Submitter records for this RefSNP Cluster

NCBI Assay ID	Handle|Submitter ID	Validation Status	ss to rs Orientation /Strand	Alleles	5' Near Seq 30 bp	3' Near Seq 30 bp	Entry Date	Update Date	Build Added	Molecule Type	Freq Warning	Ancestral Allele	Success Rate
ss716035	SC_JCM|AC026977.2_182593		fwd/B	G/T	agcaatttataataaaatctcaactaaaat	gtcagtgaatgaagacctctggttaacctg	07/27/00	04/07/04	83	Genomic			unknown
ss2049739	KWOK|OVLP-000925-468047		fwd/B	G/T	agcaatttataataaaatctcaactaaaat	gtcagtgaatgaagacctctggttaacctg	10/06/00	05/16/04	87	Genomic			97 %
ss8249746	SC_SNP|NT_011651.11_1854201		rev/T	A/C	caggttaaccagaggtcttcattcactgac	attttagttgagattttattataaattgct	04/17/03	10/10/03	114	Genomic			unknown
ss18051211	CSHL-HAPMAP|CSHL-HuCC-200402.chrX.NT_011651.14_23142264		rev/T	A/C	caggttaaccagaggtcttcattcactgac	attttagttgagattttattataaattgct	02/19/04	03/04/04	120	Genomic			unknown
ss19824262	CSHL-HAPMAP|CSHL-HuDD-200402.chrX.NT_011651.14_23142264		rev/T	A/C	caggttaaccagaggtcttcattcactgac	attttagttgagattttattataaattgct	02/20/04	03/04/04	120	Genomic			unknown
ss20398013	CSHL-HAPMAP|CSHL-HuFF-200402.chrX.NT_011651.14_23142264		rev/T	A/C	caggttaaccagaggtcttcattcactgac	attttagttgagattttattataaattgct	02/21/04	03/04/04	120	Genomic			unknown
ss21059347	SSAHASNP|WGSA-200403-chrX.chrX.NT_011651.14_23142264		rev/T	A/C	caggttaaccagaggtcttcattcactgac	attttagttgagattttattataaattgct	03/19/04	03/19/04	121	Genomic			unknown
ss23834601	PERLEGEN|afd3848545		rev/T	A/C	caggttaaccagaggtcttcattcactgac	attttagttgagattttattataaattgct	08/10/04	09/13/04	123	Genomic			unknown
ss43585365	ABI|hCV2531124		rev/T	A/C	caggttaaccagaggtcttcattcactgac	attttagttgagattttattataaattgct	07/18/05	11/03/06	126	Genomic			unknown
ss61706218	SI_EXO|NT_011651.15_28428450		rev/T	A/C	caggttaaccagaggtcttcattcactgac	attttagttgagattttattataaattgct	07/11/06	08/17/06	127	Genomic			unknown
ss75065803	ILLUMINA|ILMN_Human_1M_rs545206		fwd/B	G/T	agcaatttataataaaatctcaactaaaat	gtcagtgaatgaagacctctggttaacctg	08/28/07	08/29/07	129	Genomic			unknown
ss76461246	AFFY|AFFY_6_1M_SNP_A-8322244		rev/T	A/C	gtcttcattcactgac	attttagttgagattt	08/28/07	08/30/07	129	Genomic			unknown
ss84254697	HGSV|Cor18555_SNV_20070510.chrX_104938287		rev/T	A/C	caggttaaccagaggtcttcattcactgac	attttagttgagattttattataaattgct	11/27/07	12/06/07	130	Genomic			unknown
ss86125550	HGSV|Cor18517_SNV_20070510.chrX_104938287		rev/T	A/C	caggttaaccagaggtcttcattcactgac	attttagttgagattttattataaattgct	12/06/07	12/11/07	130	Genomic			unknown

Fasta sequence   (Legend)

