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Alignment last updated: 11/20/2008 16:57:05
AL591404.4 Mouse DNA sequence from clone RP23-394O9 on chromosome 11, complete sequence [htgs_phase3]
Length: 203,613 bp
AL591075.11 Mouse DNA sequence from clone RP23-159O6 on chromosome 11 Contains the 5' end of a novel gene, the C1qtnf1 gene for C1q and tumor necrosis factor related protein 1, four novel genes, the 3' end of a novel gene and a CpG island, complete sequence [htgs_phase3]
Length: 159,896 bp
Join evaluation: Alignment count: 1
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Mismatches = 0, Gaps = 0, Length = 2000 Percent identity = 100% Score = 3965 bits (2000), Expect = 0 2 BAC and 7 Fosmid bridging clones. 2 BAC and 7 Fosmid concordant clones. 0 BAC and 0 Fosmid discordant clones. AL591404.4 >201614 agctgtggttctgccacttagcagtcacgagctgtcacacaatgacttcccttacaaggg 201673 AL591075.11 >1 ............................................................ 60 AL591404.4 >201674 tctcactcagcatccttcccagacctgctgacaataaagccagatgcggaggaggggtct 201733 AL591075.11 >61 ............................................................ 120 AL591404.4 >201734 gcctgtctgcccttctcacctacaagctctccttaccagtcacagcctgcagagcacctc 201793 AL591075.11 >121 ............................................................ 180 AL591404.4 >201794 actttgtttttcagcccagcctcccacaaaccatgacttcagacgagaacagctctgcag 201853 AL591075.11 >181 ............................................................ 240 AL591404.4 >201854 tgcagagtccatgtgcccagaccccggcacgtgtgctccctccacctggatgcacatgtc 201913 AL591075.11 >241 ............................................................ 300 AL591404.4 >201914 ctctgaccacacagagccatctggaacctcctgaaagtgcatgacaactattgcttcact 201973 AL591075.11 >301 ............................................................ 360 AL591404.4 >201974 gtgcagtctccctctggccatgtgtcctcacccagtaagtcttccctcctgggggaggct 202033 AL591075.11 >361 ............................................................ 420 AL591404.4 >202034 gctactgtcccctgtccaggagtcttccaggccagcgcagactttgaaggagcaattgaa 202093 AL591075.11 >421 ............................................................ 480 AL591404.4 >202094 ggcctcagagaagaggctaaccagtgcaatggacggctaaccagtgcaatggacggtgtc 202153 AL591075.11 >481 ............................................................ 540 AL591404.4 >202154 tgttttcattctcaagacagtctagtcttgaactcaagacaatcctcctgcttcagcctc 202213 AL591075.11 >541 ............................................................ 600 AL591404.4 >202214 ctgagtgctgagctctcacatgtgttttctacaaaaggctgggaggagcaagtgaaagag 202273 AL591075.11 >601 ............................................................ 660 AL591404.4 >202274 aaggtgaatgaccacacaagcagaggctgagtgttgatatgaccccaagccaaggaaagc 202333 AL591075.11 >661 ............................................................ 