EPYLLHPIQVLFDYPLPYMALGFAGYFKNK----------------KLLGTV 143
#
# Query: 122 LAVTVRYLWHFLAGIIFWGSYAPKGMSAVWYSFSVNGT 159
# AV +R+L+H ++G++F+ S APKG S + YS NG+
# Sbjct: 144 TAVFIRFLFHVISGVVFFASSAPKGQSPLIYSIVYNGS 181
#
#
# >ML0848
# Length = 724
#
# Score = 31.2 bits (69), Expect = 1.3
# Identities = 27/67 (40%), Positives = 37/67 (54%), Gaps = 7/67 (10%)
#
# Query: 116 AIMASLLAVT--VRYLWHFLAGIIFWGSYAPKGMSAVWYSFSVNGT----AGVLTFLITC 169
# +++A+L AVT V + F AG+ G+ P G+ A Y F V T AGV+ FLIT
# Sbjct: 68 SVLAALCAVTAIVSVVVPFAAGLALLGT-VPMGLLAYRYRFRVLMTAMVAAGVIAFLITG 126
#
# Query: 170 LALMIAL 176
# L IA+
# Sbjct: 127 LGGFIAV 133
#
#
# >PAE0041
# Length = 159
#
# Score = 30.8 bits (68), Expect = 1.8
# Identities = 16/38 (42%), Positives = 25/38 (65%)
#
# Query: 47 LRRGLKYGMLAGLIWGLLHFVLGKVYYLSMSQVFIEYI 84
# L GLK+G L G++ GLL +G + YL++ + F EY+
# Sbjct: 3 LSTGLKWGALVGVVIGLLQGAVGYLGYLTIKEKFTEYL 40
#
#
# >SMc02265_2
# Length = 311
#
# Score = 28.5 bits (62), Expect = 9.6
# Identities = 14/28 (50%), Positives = 18/28 (64%)
#
# Query: 110 FFAVFLAIMASLLAVTVRYLWHFLAGII 137
# F AV LA++A LL + R+ WHF G I
# Sbjct: 137 FLAVALAMLAILLYIWFRFEWHFAVGAI 164
#
#
Database: myva
Posted date: Sep 16, 2002 2:25 PM
Number of letters in database: 59,019,183
Number of sequences in database: 192,987
Lambda K H
0.331 0.143 0.447
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,486,791
Number of Sequences: 192987
Number of extensions: 799017
Number of successful extensions: 3625
Number of sequences better than 10.0: 97
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 80
Number of HSP's that attempted gapping in prelim test: 3582
Number of HSP's gapped (non-prelim): 113
length of query: 187
length of database: 59,019,183
effective HSP length: 103
effective length of query: 84
effective length of database: 39,141,522
effective search space: 3287887848
effective search space used: 3287887848
T: 11
A: 40
X1: 15 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.9 bits)
S2: 62 (28.5 bits)
S2: 62 (28.5 bits)