 TGGAAAGAGT ACTTCCTCAG AAGGTTGAGT TCAGTCCTGA GATCCTCTTC CTCATCCTAT
 GGAATAAGAA TAGACAGCAA AGCTCCTAAA CTGTGCAATC AATGACTATA AGTCCCTAAA
 GTACAGTATA TCAATGAAGG AGAATCCTAT GGCAACTAAT TATATCCAAC AGCAATTTAT
 AATAAAATCT CAACTAAAAT
 K
 GTCAGTGAAT GAAGACCTCT GGTTAACCTG GAGTCTGGGG GAATAAAAAG GGTAAACTGA
 AGATCGTTTA GTTcagtggt tcttaaggta tggtccctgg accagcggca ctggcCACTG
 TATAAAATTT TCACTGAGTG GAGTCATTAT ATTGTTGTTT CTTTTGTAac agttttattg
 agatataatt cacatactat aaaattcacc catttaaagt gcaaaatgca atggttttta
 gtatatttat acagttgtgc aatcatcacc acaatcaatt ttagaacatt tttatcactc
 caaaaggaaa ccccatatcc tttagttatc atcccccaat tctgccacac acacacccca
 actctaagca atcactaatc cactttatgt ctcagtagat ttatcagttc tggacatttt
 atataaatga aatcatataa catggtcttt tgtgactagt tcttttcaaa gttcatccat
 atgtagcatg taacaatgtt tcattgcttt tggtttacca ttcatcaatt gagggatgtt
 tgggctattt ctaccattta gctattatga ataatgcttc tatgaacagt catgtcaagt
 aactctatgt ttaatgtttt gatgaaatga cagactgtct cccacattgg ctttaccatt
 ttgcattacc aagagcaatg tatgcagggg ttccactttc tctacactat caccaacact
 tgctattttc tgttttatta ttataaccat tctagtgggt gtgaagtggt gtctcattgt
 ggttttaatt tgcaattccc tgatgactaa tgatgttgag catcttttcc tgtgcctatt
 gccgatatgt tcttcaagaa atgtctaata caaaattctt tgtcctttta aaaactgggt
 tgtcatttta ttactgaatt gtaagagctc ttcatatatt ctagatacaa gtgccttatc
 agatagacaa cttgcaaata atttctctca tactgtggat tgttttctca ctgtcttgat
 agtgaccttt gaagcacaaa agtttttatt ttaatgaagc acaatttata aatttgttgt
 tttgttgctt gtacttttgg tgccatatat aagcatccac tgtcaaatca taggtcacaa
 agctttatcc ttgttttctt ctaagcattt tatagtttta gctcttatac ttaggtgtct
 gatccatttt gagttaactt ttatataaag taaaagtcca acctcattat tttgcatgtg
 gatGGACAGT ACCATACTAT CTTGATTATT TGGTAATCCT TTACATTTTA AAGGTATTGG
 TTTGTTCTGT GCTGATCTTT TAAAAatttt tattattttt tcacatttta tttatttatt
 tttatttttt tcgataattt atttttattA ATCACAACAA TGGCACATGC ATACCAAATA
 TAGAGAAATA TACTAATAAA ATATGTAAGG GGTCTACTCT CACTGAACAT TTTCCCCAAG
 CAATATTAAC TG

GeneView

Group Label	Contig->mRNA	Gene Model (contig mRNA transcript) Color Legend
reference	NT_011651->NM_198465 function

Integrated Maps:

NCBI Resource Links

Population Diversity

	Sample Ascertainment				Genotype Detail				Alleles
ss#	Population	Individual Group	Chrom. Sample Cnt.	Source	G/G	G/T	T/T	HWP	G	T
ss2049739	HapMap-CEU	European	120	IG	0.767	0.083	0.150	0.100	0.808	0.192
	HapMap-HCB	Asian	90	IG	0.644	0.178	0.178	0.655	0.733	0.267
	HapMap-JPT	Asian	82	IG	0.976		0.024	1.000	0.976	0.024
	HapMap-YRI	Sub-Saharan African	120	IG	0.183	0.250	0.567	0.403	0.308	0.692
ss23834601	AFD_EUR_PANEL	European	44	IG	0.773	0.136	0.091	0.025	0.841	0.159
	AFD_AFR_PANEL	African American	46	IG	0.304	0.261	0.435	0.025	0.435	0.565
	AFD_CHN_PANEL	Asian	48	IG	0.708	0.167	0.125	0.020	0.792	0.208
ss43585365	AoD_African_American		90	AF					0.380	0.620
	AoD_Caucasian		92	AF					0.830	0.170
	AoD_Chinese		90	AF					0.630	0.370
	AoD_Japanese		90	AF					0.920	0.080
ss716035	TSC_42_AA		84	AF					0.550	0.450
	TSC_42_C		84	AF					0.800	0.200
	TSC_42_A		84	AF					0.900	0.100

Validation Summary:

Validation status	Marker displays Mendelian segregation	PCR results confirmed in multiple reactions	Homozygotes detected in individual genotype data
Validated by: PERLEGEN DoubleHit found by:  BCM_SSAHASNP	UNKNOWN	UNKNOWN	UNKNOWN