720 AL591404.4 >202334 cgcgtagctgggaggacaaagactgagttctccccagagcctttaggaacagctctggga 202393 AL591075.11 >721 ............................................................ 780 AL591404.4 >202394 catcctaactttggccctgtggcaagacaatggaaccaagaattctgagtctgtgactct 202453 AL591075.11 >781 ............................................................ 840 AL591404.4 >202454 ctagacctgtgcatgaggatgtgggccacctcaggctacagtatatgccattttctatac 202513 AL591075.11 >841 ............................................................ 900 AL591404.4 >202514 cctatccctggccttcctcttttctttgctaggaaaagagcaccaagtcagctgcctttc 202573 AL591075.11 >901 ............................................................ 960 AL591404.4 >202574 cgctgatgtcctcagaccctggctgctttgtggctaagacttactatgtcttgtggctgt 202633 AL591075.11 >961 ............................................................ 1020 AL591404.4 >202634 agatgttgccaaggccacaagacaggagccttgtggtagcgaggggcaaatggacaacag 202693 AL591075.11 >1021 ............................................................ 1080 AL591404.4 >202694 ccccatagaaggaccctgaggtcattcaggagtctgcatggttgtgacagaagtaggccc 202753 AL591075.11 >1081 ............................................................ 1140 AL591404.4 >202754 acctggtctgagctgggtcagggtccttccaagccggctaagggtgctggtcccgagccc 202813 AL591075.11 >1141 ............................................................ 1200 AL591404.4 >202814 gcagacaggctctcccccacgcccaagctcagaggcaccctgcagccgctttgttcctga 202873 AL591075.11 >1201 ............................................................ 1260 AL591404.4 >202874 gccaaccttgctccagtgttacatggcaccaggtcccctttcttccccgcccctcttaca 202933 AL591075.11 >1261 ............................................................ 1320 AL591404.4 >202934 cagtgggtgttgaaaagctaactaccctcaggcataaaacatcaaggccatacctcactt 202993 AL591075.11 >1321 ............................................................ 1380 AL591404.4 >202994 tctcatgagacacactaatccatctgtcctcaccaaaggacatttctagatgaccagagg 203053 AL591075.11 >1381 ............................................................ 1440 AL591404.4 >203054 aataagcaacacagaggaagtgtttttctctgccagagctgccggcctaactgttaggaa 203113 AL591075.11 >1441 ............................................................ 1500 AL591404.4 >203114 gagcatgggcagagggcacctacctccatgggcacccttgggtctgtacagcaccctgtg 203173 AL591075.11 >1501 ............................................................ 1560 AL591404.4 >203174 gaactacagccaagatgacctgtctctctgcttccttcacgagtggcctgtgtgacaggt 203233 AL591075.11 >1561 ............................................................ 1620 AL591404.4 >203234 ggaggctcaaacaggttcaaggcggctggctcctcccctccaggatcaaggaagggcagt 203293 AL591075.11 >1621 ............................................................ 1680 AL591404.4 >203294 gcccagtgctactctcttgccaccacgcctcactcctgcagaaagggctccctactccat 203353 AL591075.11 >1681 ............................................................ 1740 AL591404.4 >203354 ccacaccagcgtggacaggcctcagatgtctactctgttctatttgaagcttgcttcctt 203413 AL591075.11 >1741 ............................................................ 