Finished cDNA, clone TEgg011d10 (snag1)

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UGID:458887 UniGene Str.3290 Xenopus tropicalis (western clawed frog) snag1

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Finished cDNA, clone TEgg011d10 (snag1)

SELECTED PROTEIN SIMILARITIES

Comparison of sequences in UniGene with selected protein reference sequences. The alignments can suggest function of a gene.

Reference Protein		Species	Id(%)	Len(aa)
NP_001011173.1	sorting nexin 18	X. tropicalis	100.0	584
NP_001088275.1	hypothetical protein LOC495108	X. laevis	94.7	586
NP_570614.2	sorting nexin 18	M. musculus	78.7	614
NP_001096045.1	sorting nexin 18 isoform a	H. sapiens	78.7	623
NP_001093476.1	hypothetical protein LOC562372	D. rerio	76.5	566

GENE EXPRESSION

Tissues and development stages from this gene's sequences survey gene expression. Links to other NCBI expression resources.

cDNA Sources:

whole body; testis; intestine

SEQUENCES

Sequences representing this gene; mRNAs, ESTs, and gene predictions supported by transcribed sequences.

mRNA sequences (3)

BC084999.1	Xenopus tropicalis sorting nexin associated golgi protein 1, mRNA (cDNA clone MGC:89615 IMAGE:6995236), complete cds	PA
NM_001011173.1	Xenopus tropicalis sorting nexin associated golgi protein 1 (snag1), mRNA	PA
CT485676.1	Xenopus tropicalis finished cDNA, clone TEgg011d10	PA

EST sequences (10 of 62) [Show all sequences]

BI347378.1	Clone IMAGE:4465767	whole body	3' read	P
AL628011.1	Clone TGas022g07	whole body	5' read	P
AL629901.2	Clone TGas025b10	whole body	5' read	P
AL646177.2	Clone TGas047m22	whole body	5' read	P
AL782983.2	Clone TGas073o03	whole body	5' read	PA
AL963487.2	Clone TGas136o22	whole body	5' read	P
AL964896.2	Clone TGas099c05	whole body	5' read	PM
AL969717.2	Clone TGas107m10	whole body	5' read
AL960742.2	Clone TGas122i16	whole body	3' read	PM
AL781688.2	Clone TNeu069p18	whole body	5' read	M

Key to Symbols

P Has similarity to known Proteins (after translation)
A Contains a poly-Adenylation signal
S Sequence is a Suboptimal member of this cluster
M Clone is putatively CDS-complete by MGC criteria