1800 AL591404.4 >203414 accacacggtacagcagagcccatggccagcaccgactgctggggaagaagtaggcagat 203473 AL591075.11 >1801 ............................................................ 1860 AL591404.4 >203474 gcccaggcttcccagcagcctctgatggcagggccttagggggcacagacccgtgcacag 203533 AL591075.11 >1861 ............................................................ 1920 AL591404.4 >203534 ccacaggctaggcactgtgacgtggaatctggctcctggttttgtgcttttgccaagctc 203593 AL591075.11 >1921 ............................................................ 1980 AL591404.4 >203594 agcactgtaccaaagaattc 203613 AL591075.11 >1981 .................... 2000
Type | Point1 | Point2 | Orient1 | Orient2 | Curator | Comment | Time |
A | 203613 | 2001 | + | + | chenhc | Taxid 10090 chrom 11 Reference assembly | 2008-11-20 16:57:05.660 |
Id | Type | Date | Whodid | Comment |
4975 | ImportOldDb | 09/02/2005 14:57:00 | f_old_db | |
4976 | ReSetShortOvlp | 09/04/2008 10:31:48 | dbo | |
174868 | CreateSwitchPt | 11/20/2008 16:57:05 | chenhc | tpf_builder 1.6 Toolkit wrapper version: built Nov 19 2008 using /netopt/ncbi_tools64/c++.by-date/20081119/GCC401-Release64/lib |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
C3H-178I15 | AL591404.4 | 99.05% | pos 68921 (F-) | |||
C3H-196L2 | AL591404.4 | 99.47% | pos 161429 (R-) | |||
CH29-519I10 | AL591404.4 | 99.82% | pos 26527 (F-) | |||
RP23-148G19 | AL591404.4 | 99.18% | pos 120791 (F-) | |||
RP23-342O6 | AL591075.11 | 99.22% | pos 105411 (F-) | |||
RP24-118F19 | AL591404.4 | 99.49% | pos 3968 (F-) | |||
RP24-154N4 | AL591404.4 | 99.15% | pos 167475 (R-) | |||
RP24-215M8 | AL591404.4 | 99.36% | pos 142748 (R-) | |||
RP24-223L17 | AL591075.11 | 99.17% | pos 123105 (R+) | |||
RP24-258O14 | AL591075.11 | 100% | pos 139497 (R-) | AL591404.4 | 99.76% | pos 153421 (F+) |
RP24-267B9 | AL591075.11 | 99.63% | pos 115410 (F+) | |||
RP24-295M19 | AL591404.4 | 99.02% | pos 198306 (R+) | |||
RP24-296B4 | AL591404.4 | 99.7% | pos 162412 (F+) | |||
RP24-296G6 | AL591075.11 | 99.43% | pos 3149 (F+) | |||
RP24-350B8 | AL591075.11 | 99.59% | pos 42615 (F+) | |||
RP24-388I19 | AL591404.4 | 99.13% | pos 144834 (F+) | |||
RP24-72G18 | AL591075.11 | 99.55% | pos 145274 (R-) | AL591404.4 | 99.8% | pos 114909 (F+) |
RP24-72K6 | AL591404.4 | 99.36% | pos 128909 (F+) |
Clone | R | F | ||||
---|---|---|---|---|---|---|
Accession | %id | Position (strand) | Accession | %id | Position (strand) | |
WI1-1022E6 | AL591075.11 | 100% | pos 127981 (R-) | AL591075.11 | 100% | pos 86271 (F+) |
WI1-1040M5 | AL591075.11 | 99.77% | pos 116721 (R+) | AL591075.11 | 99.24% | pos 153661 (F-) |
WI1-1087I3 | AL591075.11 | 99.56% | pos 37344 (R+) | AL591075.11 | 100% | pos 77487 (F-) |
WI1-1146N23 | AL591075.11 | 100% | pos 31612 (R+) | AL591075.11 | 99.71% | pos 68567 (F-) |
WI1-1166F4 | AL591404.4 | 100% | pos 36028 (R-) | |||
WI1-1231I9 | AL591404.4 | 100% | pos 17807 (F-) | |||
WI1-1254G20 | AL591404.4 | 99.81% | pos 2439 (F+) | |||
WI1-1291B9 | AL591404.4 | 100% | pos 200971 (R+) | AL591075.11 | 99.37% | pos 43140 (F-) |
WI1-1321B6 | AL591075.11 | 100% | pos 137619 (F+) | |||
WI1-1355C8 | AL591075.11 | 99.3% | pos 131201 (R-) | AL591075.11 | 100% | pos 92226 (F+) |
WI1-1376J18 | AL591075.11 | 99.78% | pos 93815 (F-) | |||
WI1-1420B17 | AL591075.11 | 99.75% | pos 70879 (R-) | |||
WI1-1434H24 | AL591075.11 | 99.85% | pos 71738 (R-) | AL591075.11 | 99.65% | pos 31823 (F+) |
AL591075.11 | 100% | pos 71738 (R-) | AL591075.11 | 100% | pos 31806 (F+) | |
WI1-1484C11 | AL591404.4 | 99.78% | pos 50819 (R-) | AL591404.4 | 100% | pos 20017 (F+) |
WI1-1556H19 | AL591404.4 | 100% | pos 77509 (R-) | AL591404.4 | 100% | pos 42246 (F+) |
WI1-1558F17 | AL591075.11 | 100% | pos 144379 (R+) | |||
WI1-163L22 | AL591075.11 | 100% | pos 21425 (F+) | |||
WI1-1648E2 | AL591075.11 | 100% | pos 43739 (R-) | AL591075.11 | 100% | pos 2112 (F+) |
WI1-166C8 | AL591404.4 | 100% | pos 108516 (R-) | AL591404.4 | 100% | pos 72794 (F+) |
WI1-1671D14 | AL591075.11 | 99.66% | pos 138387 (F+) | |||
WI1-1744N14 | AL591404.4 | 99.82% | pos 42692 (R-) | |||
WI1-1779E7 | AL591404.4 | 100% | pos 48884 (R+) | AL591404.4 | 100% | pos 89216 (F-) |
WI1-1828E2 | AL591404.4 | 99.72% | pos 77525 (R-) | AL591404.4 | 99.44% | pos 36207 (F+) |
WI1-184E23 | AL591404.4 | 100% | pos 69732 (R-) | AL591404.4 | 99.7% | pos 34309 (F+) |
WI1-1928O19 | AL591404.4 | 99.64% | pos 15187 (F-) | |||
WI1-1968G14 | AL591404.4 | 99.81% | pos 59802 (R+) | AL591404.4 | 99.81% | pos 100712 (F-) |
WI1-1980O8 | AL591075.11 | 100% | pos 141817 (F+) | |||
WI1-199A11 | AL591075.11 | 100% | pos 115576 (R+) | AL591075.11 | 100% | pos 153046 (F-) |
WI1-2088A21 | AL591404.4 | 99.85% | pos 330 (F+) | |||
WI1-2106M17 | AL591404.4 | 100% | pos 29194 (F-) | |||
WI1-213H15 | AL591075.11 | 99.76% | pos 146261 (R+) | |||
WI1-2159P3 | AL591075.11 | 100% | pos 105085 (R-) | AL591075.11 | 100% | pos 62686 (F+) |
WI1-2167O1 | AL591404.4 | 100% | pos 64058 (R+) | AL591404.4 | 100% | pos 104482 (F-) |
WI1-2213M16 | AL591404.4 | 100% | pos 4394 (R-) | |||
WI1-2215C9 | AL591404.4 | 99.62% | pos 167259 (R+) | AL591404.4 | 99.84% | pos 202752 (F-) |
AL591075.11 | 99.84% | pos 1139 (F-) | ||||
WI1-2254D23 | AL591075.11 | 99.41% | pos 100618 (R-) | AL591075.11 | 100% | pos 59864 (F+) |
WI1-2263L2 | AL591075.11 | 100% | pos 153649 (F+) | |||
WI1-2289J20 | AL591404.4 | 100% | pos 8457 (R+) | |||
WI1-2356L8 | AL591075.11 | 100% | pos 149003 (F+) | |||
WI1-2373G4 | AL591075.11 | 99.79% | pos 130054 (R+) | |||
WI1-2405P17 | AL591075.11 | 99.55% | pos 104163 (R+) | AL591075.11 | 100% | pos 140710 (F-) |
WI1-2459G24 | AL591404.4 | 99.71% | pos 2575 (F-) | |||
WI1-2500O6 | AL591404.4 | 99.82% | pos 75944 (R-) | AL591404.4 | 100% | pos 35369 (F+) |
WI1-2529G12 | AL591075.11 | 99.77% | pos 134144 (F-) | |||
WI1-2555J7 | AL591075.11 | 99.32% | pos 4912 (R+) | AL591075.11 | 99.55% | pos 44870 (F-) |
WI1-2582O17 | AL591075.11 | 99.82% | pos 119366 (R-) | AL591075.11 | 100% | pos 82356 (F+) |
WI1-2594M16 | AL591075.11 | 100% | pos 128611 (R+) | |||
WI1-2615F19 | AL591075.11 | 100% | pos 124348 (R+) | |||
WI1-2675P23 | AL591404.4 | 99.74% | pos 124018 (R+) | AL591404.4 | 100% | pos 162746 (F-) |
WI1-2678F18 | AL591075.11 | 100% | pos 76801 (R-) | |||
WI1-2683D4 | AL591075.11 | 100% | pos 143045 (F+) | |||
WI1-2693K12 | AL591404.4 | 100% | pos 23642 (R-) | |||
WI1-2701P2 | AL591404.4 | 100% | pos 136668 (R-) | |||
WI1-274M7 | AL591075.11 | 100% | pos 62887 (R-) | AL591075.11 | 99.83% | pos 22203 (F+) |
WI1-2786N12 | AL591075.11 | 100% | pos 140115 (F+) | |||
WI1-2786P7 | AL591075.11 | 99.69% | pos 140114 (F+) | |||
WI1-27G21 | AL591404.4 | 100% | pos 162792 (R+) | AL591075.11 | 100% | pos 4735 (F-) |
WI1-2804G14 | AL591404.4 | 100% | pos 36088 (R+) | |||
WI1-2833J14 | AL591404.4 | 100% | pos 63399 (R-) | AL591404.4 | 99.77% | pos 27404 (F+) |
WI1-2854G16 | AL591075.11 | 99.79% | pos 146098 (R+) | |||
WI1-2909L1 | AL591075.11 | 99.03% | pos 55417 (R-) | AL591075.11 | 100% | pos 16462 (F+) |
WI1-310I20 | AL591075.11 | 99.45% | pos 137580 (F+) | |||
WI1-354N19 | AL591075.11 | 100% | pos 128995 (F+) | |||
WI1-357B23 | AL591075.11 | 99.44% | pos 62666 (R+) | AL591075.11 | 99.83% | pos 98089 (F-) |
WI1-455O19 | AL591404.4 | 99.21% | pos 8938 (R+) | AL591404.4 | 99.27% | pos 47576 (F-) |
WI1-45I5 | AL591075.11 | 99.27% | pos 137573 (F+) | |||
WI1-472G21 | AL591404.4 | 99.3% | pos 85134 (F+) | |||
WI1-529I18 | AL591075.11 | 100% | pos 6474 (F-) | |||
WI1-533P19 | AL591404.4 | 99.75% | pos 54025 (R+) | AL591404.4 | 99.66% | pos 96800 (F-) |
WI1-575D9 | AL591075.11 | 100% | pos 76596 (R-) | AL591075.11 | 100% | pos 31880 (F+) |
WI1-601M20 | AL591404.4 | 100% | pos 63700 (R+) | AL591404.4 | 99.75% | pos 105433 (F-) |
WI1-613B3 | AL591404.4 | 100% | pos 7963 (F-) | |||
WI1-756G13 | AL591075.11 | 100% | pos 146202 (R-) | AL591075.11 | 99.62% | pos 105745 (F+) |
WI1-779O15 | AL591404.4 | 99.74% | pos 200425 (R+) | AL591075.11 | 100% | pos 43148 (F-) |
WI1-82A4 | AL591404.4 | 100% | pos 59233 (R+) | AL591404.4 | 100% | pos 85703 (F-) |
WI1-837L19 | AL591404.4 | 100% | pos 99816 (R+) | AL591404.4 | 99.7% | pos 139288 (F-) |
WI1-837O6 | AL591404.4 | 100% | pos 99800 (R+) | |||
WI1-865E8 | AL591075.11 | 100% | pos 4721 (R-) | AL591404.4 | 99.83% | pos 167217 (F+) |
AL591075.11 | 100% | pos 4745 (R-) | AL591404.4 | 100% | pos 167218 (F+) | |
WI1-87G23 | AL591075.11 | 99.82% | pos 40788 (R-) | AL591404.4 | 100% | pos 200603 (F+) |
WI1-911G19 | AL591404.4 | 100% | pos 68158 (R+) | AL591404.4 | 99.63% | pos 111137 (F-) |
WI1-911P18 | AL591404.4 | 100% | pos 68160 (R+) | AL591404.4 | 100% | pos 111152 (F-) |
WI1-984M19 | AL591075.11 | 99.58% | pos 42031 (R-) | AL591404.4 | 99.73% | pos 200260 (F+) |